DNA & RNA Element - RepTar |
Gene Name | miRNA | Begin | End | Profile |
TRIM31 | hsa-miR-193bstar | beg:402 | end:419 | pic:3' AGTAGAGCGGG-AGTTTTGGGGC 5'& |.|| || ||||||| &5' -------GTCCATC-AAACCCC- 3' |
TRIM31 | hsa-miR-3172 | beg:409 | end:420 | pic:3' ATTCCTGACGTTTTGGGGT 5'& |||||||| &5' -----------AAACCCCA 3' |
TRIM31 | hsa-miR-876-3p | beg:558 | end:574 | pic:3' ACTTAATGAAACATTTGGTGGT 5'& ||| .|||||||| &5' ------ACTG---GAACCACCA 3' |
TRIM31 | hsa-miR-3170 | beg:402 | end:420 | pic:3' TGACAGACAGAGTCTTGGGGTC 5'& ||| ||| ||||||| &5' ---GTCCA--TCA-AACCCCA- 3' |
TRIM31 | hsa-miR-1914star | beg:465 | end:481 | pic:3' GGAGGGTCACGCCCTGGGGAGG 5'& |||||| ||||||| &5' -CTCCCA-------ACCCCTC- 3' |
TRIM31 | hsa-miR-2117 | beg:0 | end:17 | pic:3' GACAGGAACCGTTTCTCTTGT 5'& || || |||||||| &5' ----CCA--GCTCAGAGAACA 3' |
TRIM31 | hsa-miR-483-3p | beg:105 | end:123 | pic:3' TTCTGCCCTCCTCTCCTCACT 5'& ||| || |||||||. &5' -----GGGTCGA-AGGAGTGG 3' |
TRIM31 | hsa-miR-1270 | beg:227 | end:240 | pic:3' TGTGTCGAGAAGGTATAGAGGTC 5'& || |||||||| &5' ------------CA-ATCTCCAG 3' |
TRIM31 | hsa-miR-620 | beg:229 | end:239 | pic:3' TAAAGATATAGATAGAGGTA 5'& ||||||| &5' ------------ATCTCCA- 3' |
TRIM31 | bkv-miR-B1-5p | beg:0 | end:12 | pic:3' TACGAGAAGGGTTCAGAGTCTA 5'& || || |||||| &5' ---------CC-AG-CTCAGA- 3' |
TRIM31 | hsa-miR-886-3p | beg:234 | end:248 | pic:3' TTCCCAGTCATTCGTGGGCGC 5'& ||| ||||||| &5' ------CAGC---CACCCGC- 3' |
TRIM31 | hsa-miR-622 | beg:550 | end:565 | pic:3' CGAGGTTGGAGTCGTCTGACA 5'& .|.||||||||| &5' --------TTTAGCAGACTG- 3' |
TRIM31 | hsa-miR-3199 | beg:301 | end:320 | pic:3' TTGAAAGAGGATTCCGTCAGGGA 5'& || |||. |||||||| &5' -----TC-CCTGCAGCAGTCCC- 3' |
TRIM31 | hsa-miR-3179 | beg:455 | end:468 | pic:3' TGCAAATTTAAAGTGGGGAAGA 5'& || |||||||| &5' -----------TC-CCCCTTCT 3' |
TRIM31 | hsa-miR-3196 | beg:236 | end:251 | pic:3' CTCCGGGGACGGCGGGGC 5'& ||| ||||||| &5' ---GCCAC--CCGCCCC- 3' |
TRIM31 | ebv-miR-BART10star | beg:575 | end:596 | pic:3' ACATGTCTTGGT----TTCTCCACCG 5'& |.|| |.|.||||| &5' -------AGCCTCTGTAGGGGGTGG- 3' |
TRIM31 | ebv-miR-BART11-3p | beg:381 | end:402 | pic:3' CCGT--CAGTCGGACCACACGCA 5'& ||| | |||||||| || | &5' -GCAACGCCAGCCTGG-GT-C-- 3' |
TRIM31 | ebv-miR-BART1-5p | beg:130 | end:150 | pic:3' GTGTCGTGCAGTGAAGGTGATTCT 5'& .|| || |.|||.||| &5' ---GGCTCGGG----CTACTGAGA 3' |
TRIM31 | ebv-miR-BART21-3p | beg:383 | end:406 | pic:3' TTTGTGGTC--ACCC-GTGTTGATC 5'& |||.|||| |||| ||||. &5' -AACGCCAGCCTGGGTCACAG---- 3' |
TRIM31 | ebv-miR-BART3 | beg:264 | end:284 | pic:3' TGTGGACCACTGATCACCACGC 5'& |||.| ||.|| ||||||| &5' -CACTT--TGGCT-GTGGTGC- 3' |
