DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIM54 3'UTR 8009301bf2 NM_032546 chr2:27382914-27383811:+ TRIM54 3'UTR 29c4dc037e NM_032546 chr2:27382914-27383811:+ TRIM54 5'UTR 93aa4faecd NM_032546 chr2:27381071-27381354:+

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT437475 rno-miR-19b-3p Homo sapiens TRIM54 57159 Homo sapiens Luciferase reporter assay Functional MTI 24117217 MIRT437476 rno-miR-19a-3p Homo sapiens TRIM54 57159 Homo sapiens Luciferase reporter assay Functional MTI 24117217

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004568 hsa-miR-221* 57159 TRIM54 uuuagaUGUA-ACA-UACGGUCCa || | ||| |||||||| uugggcACCUCUGUGAUGCCAGGa 2 17 249 272 [hg19:2:27530002-27530025:+] 0.5302 154 7 -16.96 -0.2247 MIMAT0004594 hsa-miR-132* 57159 TRIM54 ucauUGUUAGCUUUCGG-UGCCa ||:| | |||||| |||| cucuACGA-CAAAAGCCAACGGg 2 19 496 517 [hg19:2:27530249-27530270:+] 0.5058 128 0 -17.75 -0.3912 MIMAT0004609 hsa-miR-149* 57159 TRIM54 cgUGUCG-GGGGCA--GGGAGGGa ||||| ::::|| ||||||| ccACAGCAUUUUGUUCCCCUCCCg 2 20 417 440 [hg19:2:27530170-27530193:+] 0.5058 157 7 -29.62 -0.1067 MIMAT0003240 hsa-miR-575 57159 TRIM54 cgaGGACAGGUU-GACCGAg |||| |::| |||||| gcaCCUGGCUGACCUGGCUg 2 17 375 394 [hg19:2:27530128-27530147:+] 0.5058 128 6 -19.12 -0.1297 MIMAT0003244 hsa-miR-579 57159 TRIM54 uuagCGCCAAAUAUGGUUUACUu | || | :|||||||| cuggGGGGCGGAAGCCAAAUGAa 2 20 220 242 [hg19:2:27529973-27529995:+] 0.5302 151 7 -19.13 -0.1412 MIMAT0004809 hsa-miR-628-5p 57159 TRIM54 ggAGAUCA-UUUAUA-CAGU-CGUa |:|| | ||| || |||| ||| cuUUUAUUAAAAAAUAGUCACGCAg 2 21 527 551 [hg19:2:27530280-27530304:+] 0.5058 126 0 -10.94 -0.5555 MIMAT0003886 hsa-miR-769-5p 57159 TRIM54 ucGAGUCUUGGG-UCUCC-AGAGu | | |: ||| :|||| |||| ggCGCCGGCCCCGGGAGGAUCUCa 2 21 84 107 [hg19:2:27529837-27529860:+] 0.5522 123 0 -24.89 -0.5463 MIMAT0010367 hsa-miR-764 57159 TRIM54 ucCUCCUGUUCACUCGUGGACg |:|| | | ||||||| uuGGGGUCCA-CAUGCACCUGg 2 21 362 382 [hg19:2:27530115-27530135:+] 0.5058 142 7 -18.14 -0.1286 MIMAT0004948 hsa-miR-885-3p 57159 TRIM54 auagGUGAUGUGGGGCGACGGa :|: | :::||||||| cccgUAUCUCCUUUCGCUGCCc 2 19 131 152 [hg19:2:27529884-27529905:+] 0.5474 146 7 -21.89 -0.5063 MIMAT0004983 hsa-miR-940 57159 TRIM54 ccccuCGCCCCCGGGACGGAa |:| ||||||||| cugcuGUGACUGCCCUGCCUc 2 17 478 498 [hg19:2:27530231-27530251:+] 0.5058 152 7 -21.40 -0.2195 MIMAT0005871 hsa-miR-1207-5p 57159 TRIM54 gggGAGGGU-CGGA-GGGACGGu || |:: | || ||||||| acgCUGCUGUGACUGCCCUGCCu 2 19 475 497 [hg19:2:27530228-27530250:+] 0.5058 148 7 -21.62 -0.3078 MIMAT0005882 hsa-miR-548k 57159 TRIM54 ucGUU--UUAGGCGUUCAUGAAAa ||| ::||: | |||||||| gcCAACGGGUCUUC-AGUACUUUu 2 21 509 531 [hg19:2:27530262-27530284:+] 0.5058 153 7 -15.01 -0.7740 MIMAT0005914 hsa-miR-1262 57159 TRIM54 uaggaaGAUGUUUAAGUGGGUa | :||: ||||||| cagagaCCGCAGCAUCACCCAa 2 17 59 80 [hg19:2:27529812-27529833:+] 0.5624 148 7 -14.69 -0.3358 MIMAT0005916 hsa-miR-548n 57159 TRIM54 uguUUUAGGUGUUAAUGAAAAc :::||: ||: ||||||| aacGGGUCUUCAG-UACUUUUa 2 20 512 532 [hg19:2:27530265-27530285:+] 0.5058 153 7 -11.79 -0.6815 MIMAT0005936 hsa-miR-1278 57159 TRIM54 uaucuacuaUACGUGUCAUGAu :| : ||||||| agccaacggGUCUUCAGUACUu 2 14 508 529 [hg19:2:27530261-27530282:+] 0.5058 141 7 -12.14 -0.9540 MIMAT0005950 hsa-miR-1306 57159 TRIM54 guGGUGGUCUCGGUUGCa | || | |||||||| uaCGACAAAAGCCAACGg 2 17 499 516 [hg19:2:27530252-27530269:+] 0.5058 156 7 -18.76 -0.5573 MIMAT0006767 hsa-miR-1827 57159 TRIM54 uaaguuagauGACGGAGu ||||||| ugugacugccCUGCCUCu 2 9 482 499 [hg19:2:27530235-27530252:+] 0.5058 140 7 -14.40 -0.1812 MIMAT0014981 hsa-miR-3119 57159 TRIM54 cgGUAGUUUCAAUUUUCGGu | || | | ||||||| ugCCUCUACGACAAAAGCCa 2 19 493 512 [hg19:2:27530246-27530265:+] 0.5058 150 7 -14.84 -0.4451 MIMAT0015008 hsa-miR-3140 57159 TRIM54 ugauGGACUUA-AGG--GUUUUCGa |||| | | | ||||||| cugcCCUGCCUCUACGACAAAAGCc 2 19 487 511 [hg19:2:27530240-27530264:+] 0.5058 144 7 -16.26 -0.3690 MIMAT0015019 hsa-miR-3147 57159 TRIM54 agUGUGGGAGGAGUGACGGGUUGg |: :||| :||:||||||||| guAUCUCCU-UUCGCUGCCCAACc 2 23 134 156 [hg19:2:27529887-27529909:+] 0.5474 172 7 -34.80 -0.1905 MIMAT0015031 hsa-miR-3157 57159 TRIM54 ucuGACGUGAUCGGACCGACUu ||| :||: ||||||||| cacCUG-GCUGACCUGGCUGAa 2 20 376 396 [hg19:2:27530129-27530149:+] 0.5058 165 7 -27.19 -0.1225 MIMAT0015089 hsa-miR-3202 57159 TRIM54 uaauuucgagAAGA-GGGAAGGu | || ||||||| ccgcccaccaUCCUGCCCUUCCc 2 13 182 204 [hg19:2:27529935-27529957:+] 0.5388 143 7 -14.55 -0.1003 MIMAT0016853 hsa-miR-4300 57159 TRIM54 cuUCAUCAGGUCG-AGGGu || | || ||| |||| aaAGAACUCGAGCGUCCCa 2 17 110 128 [hg19:2:27529863-27529881:+] 0.5498 120 0 -15.96 -0.5087 MIMAT0016868 hsa-miR-4314 57159 TRIM54 gacaGGGUAAAGGGUCUc ||| |||||||| ccugCCC--UUCCCAGAa 2 15 193 208 [hg19:2:27529946-27529961:+] 0.5302 147 7 -20.26 -0.4164 MIMAT0016868 hsa-miR-4314 57159 TRIM54 gacaggguaaAGGGUCUc ||||||| aacucgagcgUCCCAGAc 2 9 114 131 [hg19:2:27529867-27529884:+] 0.5498 140 7 -16.40 -0.1211 MIMAT0016878 hsa-miR-4257 57159 TRIM54 gagucagggGUGGAGACc |||||||| ccuauugggCACCUCUGu 2 10 245 262 [hg19:2:27529998-27530015:+] 0.5302 145 7 -14.75 -0.1445 MIMAT0016900 hsa-miR-4270 57159 TRIM54 cggGAGGGGACUGA-GGGACu || |: ||||| ||||| acgCUGCUGUGACUGCCCUGc 2 18 475 495 [hg19:2:27530228-27530248:+] 0.5058 129 0 -24.91 -0.1761 MIMAT0000271 hsa-miR-214 57159 TRIM54 ugacGGACAGACACGGA-CGACa |||| ||| ||| |||| ugcaCCUGGCUG-ACCUGGCUGa 2 19 374 395 [hg19:2:27530127-27530148:+] 0.5058 124 0 -21.47 -0.1408 MIMAT0002874 hsa-miR-503 57159 TRIM54 gacgucuugaCAAGG--GCGACGAu ||||| ||||||| cuucccacggGUUCCCACGCUGCUg 2 14 459 483 [hg19:2:27530212-27530236:+] 0.5058 152 7 -22.12 -0.1243

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G034598 TRIM54 Homo sapiens 57159

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIM54 hsa-miR-3119 beg:502 end:513 pic:3' CGGTAGTTTCAATTTTCGGT 5'& |||||||| &5' ------------AAAAGCCA 3' TRIM54 hsa-miR-4257 beg:246 end:262 pic:3' GAGTCAGGGGTGGAGACC 5'& | | |||||||| &5' -TTGGG---CACCTCTG- 3' TRIM54 hsa-miR-4257 beg:320 end:339 pic:3' GAGTCAGGGG--TGGAGACC 5'& .|| || ||||||| &5' ---GGTGCCGGGACCTCTG- 3' TRIM54 hsa-miR-3190-3p beg:448 end:464 pic:3' GAGAGACCGGCAGATGGAAGGT 5'& |||| ||||||| &5' ------GGCCCC--ACCTTCC- 3' TRIM54 ebv-miR-BART14 beg:410 end:428 pic:3' TAGGGATGATGACGTCGTAAAT 5'& ||| | |||||||| &5' --CCCCCCA----CAGCATTT- 3' TRIM54 hsa-miR-579 beg:224 end:243 pic:3' TTAGCGCCAAATATGGTTTACTT 5'& |||| .||||||||| &5' ----GCGGAA---GCCAAATGAA 3' TRIM54 hsa-miR-1915 beg:282 end:300 pic:3' GGGCGGCGCAGCGGGACCCC 5'& ||| | ||||||||| &5' ---GCC-CAGCGCCCTGGG- 3' TRIM54 hsa-miR-3202 beg:191 end:204 pic:3' TAATTTCGAGAAGAGGGAAGGT 5'& || ||||||| &5' ---------CTG--CCCTTCC- 3' TRIM54 hsa-miR-886-5p beg:0 end:21 pic:3' GGCGAACTCGATTGAGGCTGGGC 5'& || || || || ||||||| &5' --GCCTGCGCCGAC-CCGACCC- 3' TRIM54 hsv1-miR-H8star beg:437 end:454 pic:3' ATATATGTCCCTGGCCCCCG 5'& .| || |||||||| &5' -----GCT-GGCCCGGGGGC 3' TRIM54 hsa-miR-940 beg:480 end:498 pic:3' CCCCTCGCCCCCGGGACGGAA 5'& |.