DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence NEURL3; LINCR ATTTA 350-763 1589-1593 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT018320 hsa-miR-335-5p Homo sapiens NEURL3 93082 Homo sapiens Microarray Functional MTI (Weak) 18185580

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G059861 NEURL3 Homo sapiens 93082

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile LINCR hsa-miR-3183 beg:121 end:140 pic:3' AGGCTCGCTGAGGCTCTCTCCG 5'& | |||.| |||||||| &5' ---GTGCGGCA--GAGAGAGG- 3' LINCR hsa-miR-3183 beg:46 end:64 pic:3' AGGCTCGCTGAGGCTCTCTCCG 5'& |.| || || | ||||||| &5' -CTG-GCCCCTGC-AGAGAGG- 3' LINCR hsa-miR-4330 beg:276 end:294 pic:3' CGTTCCGAGAC-TAGACTCC 5'& |.|.| |||||||| &5' -----GTTTTACATCTGAGG 3' LINCR hsa-miR-128 beg:528 end:545 pic:3' TTTCTCTGGCCA-AGTGACACT 5'& |..| |||||||| &5' ------ATTGTTGTCACTGTG- 3' LINCR hiv1-miR-TAR-5p beg:120 end:138 pic:3' AGTCTAGACCAGATTGGTCTCTCT 5'& ||| . |||||||| &5' --------GGTGC-GGCAGAGAGA 3' LINCR hiv1-miR-TAR-5p beg:479 end:495 pic:3' AGTCTAGACCAGATTGGTCTCTCT 5'& |||| ||||||||| &5' --------GGTC---CCAGAGAGA 3' LINCR hsa-miR-1909 beg:39 end:58 pic:3' GCCACTCGTGGGCCGGGGACGC 5'& ||||. |.||||||||| &5' ---TGAGT--CTGGCCCCTGC- 3' LINCR hsa-miR-1538 beg:17 end:36 pic:3' TCCTTGTCGTCGTCGGGCCCGGC 5'& || |||||||||||| &5' ------AGTGGCAGCCCGGGCC- 3' LINCR hsa-miR-583 beg:190 end:208 pic:3' CATTACCC---TGGAAGGAGAAAC 5'& || ||| ||||||| &5' -----GGAAAAACC--CCTCTTT- 3' LINCR hsa-miR-940 beg:450 end:462 pic:3' CCCCTCGCCCCCGGGACGGAA 5'& ||||||||| &5' -----------GCCCTGCCT- 3' LINCR hsa-miR-665 beg:320 end:339 pic:3' TCCCCGGAGTC--GGAGGACCA 5'& ||| | |||||||| &5' ----GCC-CTGTACCTCCTGG- 3' LINCR hsa-miR-1827 beg:151 end:168 pic:3' TAAGTTAGATGACGGAGT 5'& | .|||.||||||| &5' ---CTGTCTGCTGCCTC- 3' LINCR hsa-miR-2355 beg:79 end:97 pic:3' AACAGGTAACATAGACCCCTA 5'& || |||||||| &5' ----CCTTCTT-TCTGGGGA- 3' LINCR ebv-miR-BART10star beg:243 end:265 pic:3' ACATGTCTTGGTTTCTCCACCG 5'& ||| .|||. |.|||||| &5' TGTTTAGAGAT---GGGGTGGC 3' LINCR ebv-miR-BART18-5p beg:341 end:361 pic:3' ACATATCCTTCAC--GCTTGAACT 5'& |||| .|.|||||| &5' -------GAAGAACCTGGACTTGA 3' LINCR ebv-miR-BART21-5p beg:304 end:322 pic:3' CAATCAACGGAAGTGATCACT 5'& ||. | |||.|||| &5' ------TGTTGTGACTGGTGA 3' LINCR ebv-miR-BART5star beg:251 end:268 pic:3' TCCACT-TGTCGCCGGGTG 5'& || . .|.|||||| &5' ----GATGGGGTGGCCCA- 3' LINCR hsa-miR-22star beg:335 end:350 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& | .|.|||||||| &5' --------GGTATTGAAGAAC- 3' LINCR kshv-miR-K12-8star beg:286 end:298 pic:3' TCGCCCCGCAATCACTCCCTCA 5'& ||||||||| &5' -------------TGAGGGAGT 3' LINCR hsa-miR-345 beg:86 end:105 pic:3' CTCGGGACCTGATCCTCAGTCG 5'& ..