TRIM31 | ebv-miR-BART3 | beg:11 | end:33 | pic:3' TGTGGACCACTGATCACCACGC 5'& |||| || .| .||||||| &5' ACACG-GGGAGC-GGTGGTGC- 3' |
TRIM31 | ebv-miR-BART5 | beg:263 | end:274 | pic:3' GCTACCCGTCGATATAAGTGGAAC 5'& ||||.||| &5' ----------------TCACTTTG 3' |
TRIM31 | hsa-miR-3167 | beg:357 | end:376 | pic:3' TGTGGTCATAAAGACTTTAGGA 5'& .|||| |||||||| &5' --GCCAGGAG---TGAAATCC- 3' |
TRIM31 | hsa-miR-4273 | beg:0 | end:18 | pic:3' GACAGGT--AGTCTCTTGTG 5'& ||| ||||||||||| &5' ----CCAGCTCAGAGAACAC 3' |
TRIM31 | hsa-miR-548q | beg:337 | end:357 | pic:3' GGCGGTAATGAAAA-CGTGGTCG 5'& |. |||| |||||||. &5' --GT--TTACCGAAGGCACCAGT 3' |
TRIM31 | hsa-miR-1288 | beg:301 | end:319 | pic:3' AGAGGTCTAGTCCCGTCAGGT 5'& ||| || ||||||| &5' --TCCCTG-CA--GCAGTCC- 3' |
TRIM31 | hsa-miR-3151 | beg:236 | end:253 | pic:3' TGGACTAGGGTAACGGGGTGG 5'& .|| ||| ||||||| &5' GCCA---CCC---GCCCCAC- 3' |
TRIM31 | hsa-miR-4303 | beg:0 | end:13 | pic:3' GACAGGAGTCGAGTCTT 5'& |||||||||. &5' -------CAGCTCAGAG 3' |
TRIM31 | hsa-miR-218-1star | beg:554 | end:571 | pic:3' GGTACCACGAACTG-CCTTGGTA 5'& || ||| ||||||| &5' -------GCA-GACTGGAACCA- 3' |
TRIM31 | hsa-miR-3144-5p | beg:532 | end:542 | pic:3' GATATATAGAGAAACCAGGGGA 5'& ||||||| &5' --------------GGTCCCC- 3' |
TRIM31 | hsa-miR-220b | beg:14 | end:31 | pic:3' TTCACAGTCTG-TGCCACCACC 5'& |.|. .|||||||| &5' ------CGGGGAGCGGTGGTG- 3' |
TRIM31 | hsa-miR-548b-3p | beg:77 | end:94 | pic:3' TGTTTTCGTTGACTCCAAGAAC 5'& |.|| |||||||| &5' -------CGACCACGGTTCTTG 3' |
TRIM31 | hcmv-miR-UL148D | beg:114 | end:136 | pic:3' GC-CACTTCTTCCCCTCCTGCT 5'& | |||.|||| ||||||.| &5' -GAGTGGAGAATGGGAGGGC-- 3' |
TRIM31 | hcmv-miR-UL148D | beg:147 | end:169 | pic:3' GC-CACTTCT-TCCCCTCCTGCT 5'& | |||.||| .|||| ||. | &5' -GAGTGGAGATGGGGGCGGGGG- 3' |
TRIM31 | hcmv-miR-US25-2-3p | beg:274 | end:295 | pic:3' GGCGCCCTCGAGAGGTTCACCTA 5'& |.|.|| || | || |||||| &5' CTGTGGT-GC-CGCCTAGTGGA- 3' |
TRIM31 | hiv1-miR-TAR-5p | beg:361 | end:383 | pic:3' AGTCTAGACCAGATTGGTCTCTCT 5'& |||. || ||.|||||. &5' -CAGGAGTGAAAT--CCGGAGAGG 3' |
TRIM31 | hsa-miR-103-as | beg:265 | end:281 | pic:3' TCGTCGTAACATGTC-CCGATACT 5'& || ||||.||. &5' -----------ACTTTGGCTGTGG 3' |
TRIM31 | hsa-miR-1 | beg:434 | end:454 | pic:3' TATGTATGAAGAAATGTAAGGT 5'& .| |||| ||||||||| &5' --GCT--CTTCCTTACATTCC- 3' |
TRIM31 | hsa-miR-1205 | beg:293 | end:313 | pic:3' GAGTTTCGTTT-GGGACGTCT 5'& |||| ||. |||||||| &5' ---AAAGGAAGTCCCTGCAG- 3' |
TRIM31 | hsa-miR-1231 | beg:329 | end:353 | pic:3' CGTCGACAGGCGGG-TCTGTG 5'& ||||||||. || ||.||| &5' GCAGCTGTTTACCGAAGGCAC 3' |
TRIM31 | hsa-miR-1236 | beg:206 | end:229 | pic:3' GACCTCTC----TGTTCCCCTTCTCC 5'& ||| | .|||||||||| &5' -----GAGCAAAAGGAGGGGAAGAG- 3' |