| ||||||||| &5' -----GTGACTGCCCTGCCT- 3' TRIM54 hsa-miR-361-3p beg:209 end:226 pic:3' TTTAGTCTTAGTGTGGACCCCCT 5'& ||. | | ||||||| &5' ------GAGAC-CGTCTGGGGG- 3' TRIM54 kshv-miR-K12-11star beg:477 end:489 pic:3' GGATCTTTACAAATTCGACACTGG 5'& ||||||||. &5' ---------------GCTGTGACT 3' TRIM54 ebv-miR-BART21-5p beg:263 end:285 pic:3' CAATCAACGGAAG-----TGATCACT 5'& |||| |||.|||| &5' ------TGCCAGGAGCGAACTGGTGA 3' TRIM54 ebv-miR-BART3 beg:312 end:328 pic:3' TGTGGACCACTGATCACCACGC 5'& || |.| .||||||| &5' ------GG-GGC-GGTGGTGC- 3' TRIM54 hsa-miR-654-5p beg:174 end:192 pic:3' CGTGTACAAGACGC----CGGGTGGT 5'& ||| |||||||| &5' -----------GCGACCCGCCCACCA 3' TRIM54 hsa-miR-605 beg:335 end:355 pic:3' TCCTCTTCCGTGGTACCCTAAAT 5'& .|||. || |||||||. &5' -----GAGGT-CCTGGGGATTTG 3' TRIM54 hsa-miR-548k beg:512 end:532 pic:3' TCGTTTTAGGCGTTCATGAAAA 5'& ...||. | ||||||||| &5' ----GGGTCTTC-AGTACTTTT 3' TRIM54 hcmv-miR-UL148D beg:294 end:317 pic:3' GCCACTTCTTCCC-CTCCTGCT 5'& || |||||.|| ||||.||. &5' -GG-GAAGAGGGCCGAGGGCGG 3' TRIM54 hcmv-miR-UL22Astar beg:262 end:285 pic:3' GATGTTTGATCGTAAGACCACT 5'& |.| |||. ||||||| &5' -TGCCAGG-AGCGAACTGGTGA 3' TRIM54 hcmv-miR-US25-2-5p beg:49 end:69 pic:3' AGTAGGTGGACTTG--TCTGGCGA 5'& |.||| .| ||||||| &5' ------ATCTGCGCAGAGACCGC- 3' TRIM54 hsa-let-7b beg:477 end:499 pic:3' TTGGTG-TGTTGGAT-GATGGAGT 5'& | | . ||. ||.|||| &5' --CTGCTGTGACTGCCCTGCCTC- 3' TRIM54 hsa-let-7d beg:477 end:500 pic:3' TTGATACGT-TGGATGATGGAGA 5'& .||.|| .|| ||.||||| &5' -GCTGTGACTGCC--CTGCCTCT 3' TRIM54 hsa-miR-106b beg:514 end:531 pic:3' TAGACGTGACAGTCGTGAAAT 5'& |. || ||||.||||| &5' ----GT-CT-TCAGTACTTT- 3' TRIM54 hsa-miR-106b beg:409 end:430 pic:3' TAGACGTGACA-GTCGTGAAAT 5'& || |||||.|||. &5' ----GCCCCCCACAGCATTTTG 3' TRIM54 hsa-miR-1224-5p beg:452 end:477 pic:3' GGTGGAGGG---CTCAGGAGTG 5'& ||||||.|| |.||.| ||| &5' CCACCTTCCCACGGGTTCCCAC 3' TRIM54 hsa-miR-1225-5p beg:456 end:477 pic:3' GGGGGGTGACCCGGCATGGGTG 5'& |..||||| |||.. ||||| &5' CTTCCCAC-GGGTT---CCCAC 3' TRIM54 hsa-miR-1226 beg:267 end:285 pic:3' GATCCCTTGTGTCCCGACCACT 5'& |||.|. ||||||| &5' ----GGAGCGAA---CTGGTGA 3' TRIM54 hsa-miR-1228star beg:184 end:206 pic:3' GTGTGT-GGACGGGGGCGGGTG 5'& ||| || |||||||.. |||| &5' CAC-CATCCTGCCCTT-CCCA- 3' TRIM54 hsa-miR-1237 beg:217 end:242 pic:3' GACCCCCTGCC-TCGTCTTCCT 5'& |||||||.||| ||| || || &5' CTGGGGGGCGGAAGCCAAATGA 3' TRIM54 hsa-miR-1249 beg:296 end:321 pic:3' ACTTCTTCCC-C-CCCTTCCCGCA 5'& |||||.|| | ||| .||||| &5' -GAAGAGGGCCGAGGGCGGGGCG- 3' TRIM54 hsa-miR-125a-3p beg:437 end:461 pic:3' CCGA--GGGTTCTTGGAGTGGACA 5'& ||| |||..|..|| ||||| &5' -GCTGGCCCGGGGGCCCCACCT-- 3' TRIM54 hsa-miR-125a-5p beg:30 end:50 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& |.|. ||.|| ||.|||| &5' -CGCGC--TAGAG----TCGGGGA 3' TRIM54 hsa-miR-1262 beg:62 end:80 pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& | ||. ||||||| &5' ------CCGCAGCATCACCCA- 3' TRIM54 hsa-miR-1266 beg:330 end:350 pic:3' TCGGGACAAGATGTCGGGACTCC 5'& || |||. .|.||||.|| &5' ---CC---TCTGAGGTCCTGGGG 3' TRIM54 hsa-miR-1274a beg:156 end:175 pic:3' ACCG-CGGACTTGTCCCTG 5'& || |||||..| || &5' --GCAGCCTGGGCTTCGA- 3' TRIM54 hsa-miR-1281 beg:209 end:231 pic:3' CCCTCTCC----TCCTCCGCT 5'& |||| .||.||||. &5' --GAGACCGTCTGGGGGGCGG 3' TRIM54 hsa-miR-1289 beg:156 end:173 pic:3' TTTTACGTCTAAGGACCTGAGGT 5'& |||| |||||.||.| &5' -----GCAG---CCTGGGCTTC- 3' TRIM54 hsa-miR-1304 beg:155 end:176 pic:3' GTGTAGAGTGACATCGGAGTTT 5'& |.