||||. | ||||||| &5' ---TTCTGGGG-AAGAGTCAG- 3' LINCR hsa-miR-1236 beg:89 end:101 pic:3' GACCTCTCTGTTCCCCTTCTCC 5'& ||||||||| &5' ------------GGGGAAGAG- 3' LINCR hsa-miR-4297 beg:127 end:146 pic:3' GTGTCTGTCCTTCCGT 5'& || ||| ||||||||| &5' CAGAGAGAGGAAGGCA 3' LINCR hcmv-miR-UL112 beg:524 end:543 pic:3' TCGGACCTAGAGTGGCAGTGAA 5'& | | | ..|||||| &5' -----GTGTATTGTTGTCACT- 3' LINCR hiv1-miR-TAR-3p beg:471 end:493 pic:3' AC-CCAAGGGATCAATCGGTCTCT 5'& | || || || ||||||| &5' -GTGG-TCATGAGGTC-CCAGAGA 3' LINCR hiv1-miR-TAR-5p beg:43 end:65 pic:3' AGTCTAGACCAGATTGGTCTCTCT 5'& .||||| | |||||||. &5' ----GTCTGGCCCCTGCAGAGAGG 3' LINCR hsa-let-7d beg:70 end:86 pic:3' TTGATACGTTGGATGATGGAGA 5'& |||.|| ||||||. &5' ------GCAGCC--CTACCTT- 3' LINCR hsa-let-7e beg:445 end:463 pic:3' TTGATATGTTGGA-GGATGGAGT 5'& ||| || |||.|||| &5' -----TAC--CCGCCCTGCCTC- 3' LINCR hsa-let-7g beg:148 end:168 pic:3' TTGACATGTTTGATGATGGAGT 5'& ||.| ||.||.|||| &5' ----GTGCTGTCTGCTGCCTC- 3' LINCR hsa-let-7i beg:147 end:168 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& .| | ||.||.|||| &5' ---GGTGCTGTCTGCTGCCTC- 3' LINCR hsa-miR-1178 beg:87 end:111 pic:3' GATCCCTTCTT-GTCAC-TCGTT 5'& ||.|||||||. ||| .|| &5' CTGGGGAAGAGTCAGAAAGGC-- 3' LINCR hsa-miR-1205 beg:37 end:61 pic:3' GAGTTTCGT-TT-GGGACGTCT 5'& || .||. .. ||||||||| &5' -TCTGAGTCTGGCCCCTGCAGA 3' LINCR hsa-miR-1226 beg:312 end:322 pic:3' GATCCCTTGTGTCCCGACCACT 5'& ||||||| &5' ---------------CTGGTGA 3' LINCR hsa-miR-1237 beg:348 end:370 pic:3' GACCCCCTGCCTCGTCTTCCT 5'& |||| .| |||||.||| &5' CTGGACT-TGAAGCAGGAGG- 3' LINCR hsa-miR-1238 beg:120 end:143 pic:3' CCC-CGTCTGTCTG-CTCCTTC 5'& || ||.| |||| ||||||| &5' -GGTGCGG-CAGAGAGAGGAAG 3' LINCR hsa-miR-1248 beg:125 end:153 pic:3' AAATCGTGTCACGAATA-TGTTCTTCCA 5'& .||| || | .||.|.|||| &5' ---GGCAGAGAGAGGAAGGCAGGGAGGT 3' LINCR hsa-miR-1260 beg:120 end:141 pic:3' ACCA--CCGTCTCCACCCTA 5'& ||| ||||||| ||| &5' -GGTGCGGCAGAGAGAGGA- 3' LINCR hsa-miR-1266 beg:319 end:340 pic:3' TCGGGACAAGATGTCGGGACTCC 5'& |||||||| || .||||.| &5' AGCCCTGT---ACC-TCCTGGG- 3' LINCR hsa-miR-1292 beg:158 end:179 pic:3' GTCGCAGACGGCCTTGGGCAAGGGT 5'& ||||| |||.|||||| &5' ------CTGCCTCCACCTGTTCCC- 3' LINCR hsa-miR-1296 beg:60 end:82 pic:3' CCTCTA-CCTCGGTCCCGGGATT 5'& |||. |||| |. |||||| &5' -GAGGAAGGAGGCGCAGCCCTA- 3' LINCR hsa-miR-1297 beg:346 end:362 pic:3' GTGGACTTAATGAACTT 5'& |||||. ||||||| &5' -ACCTGG---ACTTGAA 3' LINCR hsa-miR-1299 beg:172 end:196 pic:3' AGGGAGTGTGTCTTAAGG-TCTT 5'& |||| || ||||.|| ||.| &5' TCCC-CA-ACAGGATAGCAAGGA 3' LINCR hsa-miR-130bstar beg:52 end:71 pic:3' CATCACGTTGTC-CCTTTCTCA 5'& ||||. || ||||.