TRIM31 | hsa-miR-1237 | beg:173 | end:195 | pic:3' GACCCCCTGC-CTCG---TCTTCCT 5'& || | |||. ||||||| &5' ------GAAGAGAGTTGGAGAAGGA 3' |
TRIM31 | hsa-miR-1249 | beg:148 | end:174 | pic:3' ACTTCTTCCCCC-CCTTC-CCGCA 5'& ||.||| ||||| ||..| ||.| &5' TGGAGATGGGGGCGGGGGTGGTG- 3' |
TRIM31 | hsa-miR-125b-1star | beg:351 | end:377 | pic:3' TCGAG--GGTTCTCGGATTGGGCA 5'& ||.|| |||.|||. ||.||| &5' AGTTCAGCCAGGAGTGAAATCCG- 3' |
TRIM31 | hsa-miR-1269 | beg:389 | end:410 | pic:3' GGTCATCGTGCCGAG--TCAGGTC 5'& ||| .|| || |||||| &5' -----AGCCTGGGTCACAGTCCA- 3' |
TRIM31 | hsa-miR-1275 | beg:460 | end:474 | pic:3' CTGTCGGAGAGGGGGTG 5'& |.||||.|||| &5' -----CTTCTCTCCCA- 3' |
TRIM31 | hsa-miR-1281 | beg:214 | end:231 | pic:3' CCCTCTCCTCCTCCGCT 5'& ||||.||| ||| | &5' -GGAGGGGAAGAGAC-- 3' |
TRIM31 | hsa-miR-1288 | beg:387 | end:410 | pic:3' AGAGGTCTAGTCCC---GTCAGGT 5'& |||| ||| ||||||| &5' ---CCAGCCT-GGGTCACAGTCCA 3' |
TRIM31 | hsa-miR-1293 | beg:415 | end:435 | pic:3' CGTGTTTAGAGGTCTGGTGGGT 5'& || |. | || ||||||.| &5' -CATGAG-C-CC-GACCACTC- 3' |
TRIM31 | hsa-miR-1294 | beg:424 | end:450 | pic:3' TCTGTTGTTA-CGGTT-GGAGTGT 5'& ||| || ||. |||.||| &5' -GACCACTCTCGCTCTTCCTTACA 3' |
TRIM31 | hsa-miR-1298 | beg:346 | end:372 | pic:3' ATGTAGACCTGTCGG--CTTACTT 5'& .|| | | ||||| ||.|||| &5' -GCACCAGTTCAGCCAGGAGTGAA 3' |
TRIM31 | hsa-miR-1308 | beg:558 | end:577 | pic:3' GGTGA-CTTGGTGGGTACG 5'& ||| |||||||| || &5' --ACTGGAACCACCAC-GC 3' |
TRIM31 | hsa-miR-130bstar | beg:208 | end:229 | pic:3' CATCACGTTG---TCCCTTTCTCA 5'& |||| ||||.||||| &5' -----GCAAAAGGAGGGGAAGAG- 3' |
TRIM31 | hsa-miR-1321 | beg:444 | end:462 | pic:3' TAGTGTAAG--TGGAGGGAC 5'& |.|||||| || |||| &5' -TTACATTCCCACGTCCC-- 3' |
TRIM31 | hsa-miR-135astar | beg:77 | end:100 | pic:3' GC-GGTGCCGAGGTTAGGGATAT 5'& || ||||||.||. |.|| &5' CGACCACGGTTCTTGA-CTTA-- 3' |
TRIM31 | hsa-miR-138 | beg:376 | end:395 | pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& || .||||.||||| &5' ------GAGGAGCAACGCCAGC- 3' |
TRIM31 | hsa-miR-138 | beg:335 | end:358 | pic:3' GCCGGACTAAGTG----TTGTGGTCGA 5'& ||| ||.|| ..||||||.| &5' ----CTG-TTTACCGAAGGCACCAGTT 3' |
TRIM31 | hsa-miR-148bstar | beg:55 | end:77 | pic:3' CG-GACTCACATATTGTCTTGAA 5'& || ||||||| .|..| ||. &5' GCGCTGAGTGAGTGGCTGAG--- 3' |
TRIM31 | hsa-miR-1538 | beg:377 | end:402 | pic:3' TCCTTGTCGTCGTCGGGCCCGGC 5'& ||||.|| |. |||||.|||.| &5' AGGAGCAACGCCAGCCTGGGTC- 3' |
TRIM31 | hsa-miR-181cstar | beg:13 | end:31 | pic:3' CAGGTGAGTTGCCA---GCTACCAA 5'& |||| ||.|||| &5' ---------ACGGGGAGCGGTGGT- 3' |
TRIM31 | hsa-miR-1825 | beg:149 | end:169 | pic:3' CCTCTCCTCCCGTGACCT 5'& ||||| |.||||. || &5' GGAGATGGGGGCGGGGG- 3' |
