DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome UBQLN3 3'UTR a69411a509 BA116456 NM_017481 chr11:5485104-5487363:- UBQLN3 5'UTR a69411a509 CA182681 NM_017481 chr11:5485398-5487729:-

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence UBQLN3 ATTTA 149-2116 2218-2222

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT029449 hsa-miR-26b-5p Homo sapiens UBQLN3 50613 Homo sapiens Microarray Functional MTI (Weak) 19088304

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004514 hsa-miR-29b-1* 50613 UBQLN3 agAU-UUGGUGGUAUACUUUGGUcg || |:|::| ||| |||||| aaUACAGCUGCAUUAU-AAACCAaa 3 23 79 102 [hg19:11:5528719-5528742:-] 0.6431 139 0 -10.19 -0.2942 MIMAT0004515 hsa-miR-29b-2* 50613 UBQLN3 gauUCGGUGGUACACUUUGGUc |||:: ||| |||||| uacAGCUG-CAUUAUAAACCAa 2 20 81 101 [hg19:11:5528720-5528740:-] 0.6798 125 6 -10.35 -0.3904 MIMAT0004550 hsa-miR-30c-2* 50613 UBQLN3 ucUCAUUUG-UCGGAAGAGGGUc ||| | ||| ||||||| cuAGUUCCCUAGC--UCUCCCAu 2 21 53 73 [hg19:11:5528748-5528768:-] 0.6064 144 7 -15.84 -0.8517 MIMAT0004566 hsa-miR-218-2* 50613 UBQLN3 gcgccacgaacugucUUGGUAc |||||| agccuuauucauucaAACCAUa 2 8 2 23 [hg19:11:5528798-5528819:-] 0.6193 120 6 -6.28 -0.1173 MIMAT0004588 hsa-miR-27b* 50613 UBQLN3 caagugguuaGUC-GAUUCGAGa ||| |||||||| uggggggcccCAGUCUAAGCUCu 2 13 222 244 [hg19:11:5528577-5528599:-] 0.6113 151 7 -20.64 -0.1344 MIMAT0004593 hsa-miR-130a* 50613 UBQLN3 cgucuGUCAUCGUGUUACACUu || | | |||||||| acaccCAAUUUC-CAAUGUGAa 2 18 271 291 [hg19:11:5528530-5528550:-] 0.6566 147 7 -12.95 -1.1083 MIMAT0004610 hsa-miR-150* 50613 UBQLN3 gaCAGGGGGUCCGGACAUGGUc ||| ||| |:||||||| gaGUCAACCA--CUUGUACCAc 2 21 194 213 [hg19:11:5528608-5528627:-] 0.5961 157 7 -22.30 -0.5135 MIMAT0004674 hsa-miR-30c-1* 50613 UBQLN3 ccUCAUUUGUUGGGAGAGGGUc ||| | | |||||||| cuAGUUCCCUA-GCUCUCCCAu 2 21 53 73 [hg19:11:5528748-5528768:-] 0.6064 146 7 -15.20 -0.8785 MIMAT0002890 hsa-miR-299-5p 50613 UBQLN3 uacauacacccugccAUUUGGu |||||| aauacagcugcauuaUAAACCa 2 8 79 100 [hg19:11:5528721-5528742:-] 0.6431 120 6 -7.21 -0.3239 MIMAT0000690 hsa-miR-296-5p 50613 UBQLN3 uguccuaacucCCCCCCGGGa ||||||||| acuauaccacuGGGGGGCCCc 2 11 212 232 [hg19:11:5528589-5528609:-] 0.5659 150 7 -23.50 -0.2380 MIMAT0004682 hsa-miR-361-3p 50613 UBQLN3 uuUAGUCUUAGUGUGGACCCCCu | || || || ||||||| guACCACUAU-ACCACUGGGGGg 2 22 207 228 [hg19:11:5528593-5528614:-] 0.5659 151 7 -20.74 -0.3107 MIMAT0000734 hsa-miR-380* 50613 UBQLN3 cgCGUACAAGAUAC-CAGUUGGu || || | |:|| ||||||| guGC-UG-UGUGUGAGUCAACCa 2 21 183 203 [hg19:11:5528618-5528638:-] 0.5961 151 7 -24.68 -0.8001 MIMAT0004749 hsa-miR-424* 50613 UBQLN3 uaucgucgcGGAGUGCAAAAc || :||||||| ucauucaaaCCAUACGUUUUc 2 13 10 30 [hg19:11:5528791-5528811:-] 0.6193 148 7 -11.43 -1.2083 MIMAT0002847 hsa-miR-518c* 50613 UBQLN3 guCUUUCACGA-AGGGAGGUCUCu |:|:| | |: :||||||| guGGAGGCAAUGUUGUUCCAGAGu 2 22 124 147 [hg19:11:5528674-5528697:-] 0.6263 148 7 -19.36 -0.5812 MIMAT0004777 hsa-miR-513a-3p 50613 UBQLN3 ggaagagucuuuccacUUUAAAu |||||| agcugcauuauaaaccAAAUUUa 2 8 84 106 [hg19:11:5528715-5528737:-] 0.6798 120 6 -6.79 -0.1965 MIMAT0003165 hsa-miR-545 50613 UBQLN3 cguGUGUUA-UUUA-CAAACGACu :|| || ||:| ||||||| auuUACUAUGAAGUCCUUUGCUGu 2 20 102 125 [hg19:11:5528696-5528719:-] 0.6531 153 7 -12.44 -0.4977 MIMAT0003220 hsa-miR-556-5p 50613 UBQLN3 gaGUAUAAUGUUA-CUCGA-GUAg ||| || ||| |||| ||| ccCAUUUUUGAAUACAGCUGCAUu 2 21 69 92 [hg19:11:5528729-5528752:-] 0.6431 123 0 -8.02 -1.1949 MIMAT0003227 hsa-miR-563 50613 UBQLN3 cccuuUGCAUACAGUUGGa ::||: ||||||| gcuguGUGUGAGUCAACCa 2 15 185 203 [hg19:11:5528618-5528636:-] 