DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIM60 3'UTR 39478596b8 BA113738 NM_152620 chr4:166182091-166182346:+ TRIM60 3'UTR 86330b2237 BA113739 NM_152620 chr4:166182091-166182346:+ TRIM60 5'UTR 39478596b8 CA178559 NM_152620 chr4:166172601-166180674:+ TRIM60 5'UTR 86330b2237 CA178560 NM_152620 chr4:166179800-166180674:+

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence TRIM60; RNF129; RNF33 ATTTA 7-1422 1474-1478 TRIM60; RNF129; RNF33 WWATTTAWW 7-1422 1472-1480

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000088 hsa-miR-30a* 166655 TRIM60 cgACGUUUGUAG-GCUGACUUUc | :||:: |: | ||||||| ucUUUAAGUUUUACCACUGAAAa 2 21 72 94 [hg19:4:165962712-165962734:+] 0.4314 151 7 -11.91 -0.4452 MIMAT0004505 hsa-miR-32* 166655 TRIM60 uuuaUAGUGUGUGUGAUUUAAc ||: : | | ||||||| gucgAUUUUUCUC-CUAAAUUu 2 19 100 120 [hg19:4:165962740-165962760:+] 0.4544 144 7 -5.71 -0.6263 MIMAT0004514 hsa-miR-29b-1* 166655 TRIM60 agAUUU--GGUGGUAUAC-UUUGGUCg |||: ::|||| || ||||||| uuUAAGUUUUACCA-CUGAAAACCAGa 2 23 74 99 [hg19:4:165962714-165962739:+] 0.4314 154 7 -18.91 -0.8786 MIMAT0004543 hsa-miR-192* 166655 TRIM60 gacacuggauaccuuAACCGUc |||||| uuuucuccuaaauuuUUGGCAa 2 8 106 127 [hg19:4:165962746-165962767:+] 0.4544 120 6 -11.73 -0.1196 MIMAT0000228 hsa-miR-198 166655 TRIM60 cuUGGA-UAGAGGGGAGACCUGg |::| ||||| ::||||||| aaAUUUAAUCUCAUUUCUGGACu 2 21 50 72 [hg19:4:165962690-165962712:+] 0.4084 167 7 -25.50 -0.7157 MIMAT0004551 hsa-miR-30d* 166655 TRIM60 cgucGUUUGUAG-ACUGACUUUc :||:: |: ||||||| ucuuUAAGUUUUACCACUGAAAa 2 19 72 94 [hg19:4:165962712-165962734:+] 0.4314 141 7 -8.49 -0.4452 MIMAT0004571 hsa-miR-200b* 166655 TRIM60 agguuacgacgggucAUUCUAc |||||| aggugcuuugauuucUAAGAUa 2 8 180 201 [hg19:4:165962820-165962841:+] 0.4984 120 6 -9.03 -0.3556 MIMAT0004600 hsa-miR-144* 166655 TRIM60 gaAUGUCAUAUA--CUAC-UAUAGg | || ||||| ||| ||||| cuUUCA-UAUAUUCUAUGAAUAUCa 2 21 150 173 [hg19:4:165962790-165962813:+] 0.4984 121 0 -9.40 -1.2604 MIMAT0004671 hsa-miR-194* 166655 TRIM60 gucuauugucgucggGGUGACc |||||| acucuuuaaguuuuaCCACUGa 2 8 70 91 [hg19:4:165962710-165962731:+] 0.4314 120 6 -11.89 -0.1146 MIMAT0001620 hsa-miR-200a* 166655 TRIM60 agguCGUGACAGGCCAUUCUAc || :|| :: |||||| agguGCUUUGAUUUCUAAGAUa 2 19 180 201 [hg19:4:165962820-165962841:+] 0.4984 122 6 -10.13 -0.3613 MIMAT0000693 hsa-miR-30e* 166655 TRIM60 cgACAUUUGUAG-GCUGACUUUc | |||:: |: | ||||||| ucUUUAAGUUUUACCACUGAAAa 2 21 72 94 [hg19:4:165962712-165962734:+] 0.4314 155 7 -11.63 -0.4452 MIMAT0000731 hsa-miR-378* 166655 TRIM60 uguguccuggaccuCAGUCCuc |||||| uaugaauaucaauuGUCAGGug 3 9 163 184 [hg19:4:165962803-165962824:+] 0.4984 120 0 -11.66 -0.1124 