DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIM61 3'UTR e1ced71158 BA113740 NM_001012414 chr4:166095048-166110603:- TRIM61 5'UTR e1ced71158 CA178561 NM_001012414 chr4:166095595-166118268:- TRIM61 5'UTR 51835a313f NM_001012414 chr4:166110081-166118262:-

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004481 hsa-let-7a* 391712 TRIM61 cuuucugucaucuaACAUAUc |||||| auuauauguauuucUGUAUAa 2 8 177 197 [hg19:4:165875740-165875760:-] 0.5061 120 6 -4.16 -0.3481 MIMAT0010195 hsa-let-7a-2* 391712 TRIM61 ccuuucgauccuccGACAUGUc |||||:| aauuauauguauuuCUGUAUAa 2 9 176 197 [hg19:4:165875740-165875761:-] 0.5061 124 0 -6.92 -0.1237 MIMAT0010195 hsa-let-7a-2* 391712 TRIM61 ccuuucgauccuccgACAUGUc |||||| uauuucuguauaauaUGUACAu 2 8 185 206 [hg19:4:165875731-165875752:-] 0.5061 120 6 -7.05 -0.1451 MIMAT0004482 hsa-let-7b* 391712 TRIM61 cccuuccgucauccaACAUAUc |||||| aauuauauguauuucUGUAUAa 2 8 176 197 [hg19:4:165875740-165875761:-] 0.5061 120 6 -3.49 -0.3453 MIMAT0004486 hsa-let-7f-1* 391712 TRIM61 cccuuccguuaucuaACAUAUc |||||| aauuauauguauuucUGUAUAa 2 8 176 197 [hg19:4:165875740-165875761:-] 0.5061 120 6 -3.23 -0.3453 MIMAT0004487 hsa-let-7f-2* 391712 TRIM61 ccUUUCUGU-CAU-CUGACAUAUc || |:| ||| ||||||| guAAUUAUAUGUAUUUCUGUAUAa 2 21 174 197 [hg19:4:165875740-165875763:-] 0.5061 146 7 -8.63 -1.2936 MIMAT0004490 hsa-miR-19a* 391712 TRIM61 acaucACGUUGAUACGUUUUGa | :||: || |||||| aucuuUCUAAUAAUACAAAACu 2 18 284 305 [hg19:4:165875632-165875653:-] 0.5060 129 6 -8.08 -0.1747 MIMAT0004491 hsa-miR-19b-1* 391712 TRIM61 cgaccuacguuuggacGUUUUGa |||||| uaucuuucuaauaauaCAAAACu 2 8 283 305 [hg19:4:165875632-165875654:-] 0.5060 120 6 -8.79 -0.1731 MIMAT0004492 hsa-miR-19b-2* 391712 TRIM61 acUUUACGUUUGGACGU-UUUGa ||| :||| |||| |||| uaAAAAAUAAA-AUGCACAAACu 2 21 312 333 [hg19:4:165875604-165875625:-] 0.5060 122 0 -8.89 -0.3920 MIMAT0004492 hsa-miR-19b-2* 391712 TRIM61 acuuuacguuuggacGUUUUGa |||||| aucuuucuaauaauaCAAAACu 2 8 284 305 [hg19:4:165875632-165875653:-] 0.5060 120 6 -7.11 -0.1731 MIMAT0004495 hsa-miR-22* 391712 TRIM61 auuucgaacggugacUUCUUGa |||||| uaugcuaauuaauacAAGAACa 2 8 212 233 [hg19:4:165875704-165875725:-] 0.5061 120 6 -7.83 -0.5985 MIMAT0004500 hsa-miR-26b* 391712 TRIM61 cuCGGUUCAUUA-CCUCUUGUcc ||:|| |||| |||||| auGCUAAUUAAUACAAGAACAua 3 21 213 235 [hg19:4:165875702-165875724:-] 0.5061 143 0 -10.50 -0.2724 MIMAT0000102 hsa-miR-105 391712 TRIM61 ugguguccucagacucGUAAACu |||||| aauaaaauuuuaauuaCAUUUGu 2 8 144 166 [hg19:4:165875771-165875793:-] 0.5061 