DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome NPHP1 3'UTR 777929ef26 BA073014 NM_000272 chr2:110238205-110319833:- NPHP1 3'UTR deca537b81 BA073015 NM_000272 chr2:110237177-110319833:- NPHP1 3'UTR 3cd31d366b BA073016 NM_000272 chr2:110238205-110319833:- NPHP1 3'UTR 2838ad0352 BA073017 NM_000272 chr2:110238205-110319833:- NPHP1 3'UTR 81d8023f8c BA073018 NM_000272 chr2:110238205-110319833:- NPHP1 3'UTR 72d5602a18 BA073019 NM_000272 chr2:110238575-110319833:- NPHP1 3'UTR b329fdd089 BA073020 NM_000272 chr2:110238439-110319833:- NPHP1 3'UTR 1f8941ef48 BA073021 NM_000272 chr2:110237177-110319833:- NPHP1 3'UTR d9eacef596 BA073022 NM_000272 chr2:110237177-110319833:- NPHP1 3'UTR d29e12c80e BA073023 NM_000272 chr2:110238575-110319833:- NPHP1 3'UTR 77fa53ff2d BA073024 NM_000272 chr2:110274778-110319833:- NPHP1 3'UTR fda4045f52 NM_000272 chr2:110243818-110276562:- NPHP1 3'UTR fee2571bfa NM_000272 chr2:110274778-110277970:- NPHP1 3'UTR 133199b10c NM_000272 chr2:110292914-110319833:- NPHP1 3'UTR 896ecc18d1 NM_000272 chr2:110238575-110240180:- NPHP1 5'UTR 777929ef26 CA113863 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR deca537b81 CA113864 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR 3cd31d366b CA113865 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR 2838ad0352 CA113866 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR 81d8023f8c CA113867 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR 72d5602a18 CA113868 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR b329fdd089 CA113869 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR 1f8941ef48 CA113870 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR d9eacef596 CA113871 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR d29e12c80e CA113872 NM_000272 chr2:110238658-110319928:- NPHP1 5'UTR 77fa53ff2d CA113873 NM_000272 chr2:110274832-110319928:-

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence NPHP1; NPH1 ATTTA 75-2276 2436-2440;2495-2499;2506-2510;2581-2585;2676-2680;2682-2686;2701-2705;2785-2789;3339-3343;3415-3419 NPHP1; NPH1 TTATTTATT 32-397 490-498 NPHP1; NPH1 WTATTTATW 32-397 490-498 NPHP1; NPH1 WWATTTAWW 75-2276 2434-2442;2493-2501;2674-2682 NPHP1; NPH1 WWWATTTAWWW 75-2276 2433-2443;2673-2683 NPHP1; NPH1 WWWWATTTAWWWW 75-2276 2432-2444;2672-2684

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0056019 chr2 110919179 110920712 - hsa_circ_0056018 chr2 110919179 110920709 -

DNA & RNA Element - circRNADb circRNA ID Chrom Start End Strand Samples hsa_circ_00098 chr2 110901118 110919274 - H9 hESCs,normal brain tissue hsa_circ_21986 chr2 110919179 110920709 - normal brain tissue,glioblastoma,oligodendroma

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-NPHP1-overlap.4 NM_207181Tchr2:110958997-110960056 expressed NPHP1 4867 protein-coding - hsa_circ_0117013 hsa-circ-NPHP1.11 NM_207181Tchr2:110935999-110959071 none NPHP1 4867 protein-coding - not_available hsa-circ-NPHP1.12 NM_001128179Tchr2:110919179-110920709 none NPHP1 4867 protein-coding - hsa_circ_0056018 hsa-circ-NPHP1.13 NM_001128179Tchr2:110901118-110919274 none NPHP1 4867 protein-coding - hsa_circ_0117010 hsa-circ-NPHP1.18 NM_001128179Tchr2:110901118-110920709 expressed NPHP1 4867 protein-coding - not_available hsa-circ-NPHP1.19 NM_000272Tchr2:110901118-110920709 expressed NPHP1 4867 protein-coding - not_available hsa-circ-NPHP1.22 NM_001128179Tchr2:110917703-110920712 expressed NPHP1 4867 protein-coding - hsa_circ_0117012 hsa-circ-NPHP1.23 NM_000272Tchr2:110917703-110920712 expressed NPHP1 4867 protein-coding - hsa_circ_0117012 hsa-circ-NPHP1.26 NM_001128179Tchr2:110901118-110907833 expressed NPHP1 4867 protein-coding x chr2:110901118-110907833_PA1_RNaseR hsa-circ-NPHP1.28 NM_207181Tchr2:110904329-110907833 expressed NPHP1 4867 protein-coding - hsa_circ_0117011 hsa-circ-NPHP1.7 NM_001128178Tchr2:110919180-110920712 none NPHP1 4867 protein-coding not_available not_available

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT670603 hsa-miR-640 Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670604 hsa-miR-378a-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670605 hsa-miR-6778-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670606 hsa-miR-6821-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670607 hsa-miR-6790-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670608 hsa-miR-3653-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670609 hsa-miR-150-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670610 hsa-miR-372-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670611 hsa-miR-371a-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670612 hsa-miR-616-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670613 hsa-miR-373-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670614 hsa-miR-371b-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670615 hsa-miR-7107-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670616 hsa-miR-1234-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670617 hsa-miR-1224-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670618 hsa-miR-3934-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670619 hsa-miR-764 Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT670620 hsa-miR-125a-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT679313 hsa-miR-6848-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT679314 hsa-miR-6843-3p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT679315 hsa-miR-6131 Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327 MIRT679316 hsa-miR-3663-5p Homo sapiens NPHP1 4867 Homo sapiens HITS-CLIP Functional MTI (Weak) 23824327

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004489 hsa-miR-16-1* 4867 NPHP1 agucgucGUGUCAAUUAUGACc :|:| ||||||| aaauuuuUAUAAGGAAUACUGu 2 16 188 209 [hg19:2:110881159-110881180:-] 0.5526 143 7 -7.85 -1.0749 MIMAT0004496 hsa-miR-23a* 4867 NPHP1 uuuaggguagggguCCUUGGgg |||||| gugaauaaaaugauGGAACCaa 3 9 59 80 [hg19:2:110881288-110881309:-] 0.4780 120 0 -9.49 -0.1470 MIMAT0004502 hsa-miR-28-3p 4867 NPHP1 agguccuCGAGUGUUAGAUCAc | | | ::|||||| ucuaacuGAUAAAGGUCUAGUa 2 16 370 391 [hg19:2:110880977-110880998:-] 0.5286 131 6 -9.82 -0.1427 MIMAT0004505 hsa-miR-32* 4867 NPHP1 uuUAUAGU-GUGUGUGAUUUAAc || |:: || | |||||||| agAUUUUGUCAAAAACUAAAUUu 2 21 286 308 [hg19:2:110881060-110881082:-] 0.5626 159 7 -9.62 -1.2318 MIMAT0004505 hsa-miR-32* 4867 NPHP1 uuUAUAGUGUGUGU-GAUUUAAc ||| ::: :|:| ||||||| gaAUACUGU-UAUAUCUAAAUUu 2 21 201 222 [hg19:2:110881146-110881167:-] 0.5526 149 7 -7.95 -1.2260 MIMAT0004505 hsa-miR-32* 4867 NPHP1 uuUAUAGUGUGUGU-GAUUUAAc :|||| | |:| :|||||| uaGUAUCCAAAAUAUUUAAAUUu 2 21 387 409 [hg19:2:110880959-110880981:-] 0.5069 143 6 -8.78 -0.1613 MIMAT0004505 hsa-miR-32* 4867 NPHP1 uuuauaguGUGUGUGAUUUAAc ||:| | |||||| uuuaaaacCAUAAAAUAAAUUu 2 15 172 193 [hg19:2:110881175-110881196:-] 0.5526 126 6 -6.01 -0.3417 MIMAT0004514 hsa-miR-29b-1* 4867 NPHP1 agAUUUGGUGGUAUACUUUGGUcg |||| :|:: | | |||||| uuUAAA-UAUUUUUUAAAACCAua 3 23 161 183 [hg19:2:110881185-110881207:-] 0.5526 140 0 -6.88 -0.5943 MIMAT0004515 hsa-miR-29b-2* 4867 NPHP1 gauucggugguacacUUUGGUc |||||| uuuaaauauuuuuuaAAACCAu 2 8 161 182 [hg19:2:110881186-110881207:-] 0.5526 120 6 -5.47 -0.4325 MIMAT0004518 hsa-miR-16-2* 4867 NPHP1 auuUCGUCGUGUCAUUAUAAcc ||:| | || |||||| ucuAGUAUC-CA-AAAUAUUua 3 20 385 404 [hg19:2:110880964-110880983:-] 0.5069 127 0 -4.45 -0.1740 MIMAT0004518 hsa-miR-16-2* 4867 NPHP1 auuucgucgugucaUUAUAAcc |||||| uauacaauaauuuaAAUAUUuu 3 9 151 172 [hg19:2:110881196-110881217:-] 0.5526 120 0 -2.83 -0.2754 MIMAT0004560 hsa-miR-183* 4867 NPHP1 aaUACCGGGAAGCCAUUAAGUg ||| :: | | |||||:| aaAUGUUUAUACAAUAAUUUAa 2 21 144 165 [hg19:2:110881203-110881224:-] 0.5526 136 0 -5.18 -0.2541 MIMAT0004565 hsa-miR-218-1* 4867 NPHP1 gguaccacgaACUGCCUUGGUa |||:||||||| gugaauaaaaUGAUGGAACCAa 2 13 59 80 [hg19:2:110881288-110881309:-] 0.4780 156 7 -18.72 -1.2133 MIMAT0004566 hsa-miR-218-2* 4867 NPHP1 gcgccACGAACUGUCUUGGUAc | :|| :| |||||| uuaaaUAUUUUUUAAAACCAUa 2 18 162 183 [hg19:2:110881185-110881206:-] 0.5526 121 6 -6.28 -0.6560 MIMAT0004586 hsa-miR-15b* 4867 NPHP1 aucucgUCGUUU-AUUACUAAgc | :||| | |||||| ucaaaaACUAAAUUUAUGAUUau 3 17 294 316 [hg19:2:110881052-110881074:-] 0.5626 131 0 -5.75 -0.1201 MIMAT0004587 hsa-miR-23b* 4867 NPHP1 uuUAGUCGUACGGUCCUUGGgu | :| ||| : |||||| ugAAUAAAAUGAU-GGAACCaa 3 21 60 80 [hg19:2:110881288-110881308:-] 0.4780 126 0 -13.98 -0.1337 MIMAT0004601 hsa-miR-145* 4867 NPHP1 ucuUGUCAUAAAGGUCCUUAgg | | | || : |||||| aauAAAUUUUUAUAAGGAAUac 3 20 185 206 [hg19:2:110881162-110881183:-] 0.5526 131 0 -7.44 -0.1880 MIMAT0004601 hsa-miR-145* 4867 NPHP1 ucuuGUCAUAAAGGU-CCUUAGg ||| || ||| |||||| cccuCAG-CUUCCCACGGAAUCa 2 19 17 38 [hg19:2:110881330-110881351:-] 0.4555 124 6 -15.49 -0.3602 MIMAT0000444 hsa-miR-126* 4867 NPHP1 gcgcAUGGUUUUCAUUAUUac ||: |: : |||||| aauuUAUGAGUGUUAAUAAaa 3 18 405 425 [hg19:2:110880943-110880963:-] 0.5344 129 0 -5.35 -0.2253 MIMAT0000444 hsa-miR-126* 4867 NPHP1 gcgcaugguuuucaUUAUUAc |||||| agaaauguuuauacAAUAAUu 2 8 142 162 [hg19:2:110881206-110881226:-] 0.5526 120 6 -1.58 -0.4245 MIMAT0000453 hsa-miR-154* 4867 NPHP1 uuAUCCAGUUGGCACAUA-CUAa || ||:|| :| |||| ||| cuUAAGUUAA-UG-GUAUAGAUu 2 21 253 273 [hg19:2:110881095-110881115:-] 0.5197 120 0 -9.95 -0.7598 MIMAT0000453 hsa-miR-154* 4867 NPHP1 uuauccaguuggcacAUACUAa |||||| gucaaaaacuaaauuUAUGAUu 2 8 293 314 [hg19:2:110881054-110881075:-] 0.5626 120 6 -7.46 -0.2244 MIMAT0004615 hsa-miR-195* 4867 NPHP1 ccucGUCGUGUCGGUUAUAAcc :||:|: |||||| ggucUAGUAUCCAAAAUAUUua 3 19 383 404 [hg19:2:110880964-110880985:-] 0.5069 126 0 -8.95 -0.1756 MIMAT0004615 hsa-miR-195* 4867 NPHP1 ccucGUCGUGUCGGUUAUAAcc || :| : |||||| uauaCAAUAAUUUAAAUAUUuu 3 19 151 172 [hg19:2:110881196-110881217:-] 0.5526 122 0 -3.68 -0.2802 MIMAT0000714 hsa-miR-302b* 4867 NPHP1 cuuucgugaagguacAAUUUCa |||||| cuacagaccauauuuUUAAAGa 2 8 123 144 [hg19:2:110881224-110881245:-] 0.5526 120 6 -7.42 -0.3271 MIMAT0000716 hsa-miR-302c* 4867 NPHP1 gucguccaugggggUACAAUUu :|||||| auuuaaauuuaugaGUGUUAAu 2 9 400 421 [hg19:2:110880947-110880968:-] 0.5344 124 6 -5.28 -0.2561 MIMAT0004685 hsa-miR-302d* 4867 NPHP1 cguucacggagguacAAUUUCa |||||| cuacagaccauauuuUUAAAGa 2 8 123 144 [hg19:2:110881224-110881245:-] 0.5526 120 6 -7.90 -0.3271 MIMAT0004688 hsa-miR-374a* 4867 NPHP1 uuAAUGUUAUGU---UAGACUAUUc ||:||| || | ||||||| auUUGCAAAUCAUCUAACUGAUAAa 2 21 358 382 [hg19:2:110880986-110881010:-] 0.5714 155 7 -9.57 -1.2656 MIMAT0004689 hsa-miR-377* 4867 NPHP1 cuuaaguggUUCCCGUUGGAga || |||||| gaaagugaaAAAAACAACCUac 3 14 321 342 [hg19:2:110881026-110881047:-] 0.5714 121 0 -8.68 -0.1246 MIMAT0004698 hsa-miR-135b* 4867 NPHP1 ggguaccgaaaaucgGGAUGUa |||||| aagugaaaaaaacaaCCUACAg 2 8 323 344 [hg19:2:110881024-110881045:-] 0.5714 120 6 -8.59 -0.1374 MIMAT0004700 hsa-miR-331-5p 4867 NPHP1 ccuagggacccUGGUAUGGAUc :::|||:||| uaaggaauacuGUUAUAUCUAa 2 12 197 218 [hg19:2:110881150-110881171:-] 0.5526 127 0 -13.66 -0.1368 MIMAT0004703 hsa-miR-335* 4867 NPHP1 ccAGUCCUCGUUAUUACUUUUu ||| || || |:|||||| auUCA--AG-AA-AGUGAAAAa 2 21 315 332 [hg19:2:110881036-110881053:-] 0.5884 133 6 -9.03 -0.3039 MIMAT0004752 hsa-miR-20b* 4867 NPHP1 gaccuucacggguauGAUGUCa |||||| uuuacucuuuucuuuCUACAGa 2 8 108 129 [hg19:2:110881239-110881260:-] 0.5526 120 6 -11.62 -0.1896 MIMAT0004752 hsa-miR-20b* 4867 NPHP1 gaccuucacggguauGAUGUCa |||||| agugaaaaaaacaacCUACAGa 2 8 324 345 [hg19:2:110881023-110881044:-] 0.5714 120 6 -11.49 -0.2515 MIMAT0001635 hsa-miR-452 4867 NPHP1 agucaaaggagACGUUUGUCAa | :||||||| uuauaucuaaaUUUAAACAGUa 2 12 209 230 [hg19:2:110881138-110881159:-] 0.5526 143 7 -9.65 -1.3038 MIMAT0001635 hsa-miR-452 4867 NPHP1 agucAAAGGAGACGUUUGUCaa |||::|| |||||| uuuaUUUUUUC-AAAAACAGcu 3 19 231 251 [hg19:2:110881117-110881137:-] 0.4986 132 0 -10.87 -0.1256 MIMAT0002178 hsa-miR-487a 4867 NPHP1 uugaccuacagggacAUACUAa |||||| gucaaaaacuaaauuUAUGAUu 2 8 293 314 [hg19:2:110881054-110881075:-] 0.5626 120 6 -7.27 -0.2285 MIMAT0002835 hsa-miR-526b 4867 NPHP1 ugucUUUCACGA--AGGGAGUUCUc ||| | | |: :|||||| aacuAAAUUUAUGAUUAUUCAAGAa 2 20 299 323 [hg19:2:110881045-110881069:-] 0.5884 130 6 -8.21 -0.3396 MIMAT0005457 hsa-miR-518a-5p 4867 NPHP1 cuuucccgaagggAAACGUc |||||| augggaaaacauaUUUGCAa 2 8 346 365 [hg19:2:110881003-110881022:-] 0.5714 120 6 -10.84 -0.2074 MIMAT0002862 hsa-miR-527 4867 NPHP1 cuuucccgaagggAAACGUc |||||| augggaaaacauaUUUGCAa 2 8 346 365 [hg19:2:110881003-110881022:-] 0.5714 120 6 -10.84 -0.2074 MIMAT0004777 hsa-miR-513a-3p 4867 NPHP1 ggAAGAGUCUUUCCACUUUAAAu || ||| ||| |||||| uuUUGUCAAAAA--CUAAAUUUa 2 22 289 309 [hg19:2:110881059-110881079:-] 0.5626 126 6 -6.92 -0.2064 MIMAT0004777 hsa-miR-513a-3p 4867 NPHP1 ggaAGAGUCUUUCCACUUUAAAu || || || | |||||| guaUC-CAAAAUAUUUAAAUUUa 2 21 389 410 [hg19:2:110880958-110880979:-] 0.5069 122 6 -6.92 -0.2909 MIMAT0004777 hsa-miR-513a-3p 4867 NPHP1 ggaagagucuuuccacUUUAAAu |||||| uuuaaaaccauaaaauAAAUUUu 2 8 172 194 [hg19:2:110881174-110881196:-] 0.5526 120 6 -5.41 -0.3706 MIMAT0004777 hsa-miR-513a-3p 4867 NPHP1 ggaagagucuuuccacUUUAAAu |||||| gaauacuguuauaucuAAAUUUa 2 8 201 223 [hg19:2:110881145-110881167:-] 0.5526 120 6 -6.92 -0.2081 MIMAT0004777 hsa-miR-513a-3p 4867 NPHP1 ggaagagucuuuccacUUUAAAu |||||| uuuaugaguguuaauaAAAUUUa 2 8 407 429 [hg19:2:110880939-110880961:-] 0.5344 120 6 -7.18 -0.2070 MIMAT0002879 hsa-miR-507 4867 NPHP1 aagugagguuuuccACGUUUu |||||| ugggaaaacauauuUGCAAAu 2 8 347 367 [hg19:2:110881001-110881021:-] 0.5714 120 6 -5.60 -0.1155 MIMAT0002880 hsa-miR-508-3p 4867 NPHP1 agAUGAGGUUUUC----CG---AUGUUAgu ||:|:: |||| |: |||||| caUAUUUUUAAAGAAAUGUUUAUACAAUaa 3 22 131 160 [hg19:2:110881208-110881237:-] 0.5526 123 0 -7.39 -0.4668 MIMAT0002883 hsa-miR-514 4867 NPHP1 agaugagugucuucACAGUUa |||||| uaaaagcaagauuuUGUCAAa 2 8 278 298 [hg19:2:110881070-110881090:-] 0.5626 120 6 -8.56 -0.3820 MIMAT0003221 hsa-miR-557 4867 NPHP1 ucuguuccgggugggcACGUUUg |||||| aaugggaaaacauauuUGCAAAu 2 8 345 367 [hg19:2:110881001-110881023:-] 0.5714 120 6 -11.78 -0.1167 MIMAT0003226 hsa-miR-562 4867 NPHP1 cguuuaccaUGUCGAUGAAa |||||||||| uuuucaaaaACAGCUACUUa 2 12 237 256 [hg19:2:110881112-110881131:-] 0.4716 155 7 -15.56 -1.2416 MIMAT0003232 hsa-miR-568 4867 NPHP1 cacacaUAUGUAAAUAUGUa | |::|||||||| uuaaagAAAUGUUUAUACAa 2 15 138 157 [hg19:2:110881211-110881230:-] 0.5526 154 7 -7.07 -1.2747 MIMAT0003234 hsa-miR-569 4867 NPHP1 ugAAAGGUCCUAAGUA-AUUGa ||| || | |||| |||| uaUUUGCA--AAUCAUCUAACu 2 20 357 376 [hg19:2:110880992-110881011:-] 0.5714 120 0 -7.27 -0.9038 MIMAT0003242 hsa-miR-577 4867 NPHP1 gucCAUGGUUA--UAAAAUAGAu ||:::||| | ||||||| ugaGUGUUAAUAAAAUUUAUCUu 2 19 411 433 [hg19:2:110880935-110880957:-] 0.5344 157 7 -12.45 -1.1582 MIMAT0003242 hsa-miR-577 4867 NPHP1 guccaUGGUUAUAAAAU-AGAu ||: | :||||| ||| uuacaACUUAGGUUUUACUCUu 2 17 95 116 [hg19:2:110881252-110881273:-] 0.5265 120 0 -6.22 -1.1208 MIMAT0003243 hsa-miR-578 4867 NPHP1 uguuaggaucucguGUUCUUc |||||| aauuuaugauuauuCAAGAAa 2 8 304 324 [hg19:2:110881044-110881064:-] 0.5884 120 6 -5.84 -0.3222 MIMAT0003249 hsa-miR-584 4867 NPHP1 gagucaggguccgUUUGGUAUu |||||||| uaaauauuuuuuaAAACCAUAa 2 10 163 184 [hg19:2:110881184-110881205:-] 0.5526 145 7 -9.87 -1.3409 MIMAT0003249 hsa-miR-584 4867 NPHP1 gagucAGGGUCCGUUUGGUAUu |:|:| ||:|||||| uuucuUUCUA--CAGACCAUAu 2 18 116 135 [hg19:2:110881233-110881252:-] 0.5526 138 6 -14.28 -0.2043 MIMAT0003285 hsa-miR-548c-3p 4867 NPHP1 cguUUUCAUUAA--CUCUAAAAAc | | ||||| | |||||| uauACAAUAAUUUAAAUAUUUUUu 2 20 151 174 [hg19:2:110881194-110881217:-] 0.5526 126 6 -2.42 -0.3791 MIMAT0003285 hsa-miR-548c-3p 4867 NPHP1 cguUUUCAUUAAC---UCUAAAAAc ||: |||| | |||||| | cuuAAGUUAAUGGUAUAGAUUUCUa 2 20 253 277 [hg19:2:110881091-110881115:-] 0.5197 126 0 -5.17 -0.1111 MIMAT0003285 hsa-miR-548c-3p 4867 NPHP1 cgUUUU--CAUUAACUCUAAAAAc |||| ||| | |||||| uuAAAACCAUAAAAUAAAUUUUUa 2 21 173 196 [hg19:2:110881172-110881195:-] 0.5526 123 6 -1.84 -0.4388 MIMAT0003285 hsa-miR-548c-3p 4867 NPHP1 cgUUUUCAUUAACUCUAAAAAc || ||| ||| |||||| uaAACAGU-AUU--UAUUUUUu 2 21 222 240 [hg19:2:110881128-110881146:-] 0.4881 123 6 -3.50 -0.1039 MIMAT0003285 hsa-miR-548c-3p 4867 NPHP1 cguuuucauuaacucUAAAAAc |||||| cuuucuacagaccauAUUUUUa 2 8 119 140 [hg19:2:110881228-110881249:-] 0.5526 120 6 -1.45 -0.2653 MIMAT0003299 hsa-miR-630 4867 NPHP1 uggaaGGGACCAUGUCUUAUGa :::| || :|||||| auaaaUUUUUAUAAGGAAUACu 2 18 186 207 [hg19:2:110881161-110881182:-] 0.5526 133 6 -9.60 -0.2753 MIMAT0003313 hsa-miR-643 4867 NPHP1 gauggacucgaucGUAUGUUca :|||||| uuaaagaaauguuUAUACAAua 3 10 138 159 [hg19:2:110881209-110881230:-] 0.5526 121 0 -5.28 -0.4027 MIMAT0003337 hsa-miR-659 4867 NPHP1 accccugggagggaCUUGGUUc ||||||| ugaauaaaaugaugGAACCAAa 2 9 60 81 [hg19:2:110881287-110881308:-] 0.4780 140 7 -12.85 -0.9920 MIMAT0003338 hsa-miR-660 4867 NPHP1 guugaggcuAUACGUUACCCau || |||||| aaaacaaccUACAGAAUGGGaa 3 14 331 352 [hg19:2:110881016-110881037:-] 0.5714 121 0 -11.16 -0.1237 MIMAT0003886 hsa-miR-769-5p 4867 NPHP1 ucgagucUUGG--GUCUCCAGAgu |||: :| |||||| aucaucuAACUGAUAAAGGUCUag 3 16 366 389 [hg19:2:110880979-110881002:-] 0.5286 126 0 -11.07 -0.1255 MIMAT0004909 hsa-miR-450b-5p 4867 NPHP1 auaaguccUUGUAU-AACGUUUu |||||| ||||||| aaugggaaAACAUAUUUGCAAAu 2 15 345 367 [hg19:2:110881001-110881023:-] 0.5714 161 7 -14.20 -1.1562 MIMAT0004909 hsa-miR-450b-5p 4867 NPHP1 auaagUCCUUGUAUAAC-GUUUu || || || ||| |||| auaaaAGCAAGAUUUUGUCAAAa 2 18 277 299 [hg19:2:110881069-110881091:-] 0.5626 125 0 -6.45 -1.2801 MIMAT0004950 hsa-miR-877* 4867 NPHP1 gacccuccucccuCUUCUCCu ||||||| uaucuuguucaauGAAGAGGa 2 9 428 448 [hg19:2:110880920-110880940:-] 0.5107 140 7 -12.53 -1.2249 MIMAT0004978 hsa-miR-935 4867 NPHP1 cgccaucgccuucgccAUUGACc |||||| auauuugcaaaucaucUAACUGa 2 8 356 378 [hg19:2:110880990-110881012:-] 0.5714 120 6 -4.60 -0.2670 MIMAT0004987 hsa-miR-944 4867 NPHP1 gaguaggcuACAUGUUAUUAAa | |||||||||| agaaauguuUAUACAAUAAUUu 2 14 142 163 [hg19:2:110881205-110881226:-] 0.5526 157 7 -9.97 -1.1664 MIMAT0005828 hsa-miR-1183 4867 NPHP1 acGGGUGAGAGUGGUAGUGGAUGUCac :::|||||: :| | :|||||| guUUUACUCUUUUCUU--UCUACAGac 3 26 106 130 [hg19:2:110881238-110881262:-] 0.5526 142 0 -20.93 -0.1624 MIMAT0005572 hsa-miR-1225-5p 4867 NPHP1 ggggggugaCCCGG-CAUGGGUg || |: |||:||| acugauaaaGGUCUAGUAUCCAa 2 14 374 396 [hg19:2:110880972-110880994:-] 0.5286 128 0 -15.83 -0.1491 MIMAT0005576 hsa-miR-1226* 4867 NPHP1 gggguagGUCCGGACGUACGGGAGUg || |||| :| ||||||| -caguggCA-GCCUCUA-GCCCUCAg 2 20 1 23 [hg19:2:110881345-110881367:-] 0.3648 155 7 -22.34 -0.2288 MIMAT0005873 hsa-miR-1208 4867 NPHP1 aggcggacAGACUUGUCAcu |:| |||||| uaucuaaaUUUAAACAGUau 3 13 212 231 [hg19:2:110881137-110881156:-] 0.5526 128 0 -6.60 -0.2117 MIMAT0005882 hsa-miR-548k 4867 NPHP1 ucGUUUUAGGCGUUCA-UGAAAa ||||| :| | || ||||| acCAAAAAUCAC-UGUCACUUUa 2 21 76 97 [hg19:2:110881271-110881292:-] 0.5004 122 0 -7.72 -0.8844 MIMAT0005891 hsa-miR-1303 4867 NPHP1 ucUCGUUCUGG-GGCAGAGAUUu || || ||: :: | ||||| uaAGGAAUACUGUUAUAUCUAAa 2 21 197 219 [hg19:2:110881149-110881171:-] 0.5526 123 0 -13.08 -0.1076 MIMAT0005900 hsa-miR-1248 4867 NPHP1 aaAUCGUGUC-ACGAAUAUGUUC-UUCca |:|:|:|| | : |||| ||| ||| aaUGGUAUAGAUUUCUAUAAAAGCAAGau 3 26 261 289 [hg19:2:110881079-110881107:-] 0.5197 120 0 -11.81 -0.1475 MIMAT0005913 hsa-miR-1261 4867 NPHP1 uucgguuucggaAUAGGUa |||||| auaaaggucuagUAUCCAa 2 8 378 396 [hg19:2:110880972-110880990:-] 0.5286 120 6 -12.76 -0.4660 MIMAT0005916 hsa-miR-548n 4867 NPHP1 ugUUUUAGGUGUUAAUGAAAAc | |||::| || ||:|||| caAUAAUUUA-AA-UAUUUUUu 2 21 155 174 [hg19:2:110881194-110881213:-] 0.5526 140 0 -4.44 -0.1105 MIMAT0005941 hsa-miR-1284 4867 NPHP1 cuuuucggucccagaCAUAUCu |||||| cuacuuaaguuaaugGUAUAGa 2 8 250 271 [hg19:2:110881097-110881118:-] 0.5197 120 6 -10.99 -0.3290 MIMAT0009977 hsa-miR-2052 4867 NPHP1 ugUAAUGACAAUAGUUUUGu | ||:| || |:||||| uaAAUAUU-UU-UUAAAACc 2 19 163 180 [hg19:2:110881188-110881205:-] 0.5526 134 0 -3.43 -0.1357 MIMAT0009977 hsa-miR-2052 4867 NPHP1 uguaaugACAAUAGUUUUgu | ||:|||||| agcaagaUUUUGUCAAAAac 3 14 282 301 [hg19:2:110881067-110881086:-] 0.5626 133 0 -9.84 -0.1825 MIMAT0011161 hsa-miR-2116* 4867 NPHP1 cccucaagaacCGUACCCUcc | |||||| aacaaccuacaGAAUGGGAaa 3 11 333 353 [hg19:2:110881015-110881035:-] 0.5714 122 0 -7.84 -0.1142 MIMAT0014977 hsa-miR-3115 4867 NPHP1 ugGUUGAUCAUUUGGGUAUa :| :| |||| ||||| aaUAUUUUUUAAAACCAUAa 2 19 165 184 [hg19:2:110881184-110881203:-] 0.5526 126 0 -5.85 -0.2180 MIMAT0014981 hsa-miR-3119 4867 NPHP1 cgguaguuucaAUUUUCGgu ||||||| auagauuucuaUAAAAGCaa 3 10 267 286 [hg19:2:110881082-110881101:-] 0.5197 125 0 -6.18 -0.1906 MIMAT0015005 hsa-miR-3137 4867 NPHP1 ugGGGUAACGAGGGUCCGAUGUCu :::| | :|::| |||||| guUUUACUCUUUUCUUUCUACAGa 2 23 106 129 [hg19:2:110881239-110881262:-] 0.5526 122 6 -16.81 -0.1878 MIMAT0015005 hsa-miR-3137 4867 NPHP1 ugggguaacgaggguccGAUGUCu |||||| aaagugaaaaaaacaacCUACAGa 2 8 322 345 [hg19:2:110881023-110881046:-] 0.5714 120 6 -11.40 -0.2538 MIMAT0015008 hsa-miR-3140 4867 NPHP1 ugauggaCUUAAGG-GUUUUCGa || |||: :|||||| ugguauaGAUUUCUAUAAAAGCa 2 16 263 285 [hg19:2:110881083-110881105:-] 0.5197 138 6 -9.14 -0.2211 MIMAT0015012 hsa-miR-3143 4867 NPHP1 gcUUUCUUCGCGAAAU---GUUACAAua |:| | :|||| |||||| acAGACCAUAUUUUUAAAGAAAUGUUua 3 24 125 152 [hg19:2:110881216-110881243:-] 0.5526 122 0 -7.23 -0.3575 MIMAT0015015 hsa-miR-3144-3p 4867 NPHP1 auuucucuggcuuguCCAUAUa |||||| gcuacuuaaguuaauGGUAUAg 2 8 249 270 [hg19:2:110881098-110881119:-] 0.5197 120 6 -6.83 -0.1735 MIMAT0015016 hsa-miR-3145 4867 NPHP1 guuaaGGUUUGUGAGUUUUAUAGa :| |::|: ||||||||: aaaggUCUAGUAUCCAAAAUAUUu 2 20 380 403 [hg19:2:110880965-110880988:-] 0.5284 147 0 -12.85 -0.1057 MIMAT0015016 hsa-miR-3145 4867 NPHP1 guuAAGGU-UUGUGAGUUUUAUAGa || :| ||:| |: ||||||: uguUUAUACAAUAAUUUAAAUAUUu 2 22 147 171 [hg19:2:110881197-110881221:-] 0.5526 144 0 -7.69 -0.2766 MIMAT0015021 hsa-miR-3148 4867 NPHP1 uucGUGUGUGGUCA--AAAAAGGu :| ||| :| | |||||:| auuUAAACAGUAUUUAUUUUUUCa 2 20 219 242 [hg19:2:110881126-110881149:-] 0.4881 134 0 -8.97 -0.1162 MIMAT0015022 hsa-miR-3149 4867 NPHP1 uauGUGUGUGUAUAGGUAUGUUu :| | | ||:|::|||||| uuuUAAAGAAAUGUUUAUACAAu 2 21 136 158 [hg19:2:110881210-110881232:-] 0.5526 148 6 -10.71 -0.2250 MIMAT0015027 hsa-miR-3074 4867 NPHP1 gccacggauGACUCGACUAUag || | |||||| gcaaaucauCU-AACUGAUAaa 3 14 362 382 [hg19:2:110880986-110881006:-] 0.5714 123 0 -7.76 -0.1300 MIMAT0015037 hsa-miR-3163 4867 NPHP1 cagaaugacgggaguAAAAUAu |||||| aaccauaaaauaaauUUUUAUa 2 8 177 198 [hg19:2:110881170-110881191:-] 0.5526 120 6 -3.25 -0.3443 MIMAT0001630 hsa-miR-323b-5p 4867 NPHP1 acgcuugaguggugccUGUUGGa |||||| caagaaagugaaaaaaACAACCu 2 8 318 340 [hg19:2:110881028-110881050:-] 0.5884 120 6 -12.54 -0.1052 MIMAT0015073 hsa-miR-3190-5p 4867 NPHP1 agAGACCGGCAGAUGGAA-GGUGu ||| ||| || | ||| |||| ccUCUAGCCCUC-AGCUUCCCACg 2 22 10 32 [hg19:2:110881336-110881358:-] 0.3648 131 0 -23.07 -0.2387 MIMAT0015088 hsa-miR-514b-3p 4867 NPHP1 aggugagugucuccACAGUUa |||||| uaaaagcaagauuuUGUCAAa 2 8 278 298 [hg19:2:110881070-110881090:-] 0.5626 120 6 -7.89 -0.3820 MIMAT0016857 hsa-miR-4305 4867 NPHP1 cuugaccuccaCAGAUCc |||||| aacugauaaagGUCUAGu 2 8 373 390 [hg19:2:110880978-110880995:-] 0.5286 120 6 -11.97 -0.1232 MIMAT0016860 hsa-miR-4307 4867 NPHP1 ccuUUGUCCUUUUUUGUAa |: | |::||||||| uacAGAAUGGGAAAACAUa 2 17 340 358 [hg19:2:110881010-110881028:-] 0.5714 152 7 -11.62 -0.8452 MIMAT0016860 hsa-miR-4307 4867 NPHP1 ccuuuguccuUUUUUGUaa ||||||| uuauuuuuucAAAAACAgc 3 10 232 250 [hg19:2:110881118-110881136:-] 0.4986 125 0 -3.71 -0.1447 MIMAT0016866 hsa-miR-4315 4867 NPHP1 caggucGAG-UCUUUCGCc :|| ||||||:| ugauuaUUCAAGAAAGUGa 2 13 310 328 [hg19:2:110881040-110881058:-] 0.5884 131 0 -11.74 -0.1688 MIMAT0016871 hsa-miR-4320 4867 NPHP1 uccUUCGAUGUCUUAGGg ||| | :|| |||| auaAAGGUCUAGUAUCCa 2 16 378 395 [hg19:2:110880973-110880990:-] 0.5286 123 0 -9.95 -0.1155 MIMAT0016886 hsa-miR-4252 4867 NPHP1 accacgacugaGUCACCGg ||||||| -----------CAGUGGCa 2 9 1 8 [hg19:2:110881360-110881367:-] 0.2741 140 7 -12.28 -0.1564 MIMAT0016888 hsa-miR-4326 4867 NPHP1 cagacccuCUGUCUCCUUgu || ||||||| uguucaauGA-AGAGGAAgu 3 13 433 451 [hg19:2:110880917-110880935:-] 0.5107 126 0 -10.51 -0.1304 MIMAT0016912 hsa-miR-4282 4867 NPHP1 aggaccuacGUUUAAAAu :||||||| accauaaaaUAAAUUUUu 2 10 178 195 [hg19:2:110881173-110881190:-] 0.5526 141 7 -5.63 -1.2895 MIMAT0016912 hsa-miR-4282 4867 NPHP1 aggaccUACGUUUAAAau || :|||||| uguuauAUCUAAAUUUaa 3 13 207 224 [hg19:2:110881144-110881161:-] 0.5526 128 0 -1.09 -0.1957 MIMAT0016912 hsa-miR-4282 4867 NPHP1 aggaccuacGUUUAAAau :|||||| gucaaaaacUAAAUUUau 3 10 293 310 [hg19:2:110881058-110881075:-] 0.5626 121 0 -1.12 -0.1116 MIMAT0016912 hsa-miR-4282 4867 NPHP1 aggaccuacgUUUAAAau |||||| aguguuaauaAAAUUUau 3 9 413 430 [hg19:2:110880938-110880955:-] 0.5344 120 0 -0.85 -0.1042 MIMAT0016926 hsa-miR-4328 4867 NPHP1 uuAGGAC-CCUUUUGAcc |::|| |||||| gaUUUUGUCAAAAACUaa 3 16 287 304 [hg19:2:110881064-110881081:-] 0.5626 122 0 -6.50 -0.3162 MIMAT0000073 hsa-miR-19a 4867 NPHP1 agucaaaacgUAUCUAAACGUgu | | ||||||| gaaugggaaaACAUAUUUGCAaa 3 14 344 366 [hg19:2:110881002-110881024:-] 0.5714 129 0 -8.12 -0.1764 MIMAT0000074 hsa-miR-19b 4867 NPHP1 agucaaaacGUACCUAAACGUgu ||| ||||||| augggaaaaCAU--AUUUGCAaa 3 15 346 366 [hg19:2:110881002-110881022:-] 0.5714 127 0 -8.23 -0.1764 MIMAT0000087 hsa-miR-30a 4867 NPHP1 gaaggucagcuccUACAAAUGu |||||||: uauuuuuaaagaaAUGUUUAUa 2 10 133 154 [hg19:2:110881214-110881235:-] 0.5526 129 0 -10.98 -0.3531 MIMAT0000099 hsa-miR-101 4867 NPHP1 aagucAAUAGU-GUCAUGACAu |||| | | |||||| aauuuUUAUAAGGAAUACUGUu 2 17 189 210 [hg19:2:110881158-110881179:-] 0.5526 123 6 -6.74 -0.2101 MIMAT0000242 hsa-miR-129-5p 4867 NPHP1 cguucgggucuggcGUUUUUc |||||| aguauuuauuuuuuCAAAAAc 2 8 227 247 [hg19:2:110881121-110881141:-] 0.4881 120 6 -2.09 -0.1261 MIMAT0000242 hsa-miR-129-5p 4867 NPHP1 cguucgggucuggcGUUUUUc |||||| aagcaagauuuuguCAAAAAc 2 8 281 301 [hg19:2:110881067-110881087:-] 0.5626 120 6 -10.31 -0.2259 MIMAT0000244 hsa-miR-30c 4867 NPHP1 cgacucucacauccUACAAAUGu |||||||: auauuuuuaaagaaAUGUUUAUa 2 10 132 154 [hg19:2:110881214-110881236:-] 0.5526 129 0 -7.81 -0.3502 MIMAT0000245 hsa-miR-30d 4867 NPHP1 gaaggucagccccUACAAAUGu |||||||: uauuuuuaaagaaAUGUUUAUa 2 10 133 154 [hg19:2:110881214-110881235:-] 0.5526 129 0 -9.07 -0.3559 MIMAT0000259 hsa-miR-182 4867 NPHP1 ucacacucaagaugguAACGGUUu |||:||| cuauaaaagcaagauuUUGUCAAa 2 9 275 298 [hg19:2:110881070-110881093:-] 0.5626 124 0 -8.02 -0.1064 MIMAT0000269 hsa-miR-212 4867 NPHP1 ccggcacugaccucUGACAAu |||||| uuuuuauaaggaauACUGUUa 2 8 191 211 [hg19:2:110881157-110881177:-] 0.5526 120 6 -10.86 -0.4023 MIMAT0000280 hsa-miR-223 4867 NPHP1 accccauaaacuGUUUGACUGu | ||||||: uuugcaaaucauCUAACUGAUa 2 11 359 380 [hg19:2:110880988-110881009:-] 0.5714 126 0 -8.79 -0.1860 MIMAT0000318 hsa-miR-200b 4867 NPHP1 agUAG-UAAUGGUCCGUCAUAAu ||| | ::| ||||||| auAUCUAAAUUUAAACAGUAUUu 2 21 211 233 [hg19:2:110881135-110881157:-] 0.5526 143 7 -10.70 -1.2557 MIMAT0000420 hsa-miR-30b 4867 NPHP1 ucgacucacauccUACAAAUGu |||||||: uauuuuuaaagaaAUGUUUAUa 2 10 133 154 [hg19:2:110881214-110881235:-] 0.5526 129 0 -7.81 -0.3502 MIMAT0000424 hsa-miR-128 4867 NPHP1 uuucucuggccaAGUGACAcu ||||||| uggaaccaaaaaUCACUGUca 3 10 72 92 [hg19:2:110881276-110881296:-] 0.4780 125 0 -12.09 -0.1554 MIMAT0000426 hsa-miR-132 4867 NPHP1 gcugguaccgacaucUGACAAu |||||| auuuuuauaaggaauACUGUUa 2 8 190 211 [hg19:2:110881157-110881178:-] 0.5526 120 6 -9.21 -0.4054 MIMAT0000432 hsa-miR-141 4867 NPHP1 gguagaaauggucugUCACAAu |||||| auauuuaaauuuaugAGUGUUa 2 8 398 419 [hg19:2:110880949-110880970:-] 0.5344 120 6 -9.62 -0.4159 MIMAT0000435 hsa-miR-143 4867 NPHP1 cucgaugucacgaAGUAGAgu |||||| acauauuugcaaaUCAUCUaa 3 9 354 374 [hg19:2:110880994-110881014:-] 0.5714 120 0 -8.03 -0.1243 MIMAT0000436 hsa-miR-144 4867 NPHP1 ucAUGUAGUAGAUAUGACAu | :|| | ||||||| uuUUUAUAAGGAAUACUGUu 2 19 191 210 [hg19:2:110881158-110881177:-] 0.5526 146 7 -7.88 -1.2047 MIMAT0000456 hsa-miR-186 4867 NPHP1 ucggguuuuccucuUAAGAAAc |||:||| acaauaauuuaaauAUUUUUUa 2 9 154 175 [hg19:2:110881193-110881214:-] 0.5526 124 0 -2.81 -0.1871 MIMAT0000460 hsa-miR-194 4867 NPHP1 agGUGUACCUCAACGACAAUGu :|:| ||| | ||||||: uuUAUAAGGA-AUACUGUUAUa 2 21 193 213 [hg19:2:110881155-110881175:-] 0.5526 138 0 -14.34 -0.4046 MIMAT0000617 hsa-miR-200c 4867 NPHP1 agguaguaaugggccGUCAUAAu ||||||| auaucuaaauuuaaaCAGUAUUu 2 9 211 233 [hg19:2:110881135-110881157:-] 0.5526 140 7 -10.29 -1.2557 MIMAT0000682 hsa-miR-200a 4867 NPHP1 uguagcaauggucugUCACAAu |||||| auauuuaaauuuaugAGUGUUa 2 8 398 419 [hg19:2:110880949-110880970:-] 0.5344 120 6 -7.61 -0.4191 MIMAT0000692 hsa-miR-30e 4867 NPHP1 gaaggucAGUUC-CUACAAAUGu | ||| |||||||: auauuuuUAAAGAAAUGUUUAUa 2 16 132 154 [hg19:2:110881214-110881236:-] 0.5526 134 0 -10.17 -0.3474 MIMAT0000703 hsa-miR-361-5p 4867 NPHP1 cauggggaccucuaaGACUAUu |||||| uugcaaaucaucuaaCUGAUAa 2 8 360 381 [hg19:2:110880987-110881008:-] 0.5714 120 6 -9.58 -0.2381 MIMAT0000726 hsa-miR-373 4867 NPHP1 uguGGGGUUUUAGCUUCG-UGAAg :::||||| | ||| |||| uuuUUUCAAAAAC--AGCUACUUa 2 21 235 256 [hg19:2:110881112-110881133:-] 0.4986 121 0 -9.80 -1.2067 MIMAT0000737 hsa-miR-382 4867 NPHP1 gcUUA--GGUGGUG-CUUGUUGAAg ||| |:::||| ||||||| aaAAUCACUGUCACUUUACAACUUa 2 21 80 104 [hg19:2:110881264-110881288:-] 0.5004 150 7 -16.16 -1.1821 MIMAT0004692 hsa-miR-340 4867 NPHP1 uuagucagaguaacGAAAUAUu :|||||| accauaaaauaaauUUUUAUAa 2 9 178 199 [hg19:2:110881169-110881190:-] 0.5526 124 6 -3.70 -0.2886 MIMAT0004692 hsa-miR-340 4867 NPHP1 uuagucagaguaacgAAAUAUu |||||| auuuuuaaagaaaugUUUAUAc 2 8 134 155 [hg19:2:110881213-110881234:-] 0.5526 120 6 -1.46 -0.3837 MIMAT0001536 hsa-miR-429 4867 NPHP1 ugccaaaauGGUCUGUCAUAAu ::| |||||||| uaucuaaauUUAAACAGUAUUu 2 14 212 233 [hg19:2:110881135-110881156:-] 0.5526 149 7 -11.14 -1.2546 MIMAT0001625 hsa-miR-431 4867 NPHP1 acguacugccggaCGUUCUGu ||||||: gauuucuauaaaaGCAAGAUu 2 9 270 290 [hg19:2:110881078-110881098:-] 0.5197 124 0 -9.06 -0.1498 MIMAT0002171 hsa-miR-410 4867 NPHP1 uguccgguagacACAAUAUAa |||||||| uauaaggaauacUGUUAUAUc 2 10 195 215 [hg19:2:110881153-110881173:-] 0.5526 145 7 -10.54 -1.1936 MIMAT0002175 hsa-miR-485-5p 4867 NPHP1 cuuaaguaGUGCCGGUCGGAGa || | ||||||| --------CAGUGGCAGCCUCu 2 15 1 14 [hg19:2:110881354-110881367:-] 0.3648 146 7 -18.84 -0.1420 MIMAT0002816 hsa-miR-494 4867 NPHP1 cuccAAAGGGCAC-AUACAAAgu |||:: | |||||| cauaUUUUUAAAGAAAUGUUUau 3 19 131 153 [hg19:2:110881215-110881237:-] 0.5526 121 0 -3.79 -0.1773 MIMAT0002818 hsa-miR-496 4867 NPHP1 cucuAACCGGUACAUUAUGAgu || :| | |||||| aaauUUUUAUAAGGAAUACUgu 3 19 188 209 [hg19:2:110881159-110881180:-] 0.5526 126 0 -3.26 -0.1447 MIMAT0002825 hsa-miR-520e 4867 NPHP1 ggGAGUUUUUCCUUCG-UGAAa :||||||| ||| |||| uuUUCAAAAA--CAGCUACUUa 2 20 237 256 [hg19:2:110881112-110881131:-] 0.4716 124 0 -11.58 -1.1928 MIMAT0002846 hsa-miR-520c-3p 4867 NPHP1 ugGGAGAUUUUCCUUCG-UGAAa ::|:| ||| ||| |||| auUUUUUCAAAAACAGCUACUUa 2 21 234 256 [hg19:2:110881112-110881134:-] 0.4986 120 0 -7.53 -1.2197 MIMAT0004801 hsa-miR-590-3p 4867 NPHP1 ugaucgaAUAUGUAUUUUAAu |:| |||||||| uuaugagUGUUAAUAAAAUUu 2 15 408 428 [hg19:2:110880940-110880960:-] 0.5344 150 7 -5.62 -1.1459 MIMAT0004801 hsa-miR-590-3p 4867 NPHP1 ugaucGAAUAU--GUAUUUUAau :||| | |||||||| uauuuUUUAAAACCAUAAAAUaa 3 17 167 189 [hg19:2:110881179-110881201:-] 0.5526 135 0 -4.46 -0.3619 MIMAT0003389 hsa-miR-542-3p 4867 NPHP1 aaaGUCAAUAGUUAGACAGUGu || |||| ||||||| aacCAAAAAUCA--CUGUCACu 2 20 75 94 [hg19:2:110881274-110881293:-] 0.5004 148 7 -13.18 -1.1203 MIMAT0004954 hsa-miR-543 4867 NPHP1 uucuucacguggcGCUUACAAa :||:|||| auauuuaaauuuaUGAGUGUUa 2 10 398 419 [hg19:2:110880949-110880970:-] 0.5344 125 0 -8.12 -0.1413 MIMAT0004954 hsa-miR-543 4867 NPHP1 uucuucacguggcgcUUACAAa |||||| ccauauuuuuaaagaAAUGUUu 2 8 130 151 [hg19:2:110881217-110881238:-] 0.5526 120 6 -4.78 -0.2062

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G032235 NPHP1 Homo sapiens 4867

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End NPHP1; NPH1 1 79 100 26.113 - chr2 110881288 110881367 NPHP1; NPH1 80 202 88.454 26.113 - chr2 110881165 110881288 NPHP1; NPH1 203 223 68.46 26.113 - chr2 110881144 110881165 NPHP1; NPH1 224 442 56.435 26.113 - chr2 110880925 110881144 NPHP1; NPH1 443 1480 19.186 26.113 - chr2 110879887 110880925

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile NPHP1 hsa-miR-4307 beg:341 end:361 pic:3' CCTTTGTCCTTTTTTGTAA 5'& .||..|||||| |.||| &5' --GAATGGGAAAACATATT 3' NPHP1 hsa-miR-23b beg:491 end:511 pic:3' CCATTAGGGACCGTTACACTA 5'& |.|| |.|| |||||||| &5' --TGATACTTG--AATGTGAT 3' NPHP1 hsa-miR-23a beg:496 end:511 pic:3' CCTTTAGGGACCGTTACACTA 5'& |.|| |||||||| &5' -------CTTG--AATGTGAT 3' NPHP1 hsa-miR-562 beg:243 end:256 pic:3' CGTTTACCATGTCGATGAAA 5'& |||||||||| &5' ---------ACAGCTACTT- 3' NPHP1 hsa-miR-562 beg:870 end:888 pic:3' CGTTTACCATGTCGATGAAA 5'& .||.||| ||||||| &5' -TAAGTGGCACAGCTA---- 3' NPHP1 hsa-miR-4320 beg:1007 end:1019 pic:3' TCCTTCGATGTCTTAGGG 5'& .|||||||| &5' ---------TAGAATCCC 3' NPHP1 hsa-miR-645 beg:1422 end:1440 pic:3' AGTCGTCATGGTCGGATCT 5'& ||| |||||||||. &5' ---GCACT-CCAGCCTAGG 3' NPHP1 hsa-miR-519e beg:593 end:609 pic:3' TTGTGAGATTTTCCTCCGTGAA 5'& |||.| ||||||| &5' ---ACTTTC-----AGGCACT- 3' NPHP1 hsa-miR-3176 beg:1178 end:1197 pic:3' GGCCATCAGGGTCCGGTCA 5'& |||. |.||||||||| &5' --GGTGTTTCCAGGCCAG- 3' NPHP1 hsa-miR-107 beg:1034 end:1051 pic:3' ACTATCGGGACATGTTACGACGA 5'& ||||.|| ||||||| &5' TGATGGC--------ATGCTGC- 3' NPHP1 hsa-miR-103 beg:1036 end:1051 pic:3' AGTATCGGGACATGTTACGACGA 5'& ||.|| ||||||| &5' --ATGGC--------ATGCTGC- 3' NPHP1 bkv-miR-B1-5p beg:634 end:656 pic:3' TACGAGAAGGGTTCAGAGTCTA 5'& || ||| ... |||||||| &5' --GC-CTTGTTGCATCTCAGAT 3' NPHP1 bkv-miR-B1-5p beg:1142 end:1164 pic:3' TACGAGAA-GGGTTCAGAGTCTA 5'& ||. ||| ||||||||| &5' ---CTTGAGCCCCAGTCTCAGA- 3' NPHP1 hsa-miR-3140 beg:568 end:586 pic:3' TGATG-GACTTAAGGGTTTTCGA 5'& |.| ||| .||||||| &5' --TGCTCTG-----TCAAAAGC- 3' NPHP1 kshv-miR-K12-10a beg:1275 end:1293 pic:3' CGGTGAGCCCCCCTGTTGTGAT 5'& ||| || |||||||| &5' GCCT-------GGCCAACACTA 3' NPHP1 hsa-miR-485-5p beg:0 end:15 pic:3' CTTAAGTAGT-GCCGGTCGGAGA 5'& || .|| |||||||| &5' --------CAGTGG-CAGCCTCT 3' NPHP1 hsa-miR-550 beg:594 end:609 pic:3' CCCGAGAATGAGGGAGTCCGTGA 5'& |..||||||||| &5' -----------CTTTCAGGCACT 3' NPHP1 kshv-miR-K12-10astar beg:678 end:692 pic:3' TCACCACCATAGCGGGGTTCGG 5'& .|.|||||||| &5' -----------TGTCCCAAGCC 3' NPHP1 kshv-miR-K12-1 beg:1324 end:1343 pic:3' CGAATGTGGGTCAAA---GGACATTA 5'& .||| |||||||| &5' ---------TAGTGCGTGCCTGTAAT 3' NPHP1 hsa-miR-513a-5p beg:650 end:666 pic:3' TACTGTGGAGGGACACTT 5'& ||.| ||||||| &5' --GATAAA--CCTGTGA- 3' NPHP1 hsa-miR-542-3p beg:80 end:94 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& |||| ||||||| &5' --------ATCA--CTGTCAC- 3' NPHP1 ebv-miR-BART10star beg:1374 end:1396 pic:3' ACATGTCTTGGTTTCTCCACCG 5'& ||| ||||| .||||||| &5' TGTTT-GAACCTGGGAGGTGG- 3' NPHP1 ebv-miR-BART13 beg:1376 end:1404 pic:3' AGTCGGCAGGGACCGT------TCAATGT 5'& ..| ||||| | .|||.|| &5' ----TTGAACCTGGGAGGTGGAGGTTGCA 3' NPHP1 ebv-miR-BART14 beg:737 end:758 pic:3' TAGGGATGATGACGTCGTAAAT 5'& |. |. ||| ||||||| &5' --CTGTGTGTCTG-AGCATTT- 3' NPHP1 ebv-miR-BART16 beg:387 end:406 pic:3' TCTCGTGTGTGGGTGAGATAGATT 5'& .|.||| |||.||| &5' --------TATCCAAAATATTTAA 3' NPHP1 ebv-miR-BART19-3p beg:1422 end:1446 pic:3' TCGTAA----GGGTTCGTTTGTTTT 5'& ||| ||.|.|| |||||.| &5' -GCACTCCAGCCTAGGC-AACAAGA 3' NPHP1 ebv-miR-BART21-3p beg:864 end:888 pic:3' TTTGTGG--TCACCCGTGTTGATC 5'& |.| ||| ||||||.||| &5' -AGCTAATAAGT-GGCACAGCTA- 3' NPHP1 ebv-miR-BART5star beg:1187 end:1211 pic:3' TCCA---CTTGTCGCCGGGTG 5'& ||| | .|.|.|||.||| &5' AGGCCAGGCGCGGTGGCTCAC 3' NPHP1 ebv-miR-BART7star beg:378 end:390 pic:3' ACAAAGTATCAGTTCCAGGTCC 5'& ||||||.|| &5' ------------AAGGTCTAG- 3' NPHP1 ebv-miR-BART9 beg:403 end:420 pic:3' TGATGCCCTGGGTACTTCACAAT 5'& |...||| ||||||| &5' --------ATTTATG-AGTGTTA 3' NPHP1 hsa-miR-877star beg:438 end:449 pic:3' GACCCTCCTCCCTCTTCTCCT 5'& |||||||| &5' -------------GAAGAGGA 3' NPHP1 kshv-miR-K12-3 beg:490 end:510 pic:3' AGC-GACGGCAGGAGTCTTACACT 5'& | ||| ||. |||||||| &5' --GTCTGATA--CTT-GAATGTGA 3' NPHP1 hsa-miR-4274 beg:661 end:672 pic:3' GTCCCCCTCCCTGACGAC 5'& |||||||| &5' ----------GACTGCTG 3' NPHP1 hsa-miR-1825 beg:600 end:612 pic:3' CCTCTCCTCCCGTGACCT 5'& ||||||||| &5' ---------GGCACTGGA 3' NPHP1 hsa-miR-3126-3p beg:824 end:841 pic:3' AGACACACTGCCTACGGTCTAC 5'& || ||||||| &5' -------GAAACAGGCCAGAT- 3' NPHP1 hsa-miR-1226star beg:4 end:23 pic:3' GGGGTAGGTCCGGACGTACGGGAGTG 5'& || |||| .| ||||||| &5' -------CA-GCCTCTA-GCCCTCA- 3' NPHP1 hsa-miR-562 beg:1343 end:1355 pic:3' CGTTTACCATGTCGATGAAA 5'& ||||||||| &5' ----------CAGCTACTT- 3' NPHP1 hsa-miR-218-1star beg:66 end:80 pic:3' GGTACCACGAACTGCCTTGGTA 5'& |||.||||||| &5' ----------TGATGGAACCA- 3' NPHP1 hsa-miR-744star beg:1435 end:1445 pic:3' TCCAACTCCAATCACCGTTGTC 5'& ||||||| &5' --------------GGCAACA- 3' NPHP1 hsa-miR-4329 beg:1145 end:1163 pic:3' CACCTTGATCCCAGAGTCC 5'& ||.| ||||||| &5' ---GAGCCCCAGTCTCAG- 3' NPHP1 hsa-miR-183 beg:1405 end:1424 pic:3' TCACTTAAGATGGT-----CACGGTAT 5'& .||| ||||||| &5' ----------GCCAAGATCGTGCCAT- 3' NPHP1 hsa-miR-1227 beg:873 end:883 pic:3' GACCCCTTTTCCCACCGTGC 5'& ||||||| &5' ------------GTGGCAC- 3' NPHP1 hcmv-miR-UL112 beg:70 end:96 pic:3' TCGGACCTAG------AGTGGCAGTGAA 5'& |||| ||||.||||||| &5' ----TGGAACCAAAAATCACTGTCACTT 3' NPHP1 hcmv-miR-UL36star beg:1372 end:1392 pic:3' CGTGCAACTTTTGTGGACCTTT 5'& ||| ||||||.|. &5' -----TTGTTTGAACCTGGGAG 3' NPHP1 hcmv-miR-UL36star beg:599 end:614 pic:3' CGTGCAACTTTTGTGGACCTTT 5'& |..|| |||||.| &5' ---------AGGCA-CTGGAGA 3' NPHP1 hcmv-miR-UL70-5p beg:1225 end:1245 pic:3' AGACCTGCTCCGGCTCTGCGT 5'& |.||| ||||||||| | &5' TTTGG--GAGGCCGAGGTG-- 3' NPHP1 hcmv-miR-US25-2-3p beg:1228 end:1248 pic:3' GGCGCCCTCGAGAGGTTCACCTA 5'& ||||| | | |.||||.| &5' ----GGGAGG-C-CGAGGTGGGT 3' NPHP1 hiv1-miR-N367 beg:1244 end:1265 pic:3' AACTTCGTGGTAGGTTTCCAGTCA 5'& |. | |.|| || .||||||| &5' --GGTGGATCA-CCTGAGGTCAG- 3' NPHP1 hsa-let-7a beg:924 end:945 pic:3' TTGATATGTTGGAT-------GATGGAGT 5'& ||||| ||.|||.| &5' ---------ACCTAAGATGTTCTGCCTTA 3' NPHP1 hsa-let-7a-2star beg:1384 end:1405 pic:3' CCTTTCGATCCTCCGACATGTC 5'& ||.|.|. |||||.|| ||| &5' GGGAGGT--GGAGGTTG--CAG 3' NPHP1 hsa-let-7b beg:918 end:945 pic:3' TTGGTGTGTTGGAT-------GATGGAGT 5'& .|||||||| ||.|||.| &5' -----TACAACCTAAGATGTTCTGCCTTA 3' NPHP1 hsa-let-7c beg:918 end:945 pic:3' TTGGTATGTTGGAT-------GATGGAGT 5'& ||||||||| ||.|||.| &5' -----TACAACCTAAGATGTTCTGCCTTA 3' NPHP1 hsa-miR-101 beg:787 end:807 pic:3' AAGTCAA-TAGTGTCATGACAT 5'& .|| || .||||||| &5' --TAGGAGATA--GGTACTGT- 3' NPHP1 hsa-miR-105 beg:1345 end:1383 pic:3' TGGTG--TCCTCAGACTC----------GTAAACT 5'& .|.|| .|||| ||||| ..||||| &5' GCTACTTGGGAGGCTGAGGTAGAAGAATTGTTTGA 3' NPHP1 hsa-miR-106astar beg:1408 end:1427 pic:3' CATTCTT-CACGAATGTAACGTC 5'& |||| |||| ||||||| &5' --AAGATCGTGC---CATTGCA- 3' NPHP1 hsa-miR-1182 beg:625 end:642 pic:3' CAGTGTAGGGAGGGTTCTGGGAG 5'& |||| | ||.||.| &5' -------CCCTTTC-AGGCCTT- 3' NPHP1 hsa-miR-1202 beg:656 end:675 pic:3' GAGGGGGTGACGTCGACCGTG 5'& || . | |||||.| &5' ----CCTGTGACTGCTGGTA- 3' NPHP1 hsa-miR-122 beg:1414 end:1433 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& . |||||| ||||||| &5' ---GTGCCATTG---CACTCCA 3' NPHP1 hsa-miR-1224-3p beg:1227 end:1247 pic:3' GACTCCTCTCTCCTCCACCCC 5'& || ||||. |||||||| &5' -TG-GGAGGCC-GAGGTGGG- 3' NPHP1 hsa-miR-1228 beg:1384 end:1408 pic:3' CCCC-CCG-CTCCGTCCACACT 5'& ||| ||. ||||. |||| &5' -GGGAGGTGGAGGTTGCAGTGA 3' NPHP1 hsa-miR-1231 beg:1422 end:1442 pic:3' CGTCGACAGG-CGGGTCTGTG 5'& || ||| |||.||.|| &5' ---GCACTCCAGCCTAGGCA- 3' NPHP1 hsa-miR-1233 beg:1224 end:1244 pic:3' GACGCCCTCCTGTCCCGAGT 5'& || .|||||| |. ||. &5' CTTTGGGAGGCCGAGGT--- 3' NPHP1 hsa-miR-1234 beg:1351 end:1365 pic:3' CACCCCACCCACCAGTCCGGCT 5'& |||| ||||.|| &5' ------TGGG-----AGGCTGA 3' NPHP1 hsa-miR-1236 beg:1351 end:1374 pic:3' GACCTCTCTG-TTCCC-CTTCTCC 5'& ||| |||.| .