TRIM31 | hsa-miR-185 | beg:458 | end:472 | pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& || |||||||| &5' ----------CCCTTCTCTCC- 3' |
TRIM31 | hsa-miR-190b | beg:467 | end:487 | pic:3' TTGGGTTATAGTTTGTATAGT 5'& ||||| ||||||| &5' --CCCAACCCCT--CATATCA 3' |
TRIM31 | hsa-miR-196bstar | beg:15 | end:40 | pic:3' CTTC-CGTCACAGCACGACA-GCT 5'& |..| ||.||| ||||| ||. &5' GGGGAGCGGTG--GTGCTACACGG 3' |
TRIM31 | hsa-miR-197 | beg:157 | end:179 | pic:3' CGACCCACCTCTTCCACCACTT 5'& ||| ||.|. ||||||||| &5' ---GGGCGGGGGTGGTGGTGAA 3' |
TRIM31 | hsa-miR-202 | beg:447 | end:470 | pic:3' AAGGGTACGGGATATGGAGA 5'& |||||| |.|| .|||| &5' TTCCCACGTCCCCCTTCTCT 3' |
TRIM31 | hsa-miR-204 | beg:477 | end:496 | pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |||| .| ||||||| &5' ---CATATCA--GC-AAGGGAA 3' |
TRIM31 | hsa-miR-206 | beg:431 | end:454 | pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& | |.| |||||||||||||| &5' -CTCGCTCTTCCTTACATTCC- 3' |
TRIM31 | hsa-miR-2116star | beg:113 | end:134 | pic:3' CCCTCAAGAACCG--TACCCTCC 5'& ||||| || |||||||| &5' -GGAGT----GGAGAATGGGAGG 3' |
TRIM31 | hsa-miR-2117 | beg:107 | end:128 | pic:3' GACAGGAACCGTTTCTCTTGT 5'& ||| || .|||||. &5' --GTCGAAGGAGTGGAGAAT- 3' |
TRIM31 | hsa-miR-220b | beg:155 | end:177 | pic:3' TTCACAGTCTG-TGCCACCACC 5'& || .|.| . |||||||| &5' ---TGG-GGGCGGGGGTGGTGG 3' |
TRIM31 | hsa-miR-222star | beg:128 | end:149 | pic:3' TCCTAGATGTGACCGATGACTC 5'& ||| .| | |||||||||| &5' -GGAGG-GCTCGGGCTACTGAG 3' |
TRIM31 | hsa-miR-26a-1star | beg:178 | end:199 | pic:3' GCACGTTCATTGG--TTCTTATCC 5'& | ||| |.||||.| &5' ---GAGAGTTGGAGAAGGAATGG- 3' |
TRIM31 | hsa-miR-26a-2star | beg:111 | end:131 | pic:3' CTTTGTTCATTAGTTCTTATCC 5'& ||| |.| .|||||.|| &5' -----AAGGAGTGGAGAATGGG 3' |
TRIM31 | hsa-miR-28-5p | beg:516 | end:540 | pic:3' GAGTTATCTGAC--ACTCGAGGAA 5'& |||.||||. | |||| ||| &5' -TCAGTAGATAGAATGAGGTCC-- 3' |
TRIM31 | hsa-miR-29a | beg:14 | end:35 | pic:3' ATTGGCTAAAGTCTACCACGAT 5'& ||. |.|||||||| &5' ----CGGGGAGCGGTGGTGCTA 3' |
TRIM31 | hsa-miR-29astar | beg:502 | end:524 | pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& |||. . | |||||||| &5' -TGAGATTTGAT--AAATCAGT 3' |
TRIM31 | hsa-miR-29b | beg:13 | end:35 | pic:3' TTGTGA--CTAAAGTTTACCACGAT 5'& |||| || | ..|||||||| &5' -ACACGGGGAG--C-GGTGGTGCTA 3' |
TRIM31 | hsa-miR-29b-2star | beg:553 | end:571 | pic:3' GATTCGGTGGTAC-ACTTTGGTC 5'& .| || ||.||||| &5' ------TAGCAGACTGGAACCA- 3' |
TRIM31 | hsa-miR-29c | beg:14 | end:35 | pic:3' ATTGGCTAAAGTTTACCACGAT 5'& ||. ..|||||||| &5' ----CGGGGAGCGGTGGTGCTA 3' |
TRIM31 | hsa-miR-302c | beg:537 | end:560 | pic:3' GGT--GACTTTGTACCTTCGTGAAT 5'& ||| ||||||.|| |||| &5' CCATTCTGAAATATTT-AGCA---- 3' |