120 6 -8.30 -0.1617 MIMAT0004518 hsa-miR-16-2* 391712 TRIM61 auUUCGUCGUG-UCAU-UAUAACc || :| :|| || | |||||| cuAAUUAAUACAAGAACAUAUUGa 2 21 216 239 [hg19:4:165875698-165875721:-] 0.5061 123 6 -5.54 -1.3014 MIMAT0004557 hsa-miR-34a* 391712 TRIM61 ucccgucAUAUGAACGACUAAc || |: |||| ||| guacauaUAAAUAUGCUAAUUa 2 16 201 222 [hg19:4:165875715-165875736:-] 0.5061 123 0 -5.54 -0.1408 MIMAT0004559 hsa-miR-181c* 391712 TRIM61 cagGUGAGUUGCCAGCUACCAa :|| ||| :|||||| uaaUACAAAAC---UGAUGGUu 2 20 294 312 [hg19:4:165875625-165875643:-] 0.5060 127 6 -13.89 -0.1427 MIMAT0004570 hsa-miR-223* 391712 TRIM61 uuGAGUCGAACAGU--UUAUGUgc :|:| ||| :| |||||| ugUUUAUCUUUCUAAUAAUACAaa 3 21 279 302 [hg19:4:165875635-165875658:-] 0.5061 131 0 -7.52 -0.1037 MIMAT0004570 hsa-miR-223* 391712 TRIM61 uugaguCGAACAGUUUAUGUgc ||| |: |||||| aaauauGCUAAUU-AAUACAag 3 17 209 229 [hg19:4:165875708-165875728:-] 0.5061 126 0 -6.37 -0.1834 MIMAT0004584 hsa-let-7g* 391712 TRIM61 cguUCCGUCACCGGACAUGUc | |:| | :|||||:| uauAUGUAUU--UCUGUAUAa 2 19 179 197 [hg19:4:165875740-165875758:-] 0.5061 127 0 -7.57 -0.1225 MIMAT0004584 hsa-let-7g* 391712 TRIM61 cguuccgucaccggACAUGUc |||||| auuucuguauaauaUGUACAu 2 8 186 206 [hg19:4:165875731-165875751:-] 0.5061 120 6 -7.68 -0.1451 MIMAT0004589 hsa-miR-30b* 391712 TRIM61 cuucauuUGUAGGUGGAGGGUc :| |: |||||||| ucuuccuGCCUUGACCUCCCAa 2 16 60 81 [hg19:4:165875856-165875877:-] 0.5061 151 7 -16.16 -0.6699 MIMAT0000444 hsa-miR-126* 391712 TRIM61 gcgcaugguuuucAUUAUUAc ||||||| auguuuaucuuucUAAUAAUa 2 9 278 298 [hg19:4:165875639-165875659:-] 0.5061 140 7 -6.46 -1.0148 MIMAT0000444 hsa-miR-126* 391712 TRIM61 gcGCAUGGUUUU--CAUUAUUac :|| || | | |||||| uaUGUUCCUAUACCAUAAUAAaa 3 20 128 150 [hg19:4:165875787-165875809:-] 0.5061 126 0 -5.70 -0.2065 MIMAT0004615 hsa-miR-195* 391712 TRIM61 ccucgucgugucgguUAUAACc |||||| aauuaauacaagaacAUAUUGa 2 8 218 239 [hg19:4:165875698-165875719:-] 0.5061 120 6 -6.87 -0.4118 MIMAT0000714 hsa-miR-302b* 391712 TRIM61 cuuucgUGAAGGUACAAUUUca ||| :: |||||| uacaaaACUGAUG-GUUAAAaa 3 17 297 317 [hg19:4:165875620-165875640:-] 0.5060 122 0 -4.91 -0.1990 MIMAT0004685 hsa-miR-302d* 391712 TRIM61 cguucacggaggUA-CAAUUUca || |||||| aauacaaaacugAUGGUUAAAaa 3 11 295 317 [hg19:4:165875620-165875642:-] 0.5060 121 0 -4.95 -0.2177 MIMAT0000721 hsa-miR-369-3p 391712 TRIM61 uuucUAGUUGGUACA-UAAUAa :| |: :|||| ||||| auuuGUAAGGUAUGUAAUUAUa 2 18 161 182 [hg19:4:165875755-165875776:-] 0.5061 121 0 -7.11 -1.0059 MIMAT0000721 hsa-miR-369-3p 391712 TRIM61 