||| ||||| &5' -TGG-GAGGCTGAGGTAGAAGA-- 3' NPHP1 hsa-miR-1238 beg:981 end:992 pic:3' CCCCGTCTGTCTGCTCCTTC 5'& |.|||||| &5' -----------ATGAGGAA- 3' NPHP1 hsa-miR-1244 beg:235 end:256 pic:3' TTGGTAGAGTATGTTTGGTTGATGAA 5'& |.||| ||| ||.|||||| &5' -----TTTCAA--AAA-CAGCTACTT 3' NPHP1 hsa-miR-1244 beg:1329 end:1355 pic:3' TTGGTAGAGTATG-----TTTGGTTGATGAA 5'& |.|.| | |||.|||||| &5' --------CGTGCCTGTAATCCCAGCTACTT 3' NPHP1 hsa-miR-1246 beg:447 end:466 pic:3' GGACGAGGTTTTTAGGTAA 5'& |.| |. .||||||| &5' ---GTTAAAGTGATCCATT 3' NPHP1 hsa-miR-1254 beg:1419 end:1441 pic:3' TGACGTCCGAGGTCGAAGGTCCGA 5'& |.|||| ||||||| |.|||| &5' ATTGCA--CTCCAGC--CTAGGC- 3' NPHP1 hsa-miR-1275 beg:1270 end:1291 pic:3' CT-GTCGGAGAGGGGGTG 5'& || |||||| || ||| &5' GACCAGCCTGGCCAACAC 3' NPHP1 hsa-miR-1281 beg:1384 end:1403 pic:3' CCCTCT-CCTCCTCCGCT 5'& |||||. ||||| || &5' GGGAGGTGGAGGTTGC-- 3' NPHP1 hsa-miR-1287 beg:1265 end:1290 pic:3' CTGAGCT-TGGT--GACTAGGTCGT 5'& .|.|| |||| |||. ||| || &5' --TTTGAGACCAGCCTGG-CCAACA 3' NPHP1 hsa-miR-1289 beg:947 end:970 pic:3' TTTTACGTCTAAGGA----CCTGAGGT 5'& || || ||| |||.|||| &5' -----GC-GAA-CCTTTTAGGATTCCA 3' NPHP1 hsa-miR-1294 beg:767 end:782 pic:3' TCTGTTGTTACGGTT-GGAGTGT 5'& |..|| ||||||| &5' ----------GTTAATCCTCACA 3' NPHP1 hsa-miR-129-5p beg:380 end:397 pic:3' CGTTCGGGTC-TGGCGTTTTTC 5'& |.|.|.|| |.| ||||| &5' --AGGTCTAGTATC-CAAAA-- 3' NPHP1 hsa-miR-1297 beg:489 end:505 pic:3' GTGGACTTAATGAACTT 5'& .|||| |||||||| &5' --TCTGA--TACTTGAA 3' NPHP1 hsa-miR-1302 beg:667 end:689 pic:3' AAATCGTATTCATACAGGGTT 5'& |.|.| || ||||||||| &5' --TGGTAAAATAATGTCCCAA 3' NPHP1 hsa-miR-1304 beg:1037 end:1057 pic:3' GTGTAGAGTG-ACATCGGAGTTT 5'& | .| || ||||.||| &5' ------TGGCATGCTGCCTTAAA 3' NPHP1 hsa-miR-130a beg:1414 end:1430 pic:3' TACGGGAAAATTGTAACGTGAC 5'& .|||| |||||||| &5' GTGCC--------ATTGCACT- 3' NPHP1 hsa-miR-1322 beg:707 end:728 pic:3' GTCGTAGTCGT-CGTAGTAG 5'& |||.| |||| ||.|.| &5' CAGTAGCAGCCTGCGTTA-- 3' NPHP1 hsa-miR-135a beg:1052 end:1065 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& |||.|||||| &5' ------------AAAGAGCCAT- 3' NPHP1 hsa-miR-138-2star beg:780 end:799 pic:3' TTGGGACCACAGCACTTTATCG 5'& ||| ||| ||.|||| &5' ---CCTACTGTAG-GAGATAG- 3' NPHP1 hsa-miR-140-5p beg:73 end:90 pic:3' GATGGTATCCCATTTTGGTGAC 5'& |||| ||||.||||| &5' --ACCA------AAAATCACTG 3' NPHP1 hsa-miR-141star beg:1382 end:1395 pic:3' AGGTTGTGACATGACCTTCTAC 5'& ||||.||.|| &5' ------------CTGGGAGGTG 3' NPHP1 hsa-miR-143 beg:634 end:653 pic:3' CTCGATGTCACGAAGTAGAGT 5'& .| ||.| ||||||| &5' -----GCCTTGTTGCATCTCA 3' NPHP1 hsa-miR-143star beg:1405 end:1430 pic:3' TGGTCTCTA-CGTCGTGACGTGG 5'& .||| |||| |. ||.|||||. &5' GCCA-AGATCGTGCCATTGCACT 3' NPHP1 hsa-miR-144 beg:786 end:807 pic:3' TCATGTAGTAGATATGACAT 5'& ||| . || .|||||| &5' -GTAGGAGATAGGTACTGT- 3' NPHP1 hsa-miR-146astar beg:1055 end:1077 pic:3' GACTTCTTGACTT---AAAGTCTCC 5'& ||||.| |||.|||| &5' ---AAGAGCCATTTATTTTTAGAG- 3' NPHP1 hsa-miR-151-3p beg:479 end:496 pic:3' GGAGTTCCTCGAAGTCAGATC 5'& ||.|| ||||||||. &5' -CTTAA-----TTCAGTCTG- 3' NPHP1 hsa-miR-1538 beg:705 end:727 pic:3' TCCTTGTCGTCGTCGGGCCCGGC 5'& |||||.|||||||.| |.. &5' ---AACAGTAGCAGCCTGCGTT- 3' NPHP1 hsa-miR-154 beg:983 end:1004 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& .||| || | ||||||| &5' --GAGG-AAAA-GTTTAACCTA 3' NPHP1 hsa-miR-181a beg:490 end:508 pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& |.||.| | |||||||| &5' -----CTGATA-C-TTGAATGT- 3' NPHP1 hsa-miR-181b beg:490 end:508 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& |.||.| | ||||||| &5' -----CTGATA-CT-TGAATGT- 3' NPHP1 hsa-miR-181c beg:490 end:508 pic:3' TGAGTGGCTGTCCAACTTACAA 5'& |.||.| |||||||| &5' -----CTGATAC-TTGAATGT- 3' NPHP1 hsa-miR-181d beg:490 end:508 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& |.||. || ||||||| &5' -----CTGAT-ACT-TGAATGT- 3' NPHP1 hsa-miR-181d beg:1426 end:1451 pic:3' TGGGT-GG--CTGTTGTTACTTACAA 5'& .||| || |.|||||| ||.|| &5' -TCCAGCCTAGGCAACAA-GAGTG-- 3' NPHP1 hsa-miR-1825 beg:1385 end:1407 pic:3' CCTCT-CCTCC--CGTGACCT 5'& ||||. ||||| ||| || &5' GGAGGTGGAGGTTGCAGTG-- 3' NPHP1 hsa-miR-185 beg:101 end:126 pic:3' AGTCCT---TGACGGAAAGAGAGGT 5'& |.||| ||| |.|||||.||.| &5' TTAGGTTTTACT-CTTTTCTTTCTA 3' NPHP1 hsa-miR-185 beg:531 end:556 pic:3' AGTCCTTGACGGAAA--GAGAGGT 5'& || ||. ||.||| ||.|.|| &5' -CA-GAGTCGCTTTTGCCTTTTCA 3' NPHP1 hsa-miR-1909star beg:1186 end:1210 pic:3' GTCCCGTCCGTGGCCGTGAGT 5'& |||| |||||.| | .|||| &5' CAGGCCAGGCGCGGTGGCTCA 3' NPHP1 hsa-miR-1910 beg:1187 end:1208 pic:3' TCCGCCGTCCGTGTC-CTGACC 5'& |||| |||||.|.| |.|| &5' AGGC--CAGGCGCGGTGGCT-- 3' NPHP1 hsa-miR-1910 beg:1387 end:1408 pic:3' TCCGCCGTCC-GTGTC-CTGACC 5'& |||.|| ||| ..||| || &5' AGGTGG-AGGTTGCAGTGA---- 3' NPHP1 hsa-miR-193bstar beg:1447 end:1458 pic:3' AGTAGAGCGGGAGTTTTGGGGC 5'& .||||.|| &5' -------------GAAACTCC- 3' NPHP1 hsa-miR-193bstar beg:4 end:30 pic:3' AGTA-GAG--CGGGAGTTTTGGGGC 5'& || ||| |||||||. .||| &5' -CAGCCTCTAGCCCTCAGCTTCCC- 3' NPHP1 hsa-miR-194 beg:190 end:214 pic:3' AGGTGTACCTCAACGACAATGT 5'& |..|.| ||| ||||||.| &5' TTTATAAGGAATA-CTGTTATA 3' NPHP1 hsa-miR-196b beg:1272 end:1297 pic:3' GGGTTGTTGTCCTT---TGATGGAT 5'& |||.| || ||||.||. &5' -CCAGCCT--GGCCAACACTATCTG 3' NPHP1 hsa-miR-199b-5p beg:597 end:611 pic:3' CTTGTCTATCAGATTTGTGACCC 5'& || |..|||||| &5' ----------TC-AGGCACTGG- 3' NPHP1 hsa-miR-19astar beg:660 end:679 pic:3' ACATCACGTTGATA--CGTTTTGA 5'& || |||. |.||||. &5' -----TGTGACTGCTGGTAAAAT- 3' NPHP1 hsa-miR-202 beg:680 end:700 pic:3' AAGGGTACGGGATATGGAGA 5'& ||||| |||.| |||.| &5' -TCCCAAGCCTTT--CCTTT 3' NPHP1 hsa-miR-205 beg:1169 end:1182 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& ||| ||||||| &5' ----------TGGTATGAAGG- 3' NPHP1 hsa-miR-205 beg:1378 end:1399 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& || |.|| | .||.||| &5' --GAACCTGG-GAGGTGGAGG- 3' NPHP1 hsa-miR-2052 beg:730 end:755 pic:3' TGTA-ATGACA-ATAGTTTTGT 5'& .|| |||||| |.|| .|.|| &5' GCACCTACTGTGTGTCTGAGCA 3' NPHP1 hsa-miR-20a beg:82 end:98 pic:3' GATGGACGTGATATTCGTGAAAT 5'& ||||.| ||||||| &5' -------CACTGT---CACTTTA 3' NPHP1 hsa-miR-212 beg:197 end:212 pic:3' CCGGCACTGACCTC-TGACAAT 5'& ||| ||||||| &5' ----------GGAATACTGTTA 3' NPHP1 hsa-miR-218-1star beg:20 end:39 pic:3' GGTACCACGAAC--TGCCTTGGTA 5'& |||| ||||||.|| &5' -------GCTTCCCACGGAATCA- 3' NPHP1 hsa-miR-218-2star beg:1045 end:1065 pic:3' GCGCCACGAACTG-TCTTGGTAC 5'& || ||| |||.|||| &5' -GC--TGCCTTAAAAGAGCCAT- 3' NPHP1 hsa-miR-219-1-3p beg:2 end:27 pic:3' GCCC-TGCAGGTCT-GAGTTGAGA 5'& || .| ||.|| ||||.||. &5' -GGCAGCCTCTAGCCCTCAGCTT- 3' NPHP1 hsa-miR-2278 beg:1185 end:1209 pic:3' GGTCCGTTGTGTGTGA-CGAGAG 5'& |||||| | .|.|. | |||| &5' CCAGGCCAGGCGCGGTGGCTC-- 3' NPHP1 hsa-miR-22star beg:1357 end:1377 pic:3' ATTTCGAA--CGGTGACTTCTTGA 5'& |.||| |. ||||||.| &5' --AGGCTGAGGTA---GAAGAATT 3' NPHP1 hsa-miR-23a beg:959 end:975 pic:3' CCTTTAGGGACCGTTACACTA 5'& ..||.|| |||||| &5' --GGATTCC-----ATGTGA- 3' NPHP1 hsa-miR-23b beg:960 end:975 pic:3' CCATTAGGGACCGTTACACTA 5'& .||.|| |||||| &5' ---GATTCC-----ATGTGA- 3' NPHP1 hsa-miR-24 beg:1395 end:1412 pic:3' GACAAGGACGACTTGACTCGGT 5'& |.|| | ||||||| &5' --------GTTGCAGTGAGCCA 3' NPHP1 hsa-miR-26a beg:485 end:505 pic:3' TCGGATAGGACCTAATGAACTT 5'& .| .||. || |||||||| &5' --TCAGTCT--GA-TACTTGAA 3' NPHP1 hsa-miR-26a-2star beg:329 end:351 pic:3' CTTTGTTCATTAGTTCTTATCC 5'& |||||| |||||.|| &5' -AAACAACCTAC--AGAATGGG 3' NPHP1 hsa-miR-26b beg:489 end:505 pic:3' TGGATAGGACTTAATGAACTT 5'& .|||| |||||||| &5' ------TCTGA--TACTTGAA 3' NPHP1 hsa-miR-299-5p beg:1389 end:1412 pic:3' TACATACACC-C---TGCCATTTGGT 5'& |||| | .| ||.|.||| &5' ------GTGGAGGTTGCAGTGAGCCA 3' NPHP1 hsa-miR-29b-1star beg:1258 end:1280 pic:3' AGATTTGGTGG-TATACTTTGGTCG 5'& .|| .| |||.|||||| &5' ------TCAGGAGTTTGAGACCAGC 3' NPHP1 hsa-miR-301a beg:1410 end:1430 pic:3' CGAAACTGTTATGATAACGTGAC 5'& ||. .|.| |||||||| &5' -----GATCGTGCCATTGCACT- 3' NPHP1 hsa-miR-301b beg:1410 end:1430 pic:3' CGAAACTGTTATAGTAACGTGAC 5'& ||. .|. ||||||||| &5' -----GATCGTGCCATTGCACT- 3' NPHP1 hsa-miR-302a beg:1012 end:1032 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& || ||| ||.|.|||| &5' TC-CCATTA----GAGGTACTT- 3' NPHP1 hsa-miR-302b beg:736 end:758 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& |||||. . | .||||.|| &5' CTACTGT-GTGTCTGAGCATTT- 3' NPHP1 hsa-miR-302c beg:1014 end:1032 pic:3' GGTGACTTTGTACCTTCGTGAAT 5'& |||.| ||.|.|||| &5' CCATTA-------GAGGTACTT- 3' NPHP1 hsa-miR-302d beg:730 end:758 pic:3' TGTGAGTT--TGTACC--TTCGTGAAT 5'& .||| | . || .||||.|| &5' GCAC-CTACTGTGTGTCTGAGCATTT- 3' NPHP1 hsa-miR-302f beg:834 end:854 pic:3' TTTGTAC-CTTCGTTAAT 5'& |.|.| | ||||.|||| &5' AGATAAGTGAAGTAATT- 3' NPHP1 hsa-miR-30bstar beg:17 end:31 pic:3' CTTCATTTGTAGGTGGAGGGTC 5'& || .|.||||| &5' ----------TCAGCTTCCCA- 3' NPHP1 hsa-miR-3115 beg:1271 end:1294 pic:3' TGGTT-GATCATTTG-GGTATA 5'& ||||. ||.| ||| |.|| &5' ACCAGCCTGGCCAACACTAT-- 3' NPHP1 hsa-miR-3135 beg:1418 end:1442 pic:3' GTGACGTCAGAGTCGGATCCGT 5'& ||.|||| || ||||||||||| &5' CATTGCACTC-CAGCCTAGGCA 3' NPHP1 hsa-miR-3140 beg:267 end:285 pic:3' TGATGGACTTAAGG-GTTTTCGA 5'& || |||. .|||||| &5' -------GATTTCTATAAAAGC- 3' NPHP1 hsa-miR-3145 beg:382 end:404 pic:3' GTTAAGGTTTGTGAGTTTTATAGA 5'& ||.|. | ||||||||.| &5' ----TCTAGTATC-CAAAATATTT 3' NPHP1 hsa-miR-3150 beg:5 end:31 pic:3' GGTTGGAGCTCCTA----GAGGGGTC 5'& ||.|||| || ||.|||| &5' -CAGCCTCTAGCCCTCAGCTTCCCA- 3' NPHP1 hsa-miR-3153 beg:678 end:698 pic:3' TTTACAGGGATGAGCGAAAGGGG 5'& |||||||| | | ||||||.. &5' -AATGTCCC-AAGC-CTTTCCTT 3' NPHP1 hsa-miR-3157 beg:1419 end:1441 pic:3' TCTGACGTGA--TCGGA-CCGACTT 5'& |.|||||| ||||| ||| &5' --ATTGCACTCCAGCCTAGGC---- 3' NPHP1 hsa-miR-3159 beg:1199 end:1222 pic:3' CACCGGCTGTGAACATTAGGAT 5'& |||||. ||.| |||||||| &5' GTGGCTCACGCCTGTAATCC-- 3' NPHP1 hsa-miR-3160 beg:6 end:27 pic:3' ACCCGAAAGATCA-GAGTCGAGA 5'& || ||||| |||||||. &5' ---GCC-TCTAGCCCTCAGCTT- 3' NPHP1 hsa-miR-3164 beg:848 end:868 pic:3' GCGGTAAAGGGAATTTCAGTGT 5'& |||| || |||.|||||| &5' ----ATTTGCC-TAAGGTCACA 3' NPHP1 hsa-miR-3167 beg:1057 end:1081 pic:3' TGTGGTC-ATAAAGA-CTTTAGGA 5'& .||| |||||.| ||.|||. &5' --GCCATTTATTTTTAGAGATCT- 3' NPHP1 hsa-miR-3170 beg:1331 end:1349 pic:3' TGACAGACAGAGTCTTGGGGTC 5'& || |||| ||.||||| &5' --TGCCTGT-----AATCCCAG 3' NPHP1 hsa-miR-3170 beg:1006 end:1019 pic:3' TGACAGACAGAGTCTTGGGGTC 5'& |.||||.|||| &5' ----------TTAGAATCCCA- 3' NPHP1 hsa-miR-3170 beg:1208 end:1224 pic:3' TGACAGACAGAGTCTTGGGGTC 5'& | |||| ||.|||| &5' ---GCCTGT-----AATCCCA- 3' NPHP1 hsa-miR-3172 beg:1445 end:1459 pic:3' ATTCCTGACGTTTTGGGGT 5'& | ||||.||| &5' --------GTGAAACTCCA 3' NPHP1 hsa-miR-3176 beg:1333 end:1352 pic:3' GGCCATCAGGGTCCGGTCA 5'& || ||| ||||| ||.| &5' CCTGTAATCCCA-GCTA-- 3' NPHP1 hsa-miR-3184 beg:679 end:696 pic:3' TTTTCGAGCCAGACTCCGGGGAGT 5'& ||| |||..|| &5' ---------GTCCCAAGCCTTTC- 3' NPHP1 hsa-miR-3187 beg:1270 end:1288 pic:3' GGC-GCGTCGGGGTACCGGTT 5'& | | ||||| ||||||| &5' --GAC-CAGCC---TGGCCAA 3' NPHP1 hsa-miR-3195 beg:1379 end:1395 pic:3' TTGGGCCCGGGCCGCGC 5'& ||||.||| ||.| &5' AACCTGGGA--GGTG-- 3' NPHP1 hsa-miR-323-5p beg:1233 end:1257 pic:3' CGCTTGCGCGGTGCCTGGTGGA 5'& || .| |.| .|||.||||| &5' GCCGAGGTGGG-TGGATCACCT 3' NPHP1 hsa-miR-330-5p beg:818 end:840 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& ||| |||| ||||| ||||| &5' GCCGAAGAAACAGG-CCAGA-- 3' NPHP1 hsa-miR-335star beg:956 end:978 pic:3' CCAGTCCTCGTTATTACTTTTT 5'& |.|||| .|||||| &5' --TTAGGATTCCATGTGAAAA- 3' NPHP1 hsa-miR-342-5p beg:1418 end:1432 pic:3' AGTTAGTGTCTATCGTGGGGA 5'& ||. ||||.|| &5' -----CATT----GCACTCC- 3' NPHP1 hsa-miR-34a beg:72 end:93 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||||| |||||.|| &5' --AACCAAAAAT--CACTGTCA 3' NPHP1 hsa-miR-34c-3p beg:686 end:707 pic:3' GGACCGGCACACC-AATCACTAA 5'& ||| |||||||| &5' ----GCCTTTCCTTTTAGTGAT- 3' NPHP1 hsa-miR-361-5p beg:656 end:676 pic:3' CATGGGGAC-CTCTAAGACTATT 5'& |||| || |||.||| &5' -----CCTGTGACTG-CTGGTAA 3' NPHP1 hsa-miR-377star beg:0 end:15 pic:3' CTTAAGTGGTTCCCGTTGGAGA 5'& ||. ||||.||||| &5' --------CAGTGGCAGCCTCT 3' NPHP1 hsa-miR-378 beg:372 end:391 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& ||||. |.|||.||| &5' ----CTGATAA-AGGTCTAGT 3' NPHP1 hsa-miR-378star beg:1245 end:1268 pic:3' TGTGTCCT---GGACCTCAGTCCTC 5'& ||| |||| |||||||| &5' -----GGATCACCTGAGGTCAGGAG 3' NPHP1 hsa-miR-382 beg:84 end:104 pic:3' GCTTAGGTGGTGCT-TGTTGAAG 5'& | .||| ||||||| &5' -----CTGTCACTTTACAACTT- 3' NPHP1 hsa-miR-412 beg:1238 end:1262 pic:3' TGCCGATCACCTGGTCCACTTCA 5'& ||. .|||||.|| |||.|| &5' --GGTGGGTGGATCACCTGAGGT 3' NPHP1 hsa-miR-4252 beg:1189 end:1208 pic:3' ACCACGA-CTGAGTCACCGG 5'& || |.| |.|||||. &5' ----GCCAGGCGCGGTGGCT 3' NPHP1 hsa-miR-4253 beg:1271 end:1292 pic:3' TGGG-GGACCTGTACGGGA 5'& ||| ||||| || |. &5' ACCAGCCTGGCCAACACT- 3' NPHP1 hsa-miR-4254 beg:1175 end:1194 pic:3' CTCTACCACCTCATCGAGGTCCG 5'& || |||| .||||||| &5' --GAAGGTGT-----TTCCAGGC 3' NPHP1 hsa-miR-4256 beg:1250 end:1266 pic:3' TGGAAGTAGTCCAGTCTA 5'& |||| |||||||. &5' ACCTG----AGGTCAGG- 3' NPHP1 hsa-miR-4258 beg:1190 end:1207 pic:3' GGTTC-CGCCACCGCCCC 5'& |||.| |||||||| &5' CCAGGCGCGGTGGC---- 3' NPHP1 hsa-miR-4259 beg:1329 end:1351 pic:3' AGGACTGGGGATCTGGGTTGAC 5'& | || ||. || ||||.|| &5' -CGTG-CCTGTAATCCCAGCT- 3' NPHP1 hsa-miR-4260 beg:668 end:690 pic:3' ACCCTGAGG-TACGGGGTTC 5'& || |||.