||| &5' ----TGCAG-AGAGGAAGGAG- 3' LINCR hsa-miR-130bstar beg:89 end:101 pic:3' CATCACGTTGTCCCTTTCTCA 5'& |||.|||||| &5' -----------GGGGAAGAGT 3' LINCR hsa-miR-135astar beg:308 end:331 pic:3' GCGGTG-CCGAGGTTAGGGATAT 5'& |. || ||. ||||.|| &5' -GTGACTGGTGAAG--CCCTGTA 3' LINCR hsa-miR-136 beg:221 end:242 pic:3' AGGTAGT-AGTTTTGTTTACCTCA 5'& |.||| || .||||.|| &5' -CTATCCTTCT-----GATGGGGT 3' LINCR hsa-miR-139-5p beg:534 end:545 pic:3' GACCTCTGTGCACGTGACATCT 5'& || ||||||.| &5' ----------GT-CACTGTGG- 3' LINCR hsa-miR-148bstar beg:205 end:226 pic:3' CGGACTCACATATTGTCTTGAA 5'& .||| ||. ||||||| &5' -TCTGTCC--ATGCCAGAACT- 3' LINCR hsa-miR-15bstar beg:496 end:516 pic:3' ATCTCGTCGTTTATTACTAAGC 5'& ||| | .| .||||||. &5' ----GCATCTGAAGATGATTT- 3' LINCR hsa-miR-1825 beg:131 end:150 pic:3' CCTCTCCTCCCGTGACCT 5'& ||||||| |||| ||| &5' -GAGAGGAAGGCAG-GGA 3' LINCR hsa-miR-1825 beg:56 end:75 pic:3' CCTCTCCT--C-CCGTGACCT 5'& ||||||| | |||.| &5' -GAGAGGAAGGAGGCGC---- 3' LINCR hsa-miR-184 beg:196 end:216 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |||| || |.||.||||| &5' ACCCC--TC---TTTCTGTCCA 3' LINCR hsa-miR-1912 beg:320 end:342 pic:3' AAGTGTGACGTACGA-GACCCAT 5'& .| |||.| || ||||||| &5' ---GCCCTGTAC-CTCCTGGGTA 3' LINCR hsa-miR-1915star beg:114 end:149 pic:3' CCGGG--CC-CGTCGT---------TCCGTTCCA 5'& || || ||.||| |||||.|| &5' -GCAAGAGGTGCGGCAGAGAGAGGAAGGCAGGG- 3' LINCR hsa-miR-196astar beg:523 end:540 pic:3' GAGTCCGTCAAAGAACAACGGC 5'& ||| ||||||.| &5' -------AGTGTATTGTTGTC- 3' LINCR hsa-miR-197 beg:303 end:323 pic:3' CGACC-CACCTCTTCCACCACTT 5'& ||| ||| ||||||| &5' -CTGTTGTGAC-----TGGTGAA 3' LINCR hsa-miR-202 beg:320 end:335 pic:3' AAGGGTACGGGATATGGAGA 5'& |||||.|||||| &5' -------GCCCTGTACCTC- 3' LINCR hsa-miR-2110 beg:162 end:182 pic:3' GTGAGTCGCCGGCAAAGGGGTT 5'& ||| |.| |||||||| &5' --CTCCAC--CTG-TTCCCCAA 3' LINCR hsa-miR-2110 beg:256 end:276 pic:3' GTGAGTCGCCGGCAAAGGGGTT 5'& .|.|||| ||||||| &5' -----GGTGGCCCAATCCCCAA 3' LINCR hsa-miR-2115star beg:215 end:238 pic:3' GATCGGA---GGTACTTAAGACTAC 5'& ||| |.|| |||||||| &5' ---GCCAGAACTATCC-TTCTGATG 3' LINCR hsa-miR-222star beg:329 end:346 pic:3' TCCTAGATGTGACCGATGACTC 5'& || | |||| ||.||| &5' -----CT-C-CTGGGTATTGA- 3' LINCR hsa-miR-2277 beg:138 end:159 pic:3' CTCGGTCCGTCCCGCGACAGT 5'& || |||| | ||.|||||| &5' -AGGCAGGGA-GGTGCTGTC- 3' LINCR hsa-miR-26b beg:347 end:362 pic:3' TGGATAGGACTTAATGAACTT 5'& ||||. ||||||| &5' ------CCTGG---ACTTGAA 3' LINCR hsa-miR-298 beg:190 end:213 pic:3' ACCCTCTTGGAGGGACGAAGACGA 5'& ||| || | |||| .|||||. &5' --GGAAAAAC-CCCTCTTTCTGT- 3' LINCR hsa-miR-29b-2star beg:478 end:498 pic:3' GATTCGGTGGTACACTTTGGTC 5'& |.|.