uuUCUAGUUGGUACAUAAUAa ||| | |: || ||||| caAGAAC-AUAUUGAAUUAUa 2 20 226 245 [hg19:4:165875692-165875711:-] 0.5061 121 0 -5.55 -0.1119 MIMAT0004688 hsa-miR-374a* 391712 TRIM61 uuAAUGUUAUGU-UAGAC-UAUUc |||: ||::| |||| |||| aaUUAU-AUGUAUUUCUGUAUAAu 2 21 176 198 [hg19:4:165875739-165875761:-] 0.5061 121 0 -9.29 -1.0223 MIMAT0004690 hsa-miR-379* 391712 TRIM61 ucaaucaccugguacAAUGUAu |||||| auaauaaaauuuuaaUUACAUu 2 8 142 163 [hg19:4:165875774-165875795:-] 0.5061 120 6 -4.16 -0.1675 MIMAT0000735 hsa-miR-380 391712 TRIM61 uucuacaccugguaUAAUGUAu ||||||| auaauaaaauuuuaAUUACAUu 2 9 142 163 [hg19:4:165875774-165875795:-] 0.5061 140 7 -5.45 -1.2346 MIMAT0000735 hsa-miR-380 391712 TRIM61 uucuACACCUGGUAUA-AUGUAu | || |: |||| ||||| uauuUCUGUAUAAUAUGUACAUa 2 19 185 207 [hg19:4:165875730-165875752:-] 0.5061 126 0 -7.93 -1.2176 MIMAT0004701 hsa-miR-338-5p 391712 TRIM61 gugAGUCGUGGUC--CUAUAACaa |:| :|| || |||||| uaaUUAAUACAAGAACAUAUUGaa 3 20 217 240 [hg19:4:165875697-165875720:-] 0.5061 130 0 -6.67 -0.2605 MIMAT0004701 hsa-miR-338-5p 391712 TRIM61 guGAGUCGUGGUCCUAUAACaa :|:|| |: | |||||| auUUUAG-AU--GUAUAUUGga 3 21 259 277 [hg19:4:165875660-165875678:-] 0.5061 123 0 -6.37 -0.1473 MIMAT0004752 hsa-miR-20b* 391712 TRIM61 gaccuuCA-CGGGUAUGAUGUCa || ||: : ||||||| ------GUAGCUGGGACUACAGa 2 17 1 17 [hg19:4:165875920-165875920,165876128-165876143:-] 0.5058 147 7 -15.94 -0.1295 MIMAT0002813 hsa-miR-493* 391712 TRIM61 uuacuuuCGGAUGGUACAUGUu |: || :||||||| uauuucuGUAUAAUAUGUACAu 2 16 185 206 [hg19:4:165875731-165875752:-] 0.5061 151 7 -10.87 -1.1635 MIMAT0002849 hsa-miR-524-5p 391712 TRIM61 cucUUUCACG--AAGGGAAACAUc ||| | : || | |||||| auaAAAUUUUAAUUACAUUUGUAa 2 20 145 168 [hg19:4:165875769-165875792:-] 0.5061 122 6 -5.76 -0.1307 MIMAT0002855 hsa-miR-520d-5p 391712 TRIM61 cuuucccgaagggAAACAUc |||||| aauuuuaauuacaUUUGUAa 2 8 149 168 [hg19:4:165875769-165875788:-] 0.5061 120 6 -7.91 -0.1333 MIMAT0002857 hsa-miR-517b 391712 TRIM61 uugugagAUUUCCCUACGUGcu |||| |||||| uaaaaaaUAAA---AUGCACaa 3 16 312 330 [hg19:4:165875607-165875625:-] 0.5060 123 0 -6.27 -0.2540 MIMAT0004777 hsa-miR-513a-3p 391712 TRIM61 ggaagagucuuuccacUUUAAAu |||||| uuccuauaccauaauaAAAUUUu 2 8 132 154 [hg19:4:165875783-165875805:-] 0.5061 120 6 -5.67 -0.1462 MIMAT0002880 hsa-miR-508-3p 391712 TRIM61 agaugagguuuuccGAUGUUAGu :||:|||| aagaacauauugaaUUAUAAUCa 2 10 227 249 [hg19:4:165875688-165875710:-] 0.5061 125 0 -8.38 -0.1016 MIMAT0003223 hsa-miR-559 391712 TRIM61 aaAACCACGUAUAAAU-GAAAu ||| | ||:|||| |||| uaUUG--GAAUGUUUAUCUUUc 