|||||| &5' -GGTAAAATAATGTCCCAAG 3' NPHP1 hsa-miR-4263 beg:1430 end:1450 pic:3' CCGGTTCCGTGAATCTTA 5'& ||| ||||| |||.| &5' -GCCTAGGCAACAAGAGT 3' NPHP1 hsa-miR-4263 beg:1356 end:1376 pic:3' CCGGTTCCGTGAATCTTA 5'& ||| |||.| ||||| &5' GGCTGAGGTAGA-AGAAT 3' NPHP1 hsa-miR-4264 beg:1356 end:1366 pic:3' TTACTGGTACTGACTCA 5'& |.||||| &5' ---------GGCTGAG- 3' NPHP1 hsa-miR-4265 beg:1349 end:1373 pic:3' GGGTC--TCGACTCGGGTGTC 5'& |. | .|||||| . || &5' CTTGGGAGGCTGAGGTAGAAG 3' NPHP1 hsa-miR-4269 beg:1319 end:1341 pic:3' CGGTCCCGACAGACACGGACG 5'& | |. ||. || |||||||. &5' GGCGTGGTAGTGCGTGCCTGT 3' NPHP1 hsa-miR-4271 beg:105 end:127 pic:3' GGGGTG-GAAAAGAAGGGGG 5'& ...|| ||||||||.| | &5' -TTTACTCTTTTCTTTCTAC 3' NPHP1 hsa-miR-4273 beg:454 end:472 pic:3' GAC-AGGTAGTCTCTTGTG 5'& || |||||. ||||| &5' -TGATCCATTTGAGAA--- 3' NPHP1 hsa-miR-4279 beg:1378 end:1397 pic:3' CTTCGGCCCTCC-TCTC 5'& ||| |.|||||| .||| &5' GAACCTGGGAGGTGGAG 3' NPHP1 hsa-miR-4280 beg:1412 end:1431 pic:3' CGAG-ACGAGTCTTGATGTGAG 5'& || ||| || .|.||||| &5' --TCGTGC-CA---TTGCACTC 3' NPHP1 hsa-miR-4283 beg:1134 end:1156 pic:3' TTTGAGC--GACTCGGGGT 5'& |||.|. .||||||||| &5' AAATTTAACTTGAGCCCCA 3' NPHP1 hsa-miR-4283 beg:1392 end:1411 pic:3' TTTGAGCG--ACTCGGGGT 5'& .|. |.|| |||||| &5' GAGGTTGCAGTGAGCC--- 3' NPHP1 hsa-miR-4283 beg:1307 end:1323 pic:3' TTTGAGCGACTCGGGGT 5'& |||.| ||||.|| &5' AAATTAGCTGGGC---- 3' NPHP1 hsa-miR-4284 beg:1389 end:1411 pic:3' TACC-CCACTA-CACTCGGG 5'& .||| ||| ||||||| &5' GTGGAGGTTGCAGTGAGCC- 3' NPHP1 hsa-miR-4285 beg:1262 end:1281 pic:3' TACTC-AGC-CTGAGCGGCG 5'& ||| |.| ||| ||| &5' --GAGTTTGAGACCAGCC-- 3' NPHP1 hsa-miR-4291 beg:657 end:673 pic:3' TCGACAAGGACGACTT 5'& |||| ||||||. &5' --CTGTGACTGCTGG- 3' NPHP1 hsa-miR-4294 beg:260 end:277 pic:3' GGGACGACATCTGAGGG 5'& || | ||||.|.|. &5' ---TGGTATAGATTTCT 3' NPHP1 hsa-miR-4295 beg:1418 end:1430 pic:3' TTCCTTTTGTAACGTGAC 5'& ||||||||| &5' --------CATTGCACT- 3' NPHP1 hsa-miR-4297 beg:1222 end:1238 pic:3' GTGTCTGTCCTTCCGT 5'& ||| ||.|||| &5' CACTTT--GGGAGGC- 3' NPHP1 hsa-miR-4297 beg:1343 end:1362 pic:3' GTGTC--TGT-CCTTCCGT 5'& ||| || ||.|||| &5' --CAGCTACTTGGGAGGC- 3' NPHP1 hsa-miR-4303 beg:638 end:655 pic:3' GACAGGAGTCGAGTCTT 5'& |||. || |||||| &5' -TGTTG-CATCTCAGA- 3' NPHP1 hsa-miR-4303 beg:1147 end:1165 pic:3' GACAGGAGTC-GAGTCTT 5'& | || ||| ||||||| &5' --G-CCCCAGTCTCAGAA 3' NPHP1 hsa-miR-4306 beg:107 end:126 pic:3' ATGACGGAAAGAGAGGT 5'& |||| |.|||||.||.| &5' TACT-CTTTTCTTTCTA 3' NPHP1 hsa-miR-4306 beg:538 end:556 pic:3' ATGACGGAAA--GAGAGGT 5'& ||.||| ||.|.|| &5' ----GCTTTTGCCTTTTCA 3' NPHP1 hsa-miR-4308 beg:1441 end:1459 pic:3' TTCTT-CTTTGAGGTCCCT 5'& ||||. ||||||||| &5' AAGAGTGAAACTCCA---- 3' NPHP1 hsa-miR-4309 beg:947 end:970 pic:3' AC-CTTAGGA----TCTGAGGTC 5'& | ||| ||| .||.|||| &5' -GCGAA-CCTTTTAGGATTCCA- 3' NPHP1 hsa-miR-4311 beg:107 end:124 pic:3' GTGTGAGTCGAGAGAAAG 5'& .|||| .|.|||||| &5' --TACTC--TTTTCTTTC 3' NPHP1 hsa-miR-4315 beg:859 end:880 pic:3' CAG-GTCGAGTCTTTCGCC 5'& ||| ||||| |||.|| &5' GTCACAGCTAAT-AAGTGG 3' NPHP1 hsa-miR-4316 beg:1271 end:1292 pic:3' GTGGTC-GATCGGA-GTGG 5'& ||||| ||.||| |||. &5' -ACCAGCCTGGCCAACACT 3' NPHP1 hsa-miR-4316 beg:1425 end:1444 pic:3' GTGGTC-GATCGGAGTGG 5'& | |||| |||| | || &5' CTCCAGCCTAGGCA-AC- 3' NPHP1 hsa-miR-4320 beg:442 end:463 pic:3' TCCTTCGATGTC-TTAGGG 5'& ||||||.|| || .|||| &5' AGGAAGTTAAAGTGATCC- 3' NPHP1 hsa-miR-4320 beg:949 end:969 pic:3' TCCTTCGAT-GTCTTAGGG 5'& ||| || .||.||.|| &5' --GAACCTTTTAGGATTCC 3' NPHP1 hsa-miR-4326 beg:1225 end:1243 pic:3' CAGACCCTCTGTCTCCTTGT 5'& |.||||||.| |||| &5' -TTTGGGAGGCCGAGG---- 3' NPHP1 hsa-miR-4327 beg:10 end:30 pic:3' GGTCAGGGGGTACGTTCGG 5'& |.|| |||.|| || || &5' CTAG-CCCTCA-GCTTCCC 3' NPHP1 hsa-miR-432star beg:1055 end:1068 pic:3' TCTGTACCTCCTCGGTAGGTC 5'& |||||||..| &5' ----------GAGCCATTTA- 3' NPHP1 hsa-miR-4330 beg:730 end:753 pic:3' CGTTCC-GAGAC-TAGACTCC 5'& ||| || || .|||||| &5' GCACCTACTGTGTGTCTGAG- 3' NPHP1 hsa-miR-433 beg:1073 end:1093 pic:3' TGTGGCTCCT--CGG-GTAGTACTA 5'& ||| |.| .||.|||| &5' -----GAGATCTGTCATATTATGA- 3' NPHP1 hsa-miR-449a beg:73 end:93 pic:3' TGGTCGATTGTTATGTGACGGT 5'& |||| ||| |||||.|| &5' ACCAAA----AAT-CACTGTCA 3' NPHP1 hsa-miR-449cstar beg:1385 end:1410 pic:3' TGTCTCT-CCTC--ACGTTGATCGTT 5'& .|||. |||| ||||. ||| &5' --GGAGGTGGAGGTTGCAGTGAGC-- 3' NPHP1 hsa-miR-450b-3p beg:1208 end:1225 pic:3' ATACCTACGTTTTACTAGGGTT 5'& || .| ||||||| &5' -------GCCT-GTAATCCCAA 3' NPHP1 hsa-miR-450b-5p beg:345 end:367 pic:3' ATAAGTCCT--TGTAT-AACGTTTT 5'& .||| ||||| ||||||| &5' -----GGGAAAACATATTTGCAAA- 3' NPHP1 hsa-miR-452 beg:691 end:714 pic:3' AGTCAAAGGAG----AC-GTTTGTCAA 5'& ||||||. || .||||||| &5' ----TTTCCTTTTAGTGATAAACAGT- 3' NPHP1 hsa-miR-454 beg:1414 end:1430 pic:3' TGGGATATTCGTTATAACGTGAT 5'& |.. |||||||| &5' ---------GTGCCATTGCACT- 3' NPHP1 hsa-miR-485-5p beg:9 end:28 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& || .| .||||.|| &5' ----TCTA-GCCCTCAGCTTC- 3' NPHP1 hsa-miR-493star beg:894 end:916 pic:3' TTAC-TTTCGGATGGTACATGTT 5'& | |||| |||||||||.|| &5' ---GTAAAGA-TACCATGTATAA 3' NPHP1 hsa-miR-496 beg:874 end:894 pic:3' CTCTAACCG-GTACATTATGAGT 5'& |||| || |||||.|| &5' -----TGGCACAGCTAATATTC- 3' NPHP1 hsa-miR-509-5p beg:1410 end:1434 pic:3' ACTA--ACGGTGACA-GACGTCAT 5'& ||| |||||.|| || ||| &5' -GATCGTGCCATTGCACTCCAG-- 3' NPHP1 hsa-miR-513c beg:451 end:472 pic:3' TATTT-GCTGTGGAGGAACTCTT 5'& |||| .||. || .||||||| &5' -TAAAGTGAT-CCA-TTTGAGAA 3' NPHP1 hsa-miR-514b-5p beg:453 end:472 pic:3' TACTAACGGAGGGAGAACTCTT 5'& |. .|| .||||||| &5' ------GTGATCCATTTGAGAA 3' NPHP1 hsa-miR-515-3p beg:784 end:805 pic:3' TTGCGAGGTTTTCT-TCCGTGAG 5'& || .|..||| |||.||| &5' ----CTGTAGGAGATAGGTACT- 3' NPHP1 hsa-miR-515-3p beg:587 end:609 pic:3' TTGCGAGGTTTTCT-------TCCGTGAG 5'& |||||| ||||||| &5' --------AAAAGAAACTTTCAGGCACT- 3' NPHP1 hsa-miR-516a-3p beg:1217 end:1238 pic:3' TGGGAGACTT--TCCTTCGT 5'& ||| .|||.|| &5' -CCCAACACTTTGGGAGGC- 3' NPHP1 hsa-miR-516a-3p beg:1341 end:1362 pic:3' TGGGA-GACTT-TCCTTCGT 5'& ||| || .|||.|| &5' -CCCAGCTACTTGGGAGGC- 3' NPHP1 hsa-miR-516bstar beg:1217 end:1238 pic:3' TGGGAGACTT--TCCTTCGT 5'& ||| .|||.|| &5' -CCCAACACTTTGGGAGGC- 3' NPHP1 hsa-miR-516bstar beg:1341 end:1362 pic:3' TGGGA-GACTT-TCCTTCGT 5'& ||| || .|||.|| &5' -CCCAGCTACTTGGGAGGC- 3' NPHP1 hsa-miR-518e beg:1222 end:1245 pic:3' GTGAGA-CTTCC--CTTCGCGAAA 5'& ||||.| |.||| ||.|.| &5' CACTTTGGGAGGCCGAGGTG---- 3' NPHP1 hsa-miR-519d beg:1020 end:1033 pic:3' GTGAGATTTCCCTCCGTGAAAC 5'& ||||.||||| &5' -----------GAGGTACTTT- 3' NPHP1 hsa-miR-519e beg:1020 end:1032 pic:3' TTGTGAGATTTTCCTCCGTGAA 5'& ||||.|||| &5' -------------GAGGTACTT 3' NPHP1 hsa-miR-519e beg:782 end:805 pic:3' TTGTGAGATTTTCC-TCCGTGAA 5'& .||| ||..|| |||.||| &5' --TACTGTAGGAGATAGGTACT- 3' NPHP1 hsa-miR-520a-3p beg:1014 end:1033 pic:3' TGTCAGGTTTCCCTTCGTGAAA 5'& ||| ||.|.||||| &5' -----CCATTA-GAGGTACTTT 3' NPHP1 hsa-miR-520a-3p beg:743 end:758 pic:3' TGTCAGGTTTCCCTTCGTGAAA 5'& |||. .||||.|| &5' ---GTCT------GAGCATTT- 3' NPHP1 hsa-miR-520b beg:1013 end:1033 pic:3' GGGAGATTTTCCTTCGTGAAA 5'& ||| .|| ||.|.||||| &5' CCCATTA----GAGGTACTTT 3' NPHP1 hsa-miR-520c-3p beg:1013 end:1033 pic:3' TGGGAGATTTTCCTTCGTGAAA 5'& ||| .|| ||.|.||||| &5' -CCCATTA----GAGGTACTTT 3' NPHP1 hsa-miR-520d-3p beg:1013 end:1033 pic:3' TGGGTGGTTTCTCTTCGTGAAA 5'& ||||.. |||.|.||||| &5' -CCCATT----AGAGGTACTTT 3' NPHP1 hsa-miR-520e beg:1013 end:1033 pic:3' GGGAGTTTTTCCTTCGTGAAA 5'& || || ||.|.||||| &5' -CC-CATTA--GAGGTACTTT 3' NPHP1 hsa-miR-520f beg:592 end:609 pic:3' TTGGGAGATTTTCCTTCGTGAA 5'& |||..|| |.||||| &5' AACTTTC-------AGGCACT- 3' NPHP1 hsa-miR-520g beg:1221 end:1244 pic:3' TGTGAGATTTCCCTTCGTGAAACA 5'& |||||.| ||||.|| | || &5' ACACTTT---GGGAGGC-CGAGGT 3' NPHP1 hsa-miR-522 beg:1049 end:1067 pic:3' TGTGAGATTTCCCTTGGTAAAA 5'& .|||| ||.|||||| &5' -----TTAAAA-GAGCCATTT- 3' NPHP1 hsa-miR-526bstar beg:188 end:208 pic:3' CGGAGATTTTCCTTCGTGAAAG 5'& ..|.|| |||||| .||| &5' -TTTTTATAAGGAA-TACT--- 3' NPHP1 hsa-miR-527 beg:345 end:365 pic:3' CTTTCCCGAAGGG--AAACGTC 5'& ||| | |||||| &5' ----GGGAAAACATATTTGCA- 3' NPHP1 hsa-miR-542-3p beg:1066 end:1087 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& |||.|| .||||||||.| &5' TTTTAGA----GATCTGTCATA 3' NPHP1 hsa-miR-548b-5p beg:1054 end:1073 pic:3' CCGGTTTTGGTGTTAATGAAAA 5'& |.|.|||. |||.|||| &5' ----AGAGCCAT--TTATTTTT 3' NPHP1 hsa-miR-548k beg:1011 end:1034 pic:3' TCGTTTTAGGCGT-----TCATGAAAA 5'& .||||| || .|||||||| &5' ----GAATCC-CATTAGAGGTACTTTT 3' NPHP1 hsa-miR-548m beg:532 end:553 pic:3' GTTTTTGGTGTTTATGGAAAC 5'& |.| |.| |.||||| &5' --AGAGTCGCTTTTGCCTTT- 3' NPHP1 hsa-miR-548s beg:1270 end:1287 pic:3' TTTTATTGACGTCAAAACCGGTA 5'& .|| ||| |||||| &5' -----GAC--CAGCC-TGGCCA- 3' NPHP1 hsa-miR-548t beg:75 end:97 pic:3' GTTTTTGGTGCTAGTGAAAAC 5'& ||||||.||| .||||||| &5' CAAAAATCACTGTCACTTT-- 3' NPHP1 hsa-miR-550 beg:1178 end:1201 pic:3' CCCGAGAATGAGGGA--GTCCGTGA 5'& ||. .||| |||||.| &5' -GGTGT---TTCCAGGCCAGGCGC- 3' NPHP1 hsa-miR-551a beg:1229 end:1250 pic:3' ACCTTTGGTTCTCACCCAGCG 5'& |||..||.|| |||||| | &5' -GGAGGCCGAG-GTGGGTGG- 3' NPHP1 hsa-miR-564 beg:1405 end:1422 pic:3' CGGACGACTGTGGCACGGA 5'& || | |.|||||| &5' ----GCCAAGATCGTGCC- 3' NPHP1 hsa-miR-567 beg:344 end:361 pic:3' CAAGACAGGACCTTCTTGTATGA 5'& |||.| ||||||.| &5' ---------TGGGAAAACATATT 3' NPHP1 hsa-miR-570 beg:795 end:814 pic:3' CGTTTCCATTAACGACAAAAGC 5'& ||||| ||.||||||. &5' ----AGGTAC-TGTTGTTTTT- 3' NPHP1 hsa-miR-571 beg:1099 end:1120 pic:3' GAGTGAGTCTACCGGTTGAGT 5'& .|| ||.||||.| &5' ---GCTATCTTAGCTAACTTA 3' NPHP1 hsa-miR-573 beg:82 end:98 pic:3' GACTAGTCAATGTG-TAGTGAAGTC 5'& ||| .||||||.| &5' -----------CACTGTCACTTTA- 3' NPHP1 hsa-miR-578 beg:1428 end:1449 pic:3' TGTTAGGATCTCG-TGTTCTTC 5'& ||. ||||| || ||||||. &5' -CAG-CCTAG-GCAACAAGAG- 3' NPHP1 hsa-miR-582-3p beg:759 end:774 pic:3' CCAAGTCAACAAGTT-GGTCAAT 5'& |.|. ||||||| &5' -----------TTAGCCCAGTTA 3' NPHP1 hsa-miR-584 beg:115 end:135 pic:3' GAGTCAGGGTCCGTTTGGTATT 5'& || ||. ||.|||||| &5' -TCTTTCTA---CAGACCATA- 3' NPHP1 hsa-miR-586 beg:895 end:915 pic:3' CCTGGATTTTTATGTTACGTAT 5'& ||||.|||| |||.||| &5' -----TAAAGATACCATGTATA 3' NPHP1 hsa-miR-588 beg:1272 end:1288 pic:3' CAAGATTGGGTAACACCGGTT 5'& ||| ||||||| &5' --------CCAGCCTGGCCAA 3' NPHP1 hsa-miR-592 beg:865 end:885 pic:3' TGTAGTAGCGTATA---ACTGTGTT 5'& || ||.||||. &5' --------GCTAATAAGTGGCACAG 3' NPHP1 hsa-miR-596 beg:1381 end:1401 pic:3' GGGCTCCTCGGCCCGTCCGAA 5'& ||.| |||| .|| |||.| &5' CCTG-GGAGGTGG--AGGTT- 3' NPHP1 hsa-miR-597 beg:862 end:884 pic:3' TGTCACCAGTAGCTCACTGTGT 5'& |||| || ||||.|||| &5' ACAGCTA--ATA-AGTGGCACA 3' NPHP1 hsa-miR-599 beg:869 end:886 pic:3' CAAACTATTTGACTGTGTTG 5'& ||||. ||.||||.| &5' -----ATAAG-TGGCACAGC 3' NPHP1 hsa-miR-613 beg:875 end:895 pic:3' CCGTTTCTTCCTTGTAAGGA 5'& |||| || ||.||||| &5' GGCACAGCT--AATATTCC- 3' NPHP1 hsa-miR-617 beg:432 end:453 pic:3' CGGTGGAAGTTTA--C-CCTTCAGA 5'& ||||| | ||||||. &5' ------TTCAATGAAGAGGAAGTT- 3' NPHP1 hsa-miR-618 beg:783 end:808 pic:3' TGA-GTCTTCCTGTTCATCTCAAA 5'& ||| .||.| ||.|.||| ||| &5' ACTGTAGGA-GATAGGTACTGTT- 3' NPHP1 hsa-miR-622 beg:1425 end:1444 pic:3' CGAGGTTGGAGTCGTCTGACA 5'& |||||.||| .||| || &5' -CTCCAGCCTAGGCA-AC--- 3' NPHP1 hsa-miR-624 beg:624 end:644 pic:3' TCCATTATGGTTA----TGGAACAC 5'& ||| .|||||| &5' -------ACCCTTTCAGGCCTTGT- 3' NPHP1 hsa-miR-635 beg:851 end:862 pic:3' CCTGTAACAAAGTCACGGGTTCA 5'& ||||.||| &5' --------------TGCCTAAG- 3' NPHP1 hsa-miR-637 beg:0 end:24 pic:3' TGCGTC-TCGGGCTTTCGGGGGTCA 5'& | | ||||. |||||.||| &5' --GTGGCAGCCTCT-AGCCCTCAG- 3' NPHP1 hsa-miR-639 beg:1388 end:1408 pic:3' TGTCGCGAGCGTTGGCGTCGCTA 5'& | | | . ||||.|| &5' -----GGTGGAGGTTGCAGTGA- 3' NPHP1 hsa-miR-640 beg:1229 end:1254 pic:3' TCTCCG--TCCAAGGACCTAGTA 5'& .||||| |||| ||||||| &5' GGAGGCCGAGGTGGGTGGATCA- 3' NPHP1 hsa-miR-645 beg:1259 end:1284 pic:3' AGTCGTCA-----TGGTCGGATCT 5'& |||| ||| ||||||||.| &5' TCAGGAGTTTGAGACCAGCCTGG- 3' NPHP1 hsa-miR-650 beg:1031 end:1054 pic:3' CAGGACTCTCG--CGACGGAGGA 5'& |..||| .|| |||||||. &5' -TTTTGATGGCATGCTGCCTT-- 3' NPHP1 hsa-miR-651 beg:1107 end:1127 pic:3' GTTTTCAGTTCGAATAGGATTT 5'& || .|| ||||||||||| &5' ----AGCTAA-CTTATCCTAAA 3' NPHP1 hsa-miR-652 beg:1404 end:1425 pic:3' GTGTTGGGATCACCGCGGTAA 5'& |.|| |.|||||| &5' ---AGCCAAGATCGTGCCATT 3' NPHP1 hsa-miR-665 beg:15 end:29 pic:3' TCCCCGGAGTCGGAGGACCA 5'& |||||||.||| &5' -----CCTCAGCTTCC---- 3' NPHP1 hsa-miR-671-3p beg:1242 end:1267 pic:3' CCACCTCG-GGACTCTTGGCCT 5'& |||||| | ||||||. ||| &5' GGTGGATCACCTGAGGTCAGGA 3' NPHP1 hsa-miR-708 beg:1341 end:1363 pic:3' GGGTCGATCTAACA-TTCGAGGAA 5'& |||||||| ||| |.||| &5' CCCAGCTAC-TTGGGAGGCT---- 3' NPHP1 hsa-miR-718 beg:1378 end:1397 pic:3' GCTGCGGGCCGCCCCGCCTTC 5'& || ||.|| | ||.|||.| &5' -GAA-CCTGG-GAGGTGGAGG 3' NPHP1 hsa-miR-744star beg:1387 end:1414 pic:3' TCCAACTCCAA--TCAC-CGTTGTC 5'& |||| |||||| |||| || || &5' AGGTGGAGGTTGCAGTGAGCCA-AG 3' NPHP1 hsa-miR-758 beg:852 end:868 pic:3' CCAATCACCTGG--TCCAGTGTTT 5'& .|| ||||||||. &5' ---------GCCTAAGGTCACAG- 3' NPHP1 hsa-miR-769-3p beg:1206 end:1224 pic:3' TTGGTTCTGGGGCCTCTAGGGTC 5'& || || | |||||| &5' -------ACGCCTGTAATCCCA- 3' NPHP1 hsa-miR-875-3p beg:1172 end:1192 pic:3' GTGTTGGAGTCACAAAGGTCC 5'& .| | .||||||||||| &5' TATGAA---GGTGTTTCCAGG 3' NPHP1 hsa-miR-891b beg:1387 end:1404 pic:3' AGTTACTGAGTCCAT--TCAACGT 5'& ||||. .|||||| &5' ----------AGGTGGAGGTTGCA 3' NPHP1 hsa-miR-920 beg:13 end:30 pic:3' ATGACGAAGGTGTCGAGGGG 5'& || || |||||.