| ||| ||.|||| &5' --AGGTC-CCAGA-GAGACCA- 3' LINCR hsa-miR-302f beg:357 end:372 pic:3' TTTGTACCTTCGTTAAT 5'& ||.|| |||.|.| &5' AAGCA-GGAGGTA---- 3' LINCR hsa-miR-30bstar beg:399 end:420 pic:3' CTTCATTTGTA--GGTGGAGGGTC 5'& ||.| . ||||||| &5' -----AAGCTGGGTTGCCTCCCA- 3' LINCR hsa-miR-3128 beg:213 end:223 pic:3' TACTCTCAAAAAATGAACGGTCT 5'& ||||||| &5' ----------------TGCCAGA 3' LINCR hsa-miR-3128 beg:542 end:562 pic:3' TACTCTCAAAAAATGAACGGTCT 5'& .|| ||| |||||||| &5' -----GGTAATTTCCTTGCCAG- 3' LINCR hsa-miR-3130-5p beg:323 end:342 pic:3' CCGACGTGGCCTCTGACCCAT 5'& |||.||| ||||||| &5' --CTGTACCTC---CTGGGTA 3' LINCR hsa-miR-3138 beg:196 end:217 pic:3' TGAGGGAGATGGAGTGACAGGTGT 5'& || |||||| |||||||. &5' AC-CCCTCTTT----CTGTCCAT- 3' LINCR hsa-miR-3154 beg:70 end:93 pic:3' AGACGA---GGGTTGAGGGGAAGAC 5'& || ||| || .|.||||| &5' ---GCGCAGCCCTACCTTCTTTCTG 3' LINCR hsa-miR-3154 beg:197 end:212 pic:3' AGACGAGGGTTGAGGGGAAGAC 5'& ||| |.|.||||| &5' ------CCC----CTCTTTCTG 3' LINCR hsa-miR-3158 beg:305 end:328 pic:3' CAGGACGT--CTC-TC-CTTCGGGAA 5'& |||. || .| |||||||| &5' ---CTGTTGTGACTGGTGAAGCCCT- 3' LINCR hsa-miR-3166 beg:141 end:162 pic:3' ATCCGGTCATCCGTAACAGACGC 5'& ||| .| |||. ||||||| &5' --GGCAGGGAGGTGCTGTCTGC- 3' LINCR hsa-miR-3172 beg:181 end:204 pic:3' ATTCCTGACGT-----TTTGGGGT 5'& ||||. ||| ||||||| &5' --AGGATAGCAAGGAAAAACCCC- 3' LINCR hsa-miR-3172 beg:310 end:328 pic:3' ATTCCTGA-CGTTTTGGGGT 5'& |||| | ||.|||. &5' ----GACTGGTGAAGCCCT- 3' LINCR hsa-miR-3190-3p beg:67 end:88 pic:3' GAGAGACCGG--CA-GATGGAAGGT 5'& ||| | ||||||||. &5' ------GGCGCAGCCCTACCTTCT- 3' LINCR hsa-miR-3191 beg:414 end:430 pic:3' GACAGACCGGTCGATGCAGGGGT 5'& ||| | ||||||| &5' --------CCA-CAA-GTCCCCA 3' LINCR hsa-miR-3195 beg:345 end:364 pic:3' TTGGGCCCGGGCCGCGC 5'& ||||.|| |..| || &5' AACCTGGACTTGAAGC- 3' LINCR hsa-miR-3196 beg:443 end:458 pic:3' CTCCGGGGACGGCGGGGC 5'& |. | ||||||.| &5' ---GTTAC--CCGCCCTG 3' LINCR hsa-miR-3202 beg:450 end:470 pic:3' TAATTTCGAGAA-GAGGGAAGGT 5'& || || |||||||.|| &5' ------GCCCTGCCTCCCTTTCA 3' LINCR hsa-miR-326 beg:470 end:492 pic:3' GACCTCC----TTCCCGGGTCTCC 5'& || || .||| ||||||| &5' --GGTGGTCATGAGGTCCCAGAG- 3' LINCR hsa-miR-326 beg:56 end:77 pic:3' GAC-CTCCTTC--CCGGGTCTCC 5'& | ||||||| ||| ||| &5' --GAGAGGAAGGAGGCGCAG--- 3' LINCR hsa-miR-326 beg:87 end:106 pic:3' GACCTCCTTCCCGGGTCTCC 5'& |||| ||||| | .|||| &5' CTGG-GGAAGAG-TCAGA-- 3' LINCR hsa-miR-330-3p beg:227 end:249 pic:3' AGAGAC-GTCCGGCACACGAAACG 5'& .|||| ..|| ||||||||. &5' -TTCTGATGGG----GTGCTTTGT 3' LINCR hsa-miR-330-5p beg:471 end:493 pic:3' CGGATTCTGTG-TCC-GGGTCTCT 5'& .