iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
MTA1	NACC2	22926524	biogrid	exp	G	GP	G	G	GP	GP	G		G	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	G	GP	G	GP	G	GP	GP	G
CHD4	NACC2	22926524	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
MTA2	NACC2	22926524	biogrid	exp	P	P			P	P			P	P		P		P	P		GP	P		P		P	P	P		P		P	P
RBBP4	NACC2	22926524	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
HDAC1	NACC2	22926524	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
EPS8	NACC2	21988832	biogrid,intact	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
HDAC2	NACC2	22926524	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
NACC2	MTA3	22926524	biogrid	exp	GP	GP	G		P	GP	G		G	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
RBBP7	NACC2	22926524	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
NACC2	FOXP3	25609649	intact	exp		G					G		G					P	P							G		G	G				P
NACC2	NACC2	22926524	biogrid	exp	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
NACC2	NACC1	25402006, 23023127		ortho, pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	G	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
SOCS3	NACC2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	G	G	GP	GP	G	GP	G	GP	G	GP	G	GP	G	GP	GP	G
ATP1A2	NACC2	25402006		pred	G	G	G			GP	G		GP	GP	G	G		GP	G	G	G	GP	G	P	G		G	GP	G	G		GP	GP	G
ZBTB14	NACC2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	P	G	GP	GP	GP	G	GP	G	GP	P
BCL6	NACC2	23023127		pred	G	G	G	G	GP	G	G		G	G	G	G	G	G	GP	G	G	G	G	G	G	GP	G	G	G	G	G	G	G	G
NACC2	ZBTB32	23023127		pred		P				P			P	P		P						P		P		P							GP
ZBTB16	NACC2	23023127		pred	G	GP	G	G	G	GP	G		G	GP	G	G	G	GP	G	G	GP	GP	G	GP	G	G	GP	GP	G	GP	G	G	GP	G
ZBTB25	NACC2	23023127		pred	GP			G	G	P	G			P		P			G		P	P		G	G	GP	G			P	G	P	GP	G
PRNP	NACC2	25402006		pred	G	GP	G	G	G	GP	G		G	GP	G	G	G	GP	G	G	G	GP	G	GP	G	G	GP	GP	G	G	G	G	GP	G
BTBD17	NACC2	23023127		pred						P						P		P				P										P
NBR1	NACC2	23023127		pred	GP	GP	G	G	G	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
NACC2	KBTBD4	23023127		pred	GP	GP				GP			G	P	G	GP		P		G	GP	GP	G	GP	G	P	GP	GP	G	GP	G	P	GP
NACC2	ZBTB45	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
SKP2	NACC2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	G	G	GP	GP	G	GP	GP	G	GP	G	GP	G	G	G	GP	G	GP	GP	G
ZBTB7A	NACC2	23023127		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
MECP2	NACC2	25402006		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G
VHL	NACC2	23023127		pred	G	G	G	G	G	G	G		G	G	G	GP	G	GP	G	G	G	G	G	P	G	G	GP	GP	G	G	G	G	GP	G
TCEB2	NACC2	23023127		pred	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
ZCCHC24	NACC2	25402006		pred	GP	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	GP	G	GP	GP	G	GP	G	GP	GP	GP	G	GP	G	GP	GP	G

PPI - iRefIndex
UniProt A	UniProt B	Method	PMID	Interaction Type	Edge type	Num Participants
Q96BF6	Q12929	two hybrid	21988832	direct interaction	X	2
Q96BF6	Q13547	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	A0A024R534	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q16576	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q13547	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	A0A024R534	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q16576	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	A0A024R534	pull down	22926524	direct interaction	X	2
Q96BF6	P0CG48	affinity chromatography technology	21906983	physical association	X	2
Q96BF6	Q96BF6	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q92769	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q13330	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q09028-4	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q14839	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q92769	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q13330	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q09028-4	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q14839	affinity chromatography technology	22926524	physical association	X	2
Q96BF6	Q92769	pull down	22926524	direct interaction	X	2
Q96BF6	Q13330	pull down	22926524	direct interaction	X	2
Q96BF6	Q9BTC8-2	pull down	22926524	direct interaction	X	2
Q96BF6	Q14839	imaging technique	22926524	colocalization	X	2

PPI - HINT
Gene A	Gene B	PMID	Method	Quality
NACC2	FOXP3	25609649,25609649	0676,0004	HT
NACC2	FOXP3	25609649,25609649	0676,0004	HT
EPS8	NACC2	21988832	0018	HT

PPI - Mentha
Protein A	Protein B	Gene A	Gene B	Score	PMID
Q96BF6	O94776	NACC2	MTA2	0.569	22926524
Q9BZS1	Q96BF6	FOXP3	NACC2	0.236	25609649
Q96BF6	Q09028	NACC2	RBBP4	0.376	22926524
Q96BF6	Q12929	NACC2	EPS8	0.332	21988832
Q96BF6	Q13547	NACC2	HDAC1	0.376	22926524
Q96BF6	Q16576	NACC2	RBBP7	0.376	22926524
Q96BF6	Q96BF6	NACC2	NACC2	0.236	22926524
Q9BTC8	Q96BF6	MTA3	NACC2	0.309	22926524
Q96BF6	Q92769	NACC2	HDAC2	0.569	22926524
Q96BF6	Q14839	NACC2	CHD4	0.454	22926524
Q96BF6	Q13330	NACC2	MTA1	0.569	22926524

PPI - InWeb_IM
Gene A	Gene B	MI 1	Interaction 1	MI 2	Interaction 2
MTA2	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
UBC	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
RBBP4	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
EPS8	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
MTA1	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
HDAC1	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
CHD4	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
RBBP7	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
HDAC2	NACC2	MI:0045	experimental interaction detection	MI:0461	interaction database
NACC2	NACC1	MI:0362	inference	MI:0461	interaction database
NACC2	MTA3	MI:0045	experimental interaction detection	MI:0461	interaction database
NACC2	FOXP3	MI:0045	experimental interaction detection	MI:0461	interaction database