DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIM48 3'UTR 83a0d3c582 BA113700 NM_024114 chr11:54793372-54795171:+ TRIM48 5'UTR 83a0d3c582 CA178514 NM_024114 chr11:54786234-54794574:+

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence TRIM48; RNF101 ATTTA 135-761 1401-1405

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000071 hsa-miR-17* 79097 TRIM48 gauguucacgGAAGUGACGUCa :| |||||||| accuccccaaUUACACUGCAGu 2 13 322 343 [hg19:11:55038233-55038254:+] 0.5538 148 7 -16.69 -0.6469 MIMAT0004496 hsa-miR-23a* 79097 TRIM48 uuuaGGGUAGGGG---UCCUUGGGg ::||||: | :||||||| ugugUUCAUCUGCUGUGGGAACCCc 2 19 520 544 [hg19:11:55038431-55038455:+] 0.5218 149 7 -25.88 -0.3280 MIMAT0004503 hsa-miR-29a* 79097 TRIM48 gacuugUGGU-UUUCUUUAGUCa |||| |:| ||||||| ccucugACCAGAGACAAAUCAGa 2 17 495 517 [hg19:11:55038406-55038428:+] 0.5378 159 7 -17.48 -0.5988 MIMAT0004503 hsa-miR-29a* 79097 TRIM48 gacuuguggUUUUCUUUAGUCa :::| :|||||| uauuggaaaGGGAAGAAUCAGa 2 14 223 244 [hg19:11:55038134-55038155:+] 0.6095 129 6 -13.46 -0.1952 MIMAT0009196 hsa-miR-103-2* 79097 TRIM48 guUCCGUCGUGACAUUUCUUCGa | |::| : | | :|||||| cgAUGUGGAGAU-UUGAGAAGCa 2 22 46 67 [hg19:11:55037957-55037978:+] 0.5308 131 6 -10.47 -0.1110 MIMAT0000102 hsa-miR-105 79097 TRIM48 ugguguCCUC-AGAC---UCGUAAACu |||| |:|| |||||||| cgauguGGAGAUUUGAGAAGCAUUUGu 2 18 46 72 [hg19:11:55037957-55037983:+] 0.5308 155 7 -18.81 -0.6693 MIMAT0004587 hsa-miR-23b* 79097 TRIM48 uuUAGUCGUACGGUCCUUGGGu ||| || || ::||||||| ucAUCUGC-UG-UGGGAACCCc 2 21 525 544 [hg19:11:55038436-55038455:+] 0.5218 156 7 -17.97 -0.3280 MIMAT0004589 hsa-miR-30b* 79097 TRIM48 cuucauuuguaGGUGGAGGGuc ||||||||| cagucucuuuaCCACCUCCCca 3 12 309 330 [hg19:11:55038220-55038241:+] 0.5538 135 0 -20.39 -0.1148 MIMAT0004607 hsa-miR-138-1* 79097 TRIM48 ccGGGACCACAACACUUC-AUCg :||||| |||||||| ||| auUCCUGG-AUUGUGAAGCUAGa 2 21 375 396 [hg19:11:55038286-55038307:+] 0.5538 138 0 -24.39 -0.6441 MIMAT0004613 hsa-miR-188-3p 79097 TRIM48 acguuugGGACGUACACCCUc :|||| ||||||| guguucaUCUGC-UGUGGGAa 2 15 521 540 [hg19:11:55038432-55038451:+] 0.5218 152 7 -21.51 -0.3608 MIMAT0004613 hsa-miR-188-3p 79097 TRIM48 acGUUUGGGACG-UACACC-CUc || |:|:| | |||||| || guCAUAUCUUCCGAUGUGGAGAu 2 20 35 57 [hg19:11:55037946-55037968:+] 0.5308 126 0 -16.17 -0.6420 MIMAT0000754 hsa-miR-337-3p 79097 TRIM48 cuUCUUUCCGUAGUAUAU-CCUc |||| |||| :||||| ||| ucAGAAUGGCAAUAUAUAUGGAg 2 21 240 262 [hg19:11:55038151-55038173:+] 0.5402 144 0 -22.24 -0.6157 MIMAT0000755 hsa-miR-323-3p 79097 TRIM48 ucuccagcuggcacAUUACAc |||||| cuugaauugcauucUAAUGUu 2 8 609 629 [hg19:11:55038520-55038540:+] 0.4889 120 6 -4.91 -0.1262 MIMAT0004701 hsa-miR-338-5p 79097 TRIM48 gugagucgugguccuAUAACAa |||||| uuauuaaaacucauuUAUUGUg 2 8 628 649 [hg19:11:55038539-55038560:+] 0.4889 120 6 -6.62 -0.1396 MIMAT0002859 hsa-miR-516b 79097 TRIM48 uuucACGAAGA---AUGGAG-GUCUa | ||||| | |||| |||| uugcUCCUUCUCACUUCCUCUCAGAc 2 19 450 475 [hg19:11:55038361-55038386:+] 0.5538 121 0 -16.14 -0.5920 MIMAT0004779 hsa-miR-509-5p 79097 TRIM48 acuaacggugacaGACGUCAu ||||||| cuccccaauuacaCUGCAGUa 2 9 324 344 [hg19:11:55038235-55038255:+] 0.5538 140 7 -15.66 -0.9940 MIMAT0003243 hsa-miR-578 79097 TRIM48 uguUAGGAUCUCGUGUU-CUUc | :||: | ||||| ||| auuACUCUGCAUCACAAUGAAg 2 19 7 28 [hg19:11:55037918-55037939:+] 0.5308 122 0 -13.00 -0.4179 MIMAT0004802 hsa-miR-593 79097 TRIM48 ucuuuGGGGUCGUCUCUGu :|: | ||||||| ucuccUCUGACCAGAGACa 2 15 492 510 [hg19:11:55038403-55038421:+] 0.5538 146 7 -18.83 -0.7854 MIMAT0003275 hsa-miR-607 79097 TRIM48 caauAUCUAGACCUAA-ACUUg || ||||||| |||| gaauUAUUCCUGGAUUGUGAAg 2 18 370 391 [hg19:11:55038281-55038302:+] 0.5538 125 0 -12.52 -0.6123 MIMAT0003303 hsa-miR-633 79097 TRIM48 aaAUAACACCAUCUAUGAUAAUc |||||| || |||||||| uuUAUUGU-GU---UACUAUUAa 2 22 641 659 [hg19:11:55038552-55038570:+] 0.4889 159 7 -13.95 -1.2155 MIMAT0003311 hsa-miR-641 79097 TRIM48 cuccaCUGAGAUAGGAUACAGAAa |::|| :|::|||||||| aaauaGGUUCGGUUUUAUGUCUUg 2 20 589 612 [hg19:11:55038500-55038523:+] 0.4889 167 7 -18.40 -0.8100 MIMAT0004813 hsa-miR-411* 79097 TRIM48 ccaaucaccUGGCACAAUG-UAu |::||||||| || aacucauuuAUUGUGUUACUAUu 2 14 635 657 [hg19:11:55038546-55038568:+] 0.4889 121 0 -11.34 -0.9411 MIMAT0003332 hsa-miR-656 79097 TRIM48 ucucCAACUGACA-UAUU-AUAa | || |||| |||| ||| uuuuGGUGUCUGUAAUAAGUAUu 2 18 204 226 [hg19:11:55038115-55038137:+] 0.6787 124 0 -11.55 -0.8322 MIMAT0004185 hsa-miR-802 79097 TRIM48 uguuccUACUUAGAAACAAUGAc || || | ||||||| aaacucAUUUAU-UGUGUUACUa 2 18 634 655 [hg19:11:55038545-55038566:+] 0.4889 147 7 -6.35 -1.1527 MIMAT0004921 hsa-miR-889 79097 TRIM48 uguuaccaacaggCUAUAAUu ||||||| ----------gugGAUAUUAc 2 9 1 11 [hg19:11:55036815-55036815,55037913-55037922:+] 0.5930 140 7 -4.31 -0.7847 MIMAT0004952 hsa-miR-665 79097 TRIM48 uccccggagucgGAGGACCa :|||||| cauguagaauuaUUCCUGGa 2 9 364 383 [hg19:11:55038275-55038294:+] 0.5538 124 6 -14.11 -0.1109 MIMAT0004970 hsa-miR-920 79097 TRIM48 augACGA-AGGUGUCGAGGGg ||:| :|| ||||||| ugaUGUUAGUCAAAGCUCCCc 2 18 411 431 [hg19:11:55038322-55038342:+] 0.5538 152 7 -23.39 -0.8674 MIMAT0004972 hsa-miR-922 79097 TRIM48 cugcaucaggAUAAG-AGACGACg |:||| ||||||| aucagaaaugUGUUCAUCUGCUGu 2 14 512 535 [hg19:11:55038423-55038446:+] 0.5218 152 7 -18.36 -0.5178 MIMAT0004975 hsa-miR-509-3-5p 79097 TRIM48 