DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome RNF113B 3'UTR 359282598e BA091322 NM_178861 chr13:97626040-97626399:- RNF113B 5'UTR 359282598e CA143435 NM_178861 chr13:97626916-97627522:-

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence RNF113B; RNF161; ZNF183L1 ATTTA 30-998 1285-1289

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-RNF113B-antisense.1 NM_178861Tchr13:98806724-98865667 expressed RNF113B 140432 protein-coding + hsa_circ_0101102 hsa-circ-RNF113B-overlap.1 NM_178861Tchr13:98805386-98865667 expressed RNF113B 140432 protein-coding not_available not_available

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000071 hsa-miR-17* 140432 RNF113B gauguucacggAAGUGACGUCa |||||||||| gcacucccaugUUCACUGCAGa 2 12 136 157 [hg19:13:98828260-98828281:-] 0.5247 155 7 -17.17 -0.8156 MIMAT0009197 hsa-miR-205* 140432 RNF113B cuUGAAGUGAGG--UGACUUUAg || |||| | | |||||| agACGACACUGCUAAGUGAAAUa 2 20 339 361 [hg19:13:98828056-98828078:-] 0.5247 126 6 -13.49 -0.1122 MIMAT0004571 hsa-miR-200b* 140432 RNF113B agguuacGACGGGUCAUUCUAc |||:: |||||||| aagcagcCUGUUGAGUAAGAUg 2 16 33 54 [hg19:13:98828363-98828384:-] 0.5204 159 7 -22.90 -0.3708 MIMAT0004589 hsa-miR-30b* 140432 RNF113B cuUCAUUUGUAGGUG-GAGGGUc || |:::|| ::| |||||| aaAG-AGGUAUGUGCACUCCCAu 2 21 124 145 [hg19:13:98828272-98828293:-] 0.5240 122 6 -18.29 -0.3648 MIMAT0001620 hsa-miR-200a* 140432 RNF113B agGUCGUGACAGGCCAUUCUAc |||| ||||: ||||||| agCAGC-CUGUUGAGUAAGAUg 2 21 34 54 [hg19:13:98828363-98828383:-] 0.5204 166 7 -25.93 -0.3708 MIMAT0000714 hsa-miR-302b* 140432 RNF113B cuUUCGUGAAGGUACAAUUUCa ||| | ||| | |||||| ggAAGGAAAUCC-UUUUAAAGa 2 21 267 287 [hg19:13:98828130-98828150:-] 0.5247 130 6 -12.27 -0.1042 MIMAT0004685 hsa-miR-302d* 140432 RNF113B cgUUCACGGAGGUACAAUUUCa ||| ||| | |||||| ggAAGGAAAUCC-UUUUAAAGa 2 21 267 287 [hg19:13:98828130-98828150:-] 0.5247 122 6 -10.43 -0.1063 MIMAT0004757 hsa-miR-431* 140432 RNF113B ucUUCGGGACGUUCUGCUG-GAc :| ||:|| |||||||| || auGAACCUUG-AAGACGACACUg 2 21 328 349 [hg19:13:98828068-98828089:-] 0.5247 134 0 -27.61 -0.9132 MIMAT0001638 hsa-miR-409-5p 140432 RNF113B uacguuucaacgagccCAUUGGa |||||| ucccaugccugaguauGUAACCa 2 8 79 101 [hg19:13:98828316-98828338:-] 0.5233 120 6 -9.84 -0.1008 MIMAT0004764 hsa-miR-490-5p 140432 RNF113B ugGGUGGACCUCUA-GGUACc |: |||| | || ||||| guCUUCCUGCA-AUCCCAUGc 2 19 67 86 [hg19:13:98828331-98828350:-] 0.5233 120 0 -14.16 -0.4275 MIMAT0002813 hsa-miR-493* 140432 RNF113B uuacuUUCGGAUGGUACAUGUu |||:||: :||||||| gacucAAGUCUG-UAUGUACAc 2 18 5 25 [hg19:13:98828392-98828412:-] 0.5204 159 7 -15.56 -0.1882 MIMAT0002882 hsa-miR-510 140432 RNF113B cacUAACGGUGAGAGGACUCAu | | ||| : ||||||| ugcAAUCCCA--UGCCUGAGUa 2 20 74 93 [hg19:13:98828324-98828343:-] 0.5233 144 7 -19.49 -0.8757 MIMAT0003266 hsa-miR-598 140432 RNF113B acUGCUACUGUUGCUACUG-CAu | ||||| |: |||||| || guAAGAUGAGAGAGAUGACAGUc 2 21 47 69 [hg19:13:98828348-98828370:-] 0.5218 136 0 -17.69 -0.4285 MIMAT0003296 hsa-miR-627 140432 RNF113B aggagaaaagaaUCUCUGAGUg | ||||||| -----------gAAAGACUCAa 2 11 1 11 [hg19:13:98828406-98828416:-] 0.5204 142 7 -10.07 -0.5324 MIMAT0003298 hsa-miR-629* 140432 RNF113B cgACCCGAAUG-CAACCCUCUUg || : ||| | ||||||| ucUGUAUGUACACUGGGGAGAAg 2 21 13 35 [hg19:13:98828382-98828404:-] 0.5204 147 7 -17.21 -0.2345 MIMAT0004909 hsa-miR-450b-5p 140432 RNF113B auAAGUCCUUGUAUAACGUUUu | ||| | :|| ||||||| acUGCAGAAUUAU-UUGCAAAa 2 21 150 170 [hg19:13:98828247-98828267:-] 0.5247 158 7 -12.60 -0.9681 MIMAT0004919 hsa-miR-541* 140432 RNF113B ucacccUGGCUGUCGUCUUAGGAAa || |: || | ||||||| gccuuaACGGGAAGGA-AAUCCUUu 2 20 258 281 [hg19:13:98828136-98828159:-] 0.5247 153 7 -15.45 -0.7976 MIMAT0004956 hsa-miR-374b* 140432 RNF113B uuacuaUUAUGUUG-GACGAUUc || ||:|| ||||||| accuugAAGACGACACUGCUAAg 2 17 332 354 [hg19:13:98828063-98828085:-] 0.5247 159 7 -20.30 -0.6914 MIMAT0004974 hsa-miR-924 140432 RNF113B cguucuguagugUUCUGAGa ||||||| ----------gaAAGACUCa 2 9 1 10 [hg19:13:98828407-98828416:-] 0.5204 140 7 -8.64 -0.6347 MIMAT0005824 hsa-miR-1179 140432 RNF113B gguUG-GUUACUUUCUUACGAa || ||||| ||||||| cacACACAAUG---GAAUGCUa 2 19 235 253 [hg19:13:98828164-98828182:-] 0.5247 149 7 -13.38 -1.0187 MIMAT0009979 hsa-miR-2054 140432 RNF113B uuaUUUAAUUUAAAUAUA-AUGUc :| | ||:| |:||| |||| aaaGACUCAAGUCUGUAUGUACAc 2 21 2 25 [hg19:13:98828392-98828415:-] 0.5204 128 0 -6.53 -0.2326 MIMAT0014980 hsa-miR-3118 140432 RNF113B ucUUAAAAGUAUUACGUCAGUGu || | |||| :|||||| cuAAGUGAAAUAAACUAGUCACa 2 22 350 372 [hg19:13:98828045-98828067:-] 0.5247 141 6 -13.05 -0.2514 MIMAT0014981 hsa-miR-3119 140432 RNF113B cggUAGUUUCAAUUUUCGGu ||:| ||||||| agaAUUAUUUGCAAAAGCCa 2 18 155 174 [hg19:13:98828243-98828262:-] 0.5247 141 7 -10.54 -0.6951 MIMAT0015008 hsa-miR-3140 140432 RNF113B ugauggacuUAAGGGUUUUCGa |||: ||||||| ugcagaauuAUUUGCAAAAGCc 2 14 152 173 [hg19:13:98828244-98828265:-] 0.5247 153 7 -12.02 -0.5388 MIMAT0015038 hsa-miR-3164 140432 RNF113B gcgguaaagggaauuUCAGUGu |||||| uaagugaaauaaacuAGUCACa 2 8 351 