0.5961 150 7 -14.68 -0.8110 MIMAT0003235 hsa-miR-570 50613 UBQLN3 cguuuccauuaacgaCAAAAGc |||||| ucauucaaaccauacGUUUUCc 2 8 10 31 [hg19:11:5528790-5528811:-] 0.6193 120 6 -5.39 -0.2861 MIMAT0003249 hsa-miR-584 50613 UBQLN3 gagucaGGGUCCGUUUGGUAUu ::|| ||||||||| gccuuaUUCAUUCAAACCAUAc 2 17 3 24 [hg19:11:5528797-5528818:-] 0.6193 156 7 -15.18 -0.8391 MIMAT0003250 hsa-miR-585 50613 UBQLN3 aucgUAUGUCUAUGCGGGu ||:|| ||| ||| ugagAUGCAAUUACACCCa 2 16 259 277 [hg19:11:5528544-5528562:-] 0.6566 123 0 -15.96 -0.1247 MIMAT0003255 hsa-miR-588 50613 UBQLN3 caagauuggguaacACCGGUu |||||| acgaggaagacuaaUGGCCAa 2 8 150 170 [hg19:11:5528651-5528671:-] 0.6263 120 6 -12.19 -0.1103 MIMAT0003277 hsa-miR-609 50613 UBQLN3 ucucuacucucuuUGUGGGa |||||| uugagaugcaauuACACCCa 2 8 258 277 [hg19:11:5528544-5528563:-] 0.6566 120 6 -17.95 -0.4050 MIMAT0003286 hsa-miR-617 50613 UBQLN3 cgguggaaguuuaccCUUCAGa |||||| aaccaaauuuacuauGAAGUCc 2 8 96 117 [hg19:11:5528704-5528725:-] 0.6531 120 6 -13.44 -0.1296 MIMAT0003288 hsa-miR-619 50613 UBQLN3 ugACCCGUGUUUGUAC-AGGUC-CAg ||| :||| || ||||| || ugUGGAGGCAAUGUUGUUCCAGAGUc 2 23 123 148 [hg19:11:5528673-5528698:-] 0.6263 121 0 -20.63 -0.7178 MIMAT0003297 hsa-miR-628-3p 50613 UBQLN3 agcugacGGUGAGAAUGAUcu ||| :|||||| uuauaaaCCAAAUUUACUAug 3 15 91 111 [hg19:11:5528710-5528730:-] 0.6531 130 0 -12.06 -0.1290 MIMAT0004810 hsa-miR-629 50613 UBQLN3 ucaagaggGUUGCAUUUGGgu || : |||||| uacagcugCAUUAUAAACCaa 3 14 81 101 [hg19:11:5528720-5528740:-] 0.6798 125 0 -8.73 -0.3545 MIMAT0003299 hsa-miR-630 50613 UBQLN3 uggaagggaccauguCUUAUGa |||||| agcucucccauuuuuGAAUACa 2 8 63 84 [hg19:11:5528737-5528758:-] 0.6431 120 6 -13.51 -0.1786 MIMAT0003304 hsa-miR-634 50613 UBQLN3 cagGUUUCAACCCCACGAC-CAa || ||| | ||||||| || aaaCAUAGUGGAGGUGCUGUGUg 2 20 170 192 [hg19:11:5528629-5528651:-] 0.6263 135 0 -21.88 -0.4439 MIMAT0003316 hsa-miR-646 50613 UBQLN3 cgGAGUCUCCGUCGACGaa :|:: | ||||||| uuUUUGAAUACAGCUGCau 3 18 73 91 [hg19:11:5528730-5528748:-] 0.6431 129 0 -12.37 -0.1465 MIMAT0003337 hsa-miR-659 50613 UBQLN3 accccugggagggacUUGGUUc |||||| uacagcugcauuauaAACCAAa 2 8 81 102 [hg19:11:5528719-5528740:-] 0.6798 120 6 -9.55 -0.4229 MIMAT0005797 hsa-miR-1301 50613 UBQLN3 cuucaGUGAGGG--UCCGUCGACGUu ||:|::: | |||||||| ucuccCAUUUUUGAAUACAGCUGCAu 2 20 66 91 [hg19:11:5528730-5528755:-] 0.6431 150 7 -21.78 -1.1406 MIMAT0004912 hsa-miR-890 50613 UBQLN3 guugacUACGGAAAGGU-UCAu |||:: ||||| ||| gaggcaAUGUUGUUCCAGAGUc 2 16 127 148 [hg19:11:5528673-5528694:-] 0.6263 123 0 -10.41 -0.6992 MIMAT0005829 hsa-miR-1184 50613 UBQLN3 ccuUCGGUAGUUCAG-CGACGUcc | :: | || | |||||| cccAUUUUUGAAUACAGCUGCAuu 3 21 69 92 [hg19:11:5528729-5528752:-] 0.6431 123 0 -11.32 -0.1627 MIMAT0005593 hsa-miR-1238 50613 UBQLN3 ccccgUCUGUCUGCUCCUUc || || |||||||| uccagAGUCA-ACGAGGAAg 2 16 140 158 [hg19:11:5528663-5528681:-] 0.6263 153 7 -21.22 -0.8882 MIMAT0005872 hsa-miR-1207-3p 50613 UBQLN3 cuuuacucccgGUCGACu |||||| auuuuugaauaCAGCUGc 2 8 72 89 [hg19:11:5528732-5528749:-] 0.6431 120 6 -10.43 -0.2893 MIMAT0005887 hsa-miR-1299 50613 UBQLN3 agggaGUGUGUCUUAAGGUCUu || |:: :||||||| ggaggCA-AUGUUGUUCCAGAg 2 18 126 146 [hg19:11:5528675-5528695:-] 0.6263 143 7 -13.75 -0.3794 MIMAT0005908 hsa-miR-1257 50613 UBQLN3 ccaguCUUGG-GU-AGUAAGUga ||:|| :| ||||||| -----GAGCCUUAUUCAUUCAaa 3 17 1 18 [hg19:11:5528803-5528820:-] 0.6193 134 0 -14.92 -0.1132 MIMAT0005914 hsa-miR-1262 50613 UBQLN3 uaggaagAUGUUUAAGUGGGUa |:||| | |||||| cuugagaUGCAAUUACACCCAa 2 16 257 278 [hg19:11:5528543-5528564:-] 0.6566 131 6 -14.86 -0.2668 MIMAT0005789 