guacuaacggugcaGACGUCAu ||||||| ccuccccaauuacaCUGCAGUa 2 9 323 344 [hg19:11:55038234-55038255:+] 0.5538 140 7 -17.74 -1.0028 MIMAT0004982 hsa-miR-939 79097 TRIM48 gugggggucUCGGAGUCGAGGGGu ||:| |||||||| guugauguuAGUCAAAGCUCCCCu 2 16 409 432 [hg19:11:55038320-55038343:+] 0.5538 155 7 -21.94 -0.9567 MIMAT0004982 hsa-miR-939 79097 TRIM48 gugggggucucggagucGAGGGGu |||||| ugcagucucuuuaccacCUCCCCa 2 8 307 330 [hg19:11:55038218-55038241:+] 0.5538 120 6 -24.34 -0.1297 MIMAT0004986 hsa-miR-943 79097 TRIM48 gaccUCCUGCCGUUGUCAGUc | || | ||||||||| cacaAUGAAGCCAACAGUCAu 2 18 19 39 [hg19:11:55037930-55037950:+] 0.5308 161 7 -13.25 -0.5108 MIMAT0005828 hsa-miR-1183 79097 TRIM48 acGGGUGAGAGUG--GUAGUGGAUG-UCAc |||| | |||| || ||||||| ||| gcCCCA-UAUCACUGCAACACCUACAAGUu 2 26 96 124 [hg19:11:55038007-55038035:+] 0.5308 146 0 -26.50 -0.4542 MIMAT0005573 hsa-miR-1225-3p 79097 TRIM48 gacccccgcCGUGUCCC-CGAGu |||::||| |||| aguuuucuuGCAUGGGGUGCUCa 2 14 121 143 [hg19:11:55038032-55038054:+] 0.5308 121 0 -20.17 -0.4347 MIMAT0005880 hsa-miR-1290 79097 TRIM48 agggACUAG-GUUUUUAGGu ||| | : ||||||| gaugUGACCGUCAAAAUCCg 2 16 77 96 [hg19:11:55037988-55038007:+] 0.5308 146 7 -14.66 -0.1386 MIMAT0005890 hsa-miR-1302 79097 TRIM48 aaaucguauUCAUACAGGGUu ||||||||||| uuacacugcAGUAUGUCCCAa 2 13 332 352 [hg19:11:55038243-55038263:+] 0.5538 160 7 -20.93 -0.8593 MIMAT0005908 hsa-miR-1257 79097 TRIM48 ccAGUCUUGGGU--AGUA-AGUGa ||| ||:||: ||| |||| cgUCAAAAUCCGCCCCAUAUCACu 2 20 85 108 [hg19:11:55037996-55038019:+] 0.5308 122 0 -19.00 -0.2374 MIMAT0005952 hsa-miR-1321 79097 TRIM48 uaGUGUAA--GUGGAGGGac | | || |||||||| guCUCUUUACCACCUCCCca 3 17 311 330 [hg19:11:55038222-55038241:+] 0.5538 131 0 -16.48 -0.1136 MIMAT0005952 hsa-miR-1321 79097 TRIM48 uaGUGUAAGUGG-AGGGAc :|:|| |||| ||||| ccUAUAUACACCAUCCCUa 2 17 430 448 [hg19:11:55038341-55038359:+] 0.5538 128 0 -17.47 -1.0066 MIMAT0005953 hsa-miR-1322 79097 TRIM48 gucGUAGU-CGUCGUAGUag :||:| | |||||| ggaUAUUACUCUGCAUCAca 3 17 3 22 [hg19:11:55037914-55037933:+] 0.5308 127 0 -10.83 -0.1373 MIMAT0005956 hsa-miR-1324 79097 TRIM48 cuuucacguaucuuaagACAGACc |||||| uggaauugggcuuuuggUGUCUGu 2 8 193 216 [hg19:11:55038104-55038127:+] 0.6787 120 6 -9.95 -0.1007 MIMAT0009450 hsa-miR-1975 79097 TRIM48 ucgAUCAGUUCGCGCCA---ACACCCCc || | | | ||| ||||||| aaaUAUUACUGGGAGGUCCAUGUGGGGg 2 23 160 187 [hg19:11:55038071-55038098:+] 0.6787 145 7 -24.53 -0.3157 MIMAT0011156 hsa-miR-2114 79097 TRIM48 cuggcgaAGUUC-CUUCCCUGAu | :|| |:||||||| auauauaUGGAGAGGAGGGACUc 2 16 251 273 [hg19:11:55038162-55038184:+] 0.5470 150 7 -17.95 -0.2888 MIMAT0011158 hsa-miR-2115 79097 TRIM48 aggUAGUCCUCAGUAC-CUUCGa || |||| : || ||||| ccgAUGUGGAGAUUUGAGAAGCa 2 20 45 67 [hg19:11:55037956-55037978:+] 0.5308 123 0 -16.52 -1.0843 MIMAT0011160 hsa-miR-2116 79097 TRIM48 ucuggaggAUACGAUUCUUGg |:||:||||||| gucuugggUGUGUUAAGAACg 2 14 278 298 [hg19:11:55038189-55038209:+] 0.5538 157 7 -16.33 -0.3951 MIMAT0014984 hsa-miR-3122 79097 TRIM48 uucUGGCAGGAGAACAGGGUUg ||:| | : |||||||| uacACUG-CAGUAUGUCCCAAg 2 20 333 353 [hg19:11:55038244-55038264:+] 0.5538 149 7 -17.10 -0.6053 MIMAT0014988 hsa-miR-3125 79097 TRIM48 agaGAGGUGUCGAAGGAGAu ||:| || |||||||| cucCUUCUCA-CUUCCUCUc 2 18 453 471 [hg19:11:55038364-55038382:+] 0.5538 159 7 -19.63 -0.4863 MIMAT0015008 hsa-miR-3140 79097 TRIM48 ugauGGACUUAAGGGU-UUUCGa ||| | ||||| ||||| aaccCCUUUA-UCCCAGAAAGCc 2 19 539 560 [hg19:11:55038450-55038471:+] 0.5399 124 0 -15.35 -0.2195 MIMAT0015012 hsa-miR-3143 79097 TRIM48 gcuuuCUUCGCGAAAUGUUACAAUa ||| :|| || :||||||| gucuuGAAUUGCAUUCUAAUGUUAu 2 21 607 631 [hg19:11:55038518-55038542:+] 0.4889 168 7 -13.08 -1.0455 MIMAT0015020 hsa-miR-548v 79097 TRIM48 accACGUUUUCA--UUGACA-UCGa ||::||: | |||||| ||| gauUGUGAAGCUAGAACUGUGAGCu 2 20 382 406 [hg19:11:55038293-55038317:+] 0.5538 126 0 -15.86 -0.4056 MIMAT0015023 hsa-miR-3150 79097 TRIM48 gguuGGAGCUCCUAGAGGGGUc :||: | | ||||||| agucUCUUUACCACCUCCCCAa 2 19 310 331 [hg19:11:55038221-55038242:+] 0.5538 150 7 -17.57 -0.9220 MIMAT0015032 hsa-miR-3158 79097 TRIM48 caggacgucucUCCUUCGGGAa || ||||||| cccuuuaucccAGAAAGCCCUc 2 12 542 563 [hg19:11:55038453-55038474:+] 0.5399 147 7 -16.67 -0.3817 MIMAT0015035 hsa-miR-3161 79097 TRIM48 uaGACCCGGAGACA-AGAAUAGUc || ||| ||| ||||||| ccCUCUUCCU-UGUGCCUUAUCAa 2 22 559 581 [hg19:11:55038470-55038492:+] 0.5234 150 7 -13.06 -0.5069 MIMAT0015040 hsa-miR-3166 79097 TRIM48 auccggUCAUCCGUA----ACAGACGc | |:||| | ||||||: cuuggaAUUGGGCUUUUGGUGUCUGUa 2 18 191 217 [hg19:11:55038102-55038128:+] 0.6787 128 0 -16.12 -0.1138 MIMAT0015043 hsa-miR-3168 79097 TRIM48 cagACUGACAUCUUGAg ||| ||||||| uugUGAAGCUAGAACUg 2 15 384 400 [hg19:11:55038295-55038311:+] 0.5538 146 7 -9.53 -0.2860 MIMAT0015049 hsa-miR-1193 79097 TRIM48 cgugcAGUGGCCAGA--UGGUAGGg || || | | ||||||| aaagcUCCCCUAUAUACACCAUCCc 2 19 422 446 [hg19:11:55038333-55038357:+] 0.5538 145 7 -16.97 -0.7543 MIMAT0015050 hsa-miR-323b-3p 79097 TRIM48 uuCUCCAGCUGGCACAUAACCc ||| |:: |||||||| uuGAGAAGCAUU-UGUAUUGGa 2 21 58 78 [hg19:11:55037969-55037989:+] 0.5308 146 7 -12.48 -0.8388 MIMAT0015050 hsa-miR-323b-3p 79097 TRIM48 uuCUCCAGCUGGCA--CAUAACCc |: ||| :: | ||||||| uuGGUGUCUGUAAUAAGUAUUGGa 2 21 206 229 [hg19:11:55038117-55038140:+] 0.6787 143 7 -13.92 -1.2898 MIMAT0015052 hsa-miR-3175 79097 TRIM48 