372 [hg19:13:98828045-98828066:-] 0.5247 120 6 -11.01 -0.2581 MIMAT0015042 hsa-miR-3167 140432 RNF113B ugUGGUCAUAAAGACUUUAGGa |||| | :|||||||| uaACCAAAAGAAUUGAAAUCCg 2 21 96 117 [hg19:13:98828300-98828321:-] 0.5233 156 7 -15.73 -0.8129 MIMAT0015042 hsa-miR-3167 140432 RNF113B uguggucauaaagaCUUUAGGa ||||||| gccuuaacgggaagGAAAUCCu 2 9 258 279 [hg19:13:98828138-98828159:-] 0.5247 140 7 -13.95 -0.7331 MIMAT0016895 hsa-miR-2355 140432 RNF113B aaCAGGUA-ACAU-AGACCCCUa |||::| |||| ||||||| aaGUCUGUAUGUACACUGGGGAg 2 20 10 32 [hg19:13:98828385-98828407:-] 0.5204 161 7 -21.93 -0.4402 MIMAT0016920 hsa-miR-4289 140432 RNF113B acUAUCGGGACGUGUUACg ||| | ||||||| cgAUACACACACACAAUGg 2 18 228 246 [hg19:13:98828171-98828189:-] 0.5247 145 7 -11.35 -0.8189 MIMAT0000231 hsa-miR-199a-5p 140432 RNF113B cuuGUCCA-UCAGACUUGUGACCc || || || || ||||||| acuCAAGUCUGUAUGUACACUGGg 2 21 6 29 [hg19:13:98828388-98828411:-] 0.5204 159 7 -24.99 -0.1729 MIMAT0000252 hsa-miR-7 140432 RNF113B ugUUGUUUUAGUGAUCAGAAGGu |: :|:|| || |||||||| ugAGAGAGAUGAC-AGUCUUCCu 2 22 53 74 [hg19:13:98828343-98828364:-] 0.5218 163 7 -18.20 -0.4624 MIMAT0000263 hsa-miR-199b-5p 140432 RNF113B cuugUCUAUCAGAUUUGUGACCc || || |: ||||||| cucaAGUCUGUAUGUACACUGGg 2 20 7 29 [hg19:13:98828388-98828410:-] 0.5204 151 7 -23.36 -0.1746 MIMAT0000447 hsa-miR-134 140432 RNF113B ggggagaccAGUUGGUCAGUGu | |||:|||||| uaagugaaaUAAACUAGUCACa 2 14 351 372 [hg19:13:98828045-98828066:-] 0.5247 141 6 -19.00 -0.2536 MIMAT0000452 hsa-miR-154 140432 RNF113B gcuuccGUUGUGCCUA-UUGGAu |||| | || ||||| augcuaCAACUAGAAUGAACCUu 2 17 314 336 [hg19:13:98828081-98828103:-] 0.5247 120 0 -10.48 -0.5264 MIMAT0000688 hsa-miR-301a 140432 RNF113B cgAAACUGUUAUGAUA-ACGUGAc | | | |: : ||| |||||| gaUCUCAAAGAGGUAUGUGCACUc 2 22 118 141 [hg19:13:98828276-98828299:-] 0.5240 121 6 -10.87 -0.5783 MIMAT0000738 hsa-miR-383 140432 RNF113B ucgguguuaguggaaGACUAGa |||||| uuuuaaagauuuaaaCUGAUCc 2 8 279 300 [hg19:13:98828117-98828138:-] 0.5247 120 6 -8.52 -0.1281 MIMAT0002870 hsa-miR-499-5p 140432 RNF113B uuuguagUGACGUUCAGA-AUu ||| ||||||| || --gaaagACU-CAAGUCUGUAu 2 15 1 19 [hg19:13:98828398-98828416:-] 0.5204 120 0 -11.02 -0.4565 MIMAT0003164 hsa-miR-544 140432 RNF113B cuuGAACGAUUUUUACGUCUUa | ||:| | ||||||| uccCAUGUU--CACUGCAGAAu 2 20 140 159 [hg19:13:98828258-98828277:-] 0.5247 144 7 -10.90 -0.6199 MIMAT0003339 hsa-miR-421 140432 RNF113B cgcggguuaauuaCAGACAACUa | ||||||| cuggggagaagcaGCCUGUUGAg 2 11 25 47 [hg19:13:98828370-98828392:-] 0.5204 142 