2 20 271 290 [hg19:4:165875647-165875666:-] 0.5061 124 0 -10.47 -1.0011 MIMAT0003235 hsa-miR-570 391712 TRIM61 cguuUCCAUUAACG-ACA-AAAGc | |||||| : ||| |||| agguAUGUAAUUAUAUGUAUUUCu 2 19 168 191 [hg19:4:165875746-165875769:-] 0.5061 125 0 -7.44 -1.2131 MIMAT0003235 hsa-miR-570 391712 TRIM61 cgUUUCCAU-UAAC--GACAAA-AGc |:| ||| |||| ||||| || uuAGAUGUAUAUUGGAAUGUUUAUCu 2 21 262 287 [hg19:4:165875650-165875675:-] 0.5061 122 0 -8.44 -1.1194 MIMAT0003242 hsa-miR-577 391712 TRIM61 guccAUGGUUAUA-AAAUAGAu ||:::: || ||||||| uguaUAUUGGAAUGUUUAUCUu 2 18 267 288 [hg19:4:165875649-165875670:-] 0.5061 152 7 -7.65 -0.8706 MIMAT0003243 hsa-miR-578 391712 TRIM61 uguUAGGAU--CUCGUGUUCUUc || ||| | :||||||| aauAUGCUAAUUAAUACAAGAAc 2 19 210 232 [hg19:4:165875705-165875727:-] 0.5061 149 7 -9.52 -1.2576 MIMAT0003249 hsa-miR-584 391712 TRIM61 gagucaggguccguuUGGUAUu |||||| uguauauguuccuauACCAUAa 2 8 124 145 [hg19:4:165875792-165875813:-] 0.5061 120 6 -14.01 -0.2278 MIMAT0003268 hsa-miR-600 391712 TRIM61 cucguuccgagaacAGACAUUCa |:|||||| aaauuuuaauuacaUUUGUAAGg 2 10 148 170 [hg19:4:165875767-165875789:-] 0.5061 129 6 -10.86 -0.2131 MIMAT0003313 hsa-miR-643 391712 TRIM61 gauggacuCGAUCG--UAUGUUCa |||| : ||||||| auaaauauGCUAAUUAAUACAAGa 2 15 207 230 [hg19:4:165875707-165875730:-] 0.5061 145 7 -10.88 -1.3137 MIMAT0003313 hsa-miR-643 391712 TRIM61 gaUGGACUCGAUCG-UAUGUUca |:|| ||| : |||||| uuAUCU-UUCUAAUAAUACAAaa 3 21 282 303 [hg19:4:165875634-165875655:-] 0.5060 125 0 -9.58 -0.1105 MIMAT0004813 hsa-miR-411* 391712 TRIM61 ccaaucaccuggcacAAUGUAu |||||| auaauaaaauuuuaaUUACAUu 2 8 142 163 [hg19:4:165875774-165875795:-] 0.5061 120 6 -5.47 -0.1675 MIMAT0003331 hsa-miR-655 391712 TRIM61 uuucUCCA---AUUG--GUACAUAAua |||| |||: :||||||| uguaAGGUAUGUAAUUAUAUGUAUUuc 3 19 164 190 [hg19:4:165875747-165875773:-] 0.5061 132 0 -10.57 -0.1599 MIMAT0003332 hsa-miR-656 391712 TRIM61 ucUCCA-ACUGACAUAUUAUAa | || | ||||||||||| auAUGUAUUUCUGUAUAAUAUg 2 20 180 201 [hg19:4:165875736-165875757:-] 0.5061 162 7 -12.00 -0.8791 MIMAT0003332 hsa-miR-656 391712 TRIM61 ucUCCAACU-GACA---UAUUAUaa | ||| | || | |||||| gaAUGUUUAUCUUUCUAAUAAUAca 3 20 276 300 [hg19:4:165875637-165875661:-] 0.5061 125 0 -1.29 -0.1455 MIMAT0003332 hsa-miR-656 391712 TRIM61 ucuccaacugacaUAUUAUaa |||||| auguuccuauaccAUAAUAaa 3 9 129 149 [hg19:4:165875788-165875808:-] 0.5061 120 0 -0.89 -0.1426 MIMAT0005799 hsa-miR-1283 391712 TRIM61 ucuuucgcgAAAGGAAACAUcu || | |||||| aaauuuuaaUUACAUUUGUAag 3 14 148 169 [hg19:4:165875768-165875789:-] 0.5061 129 0 -5.32 -0.1043 MIMAT0009206 hsa-miR-2113 391712 TRIM61 cacugucucggUUCGUGUUUa | ||||||| uaaaaaauaaaAUGCACAAAc 2 11 312 332 [hg19:4:165875605-165875625:-] 0.5060 142 7 -7.08 -1.0121 MIMAT0004956 hsa-miR-374b* 391712 TRIM61 uuacUAU-UAUG-UUGGACGAUUc :|| |||: ||: |||||| auauGUACAUAUAAAUAUGCUAAu 2 19 197 220 [hg19:4:165875717-165875740:-] 0.5061 128 6 -11.43 -0.2189 MIMAT0004982 hsa-miR-939 391712 TRIM61 gugggggucucggagucGAGGGGu |||||| aaaauaaaaugcacaaaCUCCCC- 2 8 315 337 [hg19:4:165875600-165875622:-] 0.5060 120 6 -14.84 -0.1478 MIMAT0004983 hsa-miR-940 391712 TRIM61 ccccUCGCCCCCGGGACGGAa |||| :||||||| cucaAGCGAUCUUCCUGCCUu 2 18 51 71 [hg19:4:165875866-165875886:-] 0.5061 149 7 -21.73 -0.5556 MIMAT0004987 hsa-miR-944 391712 TRIM61 gaGUAGGCUACAUGUUAUUAAa :| :| || || |||||| uaUAAUCAAUAUA-UAUAAUUu 2 21 242 262 [hg19:4:165875675-165875695:-] 0.5061 122 6 -5.12 -0.1217 MIMAT0004450 hsa-miR-297 391712 TRIM61 guACGUG-UACGUGUGUAUGUa ||:|: || :::|||||:| ucUGUAUAAUAUGUACAUAUAa 2 20 189 210 [hg19:4:165875727-165875748:-] 0.5061 142 0 -15.26 -0.1109 MIMAT0005870 hsa-miR-1206 391712 TRIM61 cgaAUUUGUAGAUGUACUUGu ||| :| |||| |||| ugcUAAUUA-AUACAAGAACa 2 19 214 233 [hg19:4:165875704-165875723:-] 0.5061 124 0 -11.00 -0.2182 MIMAT0005910 hsa-miR-1259 391712 TRIM61 uuuucgauucaguaGUAUAUa |||||| cuguauaauauguaCAUAUAa 2 8 190 210 [hg19:4:165875727-165875747:-] 0.5061 120 6 -4.25 -0.3122 MIMAT0005937 hsa-miR-1279 391712 TRIM61 ucuuUCUUCGUUAUAcu | || |||||| aauuAUAAUCAAUAUau 3 14 239 255 [hg19:4:165875682-165875698:-] 0.5061 129 0 -2.90 -0.2481 MIMAT0005937 hsa-miR-1279 391712 TRIM61 ucuuucuucGUUAUACu :|||||| auuucuguaUAAUAUGu 2 9 186 202 [hg19:4:165875735-165875751:-] 0.5061 124 6 -5.63 -0.1197 MIMAT0005937 hsa-miR-1279 391712 TRIM61 ucuuucuucgUUAUACu |||||| uguacauauaAAUAUGc 2 8 200 216 [hg19:4:165875721-165875737:-] 0.5061 120 6 -3.46 -0.3232 MIMAT0009977 hsa-miR-2052 391712 TRIM61 uguaaugacaauaGUUUUGu |||||| cuuucuaauaauaCAAAACu 2 8 286 305 [hg19:4:165875632-165875651:-] 0.5060 120 6 -5.58 -0.1731 MIMAT0009979 hsa-miR-2054 391712 TRIM61 uuauUUAAUUUAAAUAUAAUGUc ||| |||||| |||||| ccauAAUAAAAUUUUAAUUACAu 2 20 140 162 [hg19:4:165875775-165875797:-] 0.5061 147 6 -6.49 -0.1766 MIMAT0009979 hsa-miR-2054 391712 TRIM61 uuAUUUAAU-UUAAAUAUA-AUGUc |:||||| ||| |||| ||:| auUGAAUUAUAAUCAAUAUAUAUAa 2 22 235 259 [hg19:4:165875678-165875702:-] 0.5061 124 0 -3.73 -0.1384 MIMAT0011160 hsa-miR-2116 391712 TRIM61 ucuggaggauacgaUUCUUGg |||||| augcuaauuaauacAAGAACa 2 8 213 233 [hg19:4:165875704-165875724:-] 0.5061 120 6 -8.89 -0.5949 MIMAT0015002 hsa-miR-466 391712 TRIM61 uacacACAAC-GCACAUACACAUa || || | ||||||| agccaUGCUGCCAACCAUGUGUAg 2 19 96 119 [hg19:4:165875818-165875841:-] 0.5061 141 7 -10.09 -0.1317 MIMAT0015015 hsa-miR-3144-3p 391712 TRIM61 auuucUCUGGCUUGUCCAUAUa | |:: : ||||||: uaauuACAUUUGUAAGGUAUGu 2 18 154 175 [hg19:4:165875762-165875783:-] 0.5061 125 0 -10.91 -0.1580 MIMAT0015016 hsa-miR-3145 391712 TRIM61 guUAAGGUUUGUGAGU-UUUAUAga || :| ::|| :| |||||| guAUAAUAUGUACAUAUAAAUAUgc 3 23 192 216 [hg19:4:165875721-165875745:-] 0.5061 133 0 -5.08 -0.2701 MIMAT0015022 hsa-miR-3149 391712 TRIM61 uaUGUGUGUGUAUAGGUAUGUUu | |:|::| ||: |||||| auAAAUAUGCUAAUUAAUACAAg 2 22 207 229 [hg19:4:165875708-165875730:-] 0.5061 133 6 -8.38 -0.2391 MIMAT0015022 hsa-miR-3149 391712 TRIM61 uauguguguguauaggUAUGUUu |||||| guuuaucuuucuaauaAUACAAa 2 8 280 302 [hg19:4:165875635-165875657:-] 0.5060 120 6 -5.40 -0.1529 MIMAT0015023 hsa-miR-3150 391712 TRIM61 ggUUGGAGCUCCUAGAGGGGuc || | | | |||||| auAAAAUGCACAAACUCCCC-- 3 21 318 337 [hg19:4:165875600-165875619:-] 0.5060 124 0 -13.83 -0.1226 MIMAT0015037 hsa-miR-3163 391712 TRIM61 cagaaugacgggAGUAAAAUau | |||||| aaucaauauauaUAAUUUUAga 3 11 245 266 [hg19:4:165875671-165875692:-] 0.5061 122 0 -1.18 -0.2426 MIMAT0015037 hsa-miR-3163 391712 TRIM61 cagaaugacgggagUAAAAUau |||||| uauaccauaauaaaAUUUUAau 3 9 136 157 [hg19:4:165875780-165875801:-] 0.5061 120 0 -2.57 -0.1966 MIMAT0015046 hsa-miR-3171 391712 TRIM61 cuAUAUAUGUCUAAGG-UAU-GUAga |||:||:| :|||| ||| ||| ggUAUGUAUAUGUUCCUAUACCAUaa 3 23 120 145 [hg19:4:165875792-165875817:-] 0.5061 125 0 -17.65 -0.2069 MIMAT0015050 hsa-miR-323b-3p 391712 TRIM61 uucuccAGCUGGCACAUAACCc | || :|| |||||| uaauuuUAGA-UGUAUAUUGGa 2 17 257 277 [hg19:4:165875660-165875680:-] 0.5061 122 6 -8.96 -0.1777 MIMAT0015052 hsa-miR-3175 391712 TRIM61 ugcagugacgcaagaGAGGGGc |||||| aauaaaaugcacaaaCUCCCC- 2 8 317 337 [hg19:4:165875600-165875620:-] 0.5060 120 6 -14.97 -0.1450 MIMAT0016894 hsa-miR-4262 391712 TRIM61 guccaucagaCUUACAg |||||| auguauauugGAAUGUu 2 8 266 282 [hg19:4:165875655-165875671:-] 0.5061 120 6 -6.96 -0.2074 MIMAT0016902 hsa-miR-4272 391712 TRIM61 uguuagugaucAACUUAc |||||| acaagaacauaUUGAAUu 2 8 225 242 [hg19:4:165875695-165875712:-] 0.5061 120 6 -7.51 -0.2387 MIMAT0016903 hsa-miR-4273 391712 TRIM61 gacagguagucUCUUGUg |||||| uaauuaauacaAGAACAu 2 8 217 234 [hg19:4:165875703-165875720:-] 0.5061 120 6 -8.23 -0.1842 