ugcagugacgcaagaGAGGGGc |||||| cagucucuuuaccacCUCCCCa 2 8 309 330 [hg19:11:55038220-55038241:+] 0.5538 120 6 -16.01 -0.1284 MIMAT0015057 hsa-miR-3180-5p 79097 TRIM48 gcUGCACCCCGCCUCGCAG-ACCUUc |:||||| ||| | || ||||| ccAUGUGGG--GGA-C-UCUUGGAAu 2 24 177 198 [hg19:11:55038088-55038109:+] 0.6787 124 0 -20.51 -0.4676 MIMAT0015058 hsa-miR-3180-3p 79097 TRIM48 ccggaGGC-CUUCGAGGCGGGGu ||| || |||||||| ugugaCCGUCAAAAUCCGCCCCa 2 18 79 101 [hg19:11:55037990-55038012:+] 0.5308 152 7 -27.09 -1.1479 MIMAT0015070 hsa-miR-3188 79097 TRIM48 ggGGCAUAGGCGUGUUUC-GGAGa |: ||||| || |||| |||| ccCUUUAUCC-CAGAAAGCCCUCu 2 22 542 564 [hg19:11:55038453-55038475:+] 0.5399 135 0 -27.33 -0.3991 MIMAT0015080 hsa-miR-3196 79097 TRIM48 cuccggggacGGCGGGGc ||||||| ccgucaaaauCCGCCCCa 2 9 84 101 [hg19:11:55037995-55038012:+] 0.5308 140 7 -18.33 -1.1519 MIMAT0016852 hsa-miR-4298 79097 TRIM48 gacgGAGGAGGAGGACAGGGUc | |: | : ||||||| auuaCACUGCAGUAUGUCCCAa 2 19 331 352 [hg19:11:55038242-55038263:+] 0.5538 142 7 -17.01 -0.8558 MIMAT0016853 hsa-miR-4300 79097 TRIM48 cuucAUCAG-GUCGAGGGu ||||| ||||||| auguUAGUCAAAGCUCCCc 2 15 413 431 [hg19:11:55038324-55038342:+] 0.5538 153 7 -18.18 -0.8639 MIMAT0016856 hsa-miR-4303 79097 TRIM48 gacaggaguCGAGUCUu ||||||| gcaugggguGCUCAGAc 2 9 130 146 [hg19:11:55038041-55038057:+] 0.5308 140 7 -10.63 -0.1862 MIMAT0016863 hsa-miR-4311 79097 TRIM48 guGUGAGUCG----AGAGAAAg ||:||||: ||||||| gaCAUUCAGUGCAGUCUCUUUa 2 17 298 319 [hg19:11:55038209-55038230:+] 0.5538 151 7 -19.00 -0.5383 MIMAT0016868 hsa-miR-4314 79097 TRIM48 gacaGGGUAA-AGGGUCUc ||| || ||||||| gaacCCCUUUAUCCCAGAa 2 15 538 556 [hg19:11:55038449-55038467:+] 0.5399 153 7 -16.39 -0.9120 MIMAT0016878 hsa-miR-4257 79097 TRIM48 gaGUCAG-GGGUGGAGACc ||| | ::|||||||| cuCAGACUUUCACCUCUGg 2 17 140 158 [hg19:11:55038051-55038069:+] 0.6048 155 7 -28.98 -0.4422 MIMAT0016885 hsa-miR-4255 79097 TRIM48 agguagagacUUGUGAc |||||| auguaguaaaAACACUa 2 8 660 676 [hg19:11:55038571-55038587:+] 0.4889 120 6 -4.90 -0.1417 MIMAT0016908 hsa-miR-4277 79097 TRIM48 caCAUGACA---CGAGUCUUGACg | |:||| ||| ||||||| cuGGAUUGUGAAGCU-AGAACUGu 2 20 379 401 [hg19:11:55038290-55038312:+] 0.5538 152 7 -19.70 -0.7030 MIMAT0016920 hsa-miR-4289 79097 TRIM48 acUAUCGGGAC---GUGUUACg || |:||| ||||||| auAUUACUCUGCAUCACAAUGa 2 18 5 26 [hg19:11:55037916-55037937:+] 0.5308 148 7 -16.06 -1.1001 MIMAT0016923 hsa-miR-4329 79097 TRIM48 caccuugAUCCCA-GAGUCc |:|||| ||||| ucuugcaUGGGGUGCUCAGa 2 13 126 145 [hg19:11:55038037-55038056:+] 0.5308 120 0 -16.62 -0.1911 MIMAT0016926 hsa-miR-4328 79097 TRIM48 uuaggacccUUUUGAcc |||||| aauguuauuAAAACUca 3 9 624 640 [hg19:11:55038535-55038551:+] 0.4889 120 0 -2.58 -0.2732 MIMAT0000084 hsa-miR-27a 79097 TRIM48 cgcCUUGAAUCGGUGACACUu ||| ||| ||||||| uguGAAGCUAG-AACUGUGAg 2 19 385 404 [hg19:11:55038296-55038315:+] 0.5538 152 7 -19.38 -0.2334 MIMAT0000265 hsa-miR-204 79097 TRIM48 uccgUA-UCCUACUGUUUCCCUu || || || : ||||||| uguaAUAAGUAUUGGAAAGGGAa 2 19 214 236 [hg19:11:55038125-55038147:+] 0.6095 153 7 -14.99 -0.8926 MIMAT0000268 hsa-miR-211 79097 TRIM48 uccgcUUCCUACUGUUUCCCUu ||| || : ||||||| guaauAAGUAUUGGAAAGGGAa 2 18 215 236 [hg19:11:55038126-55038147:+] 0.6095 157 7 -13.54 -0.8892 MIMAT0000278 hsa-miR-221 79097 TRIM48 cuuugGGUCGUCUGUUACAUCGa ::| :| |||||||: uugugUUACUAUUAAAUGUAGUa 2 19 645 667 [hg19:11:55038556-55038578:+] 0.4889 130 0 -7.47 -0.1017 MIMAT0000279 hsa-miR-222 79097 TRIM48 ugGGUCAUCGGUCUACAUCGa ::| || ::| ||||||: ugUUACUA-UUAAAUGUAGUa 2 20 648 667 [hg19:11:55038559-55038578:+] 0.4889 133 0 -8.12 -0.1007 MIMAT0000419 hsa-miR-27b 79097 TRIM48 cguCUUGAAUCGGUGACACUu ||| ||| ||||||| uguGAAGCUAG-AACUGUGAg 2 19 385 404 [hg19:11:55038296-55038315:+] 0.5538 152 7 -17.74 -0.2334 MIMAT0000422 hsa-miR-124 79097 TRIM48 ccGUAAGUGGCGCACGGAAu | | : || :||||||| gcCCUCUUCCUUGUGCCUUa 2 19 558 577 [hg19:11:55038469-55038488:+] 0.5580 150 7 -20.04 -1.0568 MIMAT0000429 hsa-miR-137 79097 TRIM48 gaugcgcauaagaauUCGUUAUu :|||||| gggaagaaucagaauGGCAAUAu 2 9 232 254 [hg19:11:55038143-55038165:+] 0.6095 124 6 -5.24 -0.1065 MIMAT0000460 hsa-miR-194 79097 TRIM48 agguguaccucaacgACAAUGu |||||| aaaacucauuuauugUGUUACu 2 8 633 654 [hg19:11:55038544-55038565:+] 0.4889 120 6 -9.00 -0.2009 MIMAT0004683 hsa-miR-362-3p 79097 TRIM48 acUUAGGAACU--UAUCCACACAa | ||:|| : |:||||||| ggACUCUUUAGUCUUGGGUGUGUu 2 21 268 291 [hg19:11:55038179-55038202:+] 0.5538 151 7 -20.43 -0.5949 MIMAT0000720 hsa-miR-376c 79097 TRIM48 ugcACCUUAAAG-GAGA-UACAa | ||||| | :||| |||| gucUUGAAUUGCAUUCUAAUGUu 2 19 607 629 [hg19:11:55038518-55038540:+] 0.4889 125 0 -11.30 -1.1037 MIMAT0001629 hsa-miR-329 79097 TRIM48 uuucuccAAUUGG--UCCACACAa |||::| :||||||| ggacucuUUAGUCUUGGGUGUGUu 2 16 268 291 [hg19:11:55038179-55038202:+] 0.5538 150 7 -16.61 -0.5949 MIMAT0002171 hsa-miR-410 79097 TRIM48 uguccGGUAGACACAAU-AUAa ::|| ||||||| ||| cucauUUAU-UGUGUUACUAUu 2 17 637 657 [hg19:11:55038548-55038568:+] 0.4889 122 0 -11.22 -0.9411 MIMAT0002818 hsa-miR-496 79097 TRIM48 cucuaacCGGUACAUUAUGAGu |::|| ||| |||| uucuaauGUUAU-UAAAACUCa 2 16 620 640 [hg19:11:55038531-55038551:+] 0.4889 121 0 -8.82 -0.1002 MIMAT0002878 hsa-miR-506 79097 TRIM48 agaugagucuuccCACGGAAu ||||||| agcccucuuccuuGUGCCUUa 2 9 557 577 [hg19:11:55038468-55038488:+] 0.5580 140 7 -14.89 -1.0595 MIMAT0004954 hsa-miR-543 79097 TRIM48 uuCUUCACGUGGCGCUUACAAa ||| ||||:: | |||||| uuGAAUUGCAUU-CUAAUGUUa 2 21 610 630 [hg19:11:55038521-55038541:+] 0.4889 138 6 -11.59 -0.1369