7 -10.40 -0.4008 MIMAT0003879 hsa-miR-758 140432 RNF113B ccaaUCACCUGGUCCAGUGUUu | | ||:| ||||||| gugaAAUAAACUA-GUCACAAa 2 19 354 374 [hg19:13:98828043-98828063:-] 0.5247 148 7 -13.61 -1.1664 MIMAT0003885 hsa-miR-454 140432 RNF113B ugGGAUAUUCGUUAUA-ACGUGAu :|| ||| ::||| |||||| gaUCUCAAAGAGGUAUGUGCACUc 2 22 118 141 [hg19:13:98828276-98828299:-] 0.5240 133 6 -13.74 -0.5674 MIMAT0004922 hsa-miR-875-5p 140432 RNF113B guGGACUAUUUUGACUCCAUAu || ||| | ||||||| auCCGGAUCUCAAAGAGGUAUg 2 21 113 134 [hg19:13:98828283-98828304:-] 0.5233 152 7 -14.79 -0.5698 MIMAT0004924 hsa-miR-876-5p 140432 RNF113B accacuaagugUUUCUUUAGGu ||:||||||| gccuuaacgggAAGGAAAUCCu 2 12 258 279 [hg19:13:98828138-98828159:-] 0.5247 151 7 -12.71 -0.7405 MIMAT0004924 hsa-miR-876-5p 140432 RNF113B accacuaaguguuuCUUUAGGu ||||||| uaaccaaaagaauuGAAAUCCg 2 9 96 117 [hg19:13:98828300-98828321:-] 0.5233 140 7 -10.60 -0.8307 MIMAT0004953 hsa-miR-873 140432 RNF113B uccucUGAGUGUUCAAG-GACg |||| || |||| ||| ugugcACUCCCAUGUUCACUGc 2 17 133 154 [hg19:13:98828263-98828284:-] 0.5240 128 0 -16.77 -0.3728

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G049934 RNF113B Homo sapiens 140432

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End RNF113B; RNF161; ZNF183L1 1 378 100 5.01 - chr13 98828038 98828416

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile RNF113B hsa-miR-17star beg:142 end:157 pic:3' GATGTTCACGGAAGTGACGTCA 5'& . |||||||||| &5' ---------TGTTCACTGCAG- 3' RNF113B hsa-miR-493star beg:7 end:25 pic:3' TTACTTTCGGATGGTACATGTT 5'& |||.||. .||||||| &5' -----AAGTCTG-TATGTACA- 3' RNF113B ebv-miR-BHRF1-2star beg:142 end:161 pic:3' CGATAGACGACGT--TGTCTTAAA 5'& ||.| || .||||||| &5' ------TGTT-CACTGCAGAATT- 3' RNF113B hsa-miR-510 beg:78 end:94 pic:3' CACTAACGGTGAGAGGACTCAT 5'& |||. |||||||| &5' -------CCATG--CCTGAGTA 3' RNF113B ebv-miR-BART6-5p beg:240 end:264 pic:3' GGATACCTAACCTGG--TTGGAAT 5'& ||||| || |.||||| &5' ---ATGGAATGCTATTAAGCCTTA 3' RNF113B hsa-miR-3167 beg:105 end:117 pic:3' TGTGGTCATAAAGACTTTAGGA 5'& .|||||||| &5' ------------TTGAAATCC- 3' RNF113B hsa-miR-1179 beg:234 end:253 pic:3' GGTTGGTTACTTTCTTACGAA 5'& || ||||| ||||||| &5' -CACACAATG---GAATGCT- 3' RNF113B hsa-miR-200bstar beg:35 end:55 pic:3' AGGTTAC-GACGGGTCATTCTAC 5'& | |||.. ||||||||| &5' ------GCCTGTTGAGTAAGATG 3' RNF113B hsa-miR-758 beg:360 end:375 pic:3' CCAATCACCTGGTCCAGTGTTT 5'& ||.| |||||||| &5' ---------ACTA-GTCACAAA 3' RNF113B hsa-miR-7 beg:55 end:74 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& .