| ||. ||| |||||||| &5' -----GGTCATGAGGTCCCAGAGA 3' LINCR hsa-miR-339-5p beg:121 end:150 pic:3' GCAC-TCGAGGA---CCTCCTGTCCCT 5'& ||| .|| ||| |.|||||| &5' -GTGCGGCAGAGAGAGGAAGGCAGGGA 3' LINCR hsa-miR-340star beg:239 end:259 pic:3' CGATATTTCATTGACTCTGCCT 5'& ||| || ||||.||. &5' GCTTT---GTTTA-GAGATGGG 3' LINCR hsa-miR-34bstar beg:150 end:167 pic:3' GTTAGTCGATTACTGTGACGGAT 5'& |||. ..|||||| &5' ------GCTGTC--TGCTGCCT- 3' LINCR hsa-miR-363star beg:156 end:174 pic:3' TTTAACGTAGCACTAGGTGGGC 5'& ||| ||||||.| &5' ----TGCTGCC---TCCACCTG 3' LINCR hsa-miR-365star beg:405 end:428 pic:3' TGTCGACGGGGACT-TTCAGGGA 5'& .|.||||.| ||||||| &5' --GGTTGCCTCCCACAAGTCCC- 3' LINCR hsa-miR-378 beg:202 end:222 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& |.||||| |||| |||| &5' CTTTCTG--TCCATG-CCAG- 3' LINCR hsa-miR-378b beg:407 end:427 pic:3' AAGACGGAGG---TTCAGGTCA 5'& .||||||| |||||| &5' --TTGCCTCCCACAAGTCC--- 3' LINCR hsa-miR-412 beg:303 end:324 pic:3' TGCCGATCAC-CTGGTCCACTTCA 5'& ||. || |||. ||||||| &5' ----CTGTTGTGACT-GGTGAAG- 3' LINCR hsa-miR-4254 beg:249 end:268 pic:3' CTCTACCACCTCATCGAGGTCCG 5'& ||||||| .||.|| ||| &5' GAGATGG---GGTGGC-CCA--- 3' LINCR hsa-miR-4256 beg:86 end:106 pic:3' TGGAAGTAGTC-CAGTCTA 5'& .|| . || |||||| &5' -TCTGGGGAAGAGTCAGA- 3' LINCR hsa-miR-4257 beg:441 end:459 pic:3' GAGTCAG-GGGTGGAGACC 5'& .|||. |||.|| ||| &5' --TAGTTACCCGCC-CTG- 3' LINCR hsa-miR-4261 beg:580 end:596 pic:3' ACCCAGGGACAAAGGA 5'& ||.. |||||||| &5' ---GTTTGTGTTTCCT 3' LINCR hsa-miR-4265 beg:404 end:422 pic:3' GGGTCTCGACTC-GGGTGTC 5'& | | |.|| |||||| &5' -CTGG-GTTGCCTCCCACA- 3' LINCR hsa-miR-4265 beg:31 end:49 pic:3' GGGTCTCGACTCGGGTGTC 5'& ||.||| |||||.|. &5' CCTAGATCTGAGTCT---- 3' LINCR hsa-miR-4266 beg:320 end:339 pic:3' CCGGTTCC-GGAGGATC 5'& ||| ||||||.| &5' -GCCCTGTACCTCCTGG 3' LINCR hsa-miR-4273 beg:206 end:225 pic:3' GACAGGTAGTCTCTTGTG 5'& |||||||| ||||| &5' CTGTCCATGCCAGAAC-- 3' LINCR hsa-miR-4274 beg:138 end:161 pic:3' GTCC--CCCTCCCTGAC-GAC 5'& ||| |||||| ||| ||| &5' -AGGCAGGGAGGTGCTGTCTG 3' LINCR hsa-miR-4277 beg:525 end:545 pic:3' CACATGACACGAGTCTTGACG 5'& |||||.||| || ||||. &5' GTGTATTGTTGTC---ACTGT 3' LINCR hsa-miR-4278 beg:187 end:205 pic:3' GTTCCCGTTTGGGGGATC 5'& ||||| |||||||. &5' CAAGGAAAAACCCCT--- 3' LINCR hsa-miR-4283 beg:64 end:82 pic:3' TTTGAGCGACTCGGGGT 5'& ..| ||| |||||.| &5' GGAGGCGC--AGCCCTA 3' LINCR hsa-miR-4284 beg:252 end:267 pic:3' TACCCCACTACACTCGGG 5'& |||||||| |||| &5' ATGGGGTG------GCCC 3' LINCR hsa-miR-4285 beg:39 end:58 pic:3' TACTCAGCCTGAGCGGCG 5'& |||||| |.| | |.|| &5' -TGAGTCTGGCCC-CTGC 3' LINCR hsa-miR-4287 beg:284 end:297 pic:3' TTTCACGGGAGTTCCCTCT 5'& .|| .|||||| &5' -------TCT-GAGGGAG- 3' LINCR hsa-miR-4290 beg:131 end:155 pic:3' CTC-CCTTCT-TTCCTCC-CGT 5'& ||| |||||. |.