||| &5' ----GC--CCTCAGCTTCCC 3' NPHP1 hsa-miR-92a-1star beg:1328 end:1351 pic:3' TCGTAACGTTGGC--TAGGGTTGGA 5'& ||. ||| |.| ||||||.|. &5' -GCG-TGC--CTGTAATCCCAGCT- 3' NPHP1 hsa-miR-939 beg:6 end:31 pic:3' GTGGGGGTCTCGGAGTCGAGGGGT 5'& .||.|.|| ||||||||.|||| &5' -GCCTCTAGC-CCTCAGCTTCCCA 3' NPHP1 hsv1-miR-H15 beg:936 end:952 pic:3' GCACCGCCGGGCCGGGCCCCGG 5'& |||. .|||||| &5' -------GCCTTA-TCGGGGC- 3' NPHP1 hsv1-miR-H18 beg:1228 end:1250 pic:3' CCAGGGCCGCAGGCCGCCCGCCC 5'& || ||| ||.|||.|| &5' GGGA--GGCCGA-GGTGGGTGG- 3' NPHP1 hsv1-miR-H3 beg:1142 end:1163 pic:3' CAGGGTT-GGCGTGTCAGGGTC 5'& |. | || | |||||.||| &5' --CTTGAGCC-C-CAGTCTCAG 3' NPHP1 hsv1-miR-H3star beg:1245 end:1268 pic:3' TGAGCCT--TGGGCGCCAGTCCTC 5'& .||| |||.| ||||||||| &5' ---TGGATCACCTGAGGTCAGGAG 3' NPHP1 hsv1-miR-H6-3p beg:1378 end:1395 pic:3' CCCTACCTTCCTGCCCTTCAC 5'& ||| .||||.||| &5' ------GAACC-TGGGAGGTG 3' NPHP1 hsv1-miR-H7star beg:380 end:398 pic:3' CTTCTCCCCAGCCC-TAGGTTT 5'& |||| | ||||||| &5' -------GGTCTAGTATCCAAA 3' NPHP1 hsv2-miR-H13 beg:1034 end:1056 pic:3' GTCACGAGCGTGAAACGGGATT 5'& || | |||. ||||.||| &5' ---TGATGGCATGCTGCCTTAA 3' NPHP1 hsv2-miR-H20 beg:1268 end:1288 pic:3' TCTTTCCCCAGGCATTGGTTT 5'& ||.| || |..|||| &5' -GAGACCAG-CC-TGGCCAA- 3' NPHP1 hsv2-miR-H5 beg:13 end:30 pic:3' CCAGTCCACCGGGC-TCGGGGGGG 5'& |||| |||..||| &5' ---------GCCCTCAGCTTCCC- 3' NPHP1 hsv2-miR-H6star beg:1227 end:1247 pic:3' TCCTACCTTCCCGTCTTCTACCC 5'& |||.| ||| .||.|||| &5' ----TGGGA-GGCC-GAGGTGGG 3' NPHP1 jcv-miR-J1-5p beg:1147 end:1165 pic:3' TACGAAAAGGGTCCAGAGTCTT 5'& || |||| ||||||||| &5' --GC----CCCA-GTCTCAGAA 3' NPHP1 jcv-miR-J1-5p beg:636 end:655 pic:3' TACGAAA-AGGGTCCAGAGTCTT 5'& || |. || ||||||| &5' --GCCTTGTTGCA--TCTCAGA- 3' NPHP1 kshv-miR-K12-1 beg:646 end:666 pic:3' CGAATGTGGGTCAAA--GGACATTA 5'& |.||| |||||.| &5' -------CTCAGATAAACCTGTGA- 3' NPHP1 kshv-miR-K12-6-3p beg:350 end:372 pic:3' GAGTTGTC-GGGCTTTTGGTAGT 5'& |||| ...| |||.|||| &5' ---AACATATTTGCAAATCATC- 3' NPHP1 kshv-miR-K12-8 beg:1320 end:1340 pic:3' ACGAGAGAGTCA-GCGCGGATC 5'& || .||| ||.||||. &5' -GCGTGG-TAGTGCGTGCCTG- 3' NPHP1 sv40-miR-S1-5p beg:683 end:696 pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& || |||..|| &5' -----------CAAGCCTTTC- 3' NPHP1 hsa-miR-204 beg:261 end:280 pic:3' TCCGTATCCTACTG--TTTCCCTT 5'& |||| |||||||| &5' --------GATGTGTAAAAGGGAA 3' NPHP1 hsa-miR-211 beg:261 end:280 pic:3' TCCGCTTCCTACTG--TTTCCCTT 5'& |||| |||||||| &5' --------GATGTGTAAAAGGGAA 3' NPHP1 bkv-miR-B1-3p beg:156 end:174 pic:3' CTGAGACCTGTACCTAGTTCGT 5'& ||||| | |||.||| &5' --CTCTGCCC-----TCAGGCA 3' NPHP1 ebv-miR-BART10 beg:80 end:107 pic:3' TGTCGGTTG-AGGTACC-AATACAT 5'& |||.|||| |..|| ||.|||| &5' -CAGTCAACATTTATTTATTGTGTA 3' NPHP1 ebv-miR-BART1-3p beg:106 end:122 pic:3' CTGTATCACCTATCG-CCACGAT 5'& |||| ||||.|| &5' ----------ATAGAAGGTGTTA 3' NPHP1 hsa-let-7astar beg:127 end:150 pic:3' CTTTCTGTCA-TCTA-ACATATC 5'& ||.|||..| ||| |||| &5' GAGAGATGGAAAGAAGTGTA--- 3' NPHP1 hsa-let-7f-2star beg:127 end:150 pic:3' CCTTTCTGTCA-TCTG-ACATATC 5'& ||.|||..| ||| |||| &5' -GAGAGATGGAAAGAAGTGTA--- 3' NPHP1 hsa-miR-1206 beg:203 end:224 pic:3' CGAATTTGTAGATGTACTTGT 5'& |.|| ||| ||||||| &5' ---TGAAAAGCTAAATGAACA 3' NPHP1 hsa-miR-1226star beg:148 end:170 pic:3' GGGGTAGGTCCGGACGTACGGGAGTG 5'& .|| |.|| | |||||||| &5' ----GTCATAGTCT-C-TGCCCTCA- 3' NPHP1 hsa-miR-141 beg:107 end:122 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& .||| .|||||| &5' ----------TAGAAGGTGTTA 3' NPHP1 hsa-miR-148bstar beg:99 end:115 pic:3' CGGACTCACATATTGTCTTGAA 5'& ||||||||.|||| &5' ------GTGTATAATAGAA--- 3' NPHP1 hsa-miR-152 beg:284 end:306 pic:3' GGTTCAAGACAGT---ACGTGACT 5'& | |||| ||||.|| &5' ----GGAATGTCTACTTGCATTG- 3' NPHP1 hsa-miR-15bstar beg:266 end:288 pic:3' ATCTCGTCGTTTA-TTACTAAGC 5'& | |.| |.. |||||||.| &5' --GTGTAAAAGGGAAATGATTTG 3' NPHP1 hsa-miR-183star beg:167 end:186 pic:3' AATACCGGGAAGCCATTAAGTG 5'& ||| ||. |||||.| &5' ----GGCAATTTA-TAATTTA- 3' NPHP1 hsa-miR-195star beg:252 end:265 pic:3' CCTCGTCGTGTCGGTTATAACC 5'& |.||||.||| &5' -----------GTCAATGTTG- 3' NPHP1 hsa-miR-200a beg:107 end:122 pic:3' TGTAGCAATGGTCTGTCACAAT 5'& .||| .|||||| &5' ----------TAGAAGGTGTTA 3' NPHP1 hsa-miR-2114star beg:289 end:311 pic:3' TTCAGG-GAACG-AACTCCGAGC 5'& |||. ||||| ||| ||| &5' --GTCTACTTGCATTGTT-CTC- 3' NPHP1 hsa-miR-30estar beg:192 end:211 pic:3' CGACATTTGTAGGCT-GACTTTC 5'& ||||| || |||||| &5' -----AAACAGA-GATCTGAAA- 3' NPHP1 hsa-miR-3118 beg:141 end:157 pic:3' TCTTAAAAGTATTACG-TCAGTGT 5'& |.||. |||||.| &5' -----------AGTGTAAGTCATA 3' NPHP1 hsa-miR-3119 beg:195 end:216 pic:3' CGGTAGTTTCAA---TTTTCGGT 5'& ||.|| ||||||.| &5' -----CAGAGATCTGAAAAGCTA 3' NPHP1 hsa-miR-3126-3p beg:109 end:125 pic:3' AGACACACTGCCTACGGTCTAC 5'& || || ||..|||| &5' -------GAAGG-TGTTAGAT- 3' NPHP1 hsa-miR-3132 beg:149 end:167 pic:3' AGGAGACTCGAGGA--AGAGATGGGT 5'& || |||||.||| &5' ----------TCATAGTCTCTGCCC- 3' NPHP1 hsa-miR-3136 beg:67 end:89 pic:3' TTACTGGGATGG--ATA--AGTCAGTC 5'& ||| || ||||||| &5' -------CTAACAATAGAATCAGTCA- 3' NPHP1 hsa-miR-3175 beg:298 end:314 pic:3' TGCAGTGACGCAAGAGAGGGGC 5'& ||.||. ||||||. &5' ----CATTGT----TCTCCCT- 3' NPHP1 hsa-miR-3184 beg:297 end:318 pic:3' TTTTCG-AGCCAGACTCCGGGGAGT 5'& || |.| ||| ||..||| &5' ----GCATTGTTCTC---CCTTTCA 3' NPHP1 hsa-miR-3190-3p beg:294 end:318 pic:3' GAGAGACCGGC-AGATGGAAGGT 5'& ||. ..| ||| ||||.|| &5' --CTTGCATTGTTCTCCCTTTCA 3' NPHP1 hsa-miR-3190-5p beg:297 end:320 pic:3' AGAGACCGG--C-AGATGGAAGGTGT 5'& || | ||| ||||.||.| &5' ------GCATTGTTCTCCCTTTCATA 3' NPHP1 hsa-miR-3202 beg:297 end:318 pic:3' TAATTTCG--AGAAGAGGGAAGGT 5'& || | |||||||||.|| &5' ------GCATTGTTCTCCCTTTCA 3' NPHP1 hsa-miR-320a beg:5 end:22 pic:3' AGCGGGAGAGTTGG--GTCGAAAA 5'& || ||| .|||||| &5' --------TC-ACCAATAGCTTT- 3' NPHP1 hsa-miR-320b beg:5 end:22 pic:3' AACGGGAGAGTTGG--GTCGAAAA 5'& || ||| .|||||| &5' --------TC-ACCAATAGCTTT- 3' NPHP1 hsa-miR-320c beg:5 end:22 pic:3' TGGGAGAGTTGG--GTCGAAAA 5'& || ||| .|||||| &5' ------TC-ACCAATAGCTTT- 3' NPHP1 hsa-miR-320d beg:5 end:22 pic:3' AGGAGAGTTGG--GTCGAAAA 5'& || ||| .|||||| &5' -----TC-ACCAATAGCTTT- 3' NPHP1 hsa-miR-340star beg:129 end:140 pic:3' CGATATTTCATTGACTCTGCCT 5'& ||||.||| &5' --------------GAGATGGA 3' NPHP1 hsa-miR-375 beg:208 end:226 pic:3' AGTGCGCTCGGCTTGCTTGTTT 5'& ||| ||.||||||| &5' -------AGCTAAATGAACAAA 3' NPHP1 hsa-miR-4290 beg:127 end:150 pic:3' CTCCCT-TCTTTCCTCCCGT 5'& ||| || .||||| || |.| &5' GAGAGATGGAAAGAAGTGTA 3' NPHP1 hsa-miR-4307 beg:129 end:145 pic:3' CCTTTGTCCTTTTTTGTAA 5'& ||.|. |||||.|| &5' -GAGAT-GGAAAGAA---- 3' NPHP1 hsa-miR-4325 beg:124 end:151 pic:3' AGTGA-CTCTG------TTCACGTT 5'& ||. ||||. |||||.|| &5' -CATGAGAGATGGAAAGAAGTGTAA 3' NPHP1 hsa-miR-486-3p beg:148 end:168 pic:3' TAGGA-CATGACTCGACGGGGC 5'& .|| || || ||||||. &5' GTCATAGT-CT---CTGCCCT- 3' NPHP1 hsa-miR-507 beg:253 end:275 pic:3' AAGTGA-GGTTTTCCACGTTTT 5'& ||| . | |||.|||| &5' -TCAATGTTGAT--GTGTAAAA 3' NPHP1 hsa-miR-514 beg:102 end:123 pic:3' AGATGAGTGTCTT-CACAGTTA 5'& ||. |.|||| ||||.|. &5' --TATA-ATAGAAGGTGTTAG- 3' NPHP1 hsa-miR-514b-3p beg:106 end:123 pic:3' AGGTGAGTGTC-TCCACAGTTA 5'& |.|| ||||||.|. &5' -------ATAGAAGGTGTTAG- 3' NPHP1 hsa-miR-544b beg:152 end:172 pic:3' AATCTTT-ACGTGTTGGAGTCCA 5'& ||| ||| ||||||| &5' -TAGTCTCTGC----CCTCAGG- 3' NPHP1 hsa-miR-571 beg:156 end:179 pic:3' GAGT---GAGTCTACCGGTTGAGT 5'& ||| |||||. |||.|.| &5' CTCTGCCCTCAGG----CAATTTA 3' NPHP1 hsa-miR-571 beg:14 end:35 pic:3' GAGTGAGTCTACCGGTTGAGT 5'& .||. ||| .|||||| &5' ---GCTTTAATGTTTAACTCA 3' NPHP1 hsa-miR-579 beg:209 end:222 pic:3' TTAGCGCCAAATATGGTTTACTT 5'& .|.||||||| &5' -------------GCTAAATGAA 3' NPHP1 hsa-miR-593 beg:186 end:205 pic:3' TCTTTGGGGTCGTCTCTGT 5'& ||||| ||||||. &5' -GAAACAAAA-CAGAGAT- 3' NPHP1 hsa-miR-625 beg:303 end:314 pic:3' CCTGATATCTTGAAAGGGGGA 5'& |||.|||| &5' -------------TTCTCCCT 3' NPHP1 hsa-miR-637 beg:150 end:171 pic:3' TGC-GTCTCGGGCTTTCGGGGGTCA 5'& | || ||.|. ||||.||| &5' --GTCATAGTCTCT--GCCCTCAG- 3' NPHP1 hsa-miR-876-5p beg:185 end:207 pic:3' ACCACTAAGTGTT---TCTTTAGGT 5'& | ||| |||| |||.|||. &5' -GTTGAA--ACAAAACAGAGATCT- 3' NPHP1 hsv1-miR-H1 beg:298 end:319 pic:3' AGGTG--AAGGGCAGGAAGGTAG 5'& ||. |||.| ||||.||| &5' --CATTGTTCTC--CCTTTCAT- 3' NPHP1 hsv1-miR-H4star beg:153 end:175 pic:3' TGATCGCTCAATCT-GTCCGTTC 5'& |||. ||||||| &5' --TAGTCTCTGCCCTCAGGCAA- 3' NPHP1 jcv-miR-J1-3p beg:156 end:174 pic:3' CTGAGACCTGTACCTAGTTCGT 5'& ||||| | |||.||| &5' --CTCTGCCC-----TCAGGCA 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-1184 chr2 110204923 C T gcggcGCTGCAatca CCUGCAGC m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-1199-3p chr2 110204923 C T gcggcGCCGCAatca UGCGGCCG m6a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-1301-3p chr2 110204923 C T gcggcGCTGCAAtca UUGCAGCU m7a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-1469 chr2 110204923 C T gcgGCGCCGcaatca CUCGGCGC m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-25-3p chr2 110204923 C T gcggcgcTGCAATca CAUUGCAC m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-32-5p chr2 110204923 C T gcggcgcTGCAATca UAUUGCAC m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-339-3p chr2 110204923 C T gcGGCGCTgcaatca UGAGCGCC m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-363-3p chr2 110204923 C T gcggcgcTGCAATca AAUUGCAC m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-367-3p chr2 110204923 C T gcggcgcTGCAATca AAUUGCAC m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-3944-5p chr2 110204923 C T gcggcGCTGCAatca UGUGCAGC m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-3960 chr2 110204923 C T gcggCGCCGCaatca GGCGGCGG m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-4285 chr2 110204923 C T gcggCGCCGCaatca GCGGCGAG m6a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-4467 chr2 110204923 C T gcggCGCCGCaatca UGGCGGCG m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-4634 chr2 110204923 C T gcgGCGCCGcaatca CGGCGCGA m6a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-4660 chr2 110204923 C T gcggcGCTGCAatca UGCAGCUC m6a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-4738-5p chr2 110204923 C T gcgGCGCTGcaatca ACCAGCGC m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-503-5p chr2 110204923 C T gcggCGCTGCaatca UAGCAGCG m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-5047 chr2 110204923 C T gcggcGCTGCAAtca UUGCAGCU m7a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-566 chr2 110204923 C T gcGGCGCCgcaatca GGGCGCCU m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-6516-5p chr2 110204923 C T gcggcgCTGCAAtca UUUGCAGU m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-6789-3p chr2 110204923 C T gcGGCGCCGcaatca CGGCGCCC m7a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-6820-5p chr2 110204923 C T gcggcGCCGCAatca UGCGGCAG m6a PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-7156-3p chr2 110204923 C T gcggcGCTGCAatca CUGCAGCC m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-8072 chr2 110204923 C T gcggCGCCGCaatca GGCGGCGG m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-885-3p chr2 110204923 C T gcggCGCTGCaatca AGGCAGCG m6c PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-92a-3p chr2 110204923 C T gcggcgcTGCAATca UAUUGCAC m6b PTC-77C [thyroid][NS][other][neoplasm] NPHP1 chr2:g.110204923C>T COSM4132986 hsa-miR-92b-3p chr2 110204923 C T gcggcgcTGCAATca UAUUGCAC m6b PTC-77C [thyroid][NS][other][neoplasm]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region NPHP1 High_conserved miR-130ac/301ab/301b/301b-3p/454/721/4295/3666 chr2:110879938 7-mer-m8 11 3pUTR NPHP1 High_conserved miR-132/212/212-3p chr2:110881157 7-mer-A1 22 3pUTR, ncRNA NPHP1 High_conserved miR-132/212/212-3p chr2:110882595 7-mer-m8 7 ncRNA NPHP1 High_conserved miR-7/7ab chr2:110902044 7-mer-m8 16 ncRNA NPHP1 High_conserved miR-7/7ab chr2:110917764 7-mer-A1 38 CDS, ncRNA NPHP1 High_conserved miR-7/7ab chr2:110920831 7-mer-A1 22 ncRNA NPHP1 High_conserved miR-133abc chr2:110882606 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-9/9ab chr2:110882131 7-mer-m8 13 ncRNA NPHP1 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr2:110921498 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-96/507/1271 chr2:110882379 7-mer-A1 18 ncRNA NPHP1 High_conserved miR-96/507/1271 chr2:110883914 7-mer-m8 16 ncRNA NPHP1 High_conserved miR-96/507/1271 chr2:110901730 7-mer-A1 16 ncRNA NPHP1 High_conserved miR-96/507/1271 chr2:110926065 7-mer-A1 27 CDS, ncRNA NPHP1 High_conserved miR-135ab/135a-5p chr2:110883117 7-mer-A1 20 3pUTR, ncRNA NPHP1 High_conserved miR-135ab/135a-5p chr2:110885157 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-137/137ab chr2:110901419 8-mer 13 ncRNA NPHP1 High_conserved miR-139-5p chr2:110880575 7-mer-m8 9 3pUTR NPHP1 High_conserved miR-139-5p chr2:110882331 7-mer-A1 22 ncRNA NPHP1 High_conserved miR-141/200a chr2:110880949 7-mer-A1 13 3pUTR, ncRNA NPHP1 High_conserved miR-141/200a chr2:110883613 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-141/200a chr2:110886357 7-mer-A1 0 ncRNA NPHP1 High_conserved miR-141/200a chr2:110901204 7-mer-m8 36 CDS, ncRNA NPHP1 High_conserved miR-142-3p chr2:110882660 7-mer-m8 9 ncRNA NPHP1 High_conserved miR-143/1721/4770 chr2:110879905 7-mer-A1 0 3pUTR NPHP1 High_conserved