|| | ||| .||.||.|| &5' CGCAG--C-CTG-GGCTTCGAA 3' TRIM54 hsa-miR-1306 beg:496 end:516 pic:3' GTGGTGGTCTCGGTTGCA 5'& .|| || |||||||| &5' TACGACAAAAGCCAACG- 3' TRIM54 hsa-miR-1538 beg:156 end:171 pic:3' TCCTTGTCGTCGTCGGGCCCGGC 5'& ||||||.||||. &5' ----------GCAGCCTGGGCT- 3' TRIM54 hsa-miR-18astar beg:296 end:317 pic:3' GGTCTTC-CTCGTGAATCCCGTCA 5'& .|||| |.|| |||||.| &5' --GGAAGAGGGCCG--AGGGCGG- 3' TRIM54 hsa-miR-1908 beg:177 end:199 pic:3' CTGGTTAGCGGCA---GGGGCGGC 5'& |||| |||| .||.||| &5' GACC---CGCCCACCATCCTGCC- 3' TRIM54 hsa-miR-1908 beg:476 end:497 pic:3' CTGGTTAGCGGCA-----GGGGCGGC 5'& .||.|| |||.||| &5' -------TGCTGTGACTGCCCTGCC- 3' TRIM54 hsa-miR-1913 beg:215 end:232 pic:3' ACCGTCGTCGCCTCCCCCGTCT 5'& |. .||||||.|| &5' --------GTCTGGGGGGCGGA 3' TRIM54 hsa-miR-1913 beg:302 end:322 pic:3' ACCGTCGTCGCCTCCCCCGTCT 5'& ||| | ||. |||||.| &5' -GGCCGA---GGGCGGGGCGG- 3' TRIM54 hsa-miR-1914star beg:182 end:204 pic:3' GGAGGGTCACGCCCTGGGGAGG 5'& | |||| .|||.||| &5' -CGCCCACCATCCTGCCCTTCC 3' TRIM54 hsa-miR-1915 beg:330 end:350 pic:3' GGGCGGCGCAGCGGGACCCC 5'& || |.| |.||||||| &5' -CCTCTGAG--GTCCTGGGG 3' TRIM54 hsa-miR-193bstar beg:230 end:247 pic:3' AGTAGAGCGGGAGTTTTGGGGC 5'& ||| .|||||| &5' -------GCCAAATGAACCCC- 3' TRIM54 hsa-miR-196a beg:199 end:223 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ||||. ||| |||.|| .||. &5' CCCAG-AACCTGAGACCGTCTG 3' TRIM54 hsa-miR-20a beg:409 end:430 pic:3' GATGGAC-GTGATATTCGTGAAAT 5'& .|| ||| ||||.|||. &5' --GCCCCCCAC----AGCATTTTG 3' TRIM54 hsa-miR-20b beg:409 end:430 pic:3' GATGGAC-GTGATACTCGTGAAAC 5'& .|| ||| ||||.|||| &5' --GCCCCCCAC----AGCATTTTG 3' TRIM54 hsa-miR-220b beg:306 end:327 pic:3' TTCACAGTCTGTGCCACCACC 5'& .|| |.|. .|||||||| &5' GAGGG-CGGG-GCGGTGGTG- 3' TRIM54 hsa-miR-222 beg:252 end:275 pic:3' TGGGT-CAT--CGGTCTACATCGA 5'& |||. ||. |||||. ||| &5' ACCTCTGTGATGCCAGG---AGC- 3' TRIM54 hsa-miR-23astar beg:434 end:457 pic:3' TTTAGGGTAG--GGGTCCTTGGGG 5'& ||||. |||.||..|||| &5' ---TCCCGCTGGCCCGGGGGCCCC 3' TRIM54 hsa-miR-23bstar beg:269 end:290 pic:3' TTTAGTCGTACGGTC-CTTGGGT 5'& |||. | | ||.|||| &5' -----AGCGAACTGGTGAGCCCA 3' TRIM54 hsa-miR-27a beg:248 end:265 pic:3' CGCCTTGAATCGGTGACACTT 5'& |..| || |||||| &5' ---GGGCA---CCTCTGTGA- 3' TRIM54 hsa-miR-27b beg:248 end:265 pic:3' CGTCTTGAATCGGTGACACTT 5'& |..| || |||||| &5' ---GGGCA---CCTCTGTGA- 3' TRIM54 hsa-miR-27b beg:474 end:487 pic:3' CGTCTTGAATCGGTGACACTT 5'& || |||||| &5' ----------GCTGCTGTGA- 3' TRIM54 hsa-miR-2861 beg:179 end:201 pic:3' GGCGGGTGGC-GGTCCGGGG 5'& ||||||||| || ||||. &5' CCGCCCACCATCCT-GCCCT 3' TRIM54 hsa-miR-2861 beg:475 end:499 pic:3' GGCGGG--TGGCGGTCCGGGG 5'& |.||. ||.||| |||.| &5' CTGCTGTGACTGCCCTGCCTC 3' TRIM54 hsa-miR-296-3p beg:445 end:465 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& |.|.||| |||||. ||| &5' -GGGGGCC-CCACCTT-CCC-- 3' TRIM54 hsa-miR-3065-3p beg:507 end:529 pic:3' GAGGTTGTTATAGGAC-CACGACT 5'& |||||.. .||.| || || &5' --CCAACGG-GTCTTCAGTACT-- 3' TRIM54 hsa-miR-30astar beg:385 end:399 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& |.|.||||||| &5' -----------CTGGCTGAAAG 3' TRIM54 hsa-miR-30dstar beg:378 end:399 pic:3' CGTCGTTTGTAGACTGACTTTC 5'& .|| .|| |||.||||||| &5' --GGCTGAC--CTGGCTGAAAG 3' TRIM54 hsa-miR-30estar beg:376 end:399 pic:3' CGACAT-TTGTAGGCTGACTTTC 5'& ||| .|| |.|.||||||| &5' -CTGGCTGAC--CTGGCTGAAAG 3' TRIM54 hsa-miR-3115 beg:270 end:290 pic:3' TGGTTGATCATTTGGGTATA 5'& .