|.|| || |||||||| &5' -----GAGATGAC-AGTCTTCC- 3' RNF113B hcmv-miR-US4 beg:130 end:149 pic:3' TAGGGGGACGTGCAGGTACAGC 5'& . ||||| ||||||. &5' -----TGTGCACTCCCATGTT- 3' RNF113B hiv1-miR-TAR-5p beg:40 end:62 pic:3' AGTCTAGAC-CAGATTGGTCTCTCT 5'& .|| || .|. ||||||| &5' ------TTGAGTAAGATGAGAGAGA 3' RNF113B hsa-let-7f-2star beg:0 end:21 pic:3' CCTTTCTGTCATCTGACATATC 5'& ||||||| || ||||||. &5' -GAAAGACTCAAGTCTGTATG- 3' RNF113B hsa-miR-103-2star beg:17 end:37 pic:3' GTTCCGTCGTGACATTTCTTCGA 5'& |.| ||||| .|||||| &5' ----GTA-CACTGGGGAGAAGC- 3' RNF113B hsa-miR-1178 beg:22 end:51 pic:3' GATCCCTTCTTGTC-----ACTCGTT 5'& ||.|||| |.||| ||||.|| &5' CTGGGGAGAAGCAGCCTGTTGAGTAA 3' RNF113B hsa-miR-1226 beg:24 end:47 pic:3' GATCCCTTG-TGTCCCGACCACT 5'& ||.||||. .||| ||| ||| &5' CTGGGGAGAAGCAGC-CTGTTGA 3' RNF113B hsa-miR-1262 beg:275 end:295 pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& |||||.|| |.|||.| | &5' -TCCTTTTAAAGATTTAAAC-- 3' RNF113B hsa-miR-1286 beg:64 end:78 pic:3' TCCCGAGTAGAACCAGGACGT 5'& .||| ||||||| &5' -------GTCT---TCCTGCA 3' RNF113B hsa-miR-1305 beg:96 end:114 pic:3' AGAGAGGGTAATCTCAACTTTT 5'& ||| ||| |||||| &5' ------CCAAAAGAATTGAAA- 3' RNF113B hsa-miR-135a beg:20 end:41 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& ||| |.||.| ||. |||| &5' -CAC-TGGGGAGAAGCAGCC--- 3' RNF113B hsa-miR-135b beg:20 end:41 pic:3' AGTGTATCCTTACTTT-TCGGTAT 5'& ||| |.||.| |||. |||| &5' -CAC-TGGGGA-GAAGCAGCC--- 3' RNF113B hsa-miR-142-3p beg:330 end:351 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& || |.||| .|||||.| &5' -CCTTGAAGAC---GACACTGC- 3' RNF113B hsa-miR-142-3p beg:139 end:156 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& ||||. ||||.|| &5' -CCATGTT--------CACTGCA 3' RNF113B hsa-miR-1825 beg:24 end:43 pic:3' CCTCTCCTCC-CGTGACCT 5'& ||.||| || || ||| &5' GGGGAGAAGCAGC-CTG-- 3' RNF113B hsa-miR-1909 beg:59 end:77 pic:3' GCCACTCGTGGGCCGGGGACGC 5'& | ||| || .| ..||||| &5' -GATGA-CAGTC--TTCCTGC- 3' RNF113B hsa-miR-1911star beg:55 end:76 pic:3' CCTCTGGTGTTAC--GGACCAC 5'& ||||. |||.| |||| &5' -GAGATGACAGTCTTCCTG--- 3' RNF113B hsa-miR-199a-5p beg:9 end:30 pic:3' CTTGTCCATCAGACT----TGTGACCC 5'& |||||| |||||||| &5' --------AGTCTGTATGTACACTGGG 3' RNF113B hsa-miR-199b-5p beg:8 end:30 pic:3' CTTGTCTATCAGATT----TGTGACCC 5'& |||||. |||||||| &5' --------AGTCTGTATGTACACTGGG 3' RNF113B hsa-miR-200astar beg:33 end:55 pic:3' AGGTCGTGACAGGCCATTCTAC 5'& |||| ||||. |||||||| &5' --CAGC-CTGTTGAGTAAGATG 3' RNF113B hsa-miR-202 beg:76 end:97 pic:3' AAGGGTACGGGA-TATGGAGA 5'& |||||||||. .