TRIM31 | hsa-miR-302e | beg:119 | end:137 | pic:3' TTCGTACCTTCGTGAAT 5'& .|| ||||.|| .|| &5' GAGAATGGGAGGGCT-- 3' |
TRIM31 | hsa-miR-30astar | beg:542 | end:568 | pic:3' CGACGTTTGTAGG----CTGACTTTC 5'& ||| |||.||.. |||||.|| &5' -CTG-AAATATTTAGCAGACTGGAA- 3' |
TRIM31 | hsa-miR-30c-1star | beg:452 | end:474 | pic:3' CCTCATTTGTTGGG-----AGAGGGTC 5'& ||. ||| ||||||| &5' -------ACGTCCCCCTTCTCTCCCA- 3' |
TRIM31 | hsa-miR-30estar | beg:542 | end:568 | pic:3' CGACATTTGTAGG----CTGACTTTC 5'& ||| |||.||.. |||||.|| &5' -CTG-AAATATTTAGCAGACTGGAA- 3' |
TRIM31 | hsa-miR-3125 | beg:462 | end:481 | pic:3' AGAGAGGTGTCGAAGGAGAT 5'& ||||||| || | |||| &5' TCTCTCC-CAACC-CCTC-- 3' |
TRIM31 | hsa-miR-3135 | beg:381 | end:401 | pic:3' GTGACGTCA-GAGTCGGATCCGT 5'& ||| | ||||||.||. &5' ----GCAACGC-CAGCCTGGGT- 3' |
TRIM31 | hsa-miR-3141 | beg:230 | end:251 | pic:3' AGGAGGA-GGTGGGCGGGAG 5'& .|||| |||||||||| | &5' -TCTCCAGCCACCCGCCC-C 3' |
TRIM31 | hsa-miR-3145 | beg:534 | end:556 | pic:3' GTTAAGGTTTGTGAG-TTTTATAGA 5'& ||| ||.|| .||||||.| &5' ----TCCC--CATTCTGAAATATTT 3' |
TRIM31 | hsa-miR-3164 | beg:385 | end:405 | pic:3' GCGGTAAAGGGAATTTCAGTGT 5'& ||||| ||. .|||||| &5' CGCCAG--CCTG---GGTCACA 3' |
TRIM31 | hsa-miR-3169 | beg:74 | end:93 | pic:3' GATACAC-GGTTCGTGTCAGGAT 5'& | ||.| |||.||.|| &5' ------GACCGACCACGGTTCT- 3' |
TRIM31 | hsa-miR-3180-3p | beg:230 | end:252 | pic:3' CCGGAGGCCTTCGA--GGCGGGGT 5'& .|||| ||| |||||||| &5' --TCTCC---AGCCACCCGCCCCA 3' |
TRIM31 | hsa-miR-3181 | beg:414 | end:429 | pic:3' GGCCGCGGCTCCCGGGCTA 5'& || | |||||| &5' ------CCATGAGCCCGA- 3' |
TRIM31 | hsa-miR-3191 | beg:524 | end:543 | pic:3' GACAGACCGGTCGA--TGCAGGGGT 5'& .|| | ||||||| &5' ---------TAGAATGAGGTCCCCA 3' |
TRIM31 | hsa-miR-324-3p | beg:146 | end:166 | pic:3' GGTCGTCGTGGACCCCGTCA 5'& || | |||||.| &5' --AGTGGAGATGGGGGCGG- 3' |
TRIM31 | hsa-miR-330-5p | beg:0 | end:14 | pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .| || ||.|||||| &5' -------GC-CA-GCTCAGAGA 3' |
TRIM31 | hsa-miR-335star | beg:170 | end:191 | pic:3' CCAG-TC-CTCGTTATTACTTTTT 5'& ||| || |||. ||.|.|| &5' GGTGAAGAGAGT-----TGGAGAA 3' |
TRIM31 | hsa-miR-339-5p | beg:145 | end:169 | pic:3' GCACTCGAGG--ACCTCCTGTCCCT 5'& |||. ||| ||.|.|||. &5' ---GAGTGGAGATGG-GGGCGGGGG 3' |
TRIM31 | hsa-miR-367star | beg:306 | end:317 | pic:3' TCTCAACGTATAATCGTTGTCA 5'& |||.|||| &5' --------------GCAGCAGT 3' |
TRIM31 | hsa-miR-412 | beg:158 | end:180 | pic:3' TGCCGA--TCACCTGGTCCACTTCA 5'& ||| .|||| ||||||| &5' --GGCGGGGGTGGT---GGTGAAG- 3' |
TRIM31 | hsa-miR-423-5p | beg:460 | end:482 | pic:3' TTTCAGAGCGAGAGAC--GGGGAGT 5'& ||. ||||| ||||||| &5' -----CTT-CTCTCCCAACCCCTCA 3' |
TRIM31 | hsa-miR-4252 | beg:53 | end:75 | pic:3' ACCACGACTGAGTCACCGG 5'& ||| ||||| | ||||||. &5' TGGCGCTGAGTGAGTGGCT 3' |
TRIM31 | hsa-miR-4254 | beg:168 | end:190 | pic:3' CTCTACCAC--CTCATCGAGGTCCG 5'& |.||||| ||| ||.| || &5' --GGTGGTGAAGAG-AGTTGGAG-- 3' |
TRIM31 | hsa-miR-4257 | beg:568 | end:586 | pic:3' GAGTCAGGGG----TGGAGACC 5'& || .|||||| &5' ------CCACGCAAGCCTCTG- 3' |
TRIM31 | hsa-miR-4257 | beg:451 | end:468 | pic:3' GAGT-CAGGGGTGGAGACC 5'& || |||||| |.||| &5' --CACGTCCCC-CTTCT-- 3' |
TRIM31 | hsa-miR-4258 | beg:14 | end:32 | pic:3' GGTTC-CGCCACCGCCCC 5'& | ..| |||||||.| &5' CGGGGAGCGGTGGTG--- 3' |
TRIM31 | hsa-miR-4264 | beg:61 | end:78 | pic:3' TTACTGGTACTGACTCA 5'& |.||| .||.||||| &5' AGTGA--GTGGCTGAG- 3' |
TRIM31 | hsa-miR-4275 | beg:110 | end:130 | pic:3' TTTCTTCACCATTAACC 5'& .|||.||||| .| ||| &5' GAAGGAGTGGAGAATGG 3' |
TRIM31 | hsa-miR-4281 | beg:456 | end:478 | pic:3' GGGGGGAGGGGCCC-TGGG 5'& |||||.||.|. |||| &5' CCCCCTTCTCTCCCAACCC 3' |
TRIM31 | hsa-miR-4291 | beg:331 | end:348 | pic:3' TCGACAAGGACGACTT 5'& |||||||. | ||| &5' AGCTGTTTA--CCGAA 3' |
TRIM31 | hsa-miR-4294 | beg:266 | end:285 | pic:3' GGGA-CGACATCTGAGGG 5'& |..| |||||.| || &5' CTTTGGCTGTGGTG-CC- 3' |
TRIM31 | hsa-miR-4295 | beg:294 | end:312 | pic:3' TTCCTTTTGTAACGTGAC 5'& ||||||. | |||| &5' AAGGAAGTCCCTGCA--- 3' |
TRIM31 | hsa-miR-4297 | beg:342 | end:352 | pic:3' GTGTCTGTCCTTCCGT 5'& ||||||| &5' ---------GAAGGCA 3' |
TRIM31 | hsa-miR-4302 | beg:202 | end:223 | pic:3' GAGCGACTCGG--TGTGACC 5'& || .||||| | . || &5' -TC-TTGAGCAAAAGGAGGG 3' |
TRIM31 | hsa-miR-4305 | beg:157 | end:175 | pic:3' CTTGACCTCCACAGATCC 5'& |..| ||.|||| || &5' GGGC-GGGGGTGGT--GG 3' |
TRIM31 | hsa-miR-4306 | beg:452 | end:472 | pic:3' ATGAC--GGAAAGAGAGGT 5'& || || |||||||| &5' -ACGTCCCCCTTCTCTCC- 3' |
TRIM31 | hsa-miR-4320 | beg:295 | end:320 | pic:3' TCCTTC---GATGTC-TTAGGG 5'& |||||| ||.||| |.|||| &5' AGGAAGTCCCTGCAGCAGTCCC 3' |
TRIM31 | hsa-miR-4322 | beg:302 | end:324 | pic:3' GGGGTGCGCGACTCGGGTGTC 5'& ||| | || | |||.|| &5' CCCTGCA-GCAGTCCCCGCA- 3' |
TRIM31 | hsa-miR-4330 | beg:572 | end:593 | pic:3' CGTTCCGAGACTAGACTCC 5'& ||||| ||||| |.|| &5' GCAAGCCTCTGTAG-GGGG 3' |
TRIM31 | hsa-miR-454 | beg:320 | end:344 | pic:3' TGGGATATTCGTT-ATAACGTGAT 5'& ||.|| ||||||. |.|| .|| &5' ACTCTTTAAGCAGCTGTT-TAC-- 3' |
TRIM31 | hsa-miR-502-5p | beg:475 | end:494 | pic:3' ATCGTGGGTCTA-TCGTTCCTA 5'& |.|| || |||||||. &5' -----CTCATATCAGCAAGGG- 3' |
TRIM31 | hsa-miR-509-3p | beg:340 | end:358 | pic:3' GATGGGTGTCTGCATGGTTAGT 5'& |||| | ||.| ||||.|. &5' -TACCGA-AGGC--ACCAGTT- 3' |
TRIM31 | hsa-miR-510 | beg:386 | end:401 | pic:3' CACTAACGGTGAGAGGACTCAT 5'& |||| ||||.|| &5' ------GCCAG---CCTGGGT- 3' |