||||| || &5' GAGAGGAAGGCAGGGAGGTGC- 3' LINCR hsa-miR-4298 beg:155 end:178 pic:3' GACGGAGGAGGAGGACAGGGTC 5'& ||||. ||||| |||||.|| &5' CTGCTGCCTCCACCTGTTCC-- 3' LINCR hsa-miR-4300 beg:467 end:489 pic:3' CTTCATCAGG--TCGAGGGT 5'& ..||.||| || ||||| &5' -GGGTGGTCATGAGGTCCCA 3' LINCR hsa-miR-4314 beg:472 end:492 pic:3' GACAG-GGTAAAGGGTCTC 5'& ||| . | |||||||| &5' --GTCATGAGGTCCCAGAG 3' LINCR hsa-miR-4322 beg:391 end:422 pic:3' GGG-GTGCG--CGACTC------GGGTGTC 5'& || ||.| ||||.| |||||| &5' -CCACATGGAAGCTGGGTTGCCTCCCACA- 3' LINCR hsa-miR-4325 beg:282 end:302 pic:3' AGT-GACTCTGTTCACGTT 5'& || |||||. .||| ||. &5' -CATCTGAGG-GAGTTCAG 3' LINCR hsa-miR-4328 beg:390 end:409 pic:3' TTAGGACC-CTTTTGACC 5'& ||| |.||.|||| &5' --TCCACATGGAAGCTGG 3' LINCR hsa-miR-432star beg:138 end:160 pic:3' TCTGTACCTCCTCGGTAGGTC 5'& ||.|| ||||| ||..||. &5' AGGCAGGGAGGTGCTGTCT-- 3' LINCR hsa-miR-4330 beg:24 end:46 pic:3' CGT-TCCGAGA-CTAGACTCC 5'& || .||| || |||||||| &5' GCCCGGGC-CTAGATCTGAG- 3' LINCR hsa-miR-433 beg:464 end:482 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& .| ||| | . .|||||| &5' ---TC-AGG-G-TGGTCATGA- 3' LINCR hsa-miR-449c beg:146 end:167 pic:3' TGTCGGCGATCGTTATGTGACGGAT 5'& || .|||. | .|||||| &5' --AGGTGCTGTCT----GCTGCCT- 3' LINCR hsa-miR-452star beg:495 end:513 pic:3' GTGAATGAAGAAACGTCTACTC 5'& |.| ||| |||||| &5' ----TGCATCTGA--AGATGA- 3' LINCR hsa-miR-454star beg:230 end:242 pic:3' CGTCTCTGTTATAACTATCCCA 5'& ||||.|||| &5' -------------TGATGGGGT 3' LINCR hsa-miR-502-5p beg:174 end:196 pic:3' ATCGTGGG----TCTATCGTTCCTA 5'& ||| .||||||||||| &5' -----CCCAACAGGATAGCAAGGA- 3' LINCR hsa-miR-510 beg:320 end:342 pic:3' CACTAACGG----TGAGAGGACTCAT 5'& ||| || ||||||.||| &5' ------GCCCTGTAC-CTCCTGGGTA 3' LINCR hsa-miR-511 beg:123 end:146 pic:3' ACTGACGTCTCG--TTTTCTGTG 5'& .| |||||| ..|||.|| &5' --GCGGCAGAGAGAGGAAGGCA- 3' LINCR hsa-miR-515-5p beg:81 end:98 pic:3' GTCTTTCACGAAAGAAA-ACCTCTT 5'& |||||| |||.||| &5' -----------TTCTTTCTGGGGAA 3' LINCR hsa-miR-516a-3p beg:49 end:68 pic:3' TGGGA-GACTTTCCTTCGT 5'& |||| | ||.|||||| &5' -CCCTGCAGAGAGGAAG-- 3' LINCR hsa-miR-516a-3p beg:225 end:244 pic:3' TGGGAGACTTTCCTTCGT 5'& ||.||||| .||. || &5' -CCTTCTGATGGGGTGC- 3' LINCR hsa-miR-516bstar beg:49 end:68 pic:3' TGGGA-GACTTTCCTTCGT 5'& |||| | ||.|||||| &5' -CCCTGCAGAGAGGAAG-- 3' LINCR hsa-miR-516bstar beg:225 end:244 pic:3' TGGGAGACTTTCCTTCGT 5'& ||.||||| .||. || &5' -CCTTCTGATGGGGTGC- 3' LINCR hsa-miR-517star beg:80 end:96 pic:3' TCTGTCACGAAGGTAGATCTCC 5'& ||||. |||.|.| &5' --------CTTCTTTCTGGGG- 3' LINCR hsa-miR-518d-3p beg:227 end:248 pic:3' CGAGGTTTCCCTTCGCGAAAC 5'& .