||. | &5' -TCCCATGCCTGAGTATGT-- 3' RNF113B hsa-miR-2113 beg:351 end:375 pic:3' CACTGTCTC-GGTTCGTGTTTA 5'& |||| |.|. |||||| &5' GTGAAATAAACTAGTCACAAA- 3' RNF113B hsa-miR-2355 beg:11 end:32 pic:3' AACAGGTA-ACATA-GACCCCTA 5'& |||..| |||| ||||||| &5' --GTCTGTATGTACACTGGGGA- 3' RNF113B hsa-miR-27astar beg:247 end:263 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& || .||||||.| &5' ---------GCTATTAAGCCTT 3' RNF113B hsa-miR-3140 beg:153 end:173 pic:3' TGATGGACT---TAAGGGTTTTCGA 5'& || |||. ||||||| &5' -------GAATTATTTGCAAAAGC- 3' RNF113B hsa-miR-3167 beg:262 end:280 pic:3' TGTGGTCATAAAGACTTTAGGA 5'& |.| |||||||| &5' ----CGGGAAG---GAAATCCT 3' RNF113B hsa-miR-3169 beg:49 end:72 pic:3' GATACACGGTTCG--TGTCAGGAT 5'& ||| | .|| ||||||.| &5' --ATGAGA-GAGATGACAGTCTT- 3' RNF113B hsa-miR-3181 beg:69 end:91 pic:3' GGCCGC--GGCTCCCGGGCTA 5'& || || || |||.|| &5' CCTGCAATCCCAT-GCCTGA- 3' RNF113B hsa-miR-331-5p beg:67 end:90 pic:3' CCTAGGGACCCT--GGTATGGATC 5'& |.|||| ||||.|||. &5' ---TTCCTGCAATCCCATGCCTG- 3' RNF113B hsa-miR-34a beg:330 end:353 pic:3' TGTTGGT-CGATT-CTGTGACGGT 5'& |||| | .| ||||||||.| &5' --AACCTTGAAGACGACACTGCTA 3' RNF113B hsa-miR-4287 beg:16 end:34 pic:3' TTTCACGGGAGTTCCCTCT 5'& || | | .|||||| &5' ----TGTACACTGGGGAGA 3' RNF113B hsa-miR-4289 beg:226 end:246 pic:3' ACTATCGGGACGTGTTACG 5'& |||| | ||||||| &5' -GATACACACACACAATG- 3' RNF113B hsa-miR-450b-5p beg:142 end:171 pic:3' ATAAGTC----CTTGTATAACGTTTT 5'& |.|||| |||. |||||||| &5' TGTTCACTGCAGAATTATTTGCAAAA 3' RNF113B hsa-miR-488 beg:267 end:285 pic:3' CTGGTTCTTTATCGGAAAGTT 5'& |.||||| |||||.|| &5' ----AGGAAAT--CCTTTTAA 3' RNF113B hsa-miR-500star beg:168 end:184 pic:3' GTCTTAGGAACGGG--TCCACGTA 5'& ||| |||||.| &5' ----------GCCAAGAGGTGTA- 3' RNF113B hsa-miR-507 beg:163 end:186 pic:3' AAGTGA--GGTTTTCCACGTTTT 5'& || ||||.|||||.||| &5' --CAAAAGCCAAGAGGTGTAAA- 3' RNF113B hsa-miR-510 beg:27 end:50 pic:3' CACTAA-CGGTGAGAGGACTCAT 5'& || || .| || .|||||| &5' --GAGAAGCAGC-CTGTTGAGTA 3' RNF113B hsa-miR-518e beg:18 end:40 pic:3' GTGAGACTTCCCTTCG-CGAAA 5'& .|| |||..| ||||| || &5' TACACTGGGGAGAAGCAGC--- 3' RNF113B hsa-miR-541star beg:263 end:282 pic:3' TCACCCTGGCTGTCGTCTTAGGAAA 5'& |||| .| |||||||| &5' ---GGGAA----GGA--AATCCTTT 3' RNF113B hsa-miR-544 beg:142 end:160 pic:3' CTTGAACGATTTTTACGTCTTA 5'& ||.| |||||||| &5' -----TGTTCAC--TGCAGAAT 3' RNF113B hsa-miR-557 beg:168 end:187 pic:3' TCTGTTCCGGGTGGGCACGTTTG 5'& ||| |||.