TRIM31 | hsa-miR-511 | beg:214 | end:232 | pic:3' ACTGACGTCTCGTTTTCTGTG 5'& | ||.| ||.||||| &5' -----GGAGGGGAAGAGACA- 3' |
TRIM31 | hsa-miR-511 | beg:585 | end:606 | pic:3' ACTGACGTCTCGTTTTCTGTG 5'& |. | || ..|||||| &5' -GGGGGTGGAT--GGAGACAC 3' |
TRIM31 | hsa-miR-515-5p | beg:584 | end:603 | pic:3' GTCTTTCACGAAAGAAAACCTCTT 5'& .|| .||| |||||| &5' TAGGGGGTGGA------TGGAGA- 3' |
TRIM31 | hsa-miR-515-5p | beg:175 | end:191 | pic:3' GTCTTTCACGAAAGAAAACCTCTT 5'& |||.||| ||||||| &5' -AGAGAGT---------TGGAGAA 3' |
TRIM31 | hsa-miR-516a-3p | beg:293 | end:305 | pic:3' TGGGAGACTTTCCTTCGT 5'& ||||||||. &5' --------AAAGGAAGT- 3' |
TRIM31 | hsa-miR-516bstar | beg:293 | end:305 | pic:3' TGGGAGACTTTCCTTCGT 5'& ||||||||. &5' --------AAAGGAAGT- 3' |
TRIM31 | hsa-miR-542-5p | beg:306 | end:322 | pic:3' AGAGCACTGTACTACTAGGGGCT 5'& .|| .|||||| &5' -------GCAGCA--GTCCCCG- 3' |
TRIM31 | hsa-miR-558 | beg:0 | end:10 | pic:3' TAAAACCATGTC-GTCGAGT 5'& | ||||||| &5' -----------GCCAGCTCA 3' |
TRIM31 | hsa-miR-571 | beg:0 | end:10 | pic:3' GAGTGAGTCTACCGGTTGAGT 5'& ||||.|||| &5' ------------GCCAGCTCA 3' |
TRIM31 | hsa-miR-573 | beg:592 | end:617 | pic:3' GACTAGTCAATGTGTAG--TGAAGTC 5'& ||| .| |||| || ||||.| &5' --GAT-GGAGACACTTCTAACTTTA- 3' |
TRIM31 | hsa-miR-581 | beg:2 | end:22 | pic:3' TGACTAGATCTCTTGTGTTCT 5'& | || |||||||||..|. &5' ---GCTC-AGAGAACACGGGG 3' |
TRIM31 | hsa-miR-587 | beg:281 | end:297 | pic:3' CACTGAGTAGTGGA-TACCTTT 5'& |.||| .|||||| &5' ---------CGCCTAGTGGAAA 3' |
TRIM31 | hsa-miR-593star | beg:267 | end:285 | pic:3' CGACTCGTTACGGACCG--ACCACGGA 5'& ..|||| ||||||| &5' -----------TTTGGCTGTGGTGCC- 3' |
TRIM31 | hsa-miR-608 | beg:230 | end:251 | pic:3' TGCCTCGACAG-GGTTGT--GGTGGGGA 5'& || |||.| ||.|||| &5' ---------TCTCCAGCCACCCGCCCC- 3' |
TRIM31 | hsa-miR-615-3p | beg:114 | end:141 | pic:3' TTCTC-CCTCTGGG---TCCGAGCCT 5'& |.||| ||||| .|||||||. &5' AGGAGTGGAGAATGGGAGGGCTCGGG 3' |
TRIM31 | hsa-miR-615-3p | beg:360 | end:384 | pic:3' TTCTCCCTCTGGGTC-CGAGCCT 5'& |.||| || |.||.| | ||| &5' AGGAGTGAAATCCGGAGA--GGA 3' |
TRIM31 | hsa-miR-623 | beg:475 | end:495 | pic:3' TGGGTTGTCGGGGACGTTCCCTA 5'& ||| || .| |||||||| &5' -CCCT-CATA-TCAGCAAGGGA- 3' |
TRIM31 | hsa-miR-624star | beg:13 | end:35 | pic:3' ACTTGTGTTCCATG--ACCATGAT 5'& ||||..|| .| ||||.||| &5' ---ACACGGGGAGCGGTGGTGCTA 3' |
TRIM31 | hsa-miR-628-5p | beg:474 | end:490 | pic:3' GGAGATCATTTATACAGTCGTA 5'& |||| || |||||| &5' CCTC--------ATATCAGCA- 3' |
TRIM31 | hsa-miR-629star | beg:113 | end:136 | pic:3' CGACC-CGAATGCAACCCTCTTG 5'& || |. ||||||..| &5' ---GGAGTGGAGAATGGGAGGGC 3' |
TRIM31 | hsa-miR-645 | beg:380 | end:400 | pic:3' AGTCGTCATGGTCGGATCT 5'& |||| .|||||||.|. &5' --AGCAACGCCAGCCTGGG 3' |
