iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
UBAP2	VPS29	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
S100A10	UBAP2	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	G	GP	G	GP	GP	G
UBAP2L	UBAP2	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	G	GP	G	GP	GP	G
UBAP2	ZC3H14	22939629	biogrid	exp	GP	GP	G	G	G	GP	G		G	GP	G	GP	GP	G	G	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	ZFR	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	WWOX	24550385	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
GLUL	UBAP2	26186194	biogrid	exp	GP	G	G	G	GP	GP	G		G	GP	G	G	GP	G	G	G	GP	GP	G	G	G	GP	G	G	G	GP	G	GP	GP	G
UBAP2	ITCH	16055720	biogrid,i2d	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
QPCT	UBAP2	26186194	biogrid	exp	GP	GP	G	G	G	GP	G		P	GP	G	P	P		GP		P	GP		GP	G	P	GP	G	P	GP	G	P	P
RBFOX2	UBAP2	26186194	biogrid	exp	G	GP	G	G	GP	GP	G		G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
NTRK1	UBAP2	25921289	biogrid	exp	P	P				P	G		P	P		P	P				P	P		P		P	P		P	P		P	P
CUL3	UBAP2	21145461	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
DLD	UBAP2	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	NUP50	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	G3BP2	19615732	biogrid,intact	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
CDKL5	UBAP2	26186194	biogrid	exp	P	P			P	P			P	P		P	P		P		P	P		P		P	P		P	P		P	P
THY1	UBAP2	22939629	biogrid	exp	G	G	G	G	G	GP	G		G	G	G	GP	G	G	G	G	G	GP	G	G	G	G	G	G	GP	G	G	G	G	G
TOMM40	UBAP2	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
FUS	UBAP2	25192599	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
PRDX5	UBAP2	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
FXR1	UBAP2	24778252	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	KLHL20	26186194	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
VDAC1	UBAP2	22939629	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
YWHAE	UBAP2			ortho	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	TMUB1	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	CIDEC	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	RAPH1	23023127		pred	GP	GP	G		P	GP	G		G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	G	GP	G	GP	GP	G
UBXN2A	UBAP2	23023127		pred	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
UBAP2	UBL4B	23023127		pred	P	P			P	P			P	P		P			P		P	P		P		P	P		P	P		P	P
UBAP2	RTCB	21836163		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	UHRF2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
CIDEA	UBAP2	23023127		pred	G		G						G							G	G			G						G		G
UBAP2	RHBDD3	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	G	G	G	GP	GP	G	GP	G	GP	G	G	G	GP	G	GP	GP	G
UBAP2	STUB1	21836163		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	NFATC2IP	23023127		pred	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
UBAP2	USP16	21836163		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBXN11	UBAP2	23023127		pred	G	GP	G	G	G	GP	G		GP	P	G	GP	GP	G	G	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	HERPUD2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	UBQLN4	25402006		pred	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
BAG6	UBAP2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	FAF1	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
COPZ1	UBAP2	21836163		pred	GP	GP	G	G	G	GP	G		GP	GP	G	GP	G	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
MIDN	UBAP2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	G	G	G	GP	GP	G	G	G	GP	GP	G	GP	GP	G	GP	GP	G
EPB41L2	UBAP2	23023127		pred	GP	G	G	G	GP	GP	G		G	GP	G	GP	GP	G	GP	G	G	GP	G	G	G	G	G	G	G	G	G	G	GP	G
UBAP2	BAG1	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	GP	G
UBAP2	RBBP6	23023127		pred	GP	G	G	G	G	GP	G		GP	GP	G	GP	GP	G	G	G	GP	GP	G	G	G	GP	G	G	G	GP	G	GP	GP	G
UBAP2	RIN2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	G	G	G	GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	P	G