MIMAT0000751 hsa-miR-330-3p 166655 TRIM60 agagacgucCGGCACACGAAACg |:| |||||||| auaucaauuGUCAGGUGCUUUGa 2 15 168 190 [hg19:4:165962808-165962830:+] 0.4984 150 7 -16.28 -1.0361 MIMAT0002812 hsa-miR-492 166655 TRIM60 uuCUUAGAACAGGG---CGUCCAGGa ||||: |||: | || |||| uaGAAUUAUGUUACUUAACAUGUCCa 2 22 210 235 [hg19:4:165962850-165962875:+] 0.4828 124 0 -13.59 -0.1030 MIMAT0002858 hsa-miR-520g 166655 TRIM60 ugugagauuucccuucGUGAAAca |||||| aagauguucauaaugcCACUUUca 3 9 132 155 [hg19:4:165962772-165962795:+] 0.4764 120 0 -6.53 -0.1603 MIMAT0002867 hsa-miR-520h 166655 TRIM60 ugagauuucccuucGUGAAAca |||||| gauguucauaaugcCACUUUca 3 9 134 155 [hg19:4:165962774-165962795:+] 0.4764 120 0 -4.43 -0.1603 MIMAT0004794 hsa-miR-551b* 166655 TRIM60 ccAGAGUGGGUGCGAACUAAAg | ||| ::| :||||||| auUGUCAGGUGC-UUUGAUUUc 2 21 174 194 [hg19:4:165962814-165962834:+] 0.4984 150 7 -14.73 -0.7663 MIMAT0003235 hsa-miR-570 166655 TRIM60 cguuuccauuaacgACAAAAGc ||||||| cauguccaauaaaaUGUUUUCa 2 9 228 249 [hg19:4:165962868-165962889:+] 0.4672 140 7 -6.89 -1.3146 MIMAT0003241 hsa-miR-576-5p 166655 TRIM60 uuucugcaccucuuuAAUCUUa |||||| cuaagauaaaauauuUUAGAAu 2 8 194 215 [hg19:4:165962834-165962855:+] 0.4984 120 6 -7.59 -0.1548 MIMAT0003251 hsa-miR-548a-3p 166655 TRIM60 cgUUUUCAUUAACGGUCAAAAc | ::|| | :||||||| aaAUGGGUCUGUUUCAGUUUUu 2 21 10 31 [hg19:4:165962650-165962671:+] 0.4192 148 7 -8.10 -0.3416 MIMAT0003285 hsa-miR-548c-3p 166655 TRIM60 cgUUUUCAUUAACUCUAAAAAc |||| |: ||||||| ugAAAACCAGAGUCGAUUUUUc 2 21 89 110 [hg19:4:165962729-165962750:+] 0.4544 148 7 -4.92 -0.3771 MIMAT0003321 hsa-miR-651 166655 TRIM60 guUUUCAGUU-CGAAUAGGAUUu |:||||:| :|| |||||| ccAGAGUCGAUUUUUCUCCUAAa 2 21 95 117 [hg19:4:165962735-165962757:+] 0.4544 139 6 -18.13 -0.1898 MIMAT0003338 hsa-miR-660 166655 TRIM60 guugaGGCUAUACGUUACCCAu |:|:|| ||||||| -ggaaCUGGUA---AAUGGGUc 2 18 1 18 [hg19:4:165962641-165962658:+] 0.4192 145 7 -15.37 -0.2174 MIMAT0005799 hsa-miR-1283 166655 TRIM60 ucuuucgcgAAAG---GAAACAUCu |||| :||||||| augggucugUUUCAGUUUUUGUAGg 2 14 12 36 [hg19:4:165962652-165962676:+] 0.4156 144 7 -16.43 -0.1873 MIMAT0004185 hsa-miR-802 166655 TRIM60 uguuccuaCUUAGAAACAAUGAc |||| | ||||||| auauuuuaGAAU-UAUGUUACUu 2 16 204 225 [hg19:4:165962844-165962865:+] 0.4984 153 7 -9.44 -1.1577 MIMAT0004918 hsa-miR-892b 166655 TRIM60 agaugggucUUUCCUCGGUCAc || ||||||| uuuguagguAACUUAGCCAGUa 2 14 29 50 [hg19:4:165962669-165962690:+] 0.3819 141 7 -13.21 -1.0472 MIMAT0004946 hsa-miR-744* 166655 TRIM60 uccaacuccAAUCACCGUUGuc || ||||||| ucuccuaaaUUUUUGGCAACua 3 14 109 130 [hg19:4:165962749-165962770:+] 0.4544 129 0 -9.38 -0.1944 MIMAT0005874 hsa-miR-548e 166655 TRIM60 acgUUUUCA-UCAGAGUCAAAAa | ::|| ||:|||||||| uaaAUGGGUCUGUUUCAGUUUUu 2 20 9 31 [hg19:4:165962649-165962671:+] 0.4192 158 7 -15.55 -0.3416 MIMAT0005895 hsa-miR-548f 166655 TRIM60 uuuucauUAAUGUCAAAAa :|| ||||||| ugggucuGUUUCAGUUUUu 2 13 13 31 [hg19:4:165962653-165962671:+] 0.3554 148 7 -9.15 -0.2503 MIMAT0005910 hsa-miR-1259 166655 TRIM60 uuuucgAUU-CAGU---AGUAUAUa ||| | || ||||||| uguucaUAAUGCCACUUUCAUAUAu 2 16 136 160 [hg19:4:165962776-165962800:+] 0.4984 141 7 -6.45 -1.0789 MIMAT0005948 hsa-miR-664* 166655 TRIM60 uagguuaguaaaagGGAUCGGUCa |:||||||| guuuuuguagguaaCUUAGCCAGu 2 11 26 49 [hg19:4:165962666-165962689:+] 0.3819 146 7 -17.05 -0.8686 MIMAT0009978 hsa-miR-2053 166655 TRIM60 cauuuAUCUCCA---AAUUAAUUGUg |||| | ||| |||||| uauuuUAGAAUUAUGUUACUUAACAu 2 19 205 230 [hg19:4:165962845-165962870:+] 0.4828 125 6 -6.53 -0.1214 MIMAT0014991 hsa-miR-3128 166655 TRIM60 uacucUCAAAAA-----A-UGAA-CGGUCu ||||||| | |||| ||||| guuucAGUUUUUGUAGGUAACUUAGCCAGu 2 19 20 49 [hg19:4:165962660-165962689:+] 0.3819 120 0 -15.47 -0.8521 MIMAT0015006 hsa-miR-3138 166655 TRIM60 ugAGGGAGAUGGAGUG-ACAGGUgu |: : :|||:| || |||||| aaUUAUGUUACUUAACAUGUCCAau 3 23 213 237 [hg19:4:165962853-165962877:+] 0.4828 141 0 -17.15 -0.1002 MIMAT0015009 hsa-miR-548t 166655 TRIM60 guuuuuGGUGCUA--GUGAAAac :||: || |||||| agauguUCAUAAUGCCACUUUca 3 16 133 155 [hg19:4:165962773-165962795:+] 0.4764 126 0 -8.89 -0.1634 MIMAT0015016 hsa-miR-3145 166655 TRIM60 guuAAGGUUUGUGAG-U-UUUAUAGa ||:|| |:|:|| | :|||||| cacUUUCAUAUAUUCUAUGAAUAUCa 2 22 148 173 [hg19:4:165962788-165962813:+] 0.4984 151 6 -14.65 -0.3015 MIMAT0015037 hsa-miR-3163 166655 TRIM60 cagaaugacgggaGUAAAAUau :|||||| uucuaagauaaaaUAUUUUAga 3 10 192 213 [hg19:4:165962832-165962853:+] 0.4984 121 0 -6.07 -0.1230 MIMAT0015081 hsa-miR-548x 166655 TRIM60 acuuucauUAACGUCAAAAAu :|| |||||||| augggucuGUUUCAGUUUUUg 2 14 12 32 [hg19:4:165962652-165962672:+] 0.4192 153 7 -12.15 -0.2072 MIMAT0016890 hsa-miR-4261 166655 TRIM60 acccagggACAAAGGa |||||:| caauaaaaUGUUUUCa 2 9 234 249 [hg19:4:165962874-165962889:+] 0.4672 124 0 -5.33 -0.1579 MIMAT0016892 hsa-miR-4266 166655 TRIM60 ccgguuccGGAGGAUc :|||||| ucgauuuuUCUCCUAa 2 9 101 116 [hg19:4:165962741-165962756:+] 0.4544 124 6 -9.98 -0.1967 MIMAT0016898 hsa-miR-4263 166655 TRIM60 ccgGUUCCGU-GAAUCUUa :|| :| :|||||| agaUAAAAUAUUUUAGAAu 2 16 197 215 [hg19:4:165962837-165962855:+] 0.4984 126 6 -6.50 -0.1519 MIMAT0016904 hsa-miR-4276 166655 TRIM60 cguguacucaGUGACUc |||||| uaaguuuuacCACUGAa 2 8 76 92 [hg19:4:165962716-165962732:+] 0.4314 120 6 -7.12 -0.1157 MIMAT0016912 hsa-miR-4282 166655 TRIM60 aggaccuacGUUUAAAAu :||||||| uuuuucuccUAAAUUUUu 2 10 105 122 [hg19:4:165962745-165962762:+] 0.4544 141 7 -4.21 -0.5758 MIMAT0000087 hsa-miR-30a 166655 TRIM60 gaAGGUCAGCUCCUACAAAUGu |||| | | |||||| | ugUCCAAU--AAAAUGUUUUCa 2 21 230 249 [hg19:4:165962870-165962889:+] 0.4672 121 0 -8.68 -0.1534 MIMAT0000416 hsa-miR-1 166655 TRIM60 uauGUAUGAAGAAAUGUA-AGGu :||::| ||| |||| ||| aauUAUGUUACUUAACAUGUCCa 2 20 213 235 [hg19:4:165962853-165962875:+] 0.4828 131 0 -13.53 -1.2722 MIMAT0000460 hsa-miR-194 166655 TRIM60 agguguaccucaacgACAAUGu |||||| aauauuuuagaauuaUGUUACu 2 8 203 224 [hg19:4:165962843-165962864:+] 0.4984 120 6 -7.19 -0.1151 MIMAT0000462 hsa-miR-206 166655 TRIM60 gguGUGUGAAGGAAUGUA-AGGu :|:::| |:| |||| ||| aauUAUGUUACUUAACAUGUCCa 2 20 213 235 [hg19:4:165962853-165962875:+] 0.4828 123 0 -12.32 -1.2732 MIMAT0000692 hsa-miR-30e 166655 TRIM60 gaAGGUCAGUUCCUACAAAUGu |||| | || |||||| | ugUCCAAUAAA--AUGUUUUCa 2 21 230 249 [hg19:4:165962870-165962889:+] 0.4672 129 0 -9.84 -0.1504 MIMAT0000729 hsa-miR-376a 166655 TRIM60 ugcaccuaAAAGGAGAUACUa | | :||||||| cacuuucaUAUAUUCUAUGAa 2 14 148 168 [hg19:4:165962788-165962808:+] 0.4984 145 7 -8.89 -1.1110 MIMAT0002172 hsa-miR-376b 166655 TRIM60 uuguaccuaAAAGGAGAUACUa | | :||||||| ccacuuucaUAUAUUCUAUGAa 2 14 147 168 [hg19:4:165962787-165962808:+] 0.4984 145 7 -8.89 -1.1110 MIMAT0004763 hsa-miR-488 166655 TRIM60 cugguucuuuaucgGAAAGUu |||||| uguucauaaugccaCUUUCAu 2 8 136 156 [hg19:4:165962776-165962796:+] 0.4984 120 6 -8.71 -0.1145 MIMAT0003163 hsa-miR-539 166655 TRIM60 ugugugguuccuAUUAAAGAgg |:|||||| ugucaggugcuuUGAUUUCUaa 3 11 176 197 [hg19:4:165962816-165962837:+] 0.4984 126 0 -11.19 -0.1346 MIMAT0004954 hsa-miR-543 166655 TRIM60 uucuucacguggcgcUUACAAa |||||| uaacauguccaauaaAAUGUUu 2 8 225 246 [hg19:4:165962865-165962886:+] 0.4828 120 6 -6.79 -0.1565

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G063399 TRIM60 Homo sapiens 166655

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End TRIM60; RNF129; RNF33 1 256 100 5.01 + chr4 165962640 165962896

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIM60 hsa-miR-660 beg:2 end:18 pic:3' GTTGAGGCTATACGTTACCCAT 5'& |.|.|| ||||||| &5' -----CTGGTA---AATGGGT- 3' TRIM60 hsa-miR-30astar beg:82 end:94 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& || ||||||| &5' -----------CC-ACTGAAA- 3' TRIM60 hsa-miR-30estar beg:82 end:94 pic:3' CGACATTTGTAGGCTGACTTTC 5'& || ||||||| &5' -----------CC-ACTGAAA- 3' TRIM60 ebv-miR-BART15 beg:72 end:92 pic:3' AGTTCCTTTGTTTTGGTGACTG 5'& |.||| |||||||| &5' TTAAGTTTT----ACCACTGA- 3' TRIM60 hcmv-miR-US25-2-5p beg:212 end:235 pic:3' AGTA-GGTGGACTTGT-CTGGCGA 5'& |.|| ..||.| |||| | || &5' TTATGTTACTT-AACATGTCC--- 3' TRIM60 hsa-miR-101star beg:21 end:42 pic:3' TCGTAGTCGT-GACA-CTATTGAC 5'& ||||. .||| |.||||| &5' ----TCAGTTTTTGTAGGTAACT- 3' TRIM60 hsa-miR-1276 beg:55 end:78 pic:3' ACAGAGGT--GTCCCGAGAAAT 5'& |||| | || ||||||| &5' --TCTCATTTCTGGACTCTTTA 3' TRIM60 hsa-miR-1289 beg:59 end:75 pic:3' TTTTACGTCTAAGGACCTGAGGT 5'& |||.||||||||. &5' ---------ATTTCTGGACTCT- 3' TRIM60 hsa-miR-1 beg:141 end:165 pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||.| ||||. ||.||||.| &5' ATGCC-ACTTTCATATATTCTA 3' TRIM60 hsa-miR-146a beg:9 end:32 pic:3' TTGGGTACCTT----AAGTCAAGAGT 5'& ||||. |||||||.|. &5' -----ATGGGTCTGTTTCAGTTTTT- 3' TRIM60 hsa-miR-192star beg:109 end:127 pic:3' GACACTGGATACCTTAACCGTC 5'& |||| |||||| &5' ------CCTAAATTTTTGGCA- 3' TRIM60 hsa-miR-198 beg:54 end:73 pic:3' CTTGGATAGAGGGGAGACCTGG 5'& ||||| ..|||||||. &5' ------ATCTCATTTCTGGACT 3' TRIM60 hsa-miR-206 beg:143 end:165 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& .| |||||.| ||.||||.| &5' --GC-CACTTTCATATATTCTA 3' TRIM60 hsa-miR-24-2star beg:18 end:39 pic:3' GACACAAAGTCGAGT-CATCCGT 5'& ||||||||.|. |||||.| &5' ---TGTTTCAGTTTTTGTAGGTA 3' TRIM60 hsa-miR-29astar beg:85 end:107 pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& ||||| ||||.|. .||. &5' CTGAAAACCAGAGTCGATT--- 3' TRIM60 hsa-miR-29b-1star beg:77 end:99 pic:3' AGATTTGGTGGTATACTTTGGTCG 5'& .| |||||.. ||||||| &5' -TTTTACCACTGA---AAACCAG- 3' TRIM60 hsa-miR-3126-3p beg:173 end:185 pic:3' AGACACACTGCCTACGGTCTAC 5'& ||.|||.|| &5' -------------TGTCAGGTG 3' TRIM60 hsa-miR-330-3p beg:174 end:190 pic:3' AGAGACGTCCGGCACACGAAACG 5'& |.| |||||||| &5' ---------GTCAGGTGCTTTG- 3' TRIM60 hsa-miR-4255 beg:57 end:75 pic:3' AGGTAGAGACTTGTGAC 5'& .|||.||||.|| || &5' -TCATTTCTGGACTCT- 3' TRIM60 hsa-miR-4288 beg:32 end:52 pic:3' CCTTTGAGTC-GTCTGTT 5'& || ||||.|| ||| .|| &5' GGTAACTTAGCCAG-TAA 3' TRIM60 hsa-miR-4329 beg:10 end:27 pic:3' CACCTTGATCCCAGAGTCC 5'& ||| || ||.|||| &5' -TGGGTCT---GTTTCAG- 3' TRIM60 hsa-miR-454 beg:67 end:91 pic:3' TGGGATATTCGTTATAACGTGAT 5'& ||.|| ||||. || ||||. &5' ACTCTTTAAGTTTTAC--CACTG 3' TRIM60 hsa-miR-518d-3p beg:168 end:190 pic:3' CGAGGTTT-CCCTTCGCGAAAC 5'& .||| | |.|.|||||| &5' ---TCAATTGTCAGGTGCTTTG 3' TRIM60 hsa-miR-520a-5p beg:55 end:71 pic:3' TCTTTCATGAAGGG---AGACCTC 5'& ||.| |||||| &5' ----------TCTCATTTCTGGA- 3' TRIM60 hsa-miR-520d-5p beg:17 end:36 pic:3' CTTTCCCGAAGG--GAAACATC 5'& |.||| .||||||| &5' ------GTTTCAGTTTTTGTAG 3' TRIM60 hsa-miR-524-5p beg:16 end:36 pic:3' CTCTTTCACGAAGG--GAAACATC 5'& ||.||| .||||||| &5' -------TGTTTCAGTTTTTGTAG 3' TRIM60 hsa-miR-525-5p beg:54 end:71 pic:3' TCTTTCACGTAGGG---AGACCTC 5'& |||.| |||||| &5' ---------ATCTCATTTCTGGA- 3' TRIM60 hsa-miR-548e beg:11 end:32 pic:3' ACGTTTTCAT-CAGAGTCAAAAA 5'& ..|| ||.||||||||| &5' -----GGGTCTGTTTCAGTTTTT 3' TRIM60 hsa-miR-551bstar beg:172 end:195 pic:3' CCAGAGTGGGT-GCG-AACTAAAG 5'& | .| .|| |||||||| &5' ----TTGTCAGGTGCTTTGATTTC 3' TRIM60 hsa-miR-664star beg:37 end:50 pic:3' TAGGTTAGTAAAAGGGATCGGTCA 5'& |.|||||||| &5' --------------CTTAGCCAGT 3' TRIM60 hsa-miR-760 beg:82 end:104 pic:3' AGGGGTGTCTG--GGTCTCGGC 5'& |||| || ||||||.|| &5' ---CCACTGAAAACCAGAGTCG 3' TRIM60 hsa-miR-802 beg:209 end:225 pic:3' TGTTCCTACTTAGAAACAATGAC 5'& ||||. ||||||| &5' --------GAATTA-TGTTACT- 3' TRIM60 hsa-miR-9 beg:80 end:101 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||| || || |||||.|| &5' ---TACCACT-GAAAACCAGAG- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIM60 High_conserved miR-7/7ab chr4:165962064 7-mer-m8 16 CDS TRIM60 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr4:165960708 7-mer-m8 0 5pUTR TRIM60 High_conserved miR-135ab/135a-5p chr4:165962102 7-mer-m8 16 CDS TRIM60 High_conserved miR-142-3p chr4:165961612 7-mer-A1 31 CDS TRIM60 High_conserved miR-145 chr4:165962590 7-mer-A1 22 CDS TRIM60 High_conserved miR-150/5127 chr4:165960714 7-mer-m8 2 5pUTR TRIM60 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr4:165960709 7-mer-m8 0 5pUTR TRIM60 High_conserved miR-193/193b/193a-3p chr4:165962451 7-mer-A1 16 CDS TRIM60 High_conserved miR-193/193b/193a-3p chr4:165962690 7-mer-A1 18 3pUTR TRIM60 High_conserved miR-203 chr4:165962106 8-mer 24 CDS TRIM60 High_conserved miR-204/204b/211 chr4:165960597 7-mer-m8 4 5pUTR TRIM60 High_conserved miR-214/761/3619-5p chr4:165962240 7-mer-m8 24 CDS TRIM60 High_conserved miR-216b/216b-5p chr4:165962259 7-mer-m8 16 CDS TRIM60 High_conserved miR-223 chr4:165961974 7-mer-A1 18 CDS TRIM60 High_conserved miR-24/24ab/24-3p chr4:165953246 7-mer-m8 7 5pUTR TRIM60 High_conserved miR-26ab/1297/4465 chr4:165961295 8-mer 20 CDS TRIM60 Medium_conserved miR-544/544ab/544-3p chr4:165961500 7-mer-A1 4 CDS TRIM60 Medium_conserved miR-590-3p chr4:165962470 7-mer-m8 2 CDS TRIM60 Medium_conserved miR-592/599 chr4:165961978 7-mer-m8 0 CDS TRIM60 Medium_conserved miR-615-3p chr4:165960671 7-mer-m8 0 5pUTR TRIM60 Medium_conserved miR-874 chr4:165961943 7-mer-A1 22 CDS TRIM60 Medium_conserved miR-154/872 chr4:165960617 7-mer-m8 11 5pUTR TRIM60 Medium_conserved miR-197 chr4:165961250 7-mer-A1 11 CDS TRIM60 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr4:165961789 7-mer-m8 16 CDS TRIM60 Medium_conserved miR-329/329ab/362-3p chr4:165962324 7-mer-m8 18 CDS TRIM60 Medium_conserved miR-340-5p chr4:165962513 7-mer-A1 20 CDS TRIM60 Medium_conserved miR-342-3p chr4:165953187 7-mer-m8 7 5pUTR TRIM60 Medium_conserved miR-374ab chr4:165960402 7-mer-A1 11 5pUTR TRIM60 Medium_conserved miR-374ab chr4:165960613 8-mer 11 5pUTR TRIM60 Medium_conserved miR-376abd/376b-3p chr4:165962490 7-mer-A1 16 CDS TRIM60 Medium_conserved miR-376abd/376b-3p chr4:165962808 8-mer 11 3pUTR TRIM60 Medium_conserved miR-377 chr4:165953186 7-mer-m8 7 5pUTR TRIM60 Medium_conserved miR-377 chr4:165961518 8-mer 29 CDS TRIM60 Medium_conserved miR-382 chr4:165961329 7-mer-m8 44 CDS TRIM60 Medium_conserved miR-433 chr4:165960735 7-mer-m8 0 5pUTR TRIM60 Medium_conserved miR-494 chr4:165961908 7-mer-m8 22 CDS TRIM60 Medium_conserved miR-494 chr4:165962557 7-mer-A1 4 CDS TRIM60 Medium_conserved miR-494 chr4:165962665 7-mer-A1 13 3pUTR TRIM60 Medium_conserved miR-495/1192 chr4:165962207 7-mer-A1 18 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIM60 RAID00130981 hsa-miR-6501-5p miRNA MIMAT0025458 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID00314852 hsa-miR-194-5p miRNA MIMAT0000460 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID01392112 hsa-miR-30a-5p miRNA MIMAT0000087 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID01600360 hsa-miR-376a-3p miRNA MIMAT0000729 TRIM60 mRNA 166655 Prediction 0.2202 TRIM60 RAID01645890 hsa-miR-5582-3p miRNA MIMAT0022280 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID01692486 hsa-miR-892b miRNA MIMAT0004918 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID01739722 hsa-miR-1-3p miRNA MIMAT0000416 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID01837428 hsa-miR-7849-3p miRNA MIMAT0030424 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID02156835 hsa-miR-30e-5p miRNA MIMAT0000692 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID02209454 hsa-miR-198 miRNA MIMAT0000228 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID02400799 hsa-miR-206 miRNA MIMAT0000462 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID02667022 hsa-miR-488-3p miRNA MIMAT0004763 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID02865997 hsa-miR-543 miRNA MIMAT0004954 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID02877709 hsa-miR-29b-1-5p miRNA MIMAT0004514 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID03035760 hsa-miR-6804-3p miRNA MIMAT0027509 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID03215877 hsa-miR-539-5p miRNA MIMAT0003163 TRIM60 mRNA 166655 Prediction 0.1828 TRIM60 RAID03834096 hsa-miR-376b-3p miRNA MIMAT0002172 TRIM60 mRNA 166655 Prediction 0.2202 TRIM60 RAID03879939 hsa-miR-1252-3p miRNA MIMAT0026744 TRIM60 mRNA 166655 Prediction 0.1828