|| | ||| |.|||||| &5' -TTCTGATGGG--GTGCTTTG 3' LINCR hsa-miR-520a-5p beg:80 end:96 pic:3' TCTTTCATGAAGGGAGACCTC 5'& ||||..|||||.| &5' --------CTTCTTTCTGGGG 3' LINCR hsa-miR-524-3p beg:228 end:247 pic:3' TGAGGTTTCCCTTCGCGGAAG 5'& .|| | ||| |.||.|| &5' -TTCTGATGGG--GTGCTTT- 3' LINCR hsa-miR-525-3p beg:227 end:247 pic:3' GCGAGATTTCCCTTCGCGGAAG 5'& .|||.| ||| |.||.|| &5' --TTCTGATGGG--GTGCTTT- 3' LINCR hsa-miR-548v beg:427 end:449 pic:3' ACCACGTTTTCATT--GACATCGA 5'& |. |.|||. ||||||.| &5' ----GT-AGAGTGGATCTGTAGTT 3' LINCR hsa-miR-548v beg:526 end:548 pic:3' ACCACGTTTT--CATTGACATCGA 5'& |||.| || |||||.|. &5' --GTGTATTGTTGTCACTGTGGT- 3' LINCR hsa-miR-549 beg:520 end:541 pic:3' TCTCGAGTAGGTATCAACAGT 5'& | .| .|| ||||||| &5' ---GAAAGTGTATTGTTGTCA 3' LINCR hsa-miR-551a beg:396 end:414 pic:3' ACCTTTGGTTCTCACCCAGCG 5'& |||||.| |||||.|| &5' TGGAAGC------TGGGTTGC 3' LINCR hsa-miR-552 beg:152 end:175 pic:3' AACAGAT--TGGTCAGTGGACAA 5'& |||||. .|| |||||||| &5' -TGTCTGCTGCCTC-CACCTGTT 3' LINCR hsa-miR-576-3p beg:270 end:290 pic:3' CTAAGGTTAAA-AAGGTGTAGAA 5'& ||||| ||..|||||| &5' ----CCAATCAGTTTTACATCT- 3' LINCR hsa-miR-582-3p beg:542 end:564 pic:3' CCAAGTCAAC-AAGT--TGGTCAAT 5'& .|| ||| .|||||| &5' -----GGTAATTTCCTTGCCAGTT- 3' LINCR hsa-miR-584 beg:479 end:500 pic:3' GAGTCAGGGTCCGTTTGGTATT 5'& .||||||| |.|||||. &5' ---GGTCCCAGAGAGACCATG- 3' LINCR hsa-miR-586 beg:365 end:389 pic:3' CC-TGGATTTTTATGTTACGTAT 5'& || |.||. ||. ||||.||| &5' GGTATCTGCAAGG--AATGTATA 3' LINCR hsa-miR-588 beg:458 end:479 pic:3' CAAGATTGGGTAACACCGGTT 5'& || ..|| ||||.|| &5' --TCCCTTTCAGGGTGGTCA- 3' LINCR hsa-miR-601 beg:339 end:358 pic:3' GAGGAGGTTGTTAGGATCTGGT 5'& |. || || |||.|||. &5' ----TTGAAGAA-CCTGGACT- 3' LINCR hsa-miR-625star beg:430 end:449 pic:3' ACTCCCCCTTTCAAGATATCAG 5'& ||| ||| |||.||||. &5' -GAGT-GGA----TCTGTAGTT 3' LINCR hsa-miR-637 beg:409 end:432 pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& || ||| |||.||||||| &5' --GCCT--CCCACAAGTCCCCAGT 3' LINCR hsa-miR-642 beg:280 end:296 pic:3' GTTCTGTGTAAACCTCTCCCTG 5'& .|||| |||||| &5' -----TACATCT---GAGGGA- 3' LINCR hsa-miR-650 beg:148 end:169 pic:3' CAGGACTCTCGCGACGGAGGA 5'& || ||| .||||||||| &5' GTGCTGTC--TGCTGCCTCC- 3' LINCR hsa-miR-650 beg:450 end:464 pic:3' CAGGACTCTCGCGACGGAGGA 5'& || |||||||| &5' ---------GCCCTGCCTCC- 3' LINCR hsa-miR-650 beg:397 end:418 pic:3' CAGGACTCTCG---CGACGGAGGA 5'& || ||| |.||||||| &5' ----TGGAAGCTGGGTTGCCTCC- 3' LINCR hsa-miR-744 beg:440 end:460 pic:3' ACGACAATCGGGATCGGGGCGT 5'& |. |||| ||| ||||.|| &5' -GTAGTTA-CCC--GCCCTGC- 3' LINCR hsa-miR-761 beg:144 end:165 pic:3' ACACAGTCAAAGTGGGACGACG 5'& | .|| .