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G048743 TRIM48 Homo sapiens 79097 25326393 0 0 R64505; HS$TRIM48_01; Binding factors: DUX4

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End TRIM48; RNF101 1 683 100 5.01 + chr11 55037912 55038595

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIM48 hsa-miR-204 beg:219 end:237 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |.|| ||| ||||||| &5' --GTATTGGA-----AAGGGAA 3' TRIM48 hsa-miR-3158 beg:546 end:563 pic:3' CAGGACGTCTCTCCTTCGGGAA 5'& ||| |||| ||||||| &5' -TCC--CAGA----AAGCCCT- 3' TRIM48 hsa-miR-943 beg:22 end:39 pic:3' GACCTCCTGCCGTTGTCAGTC 5'& || | ||||||||| &5' ------GAAGCCAACAGTCA- 3' TRIM48 hsv1-miR-H7 beg:530 end:548 pic:3' GGAAACCAACGTC--TGGGGAAA 5'& || | |||||||| &5' --------TGTGGGAACCCCTTT 3' TRIM48 hsa-miR-17star beg:332 end:344 pic:3' GATGTTCACGGAAGTGACGTCA 5'& ||||||||| &5' -------------CACTGCAGT 3' TRIM48 hsa-miR-4300 beg:414 end:431 pic:3' CTTCATCAGG-TCGAGGGT 5'& ||||| ||||||| &5' ----TAGTCAAAGCTCCC- 3' TRIM48 bkv-miR-B1-5p beg:460 end:475 pic:3' TACGAGAAGGGTTCAGAGTCTA 5'& ||||| ||||||| &5' -----CTTCC----TCTCAGA- 3' TRIM48 bkv-miR-B1-5p beg:127 end:146 pic:3' TACGAGAAGGGTTCA-GAGTCTA 5'& ||| . ..|| |||||| &5' -TGCA----TGGGGTGCTCAGA- 3' TRIM48 kshv-miR-K12-10b beg:101 end:117 pic:3' CGGTGAGCCCCCCTGTTGTGGT 5'& .|||| .||||||| &5' -TCACT-------GCAACACC- 3' TRIM48 hsa-miR-593 beg:492 end:511 pic:3' TCTTTGGGGTC--GTCTCTGT 5'& ||.| |||||||| &5' -----CCTCTGACCAGAGACA 3' TRIM48 hsa-miR-509-5p beg:325 end:345 pic:3' ACTAACGGTGACA--GACGTCAT 5'& ||| |||||||| &5' ------CCAATTACACTGCAGTA 3' TRIM48 ebv-miR-BART2-3p beg:440 end:459 pic:3' AAATAAAAGAGGTTTAGCGAGGAA 5'& || || |||.||||||| &5' -------TC-CCTAATTGCTCCTT 3' TRIM48 ebv-miR-BART8star beg:369 end:388 pic:3' AGATGCTGGGGTATCTAACACTG 5'& |. |..|| |.|||||||| &5' ---ATTATTCC-TGGATTGTGA- 3' TRIM48 hsa-miR-105 beg:57 end:72 pic:3' TGGTGTCCTCAGACTCGTAAACT 5'& ||| |||||||| &5' -------GAGA---AGCATTTG- 3' TRIM48 hsa-miR-506 beg:558 end:578 pic:3' AGATGAGTCTTCCCACGGAAT 5'& ||| |||||||| &5' ----CTCTTCCTTGTGCCTTA 3' TRIM48 hsa-miR-124 beg:559 end:578 pic:3' CCGTAAGT-GGCGCACGGAAT 5'& || || .|||||||| &5' -----TCTTCCTTGTGCCTTA 3' TRIM48 hcmv-miR-US33-3p beg:279 end:299 pic:3' ACCTACACGAGCCTGGCACT 5'& |||.||||.| || || &5' TGGGTGTGTTAAGAACG--- 3' TRIM48 hcmv-miR-US33-3p beg:388 end:404 pic:3' ACCTACACGAGCCTGGCACT 5'& ||| | ||.|||| &5' -------GCTAGAACTGTGA 3' TRIM48 hiv1-miR-TAR-3p beg:488 end:509 pic:3' ACCCAAG-GGATCAATC-GGTCTCT 5'& ||| ||| | ||||||| &5' ----TTCTCCTCT---GACCAGAGA 3' TRIM48 hsa-miR-103-2star beg:47 end:67 pic:3' GTTCCGTCGTGACATTTCTTCGA 5'& | | .|||||| &5' ----GTGGAGATTT-GAGAAGC- 3' TRIM48 hsa-miR-1178 beg:228 end:252 pic:3' GATCCCTTCTT-GTCAC-TCGTT 5'& ||||||||| ||| .|||| &5' --AGGGAAGAATCAGAATGGCAA 3' TRIM48 hsa-miR-1 beg:612 end:625 pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||.|||||.| &5' ------------TTGCATTCTA 3' TRIM48 hsa-miR-1183 beg:321 end:344 pic:3' ACGGGTGAGAGTGG-TAGTG-GATGTCAC 5'& || ||| || ||.|| ||.|||| &5' -----AC-CTCCCCAATTACACTGCAGT- 3' TRIM48 hsa-miR-1202 beg:143 end:161 pic:3' GAGGGGGTGACGTCGACCGTG 5'& |. ||| |||||| &5' --CTTTCACCT---CTGGCA- 3' TRIM48 hsa-miR-1224-5p beg:317 end:336 pic:3' GGTGGAGGGCTCAGGAGTG 5'& ||||||||| |.|| &5' CCACCTCCCCAA---TTAC 3' TRIM48 hsa-miR-1237 beg:254 end:270 pic:3' GACCCCCTGCCTCGTCTTCCT 5'& |.|||| .||.||| &5' -------ATGGAGAGGAGGGA 3' TRIM48 hsa-miR-1261 beg:23 end:44 pic:3' TTCGGTT-TCGGAATAGGTA 5'& ||||||| ||.| ||||. &5' AAGCCAACAGTCATATCT-- 3' TRIM48 hsa-miR-128 beg:385 end:404 pic:3' TTTCTCTGGCCAAGTGACACT 5'& || | | ||||||| &5' ---GAAGCTAGA--ACTGTGA 3' TRIM48 hsa-miR-1288 beg:294 end:315 pic:3' AGAGGTCTAGTCCCGTCAGGT 5'& | || |||| ||||||. &5' -CGACAT-TCAGTGCAGTCT- 3' TRIM48 hsa-miR-1289 beg:254 end:275 pic:3' TTTTACGTCTAAGGACCTGAGGT 5'& ||| ||| ||||||. &5' ---ATGGAGAGGAG-GGACTCT- 3' TRIM48 hsa-miR-1302 beg:336 end:353 pic:3' AAATCGTATTCATACAGGGTT 5'& || |||||||||||| &5' ----GC---AGTATGTCCCAA 3' TRIM48 hsa-miR-1304 beg:455 end:475 pic:3' GTGTAGAGTGACATCGGAGTTT 5'& ||||||| .||||.| &5' ----TCTCACTTCC-TCTCAGA 3' TRIM48 hsa-miR-1305 beg:42 end:65 pic:3' AGAGAGGGTA-ATCTC--AACTTTT 5'& .||| || |.||| ||||.|| &5' ---TTCCGATGTGGAGATTTGAGAA 3' TRIM48 hsa-miR-130bstar beg:219 end:235 pic:3' CATCACGTTGTCCCTTTCTCA 5'& |.| ||||||.| &5' -----GTATT--GGAAAGGG- 3' TRIM48 hsa-miR-135b beg:45 end:67 pic:3' AGTGTATC-CTT-ACTTTTCGGTAT 5'& |..|.| || |||.|||| &5' --ATGTGGAGATTTGAGAAGC---- 3' TRIM48 hsa-miR-136 beg:572 end:596 pic:3' AGGTAGTA-GTTTTGTTTA-CCTCA 5'& ..|||| ||..|||||| || &5' -TTATCAAACAGGACAAATAGG--- 3' TRIM48 hsa-miR-141star beg:154 end:177 pic:3' AGGTTGTGAC--ATGACCTTCTAC 5'& | .|| ||||||.||.| &5' -CTGGCAAATATTACTGGGAGGT- 3' TRIM48 hsa-miR-142-3p beg:96 end:112 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& ||||| ||||.|| &5' -CCATAT---------CACTGCA 3' TRIM48 hsa-miR-145 beg:181 end:204 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& .|||| ||.||| ||.|||.| &5' GGGGACTCTTGG---AATTGGGC 3' TRIM48 hsa-miR-150 beg:163 end:189 pic:3' GTGACCATGTTCCCA----ACCCTCT 5'& .||||| .||| ||||.|| &5' TACTGG---GAGGTCCATGTGGGGGA 3' TRIM48 hsa-miR-155star beg:527 end:540 pic:3' ACAATTACGATTATACATCCTC 5'& ||| |||.||| &5' ------TGC-----TGTGGGA- 3' TRIM48 hsa-miR-182star beg:381 end:400 pic:3' ATCAACCGTTCAGATCTTGGT 5'& ||| ||| |||||||. &5' ---TTGTGAAG-CTAGAACT- 3' TRIM48 hsa-miR-182star beg:223 end:243 pic:3' ATCAACCGTTCAGATCTTGGT 5'& |||| ||| ||||.|| &5' ---TTGGAAAGGGAAGAATCA 3' TRIM48 hsa-miR-188-3p beg:167 end:188 pic:3' ACGTTTGGGACGTACACCCTC 5'& | .|. .| ||||||||.| &5' -GGGAGGTC--CATGTGGGGG 3' TRIM48 hsa-miR-188-3p beg:518 end:540 pic:3' ACGTTTG-GGACGTACACCCTC 5'& ||.. | .|||| ||||||| &5' TGTGTTCATCTGC-TGTGGGA- 3' TRIM48 hsa-miR-193a-5p beg:342 end:359 pic:3' AGTAGAGCGGGCGTTTCTGGGT 5'& .|.|| | ||||||.| &5' ------TGTCC-C-AAGACCTA 3' TRIM48 hsa-miR-193a-5p beg:457 end:479 pic:3' AGTAGAGC--GGGCGTTTCTGGGT 5'& |||| .|| | |||||.| &5' ---TCTCACTTCCTCTCAGACCTA 3' TRIM48 hsa-miR-195star beg:206 end:229 pic:3' CCTCGT-CGTGTCGGTTATAACC 5'& || |. |.| |.|||||| &5' GGTGTCTGTAATA--AGTATTGG 3' TRIM48 hsa-miR-1973 beg:119 end:136 pic:3' ATACGATGGAAACGTGCCA 5'& |.| .| |||||.|| &5' ---GTTTTC-TTGCATGG- 3' TRIM48 hsa-miR-1979 beg:518 end:540 pic:3' ATCAGTTCACTT-----CGTCACCCTC 5'& ||| || |||||| &5' -------GTGTTCATCTGCTGTGGGA- 3' TRIM48 hsa-miR-19a beg:118 end:144 pic:3' AGTCAA---AACGTATCTAAACGTGT 5'& |||| ||||||.|. ||| || &5' --AGTTTTCTTGCATGGGG-TGCTCA 3' TRIM48 hsa-miR-2052 beg:614 end:638 pic:3' TGTAATG--ACAATAGTTTTGT 5'& .|||| ||||||.||||| &5' GCATTCTAATGTTATTAAAAC- 3' TRIM48 hsa-miR-206 beg:601 end:625 pic:3' GGTGTGTGAAGG-AATGTAAGGT 5'& .| . ||| ||.|||||.| &5' -TATGT-CTTGAATTGCATTCTA 3' TRIM48 hsa-miR-20astar beg:297 end:313 pic:3' GAAATTCACGAGTA--TTACGTCA 5'& ||| |.|||||| &5' -----------CATTCAGTGCAGT 3' TRIM48 hsa-miR-20astar beg:644 end:667 pic:3' GAAATTCACGAGTA----TTACGTCA 5'& |||.| ||||.||| &5' ------GTGTTACTATTAAATGTAGT 3' TRIM48 hsa-miR-20bstar beg:324 end:344 pic:3' GACCTTCACGGGTA----TGATGTCA 5'& |||| |||.|||| &5' ---------CCCAATTACACTGCAGT 3' TRIM48 hsa-miR-2110 beg:310 end:332 pic:3' GTGAGTCGCCGGCAAAGGGGTT 5'& ||| || ||||||| &5' --CTCTTTA-CCACCTCCCCAA 3' TRIM48 hsa-miR-2113 beg:496 end:521 pic:3' CACT-GTCTCGGTTC-GTGTTTA 5'& ||| ||||| ||| || |||| &5' -TGACCAGAGACAAATCAGAAAT 3' TRIM48 hsa-miR-2116 beg:276 end:298 pic:3' TCTGGAGG-ATACGATTCTTGG 5'& || |.| |.||.||||||| &5' AGTCTTGGGTGTGTTAAGAAC- 3' TRIM48 hsa-miR-23astar beg:522 end:545 pic:3' TTTAGGGTAGGGG---TCCTTGGGG 5'& ..||||. | .|||||||| &5' ----TTCATCTGCTGTGGGAACCCC 3' TRIM48 hsa-miR-23bstar beg:522 end:544 pic:3' TTTAGTCGTACGG--TCCTTGGGT 5'& ||| | |||. .||||||| &5' ---TCATC-TGCTGTGGGAACCC- 3' TRIM48 hsa-miR-25 beg:290 end:313 pic:3' AGTCTGGCTCTGT-TCACGTTAC 5'& ||| ||| |. ||||||.| &5' --AGAACGACATTCAGTGCAGT- 3' TRIM48 hsa-miR-26a-2star beg:228 end:249 pic:3' CTTTGTTCATTAGTTCTTATCC 5'& |.. ||| |||| |||||.| &5' -AGGGAAG-AATC-AGAATGG- 3' TRIM48 hsa-miR-27a beg:383 end:405 pic:3' CGCCTTGAATCGGTGACACTT 5'& |.| |.| ||| |||||||. &5' GTGAAGC-TAGA-ACTGTGAG 3' TRIM48 hsa-miR-27b beg:383 end:405 pic:3' CGTCTTGAATCGGTGACACTT 5'& |. |.| ||| |||||||. &5' GTGAAGC-TAGA-ACTGTGAG 3' TRIM48 hsa-miR-29astar beg:495 end:517 pic:3' GACTTGTGGTTTTC-TTTAGTCA 5'& |||| |||.|. ||||||| &5' CTGA---CCAGAGACAAATCAG- 3' TRIM48 hsa-miR-29b-2star beg:13 end:32 pic:3' GATTCGGTGGTAC-ACTTTGGTC 5'& ||.|| ||||.||| &5' ------CATCACAATGAAGCCA- 3' TRIM48 hsa-miR-29b-2star beg:375 end:396 pic:3' GATTCGGTGGT-ACACTTTGGTC 5'& || ||||||.|.|| &5' -----CCTGGATTGTGAAGCTAG 3' TRIM48 hsa-miR-300 beg:57 end:75 pic:3' TCTCTCTCAGACGGGAACATAT 5'& |||| || .|||||| &5' ---GAGAA---GCATTTGTAT- 3' TRIM48 hsa-miR-302c beg:50 end:72 pic:3' GGTGACTTTGTAC-CTTCGTGAAT 5'& ||.|. || ||||||.||. &5' -----GAGATTTGAGAAGCATTTG 3' TRIM48 hsa-miR-302d beg:51 end:72 pic:3' TGTGAGTTTGTAC-CTTCGTGAAT 5'& |.|. || ||||||.||. &5' ------AGATTTGAGAAGCATTTG 3' TRIM48 hsa-miR-302e beg:50 end:72 pic:3' TTCGT-AC-CTTCGTGAAT 5'& .|| || ||||||.||. &5' GAGATTTGAGAAGCATTTG 3' TRIM48 hsa-miR-302f beg:51 end:72 pic:3' TTTGTAC-CTTCGTTAAT 5'& |.|. || |||||| ||. &5' AGATTTGAGAAGCATTTG 3' TRIM48 hsa-miR-3118 beg:30 end:41 pic:3' TCTTAAAAGTATTACGTCAGTGT 5'& ||||||.| &5' ---------------CAGTCATA 3' TRIM48 hsa-miR-3119 beg:13 end:32 pic:3' CGGTAGTTTCAATTTTCGGT 5'& ||||| .|||||| &5' --CATCACAAT--GAAGCCA 3' TRIM48 hsa-miR-3125 beg:450 end:471 pic:3' AGA-GAGGTGTCGAAGGAGAT 5'& || ||.| || |||||||| &5' -CTCCTTCTCA-CTTCCTCT- 3' TRIM48 hsa-miR-3136 beg:19 end:39 pic:3' TTACTGGGATGGATAAGTCAGTC 5'& ||||| .|| |||||| &5' AATGAA---GCCAA--CAGTCA- 3' TRIM48 hsa-miR-3141 beg:309 end:330 pic:3' AGGAGGA--GGTGGGCGGGAG 5'& .|||.| |||||. ||| &5' -TCTCTTTACCACCTCCCC-- 3' TRIM48 hsa-miR-3143 beg:401 end:419 pic:3' GCTTTCTTCGCGAAAT-GTTACAATA 5'& |||| ..|||||| &5' ----------GCTTCGTTGATGTTA- 3' TRIM48 hsa-miR-3143 beg:609 end:632 pic:3' GCTTTCTTCGCGAAATGTTACAATA 5'& ||| .|| || .|||||||| &5' -----GAATTGCATTCTAATGTTAT 3' TRIM48 hsa-miR-3173 beg:555 end:570 pic:3' ACCGGACGGATAAAGGAGGAAA 5'& ||| ||.||||| &5' ------GCCC---TCTTCCTT- 3' TRIM48 hsa-miR-3179 beg:447 end:461 pic:3' TGCAAATTTAAAGTGGGGAAGA 5'& | |.|||||| &5' -----------TTGCTCCTTCT 3' TRIM48 hsa-miR-3180-3p beg:81 end:102 pic:3' CCGGAGGCCTTCG-AGGCGGGGT 5'& ||| ||||||||| &5' -----CCGTCAAAATCCGCCCCA 3' TRIM48 hsa-miR-3182 beg:328 end:342 pic:3' CTGATGTGATGTCTTCG 5'& |.||||||.||| &5' -ATTACACTGCAG---- 3' TRIM48 hsa-miR-3199 beg:292 end:317 pic:3' TTGAAAGAGGATTC-CGTCAGGGA 5'& ||| |.| || ||||||.|| &5' AACGACATTC--AGTGCAGTCTCT 3' TRIM48 hsa-miR-320d beg:462 end:485 pic:3' AGGAGAGT-TGGGTCGAAAA 5'& |||||||| |||.| ||||| &5' TCCTCTCAGACCTATCTTTT 3' TRIM48 hsa-miR-325 beg:152 end:173 pic:3' TGTGAATGACCTGTG---GATGATCC 5'& |||| || .||||.|| &5' -------CTGG-CAAATATTACTGGG 3' TRIM48 hsa-miR-33b beg:294 end:311 pic:3' CGTTACGTTGTC-GTTACGTG 5'& |.||| ||.|||| &5' ------CGACATTCAGTGCA- 3' TRIM48 hsa-miR-342-3p beg:525 end:540 pic:3' TGCCCACGCTAAAGAC-ACACTCT 5'& |||| ||||.|| &5' ------------TCTGCTGTGGGA 3' TRIM48 hsa-miR-361-3p beg:168 end:189 pic:3' TTTAGTCT-TAGTGTGGACCCCCT 5'& .|| .|| ||. ||||||| &5' -----GGAGGTC-CATGTGGGGGA 3' TRIM48 hsa-miR-362-3p beg:269 end:292 pic:3' ACTTAGGAA-CTT-ATCCACACAA 5'& ||.|| | |.|||||||| &5' ----TCTTTAGTCTTGGGTGTGTT 3' TRIM48 hsa-miR-373 beg:59 end:71 pic:3' TGTGGGGTTTTAGCTTCGTGAAG 5'& ||||||.|| &5' -------------GAAGCATTT- 3' TRIM48 hsa-miR-378 beg:452 end:474 pic:3' GGAAGACTGAGGTTCAG-GTCA 5'& |||||| |||.| || ||| &5' CCTTCTCACTTCC--TCTCAG- 3' TRIM48 hsa-miR-383 beg:24 end:50 pic:3' TCGG-TGTTAGTG--GAAGACTAGA 5'& |||| |||.|||. |||| ||| &5' AGCCAACAGTCATATCTTCCGAT-- 3' TRIM48 hsa-miR-423-5p beg:450 end:473 pic:3' TTTCAGAGCGAGAGAC--GGGGAGT 5'& ||| .|||| ||.|||| &5' -----CTCCTTCTCACTTCCTCTCA 3' TRIM48 hsa-miR-4257 beg:137 end:159 pic:3' GAGTCA-GGGGTGGAGACC 5'& ||||| . ||||||||| &5' CTCAGACTTTCACCTCTGG 3' TRIM48 hsa-miR-425star beg:364 end:383 pic:3' CCCGCCTGTGCTGTAAGGGCTA 5'& | || .|||||.|. &5' --GTAGAAT---TATTCCTGG- 3' TRIM48 hsa-miR-4260 beg:336 end:354 pic:3' ACCCTGAGGTACGGGGTTC 5'& .| .|||.|||||| &5' ----GCAGTATGTCCCAAG 3' TRIM48 hsa-miR-4263 beg:181 end:199 pic:3' CCGGTTCC-GTGAATCTTA 5'& ..|| | |||.|||| &5' ----GGGGACTCTTGGAAT 3' TRIM48 hsa-miR-4269 beg:197 end:217 pic:3' CGGTCCCGACAGACACGGACG 5'& ||||| |. |||.|||. &5' ----GGGCTTTTGGTGTCTGT 3' TRIM48 hsa-miR-4271 beg:547 end:570 pic:3' GGGG----TGGAAAAGAAGGGGG 5'& ||| .|| ||||||.. &5' CCCAGAAAGCCC--TCTTCCTT- 3' TRIM48 hsa-miR-4274 beg:256 end:275 pic:3' GTCC-C-CCTCCCTGACGAC 5'& || | ||||||||| || &5' --GGAGAGGAGGGACT-CT- 3' TRIM48 hsa-miR-4276 beg:155 end:173 pic:3' CGTGTACTCAGTGACTC 5'& ||| |.||||.| &5' GCAAATA--TTACTGGG 3' TRIM48 hsa-miR-4277 beg:380 end:402 pic:3' CACATGACACGA--GTCTTGACG 5'& |.|||| .|||||||. &5' ----ATTGTGAAGCTAGAACTGT 3' TRIM48 hsa-miR-4280 beg:321 end:339 pic:3' CGAGACGAGTC-TTGATGTGAG 5'& ||| ||.|||||| &5' ------CTCCCCAATTACACT- 3' TRIM48 hsa-miR-4294 beg:525 end:544 pic:3' GGGACGACATCTGAGGG 5'& .|||||||.|. ||| &5' -TCTGCTGTGGGAACCC 3' TRIM48 hsa-miR-4303 beg:460 end:475 pic:3' GACAGGAGTCGAGTCTT 5'& |.|| |||||| &5' ----CTTCCTCTCAGA- 3' TRIM48 hsa-miR-4307 beg:224 end:243 pic:3' CCTTTGTCCTTTTTTGTAA 5'& ||||| .||||.|| || &5' GGAAA-GGGAAGAATCA-- 3' TRIM48 hsa-miR-4311 beg:464 end:487 pic:3' GTGTGAGTCG----AGAGAAAG 5'& | ||||| |||.|||| &5' --CTCTCAGACCTATCTTTTTC 3' TRIM48 hsa-miR-4314 beg:539 end:556 pic:3' GACAGGGTAA-AGGGTCTC 5'& ||| ||||||| &5' ----CCCTTTATCCCAGA- 3' TRIM48 hsa-miR-4318 beg:338 end:354 pic:3' TCGTACATGGGTGTCAC 5'& ||.|||| |||| || &5' AGTATGT-CCCA-AG-- 3' TRIM48 hsa-miR-4326 beg:165 end:190 pic:3' CAGACCCTCT-GT----CTCCTTGT 5'& |||||||. | |.||.|| &5' --CTGGGAGGTCCATGTGGGGGAC- 3' TRIM48 hsa-miR-4329 beg:190 end:210 pic:3' CACCTTGATCCCAGAGTCC 5'& |||||.|.|| |.| | &5' -TGGAATTGGGCTTTTGG- 3' TRIM48 hsa-miR-490-5p beg:162 end:182 pic:3' TGGGTGGACCTCTAGGTACC 5'& ..||. ||||.|||||| &5' --TTACTGGGAGGTCCATG- 3' TRIM48 hsa-miR-498 beg:597 end:615 pic:3' CTTTTTGCGGGGGACCGAACTTT 5'& |... || |||||| &5' -------GTTTTATGTCTTGAA- 3' TRIM48 hsa-miR-513c beg:43 end:65 pic:3' TATTTGCTGTGGAG--GAACTCTT 5'& ||| . .||||||| &5' -----CGATGTGGAGATTTGAGAA 3' TRIM48 hsa-miR-520a-3p beg:51 end:71 pic:3' TGTC-AGGTTTCCCTTCGTGAAA 5'& || |. | ||||||.|| &5' --AGATTTGA---GAAGCATTT- 3' TRIM48 hsa-miR-520b beg:54 end:71 pic:3' GGGAGATTTTCCTTCGTGAAA 5'& |.|.| ||||||.|| &5' ---TTTGA---GAAGCATTT- 3' TRIM48 hsa-miR-520c-3p beg:54 end:71 pic:3' TGGGAGATTTTCCTTCGTGAAA 5'& |.|.| ||||||.|| &5' ----TTTGA---GAAGCATTT- 3' TRIM48 hsa-miR-520d-3p beg:57 end:71 pic:3' TGGGTGGTTTCTCTTCGTGAAA 5'& ||||||||.|| &5' ----------GAGAAGCATTT- 3' TRIM48 hsa-miR-520e beg:50 end:71 pic:3' GGGAGTTTTT--C-CTTCGTGAAA 5'& | .|.| | ||||||.|| &5' ---TGGAGATTTGAGAAGCATTT- 3' TRIM48 hsa-miR-520f beg:54 end:71 pic:3' TTGGGAGATTTTCCTTCGTGAA 5'& |.|.| ||||||.|| &5' -----TTTGA---GAAGCATTT 3' TRIM48 hsa-miR-524-3p beg:558 end:577 pic:3' TGAGGTTTCCCTTCGCGGAAG 5'& |||. |.||||| &5' -CTCTTCCTT---GTGCCTT- 3' TRIM48 hsa-miR-525-3p beg:558 end:577 pic:3' GCGAGATTTCCCTTCGCGGAAG 5'& |||| |.||||| &5' --CTCTTCCTT---GTGCCTT- 3' TRIM48 hsa-miR-542-5p beg:361 end:383 pic:3' AGAGCACTGTACTAC----TAGGGGCT 5'& |||| ||.||.|. &5' --------CATGTAGAATTATTCCTGG 3' TRIM48 hsa-miR-548e beg:583 end:605 pic:3' AC-GTTTTCATCAGAGTCAAAAA 5'& | |||| ||| .||.||||| &5' -GACAAA--TAGGTTCGGTTTT- 3' TRIM48 hsa-miR-564 beg:555 end:576 pic:3' CGGACGACTGTGGCACGGA 5'& ||| || | ..|||||| &5' GCCCTCTTCC-TTGTGCCT 3' TRIM48 hsa-miR-580 beg:442 end:463 pic:3' GGATTACTAAGTAGTAAGAGTT 5'& |||||| | || |||||| &5' CCTAATTG--C-TCCTTCTCA- 3' TRIM48 hsa-miR-583 beg:470 end:486 pic:3' CATTACCCTGGAAGGAGAAAC 5'& ||||| .||.||| &5' -------GACCTATCTTTTT- 3' TRIM48 hsa-miR-584 beg:349 end:368 pic:3' GAGTCAGGGTCCGTTTGGTATT 5'& || ||.| | ||||||. &5' ---AGACCTA--CCAACCATG- 3' TRIM48 hsa-miR-617 beg:146 end:178 pic:3' CGGTGGAA---GTTT------ACCCTTCAGA 5'& .||||| |||| |||||.||| &5' -TCACCTCTGGCAAATATTACTGGGAGGTC- 3' TRIM48 hsa-miR-621 beg:405 end:422 pic:3' TCCATTCGCGACAACGATCGG 5'& ||.|| ||.|||.| &5' -------CGTTGATGTTAGTC 3' TRIM48 hsa-miR-623 beg:218 end:236 pic:3' TGGGTTGTCGGGGACG-TTCCCTA 5'& ||. .|| |||||| &5' -------AGTA-TTGGAAAGGGA- 3' TRIM48 hsa-miR-628-3p beg:149 end:173 pic:3' AGCTGACGGTGAG-AATGATCT 5'& | ||| || |||||.|. &5' -CCTCTGGCAAATATTACTGGG 3' TRIM48 hsa-miR-628-3p beg:210 end:230 pic:3' AGCTGACGGTGAGAATGATCT 5'& | |||. ||.|.|| &5' --GTCTGTAATAAGTATTGGA 3' TRIM48 hsa-miR-641 beg:591 end:612 pic:3' CTCCACTGAGATAGGATACAGAAA 5'& | || .|..|||||||| &5' -----GGTTCGGTTTTATGTCTT- 3' TRIM48 hsa-miR-744star beg:230 end:254 pic:3' TCCAACTCCAATC-ACCGTTGTC 5'& .|| || ||||||.| &5' GGGAAGAATCAGAATGGCAATA- 3' TRIM48 hsa-miR-759 beg:6 end:17 pic:3' CAGTTTTAACAAACGTGAGACG 5'& .||||||| &5' --------------TACTCTGC 3' TRIM48 hsa-miR-761 beg:517 end:536 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||||| ||| .||||||. &5' TGTGT-----TCA-TCTGCTGT 3' TRIM48 hsa-miR-765 beg:482 end:500 pic:3' GTAGTGGAAGGAAGAGGAGGT 5'& .|| ||||||||. &5' -----TCTGTATTCTCCTCT- 3' TRIM48 hsa-miR-770-5p beg:62 end:79 pic:3' ACCGGGACTGTGCACCATGACCT 5'& .||. |||.|||| &5' --------GCATTT-GTATTGGA 3' TRIM48 hsa-miR-770-5p beg:209 end:230 pic:3' ACCGGGACTGTGCACCATGACCT 5'& .||| .| |||.|||| &5' ----TCTG-TAATAAGTATTGGA 3' TRIM48 hsa-miR-877 beg:482 end:501 pic:3' GGGACGCGGTAGAGGAGATG 5'& .|||. ||||||||. &5' -TCTGTAT--TCTCCTCTG- 3' TRIM48 hsa-miR-9 beg:496 end:509 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |.||||.||| &5' -------------TGACCAGAGA 3' TRIM48 hsa-miR-920 beg:411 end:432 pic:3' ATGACGAA-GGTGTCGAGGGG 5'& ||.| .|| |||||||| &5' ---TGTTAGTCAAAGCTCCCC 3' TRIM48 hsa-miR-922 beg:517 end:536 pic:3' CTGCATCAGGATAAG-AGACGACG 5'& . |.||| |||||||. &5' --------TGTGTTCATCTGCTGT 3' TRIM48 hsa-miR-924 beg:337 end:356 pic:3' CGTTCTGTAGTGTTCTGAGA 5'& |||. |..|| |||||| || &5' GCAGTATGTCCCAAGAC-CT 3' TRIM48 hsa-miR-924 beg:245 end:275 pic:3' CGTTCTGTAGTG-------TTCTGAGA 5'& |||| |.|| ..|||||| &5' GCAATATATATGGAGAGGAGGGACTCT 3' TRIM48 hsa-miR-92a beg:295 end:313 pic:3' TGTCCGGCCCTGT---TCACGTTAT 5'& |||| ||||||.| &5' ---------GACATTCAGTGCAGT- 3' TRIM48 hsa-miR-936 beg:517 end:536 pic:3' GACGCTAAGGAGGGAGATGACA 5'& ||.| ||| |||.|||| &5' -TGTG-TTCA----TCTGCTGT 3' TRIM48 hsa-miR-942 beg:222 end:239 pic:3' GTGTACCGGTTTTGTCTCTTCT 5'& . .|| ||.||||| &5' -------TTGGAA-AGGGAAGA 3' TRIM48 hsa-miR-99bstar beg:390 end:408 pic:3' GCCTGGGTGTCTGT--GCTCGAAC 5'& .||| .|||||| &5' --------TAGAACTGTGAGCTT- 3' TRIM48 hsv1-miR-H12 beg:335 end:353 pic:3' TTCGCAAGCGTGAAGCAGGGTT 5'& .||| | .||||||| &5' -------TGCAGTATGTCCCAA 3' TRIM48 hsv1-miR-H3 beg:332 end:352 pic:3' CAGGGTTGGCGTGT--CAGGGTC 5'& | ||.||| |||||| &5' ----C-ACTGCAGTATGTCCCA- 3' TRIM48 hsv2-miR-H20 beg:224 end:245 pic:3' TCTTTCCCCAGGCATTGGTTT 5'& .||||||| | ||.||.| &5' GGAAAGGGAA--G-AATCAGA 3' TRIM48 hsv2-miR-H20 beg:491 end:507 pic:3' TCTTTCCCCAGGC-ATTGGTTT 5'& ||| |.||||.| &5' ---------TCCTCTGACCAGA 3' TRIM48 hsv2-miR-H2 beg:127 end:146 pic:3' AGCGCGTACTGGGTC-CGAGTCT 5'& |||||. .| ||||||| &5' ----GCATGG---GGTGCTCAGA 3' TRIM48 hsv2-miR-H4-5p beg:388 end:408 pic:3' CGTACGCACGG-CT---CACTTGAG 5'& ||. || ||||.||. &5' --------GCTAGAACTGTGAGCTT 3' TRIM48 hsv2-miR-H7-5p beg:526 end:548 pic:3' GGAAACCAATGCC-TGGGGAAA 5'& || || || |||||||| &5' -CTGCTGTG--GGAACCCCTTT 3' TRIM48 hsv2-miR-H9-3p beg:526 end:541 pic:3' CTCCTCCTCTGGCTCCACCCTT 5'& |.| ||||||| &5' ----------CTGCTGTGGGAA 3' TRIM48 jcv-miR-J1-5p beg:454 end:475 pic:3' TACGAAAAGGGTCC---AGAGTCTT 5'& |||.|| ||||||| &5' ------TTCTCACTTCCTCTCAGA- 3' TRIM48 jcv-miR-J1-5p beg:127 end:146 pic:3' TACGAAAAGGGTCCA-GAGTCTT 5'& ||| . .||| |||||| &5' -TGCA----TGGGGTGCTCAGA- 3' TRIM48 kshv-miR-K12-2 beg:324 end:344 pic:3' GTCTAGCTGGGCC----TGATGTCAA 5'& ||| |||.|||| &5' --------CCCAATTACACTGCAGT- 3' TRIM48 sv40-miR-S1-5p beg:449 end:473 pic:3' TTCCGAGTAA-AGTCC-GGGGAGT 5'& |||| || ||| ||.|||| &5' ---GCTCCTTCTCACTTCCTCTCA 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIM48 High_conserved miR-7/7ab chr11:55032408 8-mer 2 CDS TRIM48 High_conserved miR-145 chr11:55033170 7-mer-A1 4 CDS TRIM48 High_conserved miR-150/5127 chr11:55033079 7-mer-A1 2 CDS TRIM48 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr11:55036736 7-mer-m8 0 CDS TRIM48 High_conserved miR-181abcd/4262 chr11:55033144 7-mer-m8 2 CDS TRIM48 High_conserved let-7/98/4458/4500 chr11:55032503 8-mer 4 CDS TRIM48 High_conserved miR-190/190ab chr11:55038017 7-mer-A1 4 3pUTR TRIM48 High_conserved miR-199ab-5p chr11:55033076 7-mer-m8 0 CDS TRIM48 High_conserved miR-199ab-5p chr11:55033169 7-mer-A1 7 CDS TRIM48 High_conserved miR-199ab-5p chr11:55036787 7-mer-A1 7 CDS TRIM48 High_conserved miR-204/204b/211 chr11:55038147 8-mer 2 3pUTR TRIM48 High_conserved miR-214/761/3619-5p chr11:55032780 7-mer-A1 7 CDS TRIM48 High_conserved miR-217 chr11:55033101 7-mer-m8 4 CDS TRIM48 High_conserved miR-217 chr11:55038255 7-mer-A1 2 