PPI - PINA
Gene A	Gene B	Method	Publications	Species A	Species B	Interaction Type	Source Database	Interaction Identidiers	Experimental Role(s) Interactor A	Experimental Role(s) Interactor B
UBC	UBAP2	MI:0004(affinity chromatography technology)\|MI:0004(affinity chromatography technology)\|MI:0004(affinity chromatography technology)\|MI:0004(affinity chromatography technology)	21139048,21906983,21963094,23000965	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)	(biogrid)\|(biogrid)\|(biogrid)\|(biogrid)	BIOGRID_178527\|BIOGRID_267899\|BIOGRID_264234\|BIOGRID_169214	bait\|bait\|bait\|bait	prey\|prey\|prey\|prey
DLD	UBAP2	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_238562	bait	prey
UBAP2	ITCH	MI:0004(affinity chromatography technology)\|MI:0493(in vivo)	16055720	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0407(direct interaction)\|-	(biogrid)\|MI:0468(hprd)	BIOGRID_297870\|HPRD_39749	prey\|-	bait\|-
UBAP2	ZFR	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_242570	bait	prey
CUL3	UBAP2	MI:0004(affinity chromatography technology)	21145461	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)	(biogrid)	BIOGRID_202273	bait	prey
UBAP2	G3BP2	MI:0007(anti tag coimmunoprecipitation)\|MI:0004(affinity chromatography technology)	19615732	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)\|MI:0915(physical association)	(intact)\|(biogrid)	UniProt_100707\|BIOGRID_120561	prey\|prey	bait\|bait
UBAP2	NUP50	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_238770	prey	bait
UBAP2	VPS29	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_242638	bait	prey
TOMM40	UBAP2	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_241713	bait	prey
THY1	UBAP2	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_243466	bait	prey
VDAC1	UBAP2	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_240551	prey	bait
UBAP2	ZC3H14	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_243944	bait	prey
PRDX5	UBAP2	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_241856	bait	prey
S100A10	UBAP2	MI:0401(biochemical)	22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)	(biogrid)	BIOGRID_243608	bait	prey
UBAP2	WWOX	MI:0004(affinity chromatography technology)	24550385	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)	(biogrid)	BIOGRID_309068	prey	bait
UBAP2L	UBAP2	MI:0401(biochemical)\|MI:0493(in vivo)	16055720,22939629	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0403(colocalization)\|-	(biogrid)\|MI:0468(hprd)	BIOGRID_235887\|HPRD_39749	prey\|-	bait\|-

PPI - HINT
Gene A	Gene B	PMID	Method	Quality
UBAP2	G3BP2	19615732,19615732	0004,0007	HT
UBAP2	G3BP2	19615732,19615732	0004,0007	HT

PPI - Mentha
Protein A	Protein B	Gene A	Gene B	Score	PMID
Q5T6F2	P60903	UBAP2	S100A10	0.081	22939629
Q5T6F2	P21796	UBAP2	VDAC1	0.081	22939629
Q6P3W7	Q5T6F2	SCYL2	UBAP2	0.126	unassigned1312
Q6PJT7	Q5T6F2	ZC3H14	UBAP2	0.081	22939629
Q96KR1	Q5T6F2	ZFR	UBAP2	0.081
Q9UBQ0	Q5T6F2	VPS29	UBAP2	0.081	22939629
Q5T6F2	O43251	UBAP2	RBFOX2	0.126	26186194
Q9H8Y8	Q5T6F2	GORASP2	UBAP2	0.126	unassigned1312
Q9H6Z9	Q5T6F2	EGLN3	UBAP2	0.126	26972000
Q8IY67	Q5T6F2	RAVER1	UBAP2	0.126	unassigned1312
Q9NZC7	Q5T6F2	WWOX	UBAP2	0.126	24550385
Q9Y2M5	Q5T6F2	KLHL20	UBAP2	0.126	26186194
Q5T6F2	O76039	UBAP2	CDKL5	0.126	26186194
Q5T6F2	P09622	UBAP2	DLD	0.081	22939629
Q5T6F2	P04216	UBAP2	THY1	0.081	22939629
Q5T6F2	P04629	UBAP2	NTRK1	0.126	25921289
Q5T6F2	O96008	UBAP2	TOMM40	0.081	22939629
Q9UN86	Q5T6F2	G3BP2	UBAP2	0.236	19615732
Q5T6F2	P60710	UBAP2	ACTB	0.236	26496610
Q5T6F2	P30044	UBAP2	PRDX5	0.081	22939629
Q5T6F2	P35637	UBAP2	FUS	0.126	25192599
Q9UKX7	Q5T6F2	NUP50	UBAP2	0.081	22939629
Q5T6F2	Q13618	UBAP2	CUL3	0.126	21145461
Q5T6F2	P51114	UBAP2	FXR1	0.126	24778252
Q5T6F2	P15104	UBAP2	GLUL	0.126	26186194
Q5T6F2	Q16769	UBAP2	QPCT	0.126	26186194

PPI - InWeb_IM
Gene A	Gene B	MI 1	Interaction 1	MI 2	Interaction 2
RBFOX2	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
CDKL5	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
NTRK1	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
UBC	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
GLUL	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
FUS	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
FXR1	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
ACTB	UBAP2	MI:0362	inference	MI:0461	interaction database
SUMO1	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
CUL3	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
QPCT	UBAP2	MI:0045	experimental interaction detection	MI:0461	interaction database
UBAP2	ITCH	MI:0045	experimental interaction detection	MI:0461	interaction database
UBAP2	WWOX	MI:0045	experimental interaction detection	MI:0461	interaction database
UBAP2	G3BP2	MI:0045	experimental interaction detection	MI:0461	interaction database
UBAP2	KLHL20	MI:0045	experimental interaction detection	MI:0461	interaction database