miR-143/1721/4770 chr2:110880716 7-mer-A1 0 3pUTR NPHP1 High_conserved miR-144 chr2:110880577 7-mer-A1 9 3pUTR NPHP1 High_conserved miR-144 chr2:110881158 7-mer-m8 31 3pUTR, ncRNA NPHP1 High_conserved miR-145 chr2:110962571 7-mer-m8 11 5pUTR, ncRNA NPHP1 High_conserved miR-146ac/146b-5p chr2:110884077 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-146ac/146b-5p chr2:110917742 7-mer-A1 27 CDS, ncRNA NPHP1 High_conserved miR-150/5127 chr2:110880008 7-mer-m8 13 3pUTR NPHP1 High_conserved miR-150/5127 chr2:110880132 7-mer-m8 11 3pUTR NPHP1 High_conserved miR-150/5127 chr2:110901660 7-mer-A1 13 ncRNA NPHP1 High_conserved miR-150/5127 chr2:110921492 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-153 chr2:110882069 7-mer-m8 7 ncRNA NPHP1 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr2:110884841 7-mer-m8 4 ncRNA NPHP1 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr2:110881271 7-mer-A1 13 3pUTR, ncRNA NPHP1 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr2:110881680 7-mer-A1 13 ncRNA NPHP1 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr2:110921497 7-mer-m8 9 ncRNA NPHP1 High_conserved miR-181abcd/4262 chr2:110880860 7-mer-m8 29 3pUTR NPHP1 High_conserved miR-181abcd/4262 chr2:110922142 7-mer-A1 20 CDS, ncRNA NPHP1 High_conserved miR-182 chr2:110882379 8-mer 18 ncRNA NPHP1 High_conserved miR-182 chr2:110901730 7-mer-A1 16 ncRNA NPHP1 High_conserved miR-182 chr2:110921038 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-182 chr2:110926065 7-mer-A1 27 CDS, ncRNA NPHP1 High_conserved miR-183 chr2:110879944 7-mer-m8 0 3pUTR NPHP1 High_conserved miR-183 chr2:110881792 7-mer-m8 7 ncRNA NPHP1 High_conserved miR-183 chr2:110883990 8-mer 18 ncRNA NPHP1 High_conserved miR-183 chr2:110884355 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-183 chr2:110886211 7-mer-m8 13 ncRNA NPHP1 High_conserved let-7/98/4458/4500 chr2:110881724 7-mer-m8 9 ncRNA NPHP1 High_conserved miR-18ab/4735-3p chr2:110885395 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-190/190ab chr2:110936392 7-mer-m8 11 3pUTR NPHP1 High_conserved miR-196abc chr2:110922220 7-mer-A1 0 CDS, ncRNA NPHP1 High_conserved miR-196abc chr2:110926032 7-mer-A1 13 CDS, ncRNA NPHP1 High_conserved miR-199ab-5p chr2:110880757 7-mer-A1 16 3pUTR NPHP1 High_conserved miR-199ab-5p chr2:110881954 7-mer-m8 13 ncRNA NPHP1 High_conserved miR-199ab-5p chr2:110921888 7-mer-m8 4 ncRNA NPHP1 High_conserved miR-199ab-5p chr2:110922291 7-mer-A1 38 CDS, ncRNA NPHP1 High_conserved miR-19ab chr2:110884320 7-mer-m8 13 ncRNA NPHP1 High_conserved miR-1ab/206/613 chr2:110883059 8-mer 24 3pUTR, ncRNA NPHP1 High_conserved miR-1ab/206/613 chr2:110884088 8-mer 20 ncRNA NPHP1 High_conserved miR-200bc/429/548a chr2:110881135 7-mer-m8 7 3pUTR, ncRNA NPHP1 High_conserved miR-200bc/429/548a chr2:110920768 7-mer-A1 2 ncRNA NPHP1 High_conserved miR-203 chr2:110882995 7-mer-m8 31 3pUTR, ncRNA NPHP1 High_conserved miR-204/204b/211 chr2:110882869 7-mer-A1 0 CDS, ncRNA NPHP1 High_conserved miR-204/204b/211 chr2:110919271 7-mer-A1 47 CDS, ncRNA NPHP1 High_conserved miR-204/204b/211 chr2:110935684 8-mer 11 3pUTR NPHP1 High_conserved miR-205/205ab chr2:110880185 7-mer-m8 0 3pUTR NPHP1 High_conserved miR-205/205ab chr2:110926053 7-mer-m8 18 CDS, ncRNA NPHP1 High_conserved miR-208ab/208ab-3p chr2:110883798 7-mer-A1 13 ncRNA NPHP1 High_conserved miR-208ab/208ab-3p chr2:110921628 7-mer-A1 0 ncRNA NPHP1 High_conserved miR-214/761/3619-5p chr2:110883959 8-mer 7 ncRNA NPHP1 High_conserved miR-214/761/3619-5p chr2:110884047 8-mer 7 ncRNA NPHP1 High_conserved miR-214/761/3619-5p chr2:110885802 8-mer 16 ncRNA NPHP1 High_conserved miR-214/761/3619-5p chr2:110886079 8-mer 18 ncRNA NPHP1 High_conserved miR-214/761/3619-5p chr2:110886729 7-mer-m8 18 ncRNA NPHP1 High_conserved miR-214/761/3619-5p chr2:110901533 7-mer-A1 4 ncRNA NPHP1 High_conserved miR-216a chr2:110882226 7-mer-m8 16 ncRNA NPHP1 High_conserved miR-217 chr2:110881371 7-mer-m8 13 CDS, ncRNA NPHP1 High_conserved miR-217 chr2:110883173 7-mer-A1 9 3pUTR, ncRNA NPHP1 High_conserved miR-217 chr2:110901472 7-mer-m8 16 ncRNA NPHP1 High_conserved miR-218/218a chr2:110880779 8-mer 0 3pUTR NPHP1 High_conserved miR-218/218a chr2:110883231 7-mer-m8 20 CDS, ncRNA NPHP1 High_conserved miR-218/218a chr2:110901214 7-mer-m8 47 ncRNA NPHP1 High_conserved miR-223 chr2:110883895 7-mer-A1 7 ncRNA NPHP1 High_conserved miR-122/122a/1352 chr2:110879936 7-mer-A1 11 3pUTR NPHP1 High_conserved miR-122/122a/1352 chr2:110881568 7-mer-A1 24 CDS, ncRNA NPHP1 High_conserved miR-122/122a/1352 chr2:110921661 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-23abc/23b-3p chr2:110880393 7-mer-A1 16 3pUTR NPHP1 High_conserved miR-23abc/23b-3p chr2:110880858 7-mer-m8 22 3pUTR NPHP1 High_conserved miR-23abc/23b-3p chr2:110882600 7-mer-m8 13 ncRNA NPHP1 High_conserved miR-23abc/23b-3p chr2:110883026 7-mer-m8 29 3pUTR, ncRNA NPHP1 High_conserved miR-24/24ab/24-3p chr2:110879957 7-mer-A1 9 3pUTR NPHP1 High_conserved miR-24/24ab/24-3p chr2:110885159 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-25/32/92abc/363/363-3p/367 chr2:110881931 7-mer-A1 4 ncRNA NPHP1 High_conserved miR-25/32/92abc/363/363-3p/367 chr2:110883411 7-mer-A1 13 ncRNA NPHP1 High_conserved miR-26ab/1297/4465 chr2:110880864 8-mer 13 3pUTR NPHP1 High_conserved miR-26ab/1297/4465 chr2:110901969 8-mer 9 ncRNA NPHP1 High_conserved miR-26ab/1297/4465 chr2:110920957 8-mer 18 ncRNA NPHP1 High_conserved miR-27abc/27a-3p chr2:110882157 7-mer-A1 0 ncRNA NPHP1 High_conserved miR-27abc/27a-3p chr2:110883733 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-27abc/27a-3p chr2:110885116 7-mer-A1 16 ncRNA NPHP1 High_conserved miR-27abc/27a-3p chr2:110921017 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-101/101ab chr2:110880561 7-mer-m8 9 3pUTR NPHP1 High_conserved miR-101/101ab chr2:110880577 7-mer-A1 9 3pUTR NPHP1 High_conserved miR-29abcd chr2:110883425 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-31 chr2:110901332 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-103a/107/107ab chr2:110880317 7-mer-m8 18 3pUTR NPHP1 High_conserved miR-103a/107/107ab chr2:110882174 8-mer 0 ncRNA NPHP1 High_conserved miR-103a/107/107ab chr2:110884842 7-mer-m8 4 ncRNA NPHP1 High_conserved miR-124/124ab/506 chr2:110880314 7-mer-A1 22 3pUTR NPHP1 High_conserved miR-124/124ab/506 chr2:110880424 7-mer-A1 7 3pUTR NPHP1 High_conserved miR-338/338-3p chr2:110882099 7-mer-A1 20 ncRNA NPHP1 High_conserved miR-338/338-3p chr2:110886812 7-mer-m8 24 CDS, ncRNA NPHP1 High_conserved miR-338/338-3p chr2:110962538 7-mer-m8 31 CDS, ncRNA NPHP1 High_conserved miR-33ab/33-5p chr2:110882826 7-mer-m8 13 CDS, ncRNA NPHP1 High_conserved miR-33ab/33-5p chr2:110884027 7-mer-m8 11 ncRNA NPHP1 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr2:110882372 7-mer-A1 2 ncRNA NPHP1 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr2:110884706 7-mer-m8 13 ncRNA NPHP1 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr2:110889359 7-mer-A1 13 CDS, ncRNA NPHP1 High_conserved miR-375 chr2:110935738 7-mer-A1 9 3pUTR NPHP1 High_conserved miR-425/425-5p/489 chr2:110880282 7-mer-A1 11 3pUTR NPHP1 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr2:110881849 8-mer 22 ncRNA NPHP1 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr2:110886761 7-mer-m8 64 ncRNA NPHP1 High_conserved miR-10abc/10a-5p chr2:110922158 7-mer-m8 20 CDS, ncRNA NPHP1 High_conserved miR-455-5p chr2:110885191 7-mer-A1 9 ncRNA NPHP1 High_conserved miR-128/128ab chr2:110885443 7-mer-m8 20 ncRNA NPHP1 High_conserved miR-128/128ab chr2:110901674 7-mer-m8 22 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110879900 7-mer-A1 0 3pUTR NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110883067 7-mer-m8 13 3pUTR, ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110884338 7-mer-m8 9 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110885174 7-mer-m8 9 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110886470 7-mer-m8 31 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110902144 7-mer-m8 40 CDS, ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110921074 7-mer-A1 9 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110921243 7-mer-A1 4 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110921250 7-mer-A1 7 ncRNA NPHP1 High_conserved miR-129-5p/129ab-5p chr2:110921790 7-mer-A1 11 ncRNA NPHP1 High_conserved miR-490-3p chr2:110883935 7-mer-A1 16 ncRNA NPHP1 High_conserved miR-490-3p chr2:110905600 8-mer 38 CDS, ncRNA NPHP1 High_conserved miR-499-5p chr2:110883798 8-mer 13 ncRNA NPHP1 High_conserved miR-499-5p chr2:110921628 7-mer-A1 0 ncRNA NPHP1 Medium_conserved miR-504/4725-5p chr2:110886271 8-mer 22 ncRNA NPHP1 Medium_conserved miR-539/539-5p chr2:110880607 8-mer 13 3pUTR NPHP1 Medium_conserved miR-539/539-5p chr2:110885563 7-mer-m8 27 ncRNA NPHP1 Medium_conserved miR-539/539-5p chr2:110922084 8-mer 33 ncRNA NPHP1 Medium_conserved miR-542-3p chr2:110881274 7-mer-m8 29 3pUTR, ncRNA NPHP1 Medium_conserved miR-542-3p chr2:110881447 7-mer-m8 31 CDS, ncRNA NPHP1 Medium_conserved miR-542-3p chr2:110882665 8-mer 24 ncRNA NPHP1 Medium_conserved miR-543 chr2:110881665 7-mer-A1 4 ncRNA NPHP1 Medium_conserved miR-543 chr2:110935733 7-mer-A1 22 3pUTR NPHP1 Medium_conserved miR-544/544ab/544-3p chr2:110882066 7-mer-m8 27 ncRNA NPHP1 Medium_conserved miR-544/544ab/544-3p chr2:110884744 7-mer-m8 9 ncRNA NPHP1 Medium_conserved miR-544/544ab/544-3p chr2:110885569 7-mer-m8 27 ncRNA NPHP1 Medium_conserved miR-544/544ab/544-3p chr2:110885768 7-mer-A1 20 ncRNA NPHP1 Medium_conserved miR-544/544ab/544-3p chr2:110920754 8-mer 4 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110880053 7-mer-A1 11 3pUTR NPHP1 Medium_conserved miR-590-3p chr2:110880940 7-mer-m8 24 3pUTR, ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110881941 7-mer-A1 11 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110882457 7-mer-A1 9 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110884305 7-mer-m8 18 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110921402 7-mer-A1 11 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110921556 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110921778 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-590-3p chr2:110937207 7-mer-A1 58 3pUTR, CDS, ncRNA NPHP1 Medium_conserved miR-592/599 chr2:110880057 7-mer-A1 11 3pUTR NPHP1 Medium_conserved miR-592/599 chr2:110882637 7-mer-A1 18 ncRNA NPHP1 Medium_conserved miR-653 chr2:110885487 8-mer 13 ncRNA NPHP1 Medium_conserved miR-653 chr2:110885656 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-758 chr2:110883698 7-mer-A1 0 ncRNA NPHP1 Medium_conserved miR-758 chr2:110927455 7-mer-A1 13 CDS, ncRNA NPHP1 Medium_conserved miR-134/3118 chr2:110884647 8-mer 22 ncRNA NPHP1 Medium_conserved miR-134/3118 chr2:110884831 7-mer-m8 16 ncRNA NPHP1 Medium_conserved miR-873 chr2:110881622 8-mer 47 CDS, ncRNA NPHP1 Medium_conserved miR-873 chr2:110921161 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-874 chr2:110886416 7-mer-m8 16 ncRNA NPHP1 Medium_conserved miR-874 chr2:110921641 8-mer 7 ncRNA NPHP1 Medium_conserved miR-874 chr2:110922150 7-mer-m8 18 CDS, ncRNA NPHP1 Medium_conserved miR-875-5p chr2:110884619 8-mer 7 ncRNA NPHP1 Medium_conserved miR-875-5p chr2:110885083 7-mer-m8 13 ncRNA NPHP1 Medium_conserved miR-875-5p chr2:110886200 8-mer 13 ncRNA NPHP1 Medium_conserved miR-875-5p chr2:110902065 7-mer-m8 27 ncRNA NPHP1 Medium_conserved miR-876-5p/3167 chr2:110886467 7-mer-A1 27 ncRNA NPHP1 Medium_conserved miR-876-5p/3167 chr2:110920734 7-mer-A1 11 ncRNA NPHP1 Medium_conserved miR-876-5p/3167 chr2:110921068 7-mer-A1 9 ncRNA NPHP1 Medium_conserved miR-136 chr2:110884010 7-mer-A1 22 ncRNA NPHP1 Medium_conserved miR-136 chr2:110884730 8-mer 13 ncRNA NPHP1 Medium_conserved miR-136 chr2:110922192 7-mer-A1 20 CDS, ncRNA NPHP1 Medium_conserved miR-154/872 chr2:110880231 7-mer-A1 13 3pUTR NPHP1 Medium_conserved miR-154/872 chr2:110880365 7-mer-A1 22 3pUTR NPHP1 Medium_conserved miR-185/882/3473/4306/4644 chr2:110884950 7-mer-m8 13 ncRNA NPHP1 Medium_conserved miR-185/882/3473/4306/4644 chr2:110962514 7-mer-A1 11 CDS, ncRNA NPHP1 Medium_conserved miR-186 chr2:110885879 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-186 chr2:110935633 8-mer 27 3pUTR NPHP1 Medium_conserved miR-197 chr2:110885077 7-mer-A1 7 ncRNA NPHP1 Medium_conserved miR-197 chr2:110904401 7-mer-A1 36 CDS, ncRNA NPHP1 Medium_conserved miR-197 chr2:110936484 8-mer 16 3pUTR NPHP1 Medium_conserved miR-224 chr2:110882385 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-224 chr2:110885307 7-mer-m8 0 ncRNA NPHP1 Medium_conserved miR-224 chr2:110886504 7-mer-A1 18 ncRNA NPHP1 Medium_conserved miR-28-5p/708/1407/1653/3139 chr2:110921363 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr2:110880094 8-mer 7 3pUTR NPHP1 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr2:110880898 7-mer-A1 29 3pUTR NPHP1 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr2:110886025 7-mer-m8 2 ncRNA NPHP1 Medium_conserved miR-296-3p chr2:110882464 7-mer-A1 20 ncRNA NPHP1 Medium_conserved miR-300/381/539-3p chr2:110883376 8-mer 4 ncRNA NPHP1 Medium_conserved miR-300/381/539-3p chr2:110883544 7-mer-A1 