3pUTR TRIM48 High_conserved miR-27abc/27a-3p chr11:55032694 7-mer-A1 7 CDS TRIM48 High_conserved miR-27abc/27a-3p chr11:55038315 7-mer-m8 4 3pUTR TRIM48 High_conserved miR-31 chr11:55032611 7-mer-A1 4 CDS TRIM48 High_conserved miR-103a/107/107ab chr11:55036738 7-mer-A1 0 CDS TRIM48 High_conserved miR-124/124ab/506 chr11:55038488 8-mer 4 3pUTR TRIM48 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr11:55036771 7-mer-m8 4 CDS TRIM48 High_conserved miR-128/128ab chr11:55038314 7-mer-A1 4 3pUTR TRIM48 Medium_conserved miR-543 chr11:55038541 7-mer-A1 4 3pUTR TRIM48 Medium_conserved miR-873 chr11:55032638 7-mer-A1 4 CDS TRIM48 Medium_conserved miR-874 chr11:55036773 7-mer-m8 4 CDS TRIM48 Medium_conserved miR-136 chr11:55038174 7-mer-A1 4 3pUTR TRIM48 Medium_conserved miR-202-3p chr11:55032503 7-mer-A1 4 CDS TRIM48 Medium_conserved miR-28-5p/708/1407/1653/3139 chr11:55029718 7-mer-m8 2 5pUTR TRIM48 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr11:55037974 7-mer-A1 4 3pUTR TRIM48 Medium_conserved miR-320abcd/4429 chr11:55032482 7-mer-m8 4 CDS TRIM48 Medium_conserved miR-326/330/330-5p chr11:55038419 7-mer-A1 4 3pUTR TRIM48 Medium_conserved miR-329/329ab/362-3p chr11:55038202 7-mer-m8 4 3pUTR TRIM48 Medium_conserved miR-339b/339-5p/3586-5p chr11:55032672 7-mer-A1 7 CDS TRIM48 Medium_conserved miR-374ab chr11:55035846 7-mer-m8 4 CDS TRIM48 Medium_conserved miR-125a-3p/1554 chr11:55032424 7-mer-m8 4 CDS TRIM48 Medium_conserved miR-431 chr11:55032515 8-mer 4 CDS TRIM48 Medium_conserved miR-485-5p/1698/1703/1962 chr11:55036753 7-mer-m8 4 CDS TRIM48 Medium_conserved miR-486-5p/3107 chr11:55036719 7-mer-A1 4 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIM48 RAID00106912 hsa-miR-506-3p miRNA MIMAT0002878 TRIM48 mRNA 79097 Prediction 0.2202 TRIM48 RAID00148979 hsa-miR-3150b-3p miRNA MIMAT0018194 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID00313634 hsa-miR-543 miRNA MIMAT0004954 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID00321057 hsa-miR-3150a-3p miRNA MIMAT0015023 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID00557661 hsa-miR-124-3p miRNA MIMAT0000422 TRIM48 mRNA 79097 Prediction 0.2202 TRIM48 RAID00767141 hsa-miR-3180-3p miRNA MIMAT0015058 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID00933817 hsa-miR-376c-3p miRNA MIMAT0000720 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01241978 hsa-miR-194-5p miRNA MIMAT0000460 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01343784 hsa-miR-410-3p miRNA MIMAT0002171 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01391906 hsa-miR-27a-3p miRNA MIMAT0000084 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01408869 hsa-miR-137 miRNA MIMAT0000429 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01549589 hsa-miR-221-3p miRNA MIMAT0000278 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01712200 hsa-miR-496 miRNA MIMAT0002818 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID01759099 hsa-miR-4535 miRNA MIMAT0019075 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02070921 hsa-miR-6763-5p miRNA MIMAT0027426 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02110905 hsa-miR-204-5p miRNA MIMAT0000265 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02126307 hsa-miR-362-3p miRNA MIMAT0004683 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02302373 hsa-miR-6816-5p miRNA MIMAT0027532 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02540785 hsa-miR-329-3p miRNA MIMAT0001629 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02655449 hsa-miR-222-3p miRNA MIMAT0000279 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02673320 hsa-miR-211-5p miRNA MIMAT0000268 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02690111 hsa-miR-4289 miRNA MIMAT0016920 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02903330 hsa-miR-4314 miRNA MIMAT0016868 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID02964556 hsa-miR-4303 miRNA MIMAT0016856 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03101753 hsa-miR-3143 miRNA MIMAT0015012 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03123155 hsa-miR-3180 miRNA MIMAT0018178 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03160444 hsa-miR-619-5p miRNA MIMAT0026622 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03268082 hsa-miR-2355-3p miRNA MIMAT0017950 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03305265 hsa-miR-6499-3p miRNA MIMAT0025451 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03383512 hsa-miR-4784 miRNA MIMAT0019948 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03430697 hsa-miR-323b-3p miRNA MIMAT0015050 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03500077 hsa-miR-3196 miRNA MIMAT0015080 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03564782 hsa-miR-6861-3p miRNA MIMAT0027624 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03654246 hsa-miR-27b-3p miRNA MIMAT0000419 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03666869 hsa-miR-5582-5p miRNA MIMAT0022279 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03900879 hsa-miR-6506-5p miRNA MIMAT0025468 TRIM48 mRNA 79097 Prediction 0.1828 TRIM48 RAID03965462 hsa-miR-802 miRNA MIMAT0004185 TRIM48 mRNA 79097 Prediction 0.1828