| ||||.||.|.|||| &5' GCGAACTGGTGAGCCCA--- 3' TRIM54 hsa-miR-3119 beg:384 end:401 pic:3' CGGTAGTTTCAATTTTCGGT 5'& || .| |.|||||| &5' -CCT----GGCTGAAAGCC- 3' TRIM54 hsa-miR-3135 beg:155 end:170 pic:3' GTGACGTCAGAGTCGGATCCGT 5'& | ||||||.||| &5' ---------CGCAGCCTGGGC- 3' TRIM54 hsa-miR-3140 beg:489 end:511 pic:3' TGATGGACTTAAGGGTTTTCGA 5'& ||.||| ||||||| &5' -CTGCCTCTACGA-CAAAAGC- 3' TRIM54 hsa-miR-3141 beg:179 end:202 pic:3' AGGA-GGAGGT-GGGCGGGAG 5'& || || ||| ||.|||||. &5' -CCGCCCACCATCCTGCCCTT 3' TRIM54 hsa-miR-3141 beg:428 end:448 pic:3' AGGAGGA-GGTGGGCGGGAG 5'& ||| ||| ||.|. |||| &5' TCC-CCTCCCGCTGGCCC-- 3' TRIM54 hsa-miR-3147 beg:134 end:157 pic:3' AGTGTGGGAGG--AGTGACGGGTTGG 5'& .|||| ||.|||||||||| &5' ------TCTCCTTTCGCTGCCCAACC 3' TRIM54 hsa-miR-3151 beg:438 end:460 pic:3' TGGACTAGGGTAA-CGGGGTGG 5'& |||. |||. |||||||| &5' --CTGG-CCCGGGGGCCCCACC 3' TRIM54 hsa-miR-3172 beg:226 end:247 pic:3' ATTCCTGACGT----TTTGGGGT 5'& ||| || .|||||| &5' ---GGAA-GCCAAATGAACCCC- 3' TRIM54 hsa-miR-3176 beg:275 end:292 pic:3' GGCCATCAGGGTC-CGGTCA 5'& |.|||. ||||| || &5' CTGGTGAGCCCAGCGC---- 3' TRIM54 hsa-miR-3180-3p beg:478 end:499 pic:3' CCGGAGGC-CTT-CGAGGCGGGGT 5'& |.| || || |.|||.| &5' -----CTGTGACTGCCCTGCCTC- 3' TRIM54 hsa-miR-3181 beg:438 end:456 pic:3' GGCCGCGGCTCCCGGGCTA 5'& |.||| |||.|||||| &5' CTGGC-CCGGGGGCCC--- 3' TRIM54 hsa-miR-3181 beg:16 end:35 pic:3' GGCCGCGGCTCCCGGGCTA 5'& || || .|||| ||||| &5' CCTGC-TCGAGAGCCCG-- 3' TRIM54 hsa-miR-3187 beg:152 end:171 pic:3' GGCGCGTCGGGGTACCGGTT 5'& || |||||||. |||. &5' CCCCGCAGCCTG--GGCT-- 3' TRIM54 hsa-miR-3187 beg:144 end:165 pic:3' GGCGCGTCGGGGTACCGGTT 5'& |.|| || ||||. ||| &5' CTGCCCAACCCCGCAGCC-- 3' TRIM54 hsa-miR-3195 beg:81 end:98 pic:3' TTG-GGCCCGGGCCGCGC 5'& ..| |||| ||||| &5' GGCGCCGGCCCCGG---- 3' TRIM54 hsa-miR-3196 beg:474 end:495 pic:3' CTCCGGGGAC---GGCGGGGC 5'& ||. ||| |.||||.| &5' ---GCTGCTGTGACTGCCCTG 3' TRIM54 hsa-miR-326 beg:440 end:453 pic:3' GACCTCCTTCCCGGGTCTCC 5'& |||||.|.|| &5' ----------GGCCCGGGGG 3' TRIM54 hsa-miR-326 beg:292 end:316 pic:3' GACCTCCTTCCCGGGTCTC-C 5'& ||||. .|||||| ||.| | &5' CTGGGAAGAGGGCCGAGGGCG 3' TRIM54 hsa-miR-330-5p beg:431 end:452 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& ||| |.| |||||.|.|. &5' -CCTCC--CGCTGGCCCGGGGG 3' TRIM54 hsa-miR-331-3p beg:440 end:454 pic:3' AAGATCCTATCCGGGTCCCCG 5'& |||||.||||| &5' ----------GGCCCGGGGGC 3' TRIM54 hsa-miR-361-5p beg:264 end:285 pic:3' CATGGGGACCTCTAA-GACTATT 5'& |.|| |||| |||.|.| &5' -TGCCA--GGAGCGAACTGGTGA 3' TRIM54 hsa-miR-362-5p beg:155 end:178 pic:3' TGAGTGT-GGATCC-AAGGTTCCTAA 5'& |.|| |||.|| ||| |||| &5' ---CGCAGCCTGGGCTTCGAAGG--- 3' TRIM54 hsa-miR-365star beg:328 end:346 pic:3' TGTCGAC-GGGGACTTTCAGGGA 5'& | ||.||| |.||||. &5' ------GACCTCTG-AGGTCCT- 3' TRIM54 hsa-miR-373 beg:409 end:429 pic:3' TGTGGGGTTTTAGCTTCGTGAAG 5'& .|||| ||||.||. &5' --GCCCCCCAC----AGCATTTT 3' TRIM54 hsa-miR-376astar beg:35 end:58 pic:3' ATGAGTATCT--TCCTCTTAGATG 5'& .|| || .||||.||||.| &5' -GCTAG-AGTCGGGGAGGATCTGC 3' TRIM54 hsa-miR-423-5p beg:180 end:203 pic:3' TTTCAGAGCG------AGAGACGGGGAGT 5'& ||| || ||||||.|| &5' -------CGCCCACCATC-CTGCCCTTC- 3' TRIM54 hsa-miR-4258 beg:304 end:325 pic:3' GG-TTCCGCCACCGCC-CC 5'& || |.||||| ||||| || &5' CCGAGGGCGG-GGCGGTGG 3' TRIM54 hsa-miR-4263 beg:506 end:525 pic:3' CCGGT--TCCGTGAA-TCTTA 5'& |||| .||. ||| || &5' -GCCAACGGGT-CTTCAG--- 3' TRIM54 hsa-miR-4270 beg:193 end:214 pic:3' CGGGAGGGGACTGAGGGACT 5'& |||||.