hsa-miR-513c 50613 UBQLN3 uauuugcUGUGGA-GGAACUCUu |::||| :||||||| ucugcuuAUGCCUAUCUUGAGAu 2 16 242 264 [hg19:11:5528557-5528579:-] 0.6566 154 7 -15.04 -1.0485 MIMAT0014982 hsa-miR-3120 50613 UBQLN3 acggacagauGUGAACGACAc | :||||||| acuaugaaguCCUUUGCUGUg 2 12 106 126 [hg19:11:5528695-5528715:-] 0.6531 143 7 -16.13 -0.5886 MIMAT0014987 hsa-miR-548s 50613 UBQLN3 uuuuauugacgucaaaACCGGUa |||||| caacgaggaagacuaaUGGCCAa 2 8 148 170 [hg19:11:5528651-5528673:-] 0.6263 120 6 -10.15 -0.1126 MIMAT0014988 hsa-miR-3125 50613 UBQLN3 agagagGUGUCGAAGGAGAu :||: :||||||| aaaccaUACGUUUUCCUCUg 2 15 16 35 [hg19:11:5528786-5528805:-] 0.6129 150 7 -19.59 -0.9611 MIMAT0015003 hsa-miR-3136 50613 UBQLN3 uuacugggauGGAUAAGUCAGUc |:|||||| ||| ------gagcCUUAUUCAUUCAa 2 14 1 17 [hg19:11:5528804-5528820:-] 0.6193 129 0 -11.30 -0.1190 MIMAT0015006 hsa-miR-3138 50613 UBQLN3 ugagggAGAUGGAGUGACA-GGUGu || ||| | :||| |||| ugugagUCAACCAC-UUGUACCACu 2 19 191 214 [hg19:11:5528607-5528630:-] 0.5961 120 0 -13.58 -0.7022 MIMAT0015021 hsa-miR-3148 50613 UBQLN3 uucguguguggucaAAAAAGGu ||||||| uuuuccucugugccUUUUUCCc 2 9 26 47 [hg19:11:5528774-5528795:-] 0.6129 140 7 -8.12 -0.6107 MIMAT0015026 hsa-miR-3153 50613 UBQLN3 uuuacAGGGAUGAGCGAAAGGGg ||: |:| | :|||||| uuuccUCUGUGC-CUUUUUCCCa 2 19 27 48 [hg19:11:5528773-5528794:-] 0.6129 136 6 -18.38 -0.1436 MIMAT0015378 hsa-miR-3065-3p 50613 UBQLN3 gaGGUUGU-UAU-AGGACCACGACu |||| | ||| | ||||||| ggCCAAAACAUAGUGGAGGUGCUGu 2 22 165 189 [hg19:11:5528632-5528656:-] 0.6263 155 7 -19.91 -0.5950 MIMAT0015069 hsa-miR-3187 50613 UBQLN3 ggcgCGUCGGGGUACCGGUu | || |: ||||||| cgagGAAGACUAAUGGCCAa 2 17 151 170 [hg19:11:5528651-5528670:-] 0.6263 152 7 -17.55 -1.1479 MIMAT0015086 hsa-miR-3201 50613 UBQLN3 uaAAAAGAAGUAUAGGg ||||: ||||||| ccUUUUUCCCAUAUCCu 2 16 38 54 [hg19:11:5528767-5528783:-] 0.6064 155 7 -12.89 -0.7122 MIMAT0015087 hsa-miR-514b-5p 50613 UBQLN3 uacuaACGGAGGGAGAACUCUu ||||| |||||||| gcuuaUGCCU--AUCUUGAGAu 2 18 245 264 [hg19:11:5528557-5528576:-] 0.6566 154 7 -20.18 -1.0350 MIMAT0016858 hsa-miR-4306 50613 UBQLN3 auGACGGAAAGAGAGGu :| ||| |||||| agUUCCCUAGCUCUCCc 2 16 55 71 [hg19:11:5528750-5528766:-] 0.6064 123 6 -14.78 -0.1868 MIMAT0016860 hsa-miR-4307 50613 UBQLN3 ccuUUGUCCUUUUUUGUAa ||: || ||||||| acuAAU-GGCCAAAACAUa 2 17 159 176 [hg19:11:5528645-5528662:-] 0.6263 146 7 -6.84 -0.6268 MIMAT0016872 hsa-miR-4317 50613 UBQLN3 uuugagggaCCGUUACa ||||||| ugcuguggaGGCAAUGu 2 9 120 136 [hg19:11:5528685-5528701:-] 0.6263 140 7 -12.46 -0.6779 MIMAT0016902 hsa-miR-4272 50613 UBQLN3 uguuagugaucAACUUAc |||||| cucucccauuuUUGAAUa 2 8 65 82 [hg19:11:5528739-5528756:-] 0.6431 120 6 -5.24 -0.1286 MIMAT0000078 hsa-miR-23a 50613 UBQLN3 ccuUUAGGGACCGUUACACUa |||::| |||||||| cccAAUUUC---CAAUGUGAa 2 19 274 291 [hg19:11:5528530-5528547:-] 0.6566 150 7 -12.25 -1.1083 MIMAT0000227 hsa-miR-197 50613 UBQLN3 cgaccCACCUCUUC--CAC-CACUu ||||||: | ||| |||| acauaGUGGAGGUGCUGUGUGUGAg 2 18 172 196 [hg19:11:5528625-5528649:-] 0.6263 124 0 -21.89 -0.5305 MIMAT0000273 hsa-miR-216a 50613 UBQLN3 agugucaACGG-UCG-ACUCUAau |||| | | |||||| cugcuuaUGCCUAUCUUGAGAUgc 3 16 243 266 [hg19:11:5528555-5528578:-] 0.6566 129 0 -12.93 -0.1553 MIMAT0000418 hsa-miR-23b 50613 UBQLN3 ccaUUAGGGACCGUUACACUa |||::| |||||||| cccAAUUUC---CAAUGUGAa 2 19 274 291 [hg19:11:5528530-5528547:-] 0.6566 150 7 -12.25 -1.1083 MIMAT0000422 hsa-miR-124 50613 UBQLN3 ccGUAAGUGGCG-CACGGAAu |:||: || | ||||||| uaCGUUUUCCUCUGUGCCUUu 2 19 22 42 [hg19:11:5528779-5528799:-] 0.6129 157 7 -19.42 -1.0807 MIMAT0000431 hsa-miR-140-5p 50613 UBQLN3 gaUGGUAUCCCAUU---UUGGUGAc :|::| | ||:| ||||||| guGCUGU-GUGUGAGUCAACCACUu 2 21 183 206 [hg19:11:5528615-5528638:-] 0.5961 145 7 -14.06 -0.2408 MIMAT0000441 hsa-miR-9 50613 UBQLN3 agUAUGUCGAUCUA----UUGGUUUcu ||||||||: || ||||||| gaAUACAGCUGCAUUAUAAACCAAAuu 3 22 78 104 [hg19:11:5528717-5528743:-] 0.6431 152 0 -17.52 -0.1938 MIMAT0000455 hsa-miR-185 50613 UBQLN3 aguccUUGACGGAAAGAGAGGu |::| ||| |||||| auccuAGUUCCCUAGCUCUCCc 2 18 50 71 [hg19:11:5528750-5528771:-] 0.6064 129 6 -15.72 -0.1885 MIMAT0000646 hsa-miR-155 50613 UBQLN3 uggggauagugcuaauCGUAAUu |||||| auuuuugaauacagcuGCAUUAu 2 8 72 94 [hg19:11:5528727-5528749:-] 0.6431 120 6 -7.91 -0.1190 MIMAT0004683 hsa-miR-362-3p 50613 UBQLN3 acUUAGGAACUUAUCCAC-ACAa || | | | : ||||| ||| caAAACAUAGUGGAGGUGCUGUg 2 21 168 190 [hg19:11:5528631-5528653:-] 0.6263 120 0 -10.11 -0.4580 MIMAT0000727 hsa-miR-374a 50613 UBQLN3 gugaaUA-GUCCAACAUAAUAUu || || | || |||||| uuugaAUACA-GCUGCAUUAUAa 2 18 75 96 [hg19:11:5528725-5528746:-] 0.6431 122 6 -8.33 -0.1444 MIMAT0000729 hsa-miR-376a 50613 UBQLN3 ugcaccuaaaaggaGAUACUa |||||| auaaaccaaauuuaCUAUGAa 2 8 93 113 [hg19:11:5528708-5528728:-] 0.6531 120 6 -7.87 -0.1762 MIMAT0000730 hsa-miR-377 50613 UBQLN3 uguUUUCAACGGAAACACACUa ::|| || || ||||||| aguGGAGGUG-CUGUGUGUGAg 2 20 176 196 [hg19:11:5528625-5528645:-] 0.6263 157 7 -15.83 -0.3795 MIMAT0000753 hsa-miR-342-3p 50613 UBQLN3 ugcCCACGCUAAAGACACACUCu ||||| | |||||||| ggaGGUGC----UGUGUGUGAGu 2 21 179 197 [hg19:11:5528624-5528642:-] 0.6263 151 7 -21.16 -0.5198 MIMAT0002172 hsa-miR-376b 50613 UBQLN3 uuguaccuaaaaggaGAUACUa |||||| uauaaaccaaauuuaCUAUGAa 2 8 92 113 [hg19:11:5528708-5528729:-] 0.6531 120 6 -7.95 -0.1762 MIMAT0002878 hsa-miR-506 50613 UBQLN3 agaugagucuuccCACGGAAu ||||||| uacguuuuccucuGUGCCUUu 2 9 22 42 [hg19:11:5528779-5528799:-] 0.6129 140 7 -11.46 -1.0856 MIMAT0003258 hsa-miR-590-5p 50613 UBQLN3 gacGUGAAAAUACUUAU-UCGAg | | ||| |||||| |||| ucuCCCAUUUUUGAAUACAGCUg 2 20 66 88 [hg19:11:5528733-5528755:-] 0.6431 135 0 -12.22 -1.1548 MIMAT0004955 hsa-miR-374b 50613 UBQLN3 gugaAUCGUCCAACAUAAUAUa || || | || |||||| ugaaUA-CA-GCUGCAUUAUAa 2 19 77 96 [hg19:11:5528725-5528744:-] 0.6431 122 6 -6.54 -0.1444

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G047878 UBQLN3 Homo sapiens 50613

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End UBQLN3 1 291 100 5.01 - chr11 5528529 5528820

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile UBQLN3 hsa-miR-1238 beg:139 end:159 pic:3' CCCCGTCT--GTCTGCTCCTTC 5'& |||| || ||||||||| &5' ----CAGAGTCA-ACGAGGAAG 3' UBQLN3 hsa-miR-513c beg:246 end:264 pic:3' TATTTGCTGTGGA-GGAACTCTT 5'& |..||| .||||||| &5' -------ATGCCTATCTTGAGA- 3' UBQLN3 hsa-miR-514b-5p beg:247 end:264 pic:3' TACTAACGGAGGGAGAACTCTT 5'& ||||| |||||||| &5' -----TGCCTA--TCTTGAGA- 3' UBQLN3 ebv-miR-BART3star beg:204 end:226 pic:3' TCGTGTTGTGATT--GTGATCCA 5'& |.|| ||||| ||||.|| &5' -GTAC--CACTATACCACTGGG- 3' UBQLN3 hsa-miR-4317 beg:126 end:137 pic:3' TTTGAGGGACCGTTACA 5'& |||||||| &5' ---------GGCAATGT 3' UBQLN3 hsa-miR-296-5p beg:220 end:232 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||||||||| &5' -----------GGGGGGCCC- 3' UBQLN3 kshv-miR-K12-1star beg:174 end:190 pic:3' CCAACGTCCTTTGTCCACGACG 5'& | | ||||||||. &5' ----GTGG-----AGGTGCTGT 3' UBQLN3 hsa-miR-506 beg:28 end:42 pic:3' AGATGAGTCTTCCCACGGAAT 5'& ||| ||||||| &5' ----CTCT-----GTGCCTT- 3' UBQLN3 hsa-miR-1237 beg:218 end:241 pic:3' GACCCCCTGCC-TCGTCTTCCT 5'& |||||||.| ||. ||| &5' CTGGGGGGCCCCAGTCTAAG-- 3' UBQLN3 hsa-miR-124 beg:22 end:42 pic:3' CCGTAAGTGGC-GCACGGAAT 5'& |.||. || .||||||| &5' --CGTTTTCCTCTGTGCCTT- 3' UBQLN3 hsa-miR-1261 beg:0 end:14 pic:3' TTCGGTTTCGGAATAGGTA 5'& .||||||||.||| &5' ------GAGCCTTATTCAT 3' UBQLN3 hsa-miR-1265 beg:34 end:55 pic:3' TTGTTGTGAACT--GGTGTAGGAC 5'& .| ||| |||.||||| &5' ----GC-CTTTTTCCCATATCCT- 3' UBQLN3 hsa-miR-1299 beg:127 end:146 pic:3' AGGGAGTGTGTCT-TAAGGTCTT 5'& .|| .|||||||. &5' ------GCAATGTTGTTCCAGAG 3' UBQLN3 hsa-miR-1301 beg:69 end:91 pic:3' CTTCAGTGAGGGTCC--GTCGACGTT 5'& ||.|. . |||||||| &5' -----CATTTTTGAATACAGCTGCA- 3' UBQLN3 hsa-miR-1306 beg:138 end:153 pic:3' GTGGTGGTCTCGGTTGCA 5'& ||||||.||||| &5' -----CCAGAGTCAACG- 3' UBQLN3 hsa-miR-1322 beg:80 end:95 pic:3' GTCGTAGTCGTCGTAGTAG 5'& |||| ||||.|| &5' ------CAGCTGCATTAT- 3' UBQLN3 hsa-miR-133a beg:151 end:172 pic:3' GTCGACCAACTTCCC-CTGGTTT 5'& || || |.||||| &5' -----GGAAGACTAATGGCCAAA 3' UBQLN3 hsa-miR-133b beg:151 end:172 pic:3' ATCGACCAACTTCCC-CTGGTTT 5'& || || |.||||| &5' -----GGAAGACTAATGGCCAAA 3' UBQLN3 hsa-miR-137 beg:114 end:135 pic:3' GATGCG-CATAAGAATTCGTTATT 5'& || .|| ||. |.|||||. &5' CTTTGCTGTGG----AGGCAATG- 3' UBQLN3 hsa-miR-151-3p beg:218 end:239 pic:3' GGAGTTCCTCGAAGTCAGATC 5'& || ..||.|| ||||||| &5' -CT-GGGGGGCCCCAGTCTA- 3' UBQLN3 hsa-miR-152 beg:233 end:255 pic:3' GGTTCAAGAC-AGTACGTGACT 5'& |.||| |||| |.|||| || &5' CTAAGCTCTGCTTATGC-CT-- 3' UBQLN3 hsa-miR-202 beg:40 end:63 pic:3' AAGGGTACGGGATAT-GGAGA 5'& ||||||| |||| || || &5' TTCCCATATCCTAGTTCC-CT 3' UBQLN3 hsa-miR-214 beg:111 end:126 pic:3' TGACGGACAGACACGGACGACA 5'& ||| ..|||||| &5' -------GTCC---TTTGCTGT 3' UBQLN3 hsa-miR-220c beg:22 end:38 pic:3' TCAGAAGTGTTGTCGGGACACA 5'& ||.||| |.||||| &5' -GTTTTC-------CTCTGTG- 3' UBQLN3 hsa-miR-24 beg:181 end:200 pic:3' GACAAGGACGACTTG-ACTCGGT 5'& ||||| ||||.|| &5' -------TGCTGTGTGTGAGTCA 3' UBQLN3 hsa-miR-27bstar beg:225 end:245 pic:3' CAAGTGGTTAGTC-GATTCGAGA 5'& .|| ||| ||||||||| &5' ----GCCC--CAGTCTAAGCTCT 3' UBQLN3 hsa-miR-3065-3p beg:170 end:189 pic:3' GAGGTTGTTATAGGACCACGACT 5'& | |.|.|. ||||||| &5' ---C-ATAGTGGA--GGTGCTG- 3' UBQLN3 hsa-miR-30c-2star beg:34 end:49 pic:3' TCTCATTTGTCGG-AAGAGGGTC 5'& ||| ||.||||| &5' ----------GCCTTTTTCCCA- 3' UBQLN3 hsa-miR-3120 beg:111 end:127 pic:3' ACGGACAGATGTGAACGACAC 5'& ||| .|||||||| &5' -----GTCC---TTTGCTGTG 3' UBQLN3 hsa-miR-3125 beg:16 end:36 pic:3' AGAGAGGTGT-C-GAAGGAGAT 5'& |||.| | .|||||||. &5' -----CCATACGTTTTCCTCTG 3' UBQLN3 hsa-miR-3143 beg:118 end:139 pic:3' GCTTTCTTCG-CGAAA-TGTTACAATA 5'& || |. .|||||||.| &5' --------GCTGTGGAGGCAATGTTGT 3' UBQLN3 hsa-miR-3153 beg:16 end:34 pic:3' TTTACAGGGATGAGCGAAAGGGG 5'& || |. ||.|||||.| &5' -------CC-ATACGTTTTCCTC 3' UBQLN3 hsa-miR-342-3p beg:177 end:197 pic:3' TGC-CCACGCTAAAGACACACTCT 5'& | ||||| | |||||||| &5' --GAGGTGC----TGTGTGTGAG- 3' UBQLN3 hsa-miR-377 beg:176 end:196 pic:3' TGTTTTCAACGGAAACACACTA 5'& . .|.| |||. ||||||| &5' GTGGAGG-TGCTG-TGTGTGA- 3' UBQLN3 hsa-miR-4284 beg:179 end:199 pic:3' TACCCCAC----TACACTCGGG 5'& | |||| .||||||.| &5' --GAGGTGCTGTGTGTGAGTC- 3' UBQLN3 hsa-miR-4314 beg:62 end:80 pic:3' GACAGGGTAAAGGGTCTC 5'& || ||||||||.. | &5' CTCTCCCATTTTTGA--- 3' UBQLN3 hsa-miR-485-3p beg:176 end:196 pic:3' TCTCTCCTCT-CGGCACATACTG 5'& | ||||. ||.||||.||| &5' ---GTGGAGGTGCTGTGTGTGA- 3' UBQLN3 hsa-miR-490-5p beg:248 end:268 pic:3' TGGGTGGACCTCTAGGTACC 5'& .||.|.|| ||||| || &5' GCCTATCTTGAGATGCA--- 3' UBQLN3 hsa-miR-498 beg:246 end:264 pic:3' CTTTTTGCGGGGGACCGAACTTT 5'& |.|||. |||||.| &5' -----ATGCCTAT---CTTGAGA 3' UBQLN3 hsa-miR-516b beg:124 end:146 pic:3' TTTCACGAAGAATGGAGGTCTA 5'& ..|| || .|||||| &5' GGAG-GCAATGTTGTTCCAGA- 3' UBQLN3 hsa-miR-518cstar beg:127 end:146 pic:3' GTCTTTCACGA---AGGGAGGTCTCT 5'& || |. .||||||| &5' --------GCAATGTTGTTCCAGAG- 3' UBQLN3 hsa-miR-525-3p beg:28 end:43 pic:3' GCGAGATTTCCCTTCGCGGAAG 5'& |||| |.|||||. &5' --CTCT--------GTGCCTTT 3' UBQLN3 hsa-miR-545 beg:102 end:125 pic:3' CGTGTGTTATTTAC--AAACGACT 5'& .|| ||.|| ||||||| &5' ---TACTATGAAGTCCTTTGCTG- 3' UBQLN3 hsa-miR-564 beg:22 end:41 pic:3' CGGACGACTGT-GGCACGGA 5'& |.| | |.|||||| &5' ----GTTTTCCTCTGTGCCT 3' UBQLN3 hsa-miR-574-3p beg:174 end:198 pic:3' ACAC--CCAC-ACACGTACTCGCAC 5'& ||| |||| ||||..||||. &5' -GTGGAGGTGCTGTGTGTGAGT--- 3' UBQLN3 hsa-miR-584 beg:2 end:24 pic:3' GAGTCAGGGTCCGTTTGGTATT 5'& ||.| ..|| ||||||||| &5' CTTA--TTCATTCAAACCATA- 3' UBQLN3 hsa-miR-588 beg:155 end:171 pic:3' CAAGATTGGGTAACACCGGTT 5'& .||. ||||||| &5' -----GACTAA---TGGCCAA 3' UBQLN3 hsa-miR-720 beg:221 end:236 pic:3' ACCTCCGGGGTCGCTCT 5'& ||.||||||||. &5' -GGGGGCCCCAGT---- 3' UBQLN3 hsa-miR-760 beg:137 end:149 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& .||||||.| &5' ----------TCCAGAGTC- 3' UBQLN3 hsa-miR-876-5p beg:99 end:118 pic:3' ACCACTAAGTGTTTCTTTAGGT 5'& |||.|| |||.||| &5' -----ATTTACTATGAAGTCC- 3' UBQLN3 hsv1-miR-H12 beg:127 end:145 pic:3' TTCGCAAGCGTGA-AGCAGGGTT 5'& ||| |.||.|||. &5' --------GCAATGTTGTTCCAG 3' UBQLN3 hsv1-miR-H2star beg:174 end:196 pic:3' TCAGACACGGCC-CG-CGCACGCT 5'& ||| || || |.|||.|| &5' -----GTGGAGGTGCTGTGTGTGA 3' UBQLN3 hsv1-miR-H4 beg:225 end:248 pic:3' ACGAACGGA--CAG-TTTGAGATGG 5'& ||| ||| ||.||||.|. &5' -----GCCCCAGTCTAAGCTCTGCT 3' UBQLN3 hsv1-miR-H8 beg:196 end:218 pic:3' CTTGGGGGAC-TGG-GATATAT 5'& |||| |.|| ||| ||||| &5' -AACCACTTGTACCACTATA-- 3' UBQLN3 hsv1-miR-H8star beg:211 end:228 pic:3' ATATATGTCCCTGGCCCCCG 5'& ||||| ||.||||| &5' --TATACC---ACTGGGGG- 3' UBQLN3 kshv-miR-K12-11 beg:73 end:94 pic:3' AGCCTGTGTCCGATTCGTAATT 5'& |.| |.||| ||| |||||| &5' TTGAATACA-GCT--GCATTA- 3' UBQLN3 kshv-miR-K12-8 beg:237 end:256 pic:3' ACGAGA-GAGTCAGCGCGGATC 5'& ||||| ||.| .||||| &5' -GCTCTGCTTA----TGCCTA- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region UBQLN3 High_conserved miR-130ac/301ab/301b/301b-3p/454/721/4295/3666 chr11:5530020 8-mer 0 CDS UBQLN3 High_conserved miR-130ac/301ab/301b/301b-3p/454/721/4295/3666 chr11:5530662 7-mer-A1 2 CDS UBQLN3 High_conserved miR-9/9ab chr11:5530697 7-mer-A1 18 CDS UBQLN3 High_conserved miR-99ab/100 chr11:5529129 7-mer-A1 4 CDS UBQLN3 High_conserved miR-138/138ab chr11:5529915 7-mer-m8 7 CDS UBQLN3 High_conserved miR-140/140-5p/876-3p/1244 chr11:5528606 7-mer-A1 13 3pUTR UBQLN3 High_conserved miR-140/140-5p/876-3p/1244 chr11:5528615 7-mer-m8 16 3pUTR UBQLN3 High_conserved miR-143/1721/4770 chr11:5529626 8-mer 18 CDS UBQLN3 High_conserved miR-150/5127 chr11:5529440 7-mer-A1 18 CDS UBQLN3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr11:5528844 7-mer-m8 47 CDS UBQLN3 High_conserved miR-183 chr11:5530495 7-mer-m8 13 CDS UBQLN3 High_conserved miR-18ab/4735-3p chr11:5529255 7-mer-m8 33 CDS UBQLN3 High_conserved miR-199ab-5p chr11:5529038 7-mer-A1 13 CDS UBQLN3 High_conserved miR-199ab-5p chr11:5530124 8-mer 31 CDS UBQLN3 High_conserved miR-19ab chr11:5530021 7-mer-m8 0 CDS UBQLN3 High_conserved miR-204/204b/211 chr11:5529573 7-mer-A1 42 CDS UBQLN3 High_conserved miR-205/205ab chr11:5530646 7-mer-A1 51 CDS UBQLN3 High_conserved miR-214/761/3619-5p chr11:5529264 7-mer-A1 16 CDS UBQLN3 High_conserved miR-214/761/3619-5p chr11:5530793 7-mer-m8 49 5pUTR UBQLN3 High_conserved miR-216a chr11:5530167 7-mer-m8 36 CDS UBQLN3 High_conserved miR-218/218a chr11:5529471 7-mer-A1 16 CDS UBQLN3 High_conserved miR-218/218a chr11:5530178 7-mer-A1 56 CDS UBQLN3 High_conserved miR-221/222/222ab/1928 chr11:5531160 7-mer-A1 11 5pUTR UBQLN3 High_conserved miR-23abc/23b-3p chr11:5528530 8-mer 11 3pUTR UBQLN3 High_conserved miR-24/24ab/24-3p chr11:5529367 7-mer-m8 27 CDS UBQLN3 High_conserved miR-103a/107/107ab chr11:5528845 7-mer-m8 56 CDS UBQLN3 High_conserved miR-103a/107/107ab chr11:5528990 8-mer 22 CDS UBQLN3 High_conserved miR-124/124ab/506 chr11:5528779 7-mer-m8 27 3pUTR UBQLN3 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr11:5529945 8-mer 24 CDS UBQLN3 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr11:5531173 7-mer-m8 18 5pUTR UBQLN3 High_conserved miR-10abc/10a-5p chr11:5529424 7-mer-m8 20 CDS UBQLN3 Medium_conserved miR-504/4725-5p chr11:5529197 7-mer-m8 42 CDS UBQLN3 Medium_conserved miR-539/539-5p chr11:5530681 8-mer 58 CDS UBQLN3 Medium_conserved miR-873 chr11:5529549 7-mer-A1 40 CDS UBQLN3 Medium_conserved miR-874 chr11:5530754 7-mer-m8 44 CDS UBQLN3 Medium_conserved miR-875-5p chr11:5529112 8-mer 13 CDS UBQLN3 Medium_conserved miR-876-5p/3167 chr11:5529064 7-mer-A1 13 CDS UBQLN3 Medium_conserved miR-136 chr11:5529897 7-mer-A1 16 CDS UBQLN3 Medium_conserved miR-296-3p chr11:5530173 7-mer-m8 42 CDS UBQLN3 Medium_conserved miR-320abcd/4429 chr11:5529553 7-mer-m8 29 CDS UBQLN3 Medium_conserved miR-324-5p chr11:5529811 7-mer-A1 20 CDS UBQLN3 Medium_conserved miR-342-3p chr11:5528624 7-mer-m8 7 3pUTR UBQLN3 Medium_conserved miR-346 chr11:5530129 8-mer 58 CDS UBQLN3 Medium_conserved miR-361-5p chr11:5529935 7-mer-A1 7 CDS UBQLN3 Medium_conserved miR-374ab chr11:5528725 7-mer-A1 11 3pUTR UBQLN3 Medium_conserved miR-374ab chr11:5529768 8-mer 7 CDS UBQLN3 Medium_conserved miR-376abd/376b-3p chr11:5528708 7-mer-A1 0 3pUTR UBQLN3 Medium_conserved miR-376abd/376b-3p chr11:5529757 7-mer-m8 42 CDS UBQLN3 Medium_conserved miR-376c/741-5p chr11:5530016 7-mer-A1 18 CDS UBQLN3 Medium_conserved miR-377 chr11:5528625 7-mer-m8 20 3pUTR UBQLN3 Medium_conserved miR-378/422a/378bcdefhi chr11:5529978 7-mer-m8 20 CDS UBQLN3 Medium_conserved miR-378/422a/378bcdefhi chr11:5530737 7-mer-m8 27 CDS UBQLN3 Medium_conserved miR-384/384-3p chr11:5529716 7-mer-m8 20 CDS UBQLN3 Medium_conserved miR-125a-3p/1554 chr11:5529806 7-mer-A1 7 CDS UBQLN3 Medium_conserved miR-448/448-3p chr11:5530195 7-mer-m8 40 CDS UBQLN3 Medium_conserved miR-485-5p/1698/1703/1962 chr11:5529602 7-mer-m8 27 CDS UBQLN3 Medium_conserved miR-486-5p/3107 chr11:5529293 7-mer-A1 13 CDS UBQLN3 Medium_conserved miR-491-5p chr11:5529538 7-mer-A1 22 CDS UBQLN3 Medium_conserved miR-491-5p chr11:5530728 7-mer-m8 36 CDS UBQLN3 Medium_conserved miR-491-5p chr11:5530812 8-mer 49 5pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score UBQLN3 RAID00231999 hsa-miR-124-3p miRNA MIMAT0000422 UBQLN3 mRNA 50613 Prediction 0.2202 UBQLN3 RAID00472522 hsa-miR-140-5p miRNA MIMAT0000431 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00489625 hsa-miR-23b-3p miRNA MIMAT0000418 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00587545 hsa-miR-590-5p miRNA MIMAT0003258 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00591560 hsa-miR-216a-5p miRNA MIMAT0000273 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00666772 hsa-miR-377-3p miRNA MIMAT0000730 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00772604 hsa-miR-1301-3p miRNA MIMAT0005797 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00837052 hsa-miR-8085 miRNA MIMAT0031012 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00839580 hsa-miR-3125 miRNA MIMAT0014988 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00892619 hsa-miR-155-5p miRNA MIMAT0000646 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID00962096 hsa-miR-374a-5p miRNA MIMAT0000727 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01078157 hsa-miR-3201 miRNA MIMAT0015086 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01362400 hsa-miR-4742-3p miRNA MIMAT0019873 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01430989 hsa-miR-424-3p miRNA MIMAT0004749 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01596396 hsa-miR-9-5p miRNA MIMAT0000441 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01748249 hsa-miR-23a-3p miRNA MIMAT0000078 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01760525 hsa-miR-362-3p miRNA MIMAT0004683 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01871595 hsa-miR-6836-3p miRNA MIMAT0027575 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01903199 hsa-miR-513c-5p miRNA MIMAT0005789 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01928073 hsa-miR-4999-5p miRNA MIMAT0021017 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01930232 hsa-miR-4471 miRNA MIMAT0018998 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID01991790 hsa-miR-3916 miRNA MIMAT0018190 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID02137515 hsa-miR-374b-5p miRNA MIMAT0004955 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID02559015 hsa-miR-6859-5p miRNA MIMAT0027618 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID02828116 hsa-miR-185-5p miRNA MIMAT0000455 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID02996493 hsa-miR-6731-5p miRNA MIMAT0027363 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03011218 hsa-miR-376b-3p miRNA MIMAT0002172 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03155521 hsa-miR-6750-5p miRNA MIMAT0027400 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03200554 hsa-miR-6822-5p miRNA MIMAT0027544 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03216820 hsa-miR-4463 miRNA MIMAT0018987 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03312199 hsa-miR-1227-5p miRNA MIMAT0022941 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03326991 hsa-miR-5047 miRNA MIMAT0020541 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03328525 hsa-miR-8059 miRNA MIMAT0030986 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03365759 hsa-miR-5582-5p miRNA MIMAT0022279 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03462160 hsa-miR-4460 miRNA MIMAT0018982 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03464833 hsa-miR-376a-3p miRNA MIMAT0000729 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03535185 hsa-miR-514b-5p miRNA MIMAT0015087 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03632544 hsa-miR-342-3p miRNA MIMAT0000753 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03666673 hsa-miR-5002-5p miRNA MIMAT0021023 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID03765604 hsa-miR-26b-5p miRNA MIMAT0000083 UBQLN3 mRNA 50613 Microarray 0.5483 UBQLN3 RAID03846689 hsa-miR-506-3p miRNA MIMAT0002878 UBQLN3 mRNA 50613 Prediction 0.2202 UBQLN3 RAID03846861 hsa-miR-197-3p miRNA MIMAT0000227 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID04010551 hsa-miR-6847-5p miRNA MIMAT0027594 UBQLN3 mRNA 50613 Prediction 0.1828 UBQLN3 RAID04050951 hsa-miR-548an miRNA MIMAT0019079 UBQLN3 mRNA 50613 Prediction 0.1828