||||||| &5' ---GGAGGTGCTG-TCTGCTGC 3' LINCR hsa-miR-873 beg:551 end:568 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& || | ||||.||| &5' ------CTTGCCAGTTTCTG- 3' LINCR hsa-miR-886-5p beg:35 end:54 pic:3' GGCGAACTCGATTGAGGCTGGGC 5'& || ||.| ||.|.||| &5' ------GATCTGAGTCTGGCCC- 3' LINCR hsa-miR-920 beg:156 end:180 pic:3' ATGACGAAGGTGT-CGAGGGG 5'& |.|||| ||||| |.||||| &5' TGCTGCCTCCACCTGTTCCCC 3' LINCR hsa-miR-922 beg:145 end:165 pic:3' CTGCATCAGGATAAGAGACGACG 5'& | .|| ||. |||||||| &5' ---GAGGTGCTG---TCTGCTGC 3' LINCR hsa-miR-92bstar beg:157 end:178 pic:3' GTGACG-TGGCGCAGGGCAGGGA 5'& |||| .|| | ||.||.|| &5' --CTGCTGCCTCCACCTGTTCC- 3' LINCR hsa-miR-937 beg:125 end:149 pic:3' CCGTCTCTCAGTCTCGCG-CCTA 5'& ||||||||| .|| || ||. &5' GGCAGAGAGA-GGAAGGCAGGG- 3' LINCR hsa-miR-939 beg:160 end:181 pic:3' GTGGGGGTCTCGGAGTCGAGGGGT 5'& .||.||| ||| |.|||||| &5' -GCCTCCA---CCT--GTTCCCCA 3' LINCR hsa-miR-941 beg:392 end:411 pic:3' CGTGTACACGTGTGTCGGCCCAC 5'& |||||| | |||.|||| &5' -CACATG-GA----AGCTGGGT- 3' LINCR hsa-miR-942 beg:45 end:66 pic:3' GTGTACCGGTTTTGTCTCTTCT 5'& ||||| .||||||.|| &5' ----TGGCCCCTGCAGAGAGGA 3' LINCR hsv1-miR-H13 beg:68 end:82 pic:3' GGTCACGAGCGTGAAGCGGGATT 5'& ||.| |||||| &5' ---------GCGCA--GCCCTA- 3' LINCR hsv1-miR-H1 beg:199 end:221 pic:3' AGGTGAAGGGCAGGAA-GGTAG 5'& || |||.|.|||| ||| &5' -CCTCTTTCTGTCCATGCCA-- 3' LINCR hsv1-miR-H16 beg:317 end:339 pic:3' CGGAAGCTA-GGGTC--GGAGGACC 5'& .|| ||| |||||||| &5' -----TGAAGCCCTGTACCTCCTGG 3' LINCR hsv1-miR-H3 beg:472 end:490 pic:3' CAGGGTTGGCGTGTCAGGGTC 5'& ||| .| .||||||| &5' GTCA----TGA--GGTCCCAG 3' LINCR hsv1-miR-H5-5p beg:450 end:466 pic:3' CATCTCTACGGGCTTGGGGGGG 5'& |||| .||.|||. &5' --------GCCCT-GCCTCCCT 3' LINCR hsv1-miR-H6-3p beg:135 end:154 pic:3' CCCTACCTTCCTGCCCTTCAC 5'& |||||| ||||.||| &5' -----GGAAGGCAGGGAGGTG 3' LINCR hsv1-miR-H7star beg:249 end:269 pic:3' CTTCT-CCCCAGCCCTAGGTTT 5'& .||| ||||| || |||| &5' -GAGATGGGGT-GGC--CCAA- 3' LINCR hsv2-miR-H13 beg:68 end:82 pic:3' GTCACGAGCGTGAAACGGGATT 5'& ||.| |||||| &5' --------GCGCA--GCCCTA- 3' LINCR hsv2-miR-H5 beg:443 end:466 pic:3' CCAGTCCACCGGGCTCGGGGGGG 5'& ||.| |||| |||.|||. &5' -GTTACCC-GCCCT-GCCTCCCT 3' LINCR kshv-miR-K12-12star beg:160 end:181 pic:3' AGTTGGTCCCGTGGG-AGGGGGT 5'& | .|| ||||. |.||||| &5' -CTGCCTC--CACCTGTTCCCCA 3' LINCR kshv-miR-K12-1star beg:135 end:158 pic:3' CCAA-CGTCCTTTGTCCACGACG 5'& || |||||. ||||||||. &5' GGAAGGCAGGG---AGGTGCTGT 3' LINCR kshv-miR-K12-6-3p beg:211 end:229 pic:3' GAGTTGTCGGGCTTTTGGTAGT 5'& || ||| .|||.||| &5' --CAT--GCCA--GAACTATC- 3' LINCR sv40-miR-S1-3p beg:350 end:367 pic:3' TGAGTCCCGTACTTTGTCCG 5'& || | ||||.|||| &5' -----GGACTTGAAGCAGG- 3'