|||| &5' -------GCCAAGAGGTGTAAAC 3' RNF113B hsa-miR-578 beg:244 end:272 pic:3' TGTTAGGATC--TCG----TGTTCTTC 5'& ||| ||| ||| ||..|||| &5' --AATGCTATTAAGCCTTAACGGGAAG 3' RNF113B hsa-miR-579 beg:337 end:359 pic:3' TTAGC-GCCAAATATGGTTTACTT 5'& | || |.|.||.|||| &5' ----GACGACAC-TGCTAAGTGAA 3' RNF113B hsa-miR-587 beg:232 end:249 pic:3' CACTGAGTAGTG-GATACCTTT 5'& || ||| | |||||| &5' ------CA-CACACAATGGAA- 3' RNF113B hsa-miR-593 beg:74 end:92 pic:3' TCTTTGGGGT-CGT-CTCTGT 5'& | ||.|||| || ||| &5' -GCAATCCCATGCCTGAG--- 3' RNF113B hsa-miR-609 beg:47 end:71 pic:3' TCTCTACTCTCT---TTGTGGGA 5'& |||||||||| .||| .|| &5' --AGATGAGAGAGATGACAGTCT 3' RNF113B hsa-miR-640 beg:295 end:313 pic:3' TCTCCGTCCAAGGA-----CCTAGTA 5'& |||| |||||| &5' ----------TCCTTTTAAGGATCA- 3' RNF113B hsa-miR-769-3p beg:62 end:84 pic:3' TTGGTTCTGGGGCCTCTAGGGTC 5'& .|| .||.| |||||| &5' GACAGTCTTCCTGCA-ATCCCA- 3' RNF113B hsa-miR-876-5p beg:264 end:279 pic:3' ACCACTAAGTGTTTCTTTAGGT 5'& . ||.||||||| &5' ---------GGAAGGAAATCC- 3' RNF113B hsa-miR-942 beg:14 end:36 pic:3' GTGTACCGGTTTTGTCTCTTCT 5'& .||| || . .|||||| &5' --TATGTACACTGGGGAGAAG- 3' RNF113B hsv2-miR-H20 beg:88 end:104 pic:3' TCTTTCCCCAGGCATTGGTTT 5'& || .||||||||| &5' --------GTATGTAACCAAA 3' RNF113B kshv-miR-K12-10a beg:330 end:349 pic:3' CGGTGAGCCCCCCTGTTGTGAT 5'& | ||.| |||.|||||. &5' --C-CTTGAA--GACGACACTG 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region RNF113B High_conserved miR-503 chr13:98828619 8-mer 24 CDS RNF113B High_conserved miR-7/7ab chr13:98828343 7-mer-m8 11 3pUTR RNF113B High_conserved miR-9/9ab chr13:98828574 7-mer-A1 20 CDS RNF113B High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr13:98828639 7-mer-m8 4 CDS RNF113B High_conserved miR-144 chr13:98828782 7-mer-A1 4 CDS RNF113B High_conserved miR-150/5127 chr13:98828815 7-mer-A1 11 CDS RNF113B High_conserved miR-150/5127 chr13:98829504 7-mer-m8 4 5pUTR RNF113B High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr13:98828619 7-mer-A1 24 CDS RNF113B High_conserved miR-18ab/4735-3p chr13:98829431 7-mer-m8 22 CDS RNF113B High_conserved miR-199ab-5p chr13:98828388 7-mer-m8 7 3pUTR RNF113B High_conserved miR-101/101ab chr13:98828782 7-mer-A1 4 CDS RNF113B High_conserved miR-33a-3p/365/365-3p chr13:98828670 7-mer-A1 22 CDS RNF113B High_conserved miR-128/128ab chr13:98828929 7-mer-m8 11 CDS RNF113B Medium_conserved miR-544/544ab/544-3p chr13:98828258 7-mer-m8 0 3pUTR RNF113B Medium_conserved miR-544/544ab/544-3p chr13:98828536 7-mer-m8 9 CDS