||| || ||||| &5' GCCCTTCCCAGAA--CCTGA 3' TRIM54 hsa-miR-4283 beg:394 end:417 pic:3' TTTGAGCGA------CTCGGGGT 5'& ||.| |||| ||||||| &5' AAGC-CGCTGTCTCGGAGCCCC- 3' TRIM54 hsa-miR-4284 beg:267 end:289 pic:3' TACCCCACTA---CACTCGGG 5'& || | || |||||||| &5' --GGAGCGAACTGGTGAGCCC 3' TRIM54 hsa-miR-4294 beg:473 end:493 pic:3' GGGACGACATCTGA-GGG 5'& | ||||||| |||| ||| &5' CGCTGCTGT-GACTGCCC 3' TRIM54 hsa-miR-4296 beg:407 end:422 pic:3' ACTCGGACTCGGGTGTA 5'& ||||| |||||| &5' -GAGCCC---CCCACA- 3' TRIM54 hsa-miR-4298 beg:388 end:411 pic:3' GACGGAGGA-GGAGGACAGGGTC 5'& ||. || |||||.|.| &5' --GCTGAAAGCCG-CTGTCTCGG 3' TRIM54 hsa-miR-4314 beg:191 end:208 pic:3' GACAGGGTAAAGGGTCTC 5'& ||| ||| |||||||| &5' CTG-CCC--TTCCCAGA- 3' TRIM54 hsa-miR-4319 beg:31 end:50 pic:3' CAC-CGAAACGAGTCCCT 5'& | ||| ||.|||| &5' --GCGCTAGAGTCGGGGA 3' TRIM54 hsa-miR-4329 beg:395 end:411 pic:3' CACCTTGATCCCAGAGTCC 5'& | .|| |||||.| &5' --GCCGCT---GTCTCGG- 3' TRIM54 hsa-miR-449a beg:142 end:152 pic:3' TGGTCGATTGTTATGTGACGGT 5'& |.||||| &5' --------------CGCTGCC- 3' TRIM54 hsa-miR-449b beg:142 end:152 pic:3' CGGTCGATTGTTATGTGACGGA 5'& |.||||| &5' --------------CGCTGCC- 3' TRIM54 hsa-miR-486-3p beg:179 end:201 pic:3' TAGGACA-TGACTCGACGGGGC 5'& || || ||||||. &5' --CCGCCCACCATCCTGCCCT- 3' TRIM54 hsa-miR-486-3p beg:478 end:499 pic:3' TAGGACA-TGACTCGACGGGGC 5'& |||| |||| |||||.| &5' ---CTGTGACTGCCCTGCCTC- 3' TRIM54 hsa-miR-488 beg:529 end:552 pic:3' CTGGTTCTTTATCGGAAAGTT 5'& |..|| ||||||.| ||. &5' -ATTAAAAAATAGTCACGCAG 3' TRIM54 hsa-miR-512-3p beg:408 end:428 pic:3' CTGGAGTCGATAC-TGTCGTGAA 5'& ||| ||||||.|| &5' ------AGCCCCCCACAGCATTT 3' TRIM54 hsa-miR-520a-3p beg:508 end:531 pic:3' TGTCAGGTTTCCCT----TCGTGAAA 5'& |||| ||| ||.||||| &5' -----CCAACGGGTCTTCAGTACTTT 3' TRIM54 hsa-miR-520d-3p beg:508 end:531 pic:3' TGGGTGGTTTCTCT----TCGTGAAA 5'& .|||| |.| ||.||||| &5' ----GCCAACGGGTCTTCAGTACTTT 3' TRIM54 hsa-miR-520d-3p beg:409 end:429 pic:3' TGGGTGGTTTCTCTTCGTGAAA 5'& .||| ||| ||||.||| &5' GCCCCCCAC-----AGCATTTT 3' TRIM54 hsa-miR-520h beg:418 end:431 pic:3' TGAGATTTCCCTTCGTGAAACA 5'& ||||.||||| &5' ------------AGCATTTTGT 3' TRIM54 hsa-miR-526bstar beg:512 end:532 pic:3' CGGAGATTTTCCT-----TCGTGAAAG 5'& ||. ||.|||||. &5' ----------GGGTCTTCAGTACTTTT 3' TRIM54 hsa-miR-593star beg:308 end:329 pic:3' CGACTCGTTACGGACCGACCACGGA 5'& |.||.. || || ||||||| &5' ---GGGCGGGGC--GG-TGGTGCC- 3' TRIM54 hsa-miR-604 beg:144 end:166 pic:3' CAGGACTTAA---GGCGTCGGA 5'& ||| ||||||||| &5' ---CTGCCCAACCCCGCAGCCT 3' TRIM54 hsa-miR-615-5p beg:435 end:457 pic:3' CTAGGC--TCGTGGCCCCTGGGGG 5'& ||| .|| ||||||.|||| &5' ---CCGCTGGC-CCGGGGGCCCC- 3' TRIM54 hsa-miR-625 beg:427 end:437 pic:3' CCTGATATCTTGAAAGGGGGA 5'& ||||||. &5' -------------TTCCCCT- 3' TRIM54 hsa-miR-629 beg:231 end:246 pic:3' TCAAGAGGGTTGCATTTGGGT 5'& |||| |.||||| &5' -------CCAAA-TGAACCC- 3' TRIM54 hsa-miR-629 beg:271 end:290 pic:3' TCAAGAGGGTTG--CATTTGGGT 5'& | ||| ||.|.|||| &5' -------CGAACTGGTGAGCCCA 3' TRIM54 hsa-miR-632 beg:458 end:479 pic:3' AGGGTGTCCTTCGTCTGTG 5'& ||||||.|| ||.| &5' TCCCACGGGTTCCC-ACGC 3' TRIM54 hsa-miR-636 beg:306 end:328 pic:3' ACGCCCGCCCTGCTCGTT-CGTGT 5'& | |||||||.|| | . || | &5' -GAGGGCGGGGCG-GTGGTGC-C- 3' TRIM54 hsa-miR-637 beg:193 end:207 pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& |||| ..||||| &5' -------GCCC-----TTCCCAG- 3' TRIM54 hsa-miR-645 beg:157 end:166 pic:3' AGTCGTCATGGTCGGATCT 5'& ||||||.| &5' ----------CAGCCTGG- 3' TRIM54 hsa-miR-650 beg:478 end:500 pic:3' CAGGACTCT--CGCGACGGAGGA 5'& ||| || || |||||||. &5' ---CTGTGACTGCCCTGCCTCT- 3' TRIM54 hsa-miR-718 beg:211 end:234 pic:3' GCT-GCGGGCCGCCCCGCCTTC 5'& || ||.|.|| |||||||||| &5' -GACCGTCTGG-GGGGCGGAAG 3' TRIM54 hsa-miR-744 beg:143 end:162 pic:3' ACGACAATCGGGATCGGGGCGT 5'& ||| |||| ||||||| &5' -GCT----GCCCAA-CCCCGCA 3' TRIM54 hsa-miR-760 beg:197 end:219 pic:3' AGGGGTGTCTGGGTCTC-GGC 5'& |.|||| | |||. ||| ||| &5' TTCCCAGA-ACCT-GAGACCG 3' TRIM54 hsa-miR-764 beg:361 end:382 pic:3' TCCTCCTGTTCACTCGTGGACG 5'& ||.| || ||||||| &5' -GGGGTCCACAT--GCACCTG- 3' TRIM54 hsa-miR-93 beg:510 end:531 pic:3' GATGGACGTGCTT----GTCGTGAAAC 5'& |||.. |||.||||| &5' --------ACGGGTCTTCAGTACTTT- 3' TRIM54 hsa-miR-93 beg:409 end:430 pic:3' GATGGACGTGCT-TGTCGTGAAAC 5'& || | ||||||.|||| &5' ------GCCCCCCACAGCATTTTG 3' TRIM54 hsa-miR-98 beg:479 end:499 pic:3' TTGTTATGTTGAAT-GATGGAGT 5'& |. ||| ||.|||| &5' -----TGTGACTGCCCTGCCTC- 3' TRIM54 hsv1-miR-H17 beg:484 end:506 pic:3' GGCGGAGCGCGGGGTCGCGGT 5'& |.||| | .|||.| || || &5' CTGCC-C-TGCCTCTACGACA 3' TRIM54 hsv1-miR-H3 beg:120 end:143 pic:3' CAGGGTT--GGCGTGTCAGGGTC 5'& ||||||. |||.|. |||. &5' GTCCCAGACCCGTATC-TCCT-- 3' TRIM54 hsv1-miR-H8star beg:211 end:226 pic:3' ATATATGTCCCTGGCCCCCG 5'& | |.||||| &5' ----------GTCTGGGGG- 3' TRIM54 hsv2-miR-H13 beg:476 end:495 pic:3' GTCACGAGCGTGAAACGGGATT 5'& |||| |.. ||||||. &5' ---TGCT-GTGAC-TGCCCTG- 3' TRIM54 hsv2-miR-H22 beg:178 end:202 pic:3' CGGGTGGGTGC-AGGTCTGGGGA 5'& |||.||||| ||| .|||.| &5' -CCCGCCCACCATCCT-GCCCTT 3' TRIM54 hsv2-miR-H24 beg:307 end:332 pic:3' TCCCGCCCC-CCTTCCGCGGCCTC 5'& ||||||||| || ||.|||||. &5' AGGGCGGGGCGGT-GGTGCCGGG- 3' TRIM54 kshv-miR-K12-2star beg:33 end:55 pic:3' GTCGAGATCGGGACCTTCTAG 5'& ||| ||.| |||.|||| &5' --GCTAGAGTCGGGGAGGATC 3' TRIM54 kshv-miR-K12-2star beg:80 end:105 pic:3' GTCGAGATCGGGA-CCTTCTAG 5'& |.|| | |||| |||.|||| &5' CGGCGCCGGCCCCGGGAGGATC 3' TRIM54 kshv-miR-K12-6-5p beg:464 end:484 pic:3' GGCTACCTAATCCA-CGACGACC 5'& ||.|| ||||||| &5' -----GGGTTCCCACGCTGCTG- 3' TRIM54 kshv-miR-K12-7star beg:311 end:328 pic:3' GTATTTAGGGGCAGGCCACCGCGA 5'& | | ||||||.|| &5' ---------CGGGGCGGTGGTGC- 3' TRIM54 kshv-miR-K12-8star beg:309 end:333 pic:3' TCGCCCCGCAATCACT-CCCTCA 5'& .|||||||| |.||| |||| &5' GGCGGGGCGGTGGTGCCGGGA-- 3' TRIM54 sv40-miR-S1-5p beg:181 end:203 pic:3' TTCCGAGTAA-AGTCCGGGGAGT 5'& || || || ||||.|| &5' ---GCCCACCATCCTGCCCTTC- 3' TRIM54 hsa-miR-3157 beg:371 end:397 pic:3' TCTGACGT-GATCG----GACCGACTT 5'& |||| ||.|| ||||||||| &5' ----TGCACCTGGCTGACCTGGCTGAA 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIM54 High_conserved miR-503 chr2:27505632 8-mer 64 CDS, 5pUTR TRIM54 High_conserved miR-503 chr2:27530236 7-mer-m8 11 3pUTR TRIM54 High_conserved miR-7/7ab chr2:27505766 8-mer 73 CDS, 5pUTR TRIM54 High_conserved miR-96/507/1271 chr2:27505755 7-mer-m8 60 CDS, 5pUTR TRIM54 High_conserved miR-138/138ab chr2:27528186 7-mer-m8 13 ncRNA TRIM54 High_conserved miR-139-5p chr2:27527708 7-mer-A1 18 ncRNA TRIM54 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr2:27505632 7-mer-A1 42 CDS, 5pUTR TRIM54 High_conserved let-7/98/4458/4500 chr2:27528192 8-mer 31 ncRNA TRIM54 High_conserved miR-187 chr2:27521538 7-mer-m8 9 CDS, 5pUTR TRIM54 High_conserved miR-1ab/206/613 chr2:27528089 7-mer-A1 13 ncRNA TRIM54 High_conserved miR-203 chr2:27505492 7-mer-A1 31 5pUTR TRIM54 High_conserved miR-204/204b/211 chr2:27505467 7-mer-m8 13 5pUTR TRIM54 High_conserved miR-204/204b/211 chr2:27505512 7-mer-A1 11 5pUTR TRIM54 High_conserved miR-122/122a/1352 chr2:27522126 7-mer-A1 49 CDS, 5pUTR TRIM54 High_conserved miR-24/24ab/24-3p chr2:27505502 7-mer-A1 11 5pUTR TRIM54 High_conserved miR-27abc/27a-3p chr2:27522248 7-mer-m8 60 CDS TRIM54 High_conserved miR-103a/107/107ab chr2:27528540 7-mer-A1 49 CDS, ncRNA TRIM54 High_conserved miR-103a/107/107ab chr2:27529185 7-mer-m8 18 CDS TRIM54 High_conserved miR-338/338-3p chr2:27527858 7-mer-m8 60 CDS, ncRNA TRIM54 High_conserved miR-338/338-3p chr2:27528516 7-mer-A1 53 CDS, ncRNA TRIM54 High_conserved miR-33ab/33-5p chr2:27528227 7-mer-A1 13 ncRNA TRIM54 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr2:27522263 7-mer-m8 47 CDS TRIM54 High_conserved miR-383 chr2:27528966 7-mer-A1 51 CDS, ncRNA TRIM54 High_conserved miR-128/128ab chr2:27521477 7-mer-m8 33 CDS, 5pUTR TRIM54 High_conserved miR-128/128ab chr2:27522247 7-mer-A1 60 CDS TRIM54 Medium_conserved miR-544/544ab/544-3p chr2:27505414 7-mer-A1 13 5pUTR TRIM54 Medium_conserved miR-590-3p chr2:27505271 8-mer 38 5pUTR TRIM54 Medium_conserved miR-149 chr2:27529128 7-mer-m8 31 CDS, ncRNA TRIM54 Medium_conserved miR-185/882/3473/4306/4644 chr2:27527638 8-mer 31 ncRNA TRIM54 Medium_conserved miR-197 chr2:27505715 7-mer-m8 62 CDS, 5pUTR TRIM54 Medium_conserved miR-202-3p chr2:27528192 7-mer-A1 29 ncRNA TRIM54 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr2:27528208 7-mer-A1 24 ncRNA TRIM54 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr2:27528497 8-mer 36 CDS, ncRNA TRIM54 Medium_conserved miR-296-3p chr2:27527760 7-mer-m8 16 ncRNA TRIM54 Medium_conserved miR-320abcd/4429 chr2:27528095 7-mer-m8 11 ncRNA TRIM54 Medium_conserved miR-324-5p chr2:27505641 8-mer 64 CDS, 5pUTR TRIM54 Medium_conserved miR-328a/328b-3p chr2:27527740 7-mer-m8 4 ncRNA TRIM54 Medium_conserved miR-329/329ab/362-3p chr2:27527822 7-mer-A1 11 ncRNA TRIM54 Medium_conserved miR-335/335-5p chr2:27527680 7-mer-A1 7 ncRNA TRIM54 Medium_conserved miR-346 chr2:27530307 7-mer-A1 2 3pUTR TRIM54 Medium_conserved miR-370 chr2:27521598 7-mer-A1 56 CDS, 5pUTR TRIM54 Medium_conserved miR-370 chr2:27528952 7-mer-m8 47 CDS, ncRNA TRIM54 Medium_conserved miR-382 chr2:27522453 8-mer 7 CDS TRIM54 Medium_conserved miR-450a/451a chr2:27528103 7-mer-A1 7 ncRNA TRIM54 Medium_conserved miR-491-5p chr2:27527615 7-mer-m8 11 ncRNA TRIM54 Medium_conserved miR-491-5p chr2:27530174 7-mer-A1 11 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIM54 RAID00642916 hsa-miR-6721-5p miRNA MIMAT0025852 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID01153291 hsa-miR-4520-5p miRNA MIMAT0019235 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID01640281 hsa-miR-4632-5p miRNA MIMAT0022977 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID02079630 hsa-miR-4532 miRNA MIMAT0019071 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID02108529 hsa-miR-6784-5p miRNA MIMAT0027468 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID02547426 hsa-miR-503-5p miRNA MIMAT0002874 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID03156314 hsa-miR-6879-5p miRNA MIMAT0027658 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID03850240 hsa-miR-214-3p miRNA MIMAT0000271 TRIM54 mRNA 57159 Prediction 0.1828 TRIM54 RAID03975080 hsa-miR-4288 miRNA MIMAT0016918 TRIM54 mRNA 57159 Prediction 0.1828