TRIM31 | hsa-miR-646 | beg:318 | end:342 | pic:3' CG-GAGTCTC-CGTCGACGAA 5'& || ||| |||||||.|| &5' GCACTCTTTAAGCAGCTGTTT 3' |
TRIM31 | hsa-miR-647 | beg:342 | end:364 | pic:3' CTTCCTTCACTCACGTCGGTG 5'& ||||| ||| |||||| &5' GAAGGCACC-AGTTCAGCCA- 3' |
TRIM31 | hsa-miR-663b | beg:386 | end:404 | pic:3' GGAGTCCGTGCCGG-CCCGGTGG 5'& || | ||| |||.||| &5' ------GC-CAGCCTGGGTCAC- 3' |
TRIM31 | hsa-miR-668 | beg:51 | end:74 | pic:3' CATCACC-CGGCTCGGCTCACTGT 5'& ||||| ||.||| .|||||.| &5' --AGTGGCGCTGAG-TGAGTGGC- 3' |
TRIM31 | hsa-miR-675 | beg:304 | end:326 | pic:3' GTGACACCCGGGAGAGGCGTGGT 5'& ||| || || ||||||. &5' --CTGCA-GCAGTCCCCGCACT- 3' |
TRIM31 | hsa-miR-744 | beg:300 | end:324 | pic:3' ACGACAATC-GGGA-----TC-GGGGCGT 5'& || |||| || ||||||| &5' -------AGTCCCTGCAGCAGTCCCCGCA 3' |
TRIM31 | hsa-miR-876-5p | beg:359 | end:376 | pic:3' ACCACTAAGTGTTT-CTTTAGGT 5'& || .|. ||||||| &5' --------CAGGAGTGAAATCC- 3' |
TRIM31 | hsa-miR-93star | beg:550 | end:561 | pic:3' GCCCTTCACGATCGAGTCGTCA 5'& .|.||||| &5' -------------TTTAGCAG- 3' |
TRIM31 | hsa-miR-942 | beg:364 | end:384 | pic:3' GTGTAC-CGGTTTT-GTCTCTTCT 5'& | |. ||| |.||||.|| &5' -----GAGTGAAATCCGGAGAGGA 3' |
TRIM31 | hsv1-miR-H2 | beg:118 | end:141 | pic:3' TCAGCGTGAGCAGGGACCGAGTCC 5'& || | .| |||||.|| &5' -GTGGAGAATGGGAG-GGCTCGGG 3' |
TRIM31 | hsv1-miR-H6-3p | beg:149 | end:171 | pic:3' CC-CTACCTTCCTGCCCTTCAC 5'& || ||||| ||.|||| .||| &5' GGAGATGG--GGGCGGG-GGTG 3' |
TRIM31 | hsv2-miR-H10 | beg:237 | end:255 | pic:3' GGCGGGTGGGG-GCGTGGG 5'& || |||.|||| ||| &5' CCACCCGCCCCACGC---- 3' |
TRIM31 | hsv2-miR-H2 | beg:0 | end:12 | pic:3' AGCGCGTACTGGGTCCGAGTCT 5'& ||| ||||||| &5' -----------CCA-GCTCAGA 3' |
TRIM31 | hsv2-miR-H22 | beg:240 | end:264 | pic:3' CGGGT-GGGTGCAGGTCTGGGGA 5'& |||. |||||| |. |||..|| &5' -CCCGCCCCACG-CTTGACTTCT 3' |
TRIM31 | hsv2-miR-H24 | beg:156 | end:184 | pic:3' TCCCGCCCCC-CTTCCGCGGC-CTC 5'& .||||||||| |. ||.| | ||| &5' GGGGCGGGGGTGGTGGTGAAGAGAG 3' |
TRIM31 | hsv2-miR-H7-3p | beg:357 | end:379 | pic:3' CTGCTCCCCAGCCTTAGGTTT 5'& .| ||| || | |||||..| &5' -GCCAGGAGT-GAAATCCGGA 3' |
TRIM31 | kshv-miR-K12-10b | beg:372 | end:393 | pic:3' CGGTGAGCC-C-CCCTGTTGTGGT 5'& ||| | || ||||.||| &5' ------CGGAGAGGAGCAACGCCA 3' |
TRIM31 | kshv-miR-K12-12star | beg:450 | end:474 | pic:3' AGTTGGTCCCGTGGG----AGGGGGT 5'& ||| | ||| ||.|||| &5' ----CCAC-GTCCCCCTTCTCTCCCA 3' |
TRIM31 | kshv-miR-K12-7star | beg:14 | end:34 | pic:3' GTATTTAGGGGCAG---GCCACCGCGA 5'& || ||||||.||| &5' ----------CGGGGAGCGGTGGTGCT 3' |
TRIM31 | kshv-miR-K12-8star | beg:158 | end:185 | pic:3' TCG-CCCCGCAATCACTCC-CTCA 5'& .|| ||||.| |.|||| | |||| &5' GGCGGGGGTGGTGGTGAAGAGAGT 3' |