MIMAT0016912 hsa-miR-4282 391712 TRIM61 aggaccuacgUUUAAAAu ||||||| uaccauaauaAAAUUUUa 2 9 138 155 [hg19:4:165875782-165875799:-] 0.5061 140 7 -6.04 -1.2773 MIMAT0016912 hsa-miR-4282 391712 TRIM61 aggaccuacguUUAAAAu |||||| ucaauauauauAAUUUUa 2 8 247 264 [hg19:4:165875673-165875690:-] 0.5061 120 6 -2.29 -0.1923 MIMAT0016926 hsa-miR-4328 391712 TRIM61 uuaggacccUUUUGACc ||||||| uaauaauacAAAACUGa 2 9 291 307 [hg19:4:165875630-165875646:-] 0.5060 140 7 -5.23 -1.1809 MIMAT0000065 hsa-let-7d 391712 TRIM61 uugAUACGUUGGAUGA-UGGAGa | || || || || ||||| uggUCUGGAA-CUCCUGACCUCa 2 20 33 54 [hg19:4:165875883-165875904:-] 0.5061 121 0 -14.16 -0.1709 MIMAT0000066 hsa-let-7e 391712 TRIM61 uugAUAUGUUGGAGGA-UGGAGu | |: || ||||| ||||| uggUCUGGAA-CUCCUGACCUCa 2 20 33 54 [hg19:4:165875883-165875904:-] 0.5061 125 0 -20.47 -0.1742 MIMAT0000087 hsa-miR-30a 391712 TRIM61 gaaggucAGCUCCUACAAAUGu |:| | |||||||: auguauaUUG-GAAUGUUUAUc 2 16 266 286 [hg19:4:165875651-165875671:-] 0.5061 133 0 -8.18 -0.1154 MIMAT0000101 hsa-miR-103 391712 TRIM61 aguAUCGGGACAU-GUUACGACGa |:| :| || | ||||||| ugcUGGGAUUAUAGCCAUGCUGCc 2 21 84 107 [hg19:4:165875830-165875853:-] 0.5061 151 7 -18.41 -0.3415 MIMAT0000104 hsa-miR-107 391712 TRIM61 acuAUCGGGACAU-GUUACGACGa |:| :| || | ||||||| ugcUGGGAUUAUAGCCAUGCUGCc 2 21 84 107 [hg19:4:165875830-165875853:-] 0.5061 151 7 -16.02 -0.3415 MIMAT0000244 hsa-miR-30c 391712 TRIM61 cgACUCU-CACAU--CC-UACAAAUGu | ||| || || || |||||||: uuUUAGAUGUAUAUUGGAAUGUUUAUc 2 22 260 286 [hg19:4:165875651-165875677:-] 0.5061 142 0 -11.62 -0.1154 MIMAT0000245 hsa-miR-30d 391712 TRIM61 gaaggucagcCCCUACAAAUGu || |||||||: gauguauauuGGAAUGUUUAUc 2 13 265 286 [hg19:4:165875651-165875672:-] 0.5061 136 0 -10.07 -0.1166 MIMAT0000256 hsa-miR-181a 391712 TRIM61 ugaguggcugucgcaaCUUACAa |||||| uuuuagauguauauugGAAUGUu 2 8 260 282 [hg19:4:165875655-165875677:-] 0.5061 120 6 -9.16 -0.2132 MIMAT0000257 hsa-miR-181b 391712 TRIM61 uggguggcugucguuaCUUACAa |||||| uuuuagauguauauugGAAUGUu 2 8 260 282 [hg19:4:165875655-165875677:-] 0.5061 120 6 -9.60 -0.2132 MIMAT0000258 hsa-miR-181c 391712 TRIM61 ugaguggcuguccaaCUUACAa |||||| uuuagauguauauugGAAUGUu 2 8 261 282 [hg19:4:165875655-165875676:-] 0.5061 120 6 -8.63 -0.2152 MIMAT0000414 hsa-let-7g 391712 TRIM61 uuGACAUG--UUUGAUGA-UGGAGu ||| | :|||| || ||||| ggCUGGUCUGGAACUCCUGACCUCa 2 21 30 54 [hg19:4:165875883-165875907:-] 0.5061 123 0 -18.58 -0.1759 MIMAT0000415 hsa-let-7i 391712 TRIM61 uugucgugUUUGAUGA-UGGAGu :|||| || ||||| cuggucugGAACUCCUGACