SNP - dbSNP |
dbSNP | Type | Alleles | Het | Se(het) | Fxn-class | Gene Name | Assembly | Chr-pos | Sequence | Entrez Gene |
rs12022 | snp | C/T | 0.0387552 | 0.1337 | intron-variant, utr-variant-5-prime | SATB1 | GRCh38.p7 | 3:18424680 | GGACGAGTGAGAGCT[C/T]GGCGACTTTTTGGGG | 6304 |
rs913510 | snp | A/T | | | intron-variant | SATB1 | GRCh38.p7 | 3:18434773 | AAAAAAATTAAGTTC[A/T]CTTGAAATAGAGAAT | 6304 |
rs1140344 | snp | C/T | 0 | 0 | intron-variant, utr-variant-5-prime | SATB1 | GRCh38.p7 | 3:18423666 | TGCAAAGGAAATCTC[C/T]TTTTTTTTTTTTTTT | 6304 |
rs1140345 | snp | C/G/T | 0 | 0 | intron-variant, utr-variant-5-prime | SATB1 | GRCh38.p7 | 3:18423662 | AAGGAAATCTCTTTT[C/G/T]TTTTTTTTTTTATGT | 6304 |
rs1140346 | snp | G/T | 0 | 0 | intron-variant, utr-variant-5-prime | SATB1 | GRCh38.p7 | 3:18423656 | ATCTCTTTTTTTTTT[G/T]TTTTTATGTGCTGTC | 6304 |
rs1328540 | snp | G/T | 0.431029 | 0.17242 | intron-variant | SATB1 | GRCh38.p7 | 3:18409705 | GGAAAGTTTTTTAAT[G/T]TTAAAAAGGAAAGAA | 6304 |
rs1328541 | snp | G/T | 0 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18409973 | CAAAACAAAGGGCTA[G/T]TAGCATAATTATGCC | 6304 |
rs1328542 | snp | A/G | 0.388775 | 0.207946 | intron-variant | SATB1 | GRCh38.p7 | 3:18441066 | CTTCAGATATTTCAG[A/G]GAGCAGAATAAGCAT | 6304 |
rs1359994 | snp | C/T | 0.141258 | 0.225111 | intron-variant, upstream-variant-2KB | SATB1 | GRCh38.p7 | 3:18427279 | GGTTTCAGGGAAACA[C/T]GTCAGGCATTACTAG | 6304 |
rs1359995 | snp | A/G | 0.236434 | 0.249632 | intron-variant | SATB1 | GRCh38.p7 | 3:18410195 | AGACACAAAACCAAA[A/G]CACGGTAAAGAAAAT | 6304 |
rs1359996 | snp | C/T | 0.457037 | 0.140127 | intron-variant | SATB1 | GRCh38.p7 | 3:18410366 | TATGTGATGAAAAGG[C/T]TACTTGGTGAAGCTC | 6304 |
rs1359997 | snp | C/G | 0.428182 | 0.17536 | intron-variant | SATB1 | GRCh38.p7 | 3:18410391 | AAGCTCCCGGGCTCT[C/G]GGTATGAAGTCTCAC | 6304 |
rs1475469 | snp | A/C | 0.399968 | 0.200024 | intron-variant | SATB1 | GRCh38.p7 | 3:18418434 | CTAGGTCTGACAAAA[A/C]CCTTTAGGTTTACTT | 6304 |
rs2229261 | snp | A/C | 0.462273 | 0.132061 | synonymous-codon | SATB1 | GRCh38.p7 | 3:18386432 | CATGGGTCCTGCCCC[A/C]CTCATCAGCACACCA | 6304 |
rs3838737 | in-del | -/A | 0.401037 | 0.199218 | intron-variant, utr-variant-5-prime | SATB1 | GRCh38.p7 | 3:18423743 | TTTTTTTTTTTAATT[-/A]AAAAAAAAAAAATAA | 6304 |
rs3892469 | snp | G/T | 0.0456336 | 0.143994 | intron-variant | SATB1 | GRCh38.p7 | 3:18415814 | TTTTGTGTGTGTGGG[G/T]GGGGGGATTGCTTTT | 6304 |
rs3922895 | snp | A/T | 0.190833 | 0.242898 | intron-variant | SATB1 | GRCh38.p7 | 3:18361099 | TCTATGACCCTTTTT[A/T]AATAGCTCTTTACCA | 6304 |
rs3935618 | snp | A/G | 0.362941 | 0.223034 | utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18347718 | TTAACATTTTGCTTA[A/G]TAAGTAGAGATAGGA | 6304 |
rs4129096 | snp | A/C | 0.414905 | 0.187899 | intron-variant, utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18359129 | ACAAATGATTTGCAC[A/C]TTTTTATCTGATTAA | 6304 |
rs4131280 | snp | C/T | 0.422158 | 0.181278 | intron-variant | SATB1 | GRCh38.p7 | 3:18373078 | GGATACAGCTTCTGT[C/T]TCCCTGGGACCCACT | 6304 |
rs4131281 | snp | A/T | 0.257732 | 0.24988 | intron-variant | SATB1 | GRCh38.p7 | 3:18373069 | TTCTGTTTCCCTGGG[A/T]CCCACTTGCCTGGAA | 6304 |
rs4973715 | snp | C/T | 0.207253 | 0.246318 | intron-variant | SATB1 | GRCh38.p7 | 3:18428682 | CAAATACATGAACTA[C/T]TTAACATGTGGATGC | 6304 |
rs4973716 | snp | A/T | 0.0770498 | 0.180522 | intron-variant | SATB1 | GRCh38.p7 | 3:18436162 | TCCAAATCTTAGAGT[A/T]CTTTTCAAACAATGT | 6304 |
rs5846985 | in-del | -/A | 0.364193 | 0.222396 | intron-variant | SATB1 | GRCh38.p7 | 3:18419289 | TGCTAGTGTTTGGCG[-/A]AGAGTTCCAACTACA | 6304 |
rs5846986 | in-del | -/A | 0.493658 | 0.0559517 | intron-variant | SATB1 | GRCh38.p7 | 3:18432804 | CATATAAACATTTTC[-/A]AAAAAAAAAAAACAA | 6304 |
rs6550461 | snp | A/G | 0.321053 | 0.23969 | intron-variant, upstream-variant-2KB | SATB1 | GRCh38.p7 | 3:18427031 | AATCTTGGCACACAA[A/G]CCCAAGCCTTGAGCA | 6304 |
rs6550554 | snp | C/G | 0.497722 | 0.0336691 | intron-variant | SATB1 | GRCh38.p7 | 3:18431721 | ACTTGGAAAAGCTAA[C/G]CTGTTGTATGAACCA | 6304 |
rs6577640 | snp | C/T | 0.0573587 | 0.15934 | intron-variant | SATB1 | GRCh38.p7 | 3:18356190 | ACAACACAAATCCTG[C/T]AAAGTTATGTATTGT | 6304 |
rs6577641 | snp | C/T | 0.353371 | 0.227628 | intron-variant | SATB1 | GRCh38.p7 | 3:18356357 | AAACCTAAGACTGTA[C/T]GAAATAAATAACATT | 6304 |
rs6762753 | snp | A/G | 0.333491 | 0.235646 | intron-variant, utr-variant-5-prime | SATB1 | GRCh38.p7 | 3:18423951 | CTAACCTCAGAGAAC[A/G]GGGTTTGCGATGGGG | 6304 |
rs6768993 | snp | A/G | 0.0482946 | 0.147699 | upstream-variant-2KB, intron-variant | SATB1 | GRCh38.p7 | 3:18438860 | GGGGCGGGCAGCTTA[A/G]GTCCACATAGGTACT | 6304 |
rs6772650 | snp | C/T | 0.0547245 | 0.156101 | intron-variant | SATB1 | GRCh38.p7 | 3:18417872 | GGATAAAGGAATCTG[C/T]ATAGATTTGGTGTGC | 6304 |
rs6773795 | snp | G/T | 0.000399281 | 0.0141238 | intron-variant | SATB1 | GRCh38.p7 | 3:18442135 | ATAACTATTCAGACT[G/T]TTGGAAGTTATTTAG | 6304 |
rs6773825 | snp | A/G | 0 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18415936 | ATTGAAGGTCGACCA[A/G]AGAGAAATGCTTCAT | 6304 |
rs6780734 | snp | A/G | 0.0283406 | 0.115616 | intron-variant | SATB1 | GRCh38.p7 | 3:18417925 | CAATACAGTAACTCA[A/G]TAGCTAGATGATTAA | 6304 |
rs6786190 | snp | C/T | 0.358515 | 0.225221 | intron-variant | SATB1 | GRCh38.p7 | 3:18422926 | CAATCTAAAGTATCA[C/T]ATAGGTCATGAAAAA | 6304 |
rs6802662 | snp | C/T | 0.207253 | 0.246318 | intron-variant | SATB1 | GRCh38.p7 | 3:18430529 | CCACCCTTACCCCTG[C/T]ACCTATATTATATAA | 6304 |
rs6806044 | snp | G/T | 0.0726307 | 0.176182 | intron-variant | SATB1 | GRCh38.p7 | 3:18417339 | ATTAACAGTGCATTT[G/T]CCAAAAGCAATGAAT | 6304 |
rs6808523 | snp | A/G | 0.213333 | 0.247296 | intron-variant | SATB1 | GRCh38.p7 | 3:18430796 | TAGCGATCAAAAGTT[A/G]TTTCCCTAATTACTT | 6304 |
rs7426741 | snp | A/G | 0.0418186 | 0.138422 | utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18345841 | GAGAATATTGTGACA[A/G]TCAAAGACCTTAATA | 6304 |
rs7427289 | snp | A/T | 0.359787 | 0.224604 | utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18346119 | CACACAACTAGGACA[A/T]ACATATTAGTTACCT | 6304 |
rs7429127 | snp | A/C | 0 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18420323 | AACATTACCAAACTT[A/C]TACATAAGATGTCCA | 6304 |
rs7432238 | snp | G/T | 0.348574 | 0.229746 | intron-variant | SATB1 | GRCh38.p7 | 3:18354833 | GGTTTAACAAATATT[G/T]CAGAAAAAGAGCCCC | 6304 |
rs7621961 | snp | A/G | 0.189261 | 0.242509 | intron-variant, utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18358372 | TATAACATTATGAGA[A/G]GCCCCCACCATTAAC | 6304 |
rs7622439 | snp | A/G | 0.00438332 | 0.0466095 | intron-variant, utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18358850 | TATTTAAGAGACTCA[A/G]TATCTTAGCCAAAAA | 6304 |
rs7627392 | snp | A/C | 0.425123 | 0.178415 | intron-variant | SATB1 | GRCh38.p7 | 3:18351200 | AGTGAGCTCTGCCCA[A/C]GACCATGGTTAGTAG | 6304 |
rs7635386 | snp | A/G | 0.376195 | 0.215812 | intron-variant, utr-variant-3-prime | SATB1 | GRCh38.p7 | 3:18358711 | TATGTTTATTTTTCA[A/G]AGTGTGGTTTCTGAT | 6304 |
rs7641608 | snp | C/T | 0.422158 | 0.181278 | intron-variant | SATB1 | GRCh38.p7 | 3:18411047 | AACATATTTGAGATC[C/T]CAGGATGCTGTGAAT | 6304 |
rs7642423 | snp | C/T | 0.497776 | 0.0332724 | intron-variant | SATB1 | GRCh38.p7 | 3:18431277 | TGCTATCTTCTTTAA[C/T]GTGCAGCTTGATTTC | 6304 |
rs7645344 | snp | G/T | 0.457853 | 0.138915 | intron-variant | SATB1 | GRCh38.p7 | 3:18409394 | CAATTCTGTTGTAGA[G/T]TATACACATTATAAT | 6304 |
rs7645355 | snp | C/G | 0.499961 | 0.0043928 | upstream-variant-2KB, intron-variant | SATB1, SATB1-AS1 | GRCh38.p7 | 3:18445666 | GTCAGGTGAGAGGCC[C/G]CGAAGCACCCCCACC | 6304 |
rs9283052 | snp | C/G | 0.234692 | 0.249531 | intron-variant | SATB1 | GRCh38.p7 | 3:18396700 | AGTGCCCATCCATGG[C/G]GGCTGGGGGTTAGAG | 6304 |
rs9284841 | snp | C/T | 0.428484 | 0.175052 | intron-variant | SATB1 | GRCh38.p7 | 3:18373962 | CAAACAGAATTTTCA[C/T]CAGCTAGTTGCTTTA | 6304 |
rs9284842 | snp | A/G | 0.422 | 0.181428 | intron-variant | SATB1 | GRCh38.p7 | 3:18392607 | TACACATATATATAC[A/G]TATATATATAATTTG | 6304 |
rs9284843 | snp | C/T | 0.237014 | 0.249662 | intron-variant | SATB1 | GRCh38.p7 | 3:18398103 | AAAAAGATGACCTAT[C/T]GTGACTTATCTTTAT | 6304 |
rs9284844 | snp | A/G | 0.233235 | 0.249437 | intron-variant | SATB1 | GRCh38.p7 | 3:18405608 | CTGCCTAAAAATTGG[A/G]GGTAAAATACCTCCT | 6304 |
rs9284845 | snp | C/T | 0.0126979 | 0.078662 | intron-variant | SATB1 | GRCh38.p7 | 3:18438278 | TAGCTTCCAGGAAAA[C/T]TGCATCTAAAGAATG | 6304 |
rs9310548 | snp | C/T | 0.448836 | 0.15154 | intron-variant | SATB1 | GRCh38.p7 | 3:18362027 | GTATTAGTTTTGTAA[C/T]AAAAATATATAGCAA | 6304 |
rs9310549 | snp | C/T | 0.101301 | 0.200969 | intron-variant | SATB1 | GRCh38.p7 | 3:18362525 | GCAAAGTCCAACAAT[C/T]TGTATTCATAATGAT | 6304 |
rs9310550 | snp | A/C | 0.5 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18362881 | AAAAAAAAAAAAAAA[A/C]CCAAAACCCCAAATA | 6304 |
rs9310551 | snp | C/G | 0.288906 | 0.246954 | intron-variant | SATB1 | GRCh38.p7 | 3:18365682 | AGCACATAACCGTCT[C/G]ATAACTTTATATTAT | 6304 |
rs9310552 | snp | G/T | 0.497959 | 0.0318836 | intron-variant | SATB1 | GRCh38.p7 | 3:18371197 | AGGCAACTGGAATAG[G/T]TGAATCACAAAATCA | 6304 |
rs9310553 | snp | A/G | 0.421842 | 0.181577 | intron-variant | SATB1 | GRCh38.p7 | 3:18374140 | ATGTAACAATTCAGT[A/G]TACAAGGCAAGGCCT | 6304 |
rs9310554 | snp | A/G | 0.25801 | 0.249872 | intron-variant | SATB1 | GRCh38.p7 | 3:18376589 | GTAGGTGGGGGGGGG[A/G]AGTGAGACCAGGACA | 6304 |
rs9310555 | snp | A/G | 0.428937 | 0.17459 | intron-variant | SATB1 | GRCh38.p7 | 3:18377575 | TCAGCTGTAATTCAG[A/G]GTTGGACAAGTTGTA | 6304 |
rs9310556 | snp | C/T | 0.233235 | 0.249437 | intron-variant | SATB1 | GRCh38.p7 | 3:18377609 | AATCTGTGTGTCTTG[C/T]ATACTCTACAGAAAA | 6304 |
rs9310557 | snp | C/T | 0.428937 | 0.17459 | intron-variant | SATB1 | GRCh38.p7 | 3:18378061 | AAATAATCCTAGACA[C/T]AGAGGCCTCTCCGTG | 6304 |
rs9310558 | snp | A/T | 0.422 | 0.181428 | intron-variant | SATB1 | GRCh38.p7 | 3:18379048 | ATGTTTCACAATATT[A/T]AATAAAATATTGCTG | 6304 |
rs9310559 | snp | C/T | 0.422315 | 0.181128 | intron-variant | SATB1 | GRCh38.p7 | 3:18379304 | AACTAGCCTGGAAAA[C/T]TTACATAAAAACCAT | 6304 |
rs9310560 | snp | C/G | 0.421842 | 0.181577 | intron-variant | SATB1 | GRCh38.p7 | 3:18382958 | TCATTTTTCTTCTAG[C/G]GAAAGGTTGGTATGA | 6304 |
rs9310561 | snp | C/G | 0.429688 | 0.173817 | intron-variant | SATB1 | GRCh38.p7 | 3:18391482 | CGCTGCACCCACTAA[C/G]TCGTCATCTAGCATT | 6304 |
rs9310562 | snp | C/T | 0.463989 | 0.129263 | intron-variant | SATB1 | GRCh38.p7 | 3:18392474 | TAGCATTCTTCACTA[C/T]ATAAAGGACACTTAC | 6304 |
rs9310563 | snp | C/T | 0.463881 | 0.12944 | intron-variant | SATB1 | GRCh38.p7 | 3:18393726 | CTACCATACCCAGTG[C/T]CATTCATTTATAGTC | 6304 |
rs9310564 | snp | A/G | 0.464947 | 0.127663 | intron-variant | SATB1 | GRCh38.p7 | 3:18396666 | TCTGGTATGGATGGT[A/G]AAGCAATGTGCTTAT | 6304 |
rs9310565 | snp | C/T | 0.233527 | 0.249457 | intron-variant | SATB1 | GRCh38.p7 | 3:18399785 | GGATTCCCTATCTTT[C/T]TGTGCTTTTGGGTGA | 6304 |
rs9310566 | snp | G/T | 0.241782 | 0.249865 | intron-variant | SATB1 | GRCh38.p7 | 3:18415812 | TTTTTTGTGTGTGTG[G/T]GGGGGGGGATTGCTT | 6304 |
rs9310567 | snp | A/G | 0.122411 | 0.214991 | intron-variant | SATB1 | GRCh38.p7 | 3:18431470 | GCATTCCCTTTGACA[A/G]TCTTAGGACGTAAAA | 6304 |
rs9310568 | snp | A/T | 0.121369 | 0.214369 | intron-variant | SATB1 | GRCh38.p7 | 3:18432775 | AATGGCGTATTTTTT[A/T]ACACATATTTTACCA | 6304 |
rs9310569 | snp | C/T | 0.121369 | 0.214369 | intron-variant | SATB1 | GRCh38.p7 | 3:18432849 | TTCATGTATGCCTAG[C/T]ATTGGCAGATATATA | 6304 |
rs9681161 | snp | C/T | 0.236434 | 0.249632 | intron-variant | SATB1 | GRCh38.p7 | 3:18410787 | AAGAAACATGTCATT[C/T]CAGTCCAAAAACTGT | 6304 |
rs9681343 | snp | C/T | 0.0471551 | 0.14613 | intron-variant | SATB1 | GRCh38.p7 | 3:18372646 | TTTAGGAGGCAAGAA[C/T]CTCAAAAGAAGGCAT | 6304 |
rs9682713 | snp | C/T | 0.0205511 | 0.0992634 | intron-variant | SATB1 | GRCh38.p7 | 3:18400331 | ATGCATTAATATAAA[C/T]ACTAAATGTTCATCT | 6304 |
rs9683201 | snp | C/T | 0.433382 | 0.169915 | intron-variant | SATB1 | GRCh38.p7 | 3:18402679 | TGATCTACATGCTTG[C/T]GTTTTTTGCACTACT | 6304 |
rs9712999 | snp | G/T | 0 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18395179 | CATAAAATCAATTAT[G/T]ACCCAAACTCTTTCC | 6304 |
rs9713190 | snp | C/T | 0.298651 | 0.24522 | intron-variant | SATB1 | GRCh38.p7 | 3:18366604 | CACCCTACCACATAT[C/T]AAACCAAGCCCATTC | 6304 |
rs9713269 | snp | A/G | 0.455024 | 0.143057 | intron-variant | SATB1 | GRCh38.p7 | 3:18412351 | TATTCAACACCCCAG[A/G]CAAAATCCTGGTGGC | 6304 |
rs9713288 | snp | A/C | 0.436408 | 0.16659 | intron-variant | SATB1 | GRCh38.p7 | 3:18399837 | AGGTAACTTGGAGTC[A/C]TGTCTATTTTTATTG | 6304 |
rs9713376 | snp | C/G | 0.422 | 0.181428 | intron-variant | SATB1 | GRCh38.p7 | 3:18383269 | GTCCCCAGGTGGGGT[C/G]TGACTAGCCAGGAAG | 6304 |
rs9713593 | snp | C/T | 0 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18376226 | GGATGAAGTCAAAGA[C/T]AGCAAAGGAATTATC | 6304 |
rs9713740 | snp | C/T | 0 | 0 | intron-variant | SATB1 | GRCh38.p7 | 3:18392077 | CTTTAAAACACCCTT[C/T]ATAATCCAGGGCACT | 6304 |
rs9714017 | snp | A/G | 0.113685 | 0.209567 | intron-variant | SATB1 | GRCh38.p7 | 3:18434781 | TAAGTTCACTTGAAA[A/G]AGAAAATATAAATAT | 6304 |
rs9714119 | snp | C/T | 0.498009 | 0.0314867 | intron-variant | SATB1 | GRCh38.p7 | 3:18370866 | AGGCTCTGACAGTTC[C/T]CATCCGTAGCGTCGA | 6304 |
rs9714216 | snp | C/T | 0.450231 | 0.149691 | intron-variant | SATB1 | GRCh38.p7 | 3:18362574 | AAAATAAGGTTCAAA[C/T]TGAGCTCAGCATAAT | 6304 |
rs9755860 | snp | C/G | 0.0162398 | 0.0886349 | intron-variant | SATB1 | GRCh38.p7 | 3:18377712 | GCAGCCAGCTGAGtt[C/G]agaggcaactatgct | 6304 |
rs9756467 | snp | C/T | 0.422 | 0.181428 | intron-variant | SATB1 | GRCh38.p7 | 3:18385178 | ATAACCACTTTCTAC[C/T]ATTGATGAGAATGAA | 6304 |
rs9756478 | snp | C/T | 0.422 | 0.181428 | intron-variant | SATB1 | GRCh38.p7 | 3:18385241 | GTCATATGAATATTT[C/T]GACTTTTTCTTCCAT | 6304 |
rs9756797 | snp | A/G | 0.461813 | 0.132798 | intron-variant | SATB1 | GRCh38.p7 | 3:18385985 | TACCAGCTGCAGTTC[A/G]TACTGGAAAGTATAA | 6304 |
rs9757408 | snp | A/T | 0.340784 | 0.232934 | intron-variant | SATB1 | GRCh38.p7 | 3:18384473 | GTTTTTTTTTTTTTT[A/T]AAAGCAGTTCAATGT | 6304 |
rs9757523 | snp | A/G | 0.0209421 | 0.100162 | intron-variant | SATB1 | GRCh38.p7 | 3:18375655 | ACAAAACATCATAGC[A/G]TGAGAACAGAACCTA | 6304 |
rs9758251 | snp | A/T | 0.0471551 | 0.14613 | intron-variant | SATB1 | GRCh38.p7 | 3:18377823 | GGAAAAAAAATAAAG[A/T]TCATCTAAGCAATAA | 6304 |