11 ncRNA NPHP1 Medium_conserved miR-300/381/539-3p chr2:110921120 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-320abcd/4429 chr2:110935941 7-mer-A1 16 3pUTR NPHP1 Medium_conserved miR-324-5p chr2:110901475 8-mer 20 ncRNA NPHP1 Medium_conserved miR-324-5p chr2:110901760 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-324-5p chr2:110919192 7-mer-m8 44 CDS, ncRNA NPHP1 Medium_conserved miR-326/330/330-5p chr2:110881638 8-mer 44 ncRNA NPHP1 Medium_conserved miR-326/330/330-5p chr2:110885089 7-mer-A1 9 ncRNA NPHP1 Medium_conserved miR-328a/328b-3p chr2:110886098 8-mer 16 ncRNA NPHP1 Medium_conserved miR-328a/328b-3p chr2:110920848 7-mer-A1 4 ncRNA NPHP1 Medium_conserved miR-329/329ab/362-3p chr2:110885413 8-mer 20 ncRNA NPHP1 Medium_conserved miR-329/329ab/362-3p chr2:110921089 7-mer-A1 7 ncRNA NPHP1 Medium_conserved miR-329/329ab/362-3p chr2:110921106 7-mer-m8 9 ncRNA NPHP1 Medium_conserved miR-335/335-5p chr2:110886792 7-mer-m8 31 CDS, ncRNA NPHP1 Medium_conserved miR-339b/339-5p/3586-5p chr2:110921643 7-mer-m8 7 ncRNA NPHP1 Medium_conserved miR-340-5p chr2:110881169 7-mer-A1 27 3pUTR, ncRNA NPHP1 Medium_conserved miR-340-5p chr2:110883484 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-340-5p chr2:110935782 7-mer-A1 22 3pUTR NPHP1 Medium_conserved miR-342-3p chr2:110881911 8-mer 20 ncRNA NPHP1 Medium_conserved miR-342-3p chr2:110883025 7-mer-A1 13 3pUTR, ncRNA NPHP1 Medium_conserved miR-342-3p chr2:110921113 7-mer-m8 9 ncRNA NPHP1 Medium_conserved miR-346 chr2:110885330 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-346 chr2:110901756 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-346 chr2:110917735 7-mer-A1 60 CDS, ncRNA NPHP1 Medium_conserved miR-361-5p chr2:110880869 7-mer-m8 16 3pUTR NPHP1 Medium_conserved miR-361-5p chr2:110880987 7-mer-A1 31 3pUTR, ncRNA NPHP1 Medium_conserved miR-361-5p chr2:110882021 7-mer-m8 20 ncRNA NPHP1 Medium_conserved miR-361-5p chr2:110885799 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-370 chr2:110920993 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-370 chr2:110921857 7-mer-A1 9 ncRNA NPHP1 Medium_conserved miR-374ab chr2:110901273 7-mer-m8 20 ncRNA NPHP1 Medium_conserved miR-374ab chr2:110920765 7-mer-m8 18 ncRNA NPHP1 Medium_conserved miR-376abd/376b-3p chr2:110921098 7-mer-m8 9 ncRNA NPHP1 Medium_conserved miR-376c/741-5p chr2:110885462 7-mer-A1 11 ncRNA NPHP1 Medium_conserved miR-376c/741-5p chr2:110886541 7-mer-A1 9 ncRNA NPHP1 Medium_conserved miR-377 chr2:110881912 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-377 chr2:110921114 7-mer-m8 13 ncRNA NPHP1 Medium_conserved miR-378/422a/378bcdefhi chr2:110885997 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-379/1193-5p/3529 chr2:110901197 7-mer-A1 13 CDS, ncRNA NPHP1 Medium_conserved miR-382 chr2:110881264 8-mer 11 3pUTR, ncRNA NPHP1 Medium_conserved miR-384/384-3p chr2:110882452 7-mer-A1 7 ncRNA NPHP1 Medium_conserved miR-410/344de/344b-1-3p chr2:110881153 7-mer-m8 22 3pUTR, ncRNA NPHP1 Medium_conserved miR-410/344de/344b-1-3p chr2:110881973 7-mer-m8 16 ncRNA NPHP1 Medium_conserved miR-410/344de/344b-1-3p chr2:110885128 7-mer-A1 16 ncRNA NPHP1 Medium_conserved miR-411 chr2:110889362 7-mer-m8 27 CDS, ncRNA NPHP1 Medium_conserved miR-411 chr2:110935664 7-mer-m8 16 3pUTR NPHP1 Medium_conserved miR-421 chr2:110886362 7-mer-m8 4 ncRNA NPHP1 Medium_conserved miR-421 chr2:110920695 7-mer-m8 24 CDS, ncRNA NPHP1 Medium_conserved miR-125a-3p/1554 chr2:110880110 8-mer 13 3pUTR NPHP1 Medium_conserved miR-125a-3p/1554 chr2:110885777 7-mer-A1 4 ncRNA NPHP1 Medium_conserved miR-125a-3p/1554 chr2:110921470 7-mer-m8 13 ncRNA NPHP1 Medium_conserved miR-125a-3p/1554 chr2:110960046 7-mer-A1 18 CDS NPHP1 Medium_conserved miR-431 chr2:110883005 7-mer-A1 7 3pUTR, ncRNA NPHP1 Medium_conserved miR-431 chr2:110901548 7-mer-A1 2 ncRNA NPHP1 Medium_conserved miR-431 chr2:110901645 8-mer 16 ncRNA NPHP1 Medium_conserved miR-431 chr2:110921637 7-mer-m8 13 ncRNA NPHP1 Medium_conserved miR-433 chr2:110881431 7-mer-A1 20 CDS, ncRNA NPHP1 Medium_conserved miR-433 chr2:110881639 7-mer-m8 11 CDS NPHP1 Medium_conserved miR-433 chr2:110883652 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-433 chr2:110901291 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-433 chr2:110901855 8-mer 18 ncRNA NPHP1 Medium_conserved miR-433 chr2:110901870 8-mer 11 ncRNA NPHP1 Medium_conserved miR-448/448-3p chr2:110885781 7-mer-m8 4 ncRNA NPHP1 Medium_conserved miR-448/448-3p chr2:110901736 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-485-5p/1698/1703/1962 chr2:110881354 7-mer-m8 11 3pUTR, ncRNA NPHP1 Medium_conserved miR-485-5p/1698/1703/1962 chr2:110882419 7-mer-m8 11 ncRNA NPHP1 Medium_conserved miR-485-5p/1698/1703/1962 chr2:110901170 8-mer 60 CDS, ncRNA NPHP1 Medium_conserved miR-486-5p/3107 chr2:110884818 7-mer-m8 9 ncRNA NPHP1 Medium_conserved miR-488 chr2:110880732 7-mer-m8 20 3pUTR NPHP1 Medium_conserved miR-488 chr2:110881415 7-mer-m8 27 CDS, ncRNA NPHP1 Medium_conserved miR-488 chr2:110901327 7-mer-m8 29 ncRNA NPHP1 Medium_conserved miR-488 chr2:110935645 7-mer-m8 27 3pUTR NPHP1 Medium_conserved miR-491-5p chr2:110901526 7-mer-A1 20 ncRNA NPHP1 Medium_conserved miR-491-5p chr2:110922294 7-mer-m8 0 CDS, ncRNA NPHP1 Medium_conserved miR-494 chr2:110883083 7-mer-A1 11 3pUTR, ncRNA NPHP1 Medium_conserved miR-494 chr2:110886143 7-mer-A1 16 ncRNA NPHP1 Medium_conserved miR-495/1192 chr2:110886668 7-mer-A1 11 ncRNA NPHP1 Medium_conserved miR-496 chr2:110884406 7-mer-A1 7 ncRNA NPHP1 Medium_conserved miR-496 chr2:110901270 7-mer-A1 13 ncRNA NPHP1 Medium_conserved miR-496 chr2:110921296 7-mer-m8 2 ncRNA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score NPHP1 RAID00080072 hsa-miR-372-5p miRNA MIMAT0026484 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID00258726 hsa-miR-410-3p miRNA MIMAT0002171 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00260558 ebv-miR-BART19-3p miRNA MIMAT0003718 NPHP1 mRNA 4867 PAR-CLIP 0.5483 NPHP1 RAID00326162 hsa-miR-30b-5p miRNA MIMAT0000420 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00345500 hsa-miR-590-3p miRNA MIMAT0004801 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00606181 hsa-miR-485-5p miRNA MIMAT0002175 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00713646 hsa-miR-7107-3p miRNA MIMAT0028112 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00717582 hsa-miR-6778-3p miRNA MIMAT0027457 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID00832644 hsa-miR-218-1-3p miRNA MIMAT0004565 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00833321 hsa-miR-6843-3p miRNA MIMAT0027588 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID00854004 hsa-miR-30d-5p miRNA MIMAT0000245 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00856655 hsa-miR-340-5p miRNA MIMAT0004692 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00856665 hsa-miR-4282 miRNA MIMAT0016912 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00936465 hsa-miR-374a-3p miRNA MIMAT0004688 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID00980688 hsa-miR-6759-3p miRNA MIMAT0027419 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01050053 hsa-miR-200c-3p miRNA MIMAT0000617 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01112636 hsa-miR-892c-3p miRNA MIMAT0025858 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01204825 hsa-miR-371b-5p miRNA MIMAT0019892 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID01296210 hsa-miR-616-5p miRNA MIMAT0003284 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID01440054 hsa-miR-877-3p miRNA MIMAT0004950 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01547015 hsa-miR-200b-3p miRNA MIMAT0000318 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01581471 hsa-miR-30c-5p miRNA MIMAT0000244 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01655841 hsa-miR-371a-5p miRNA MIMAT0004687 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID01658199 hsa-miR-4676-3p miRNA MIMAT0019759 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01667180 hsa-miR-764 miRNA MIMAT0010367 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID01688593 hsa-miR-361-5p miRNA MIMAT0000703 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01825704 hsa-miR-182-5p miRNA MIMAT0000259 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01870906 hsa-miR-129-5p miRNA MIMAT0000242 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID01888515 hsa-miR-1224-3p miRNA MIMAT0005459 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID01907239 hsa-miR-6512-5p miRNA MIMAT0025480 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02049972 hsa-miR-568 miRNA MIMAT0003232 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02196682 hsa-miR-3653-5p miRNA MIMAT0032110 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID02215369 hsa-miR-452-5p miRNA MIMAT0001635 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02238619 hsa-miR-6790-3p miRNA MIMAT0027481 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID02253468 hsa-miR-450b-5p miRNA MIMAT0004909 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02299677 hsa-miR-542-3p miRNA MIMAT0003389 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02311120 hsa-miR-494-3p miRNA MIMAT0002816 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02340230 hsa-miR-19b-3p miRNA MIMAT0000074 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02380739 hsa-miR-496 miRNA MIMAT0002818 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02402563 hsa-miR-30a-5p miRNA MIMAT0000087 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02475559 hsa-miR-431-5p miRNA MIMAT0001625 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02532300 hsa-miR-382-5p miRNA MIMAT0000737 NPHP1 mRNA 4867 Prediction 0.2202 NPHP1 RAID02600794 hsa-miR-3663-5p miRNA MIMAT0018084 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID02647190 hsa-miR-132-3p miRNA MIMAT0000426 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02703250 hsa-miR-373-5p miRNA MIMAT0000725 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID02718267 hsa-miR-223-3p miRNA MIMAT0000280 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02726183 hsa-miR-520e miRNA MIMAT0002825 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02744873 hsa-miR-584-5p miRNA MIMAT0003249 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID02835677 hsa-miR-6131 miRNA MIMAT0024615 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID02882710 hsa-miR-3934-5p miRNA MIMAT0018349 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID02944201 hsa-miR-128-3p miRNA MIMAT0000424 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03053305 hsa-miR-200a-3p miRNA MIMAT0000682 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03068900 hsa-miR-19a-3p miRNA MIMAT0000073 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03080829 hsa-miR-194-5p miRNA MIMAT0000460 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03115907 hsa-miR-144-3p miRNA MIMAT0000436 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03116683 hsa-miR-6848-3p miRNA MIMAT0027597 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03187770 hsa-miR-32-3p miRNA MIMAT0004505 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03192031 hsa-miR-543 miRNA MIMAT0004954 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03217847 hsa-miR-429 miRNA MIMAT0001536 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03323574 hsa-miR-378a-5p miRNA MIMAT0000731 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03340326 hsa-miR-212-3p miRNA MIMAT0000269 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03378357 hsa-miR-335-3p miRNA MIMAT0004703 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03380935 hsa-miR-150-5p miRNA MIMAT0000451 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03392638 hsa-miR-186-5p miRNA MIMAT0000456 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03419389 hsa-miR-640 miRNA MIMAT0003310 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03475533 hsa-miR-125a-3p miRNA MIMAT0004602 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03491083 hsa-miR-141-3p miRNA MIMAT0000432 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03536541 hsa-miR-520c-3p miRNA MIMAT0002846 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03634666 hsa-miR-4721 miRNA MIMAT0019835 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03653056 hsa-miR-7107-5p miRNA MIMAT0028111 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03653638 hsa-miR-30e-5p miRNA MIMAT0000692 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03740106 hsa-miR-491-5p miRNA MIMAT0002807 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03822796 hsa-miR-6753-3p miRNA MIMAT0027407 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03841694 hsa-miR-373-3p miRNA MIMAT0000726 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03857274 hsa-miR-143-3p miRNA MIMAT0000435 NPHP1 mRNA 4867 Prediction 0.1828 NPHP1 RAID03863651 hsa-miR-1234-3p miRNA MIMAT0005589 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID03969101 hsa-miR-6821-3p miRNA MIMAT0027543 NPHP1 mRNA 4867 CLIP-seq 0.5483 NPHP1 RAID04052620 hsa-miR-101-3p miRNA MIMAT0000099 NPHP1 mRNA 4867 Prediction 0.1828