RNF113B Medium_conserved miR-758 chr13:98828043 8-mer 13 3pUTR RNF113B Medium_conserved miR-134/3118 chr13:98828045 7-mer-A1 13 3pUTR RNF113B Medium_conserved miR-874 chr13:98828945 7-mer-m8 4 CDS RNF113B Medium_conserved miR-875-5p chr13:98828283 7-mer-m8 11 3pUTR RNF113B Medium_conserved miR-876-5p/3167 chr13:98828138 7-mer-m8 16 3pUTR RNF113B Medium_conserved miR-876-5p/3167 chr13:98828300 7-mer-m8 13 3pUTR RNF113B Medium_conserved miR-370 chr13:98829141 7-mer-A1 7 CDS RNF113B Medium_conserved miR-421 chr13:98828370 7-mer-m8 11 3pUTR RNF113B Medium_conserved miR-486-5p/3107 chr13:98829205 7-mer-m8 9 CDS RNF113B Medium_conserved miR-494 chr13:98828719 7-mer-A1 27 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RNF113B RAID00016146 hsa-miR-1179 miRNA MIMAT0005824 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID00489438 hsa-miR-544a miRNA MIMAT0003164 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID00489965 hsa-miR-450b-5p miRNA MIMAT0004909 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID00613177 hsa-miR-154-5p miRNA MIMAT0000452 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID00739015 hsa-miR-7-5p miRNA MIMAT0000252 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID00840498 hsa-miR-876-5p miRNA MIMAT0004924 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID01119830 hsa-miR-134-5p miRNA MIMAT0000447 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID01451180 hsa-miR-510-5p miRNA MIMAT0002882 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID01844687 hsa-miR-758-3p miRNA MIMAT0003879 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID02297801 hsa-miR-454-3p miRNA MIMAT0003885 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID02339118 hsa-miR-875-5p miRNA MIMAT0004922 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID02578276 hsa-miR-301a-3p miRNA MIMAT0000688 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID02615788 hsa-miR-873-5p miRNA MIMAT0004953 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID03180022 hsa-miR-499a-5p miRNA MIMAT0002870 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID03234701 hsa-miR-199a-5p miRNA MIMAT0000231 RNF113B mRNA 140432 Prediction 0.2202 RNF113B RAID03577883 hsa-miR-421 miRNA MIMAT0003339 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID03771442 hsa-miR-383-5p miRNA MIMAT0000738 RNF113B mRNA 140432 Prediction 0.1828 RNF113B RAID03988105 hsa-miR-199b-5p miRNA MIMAT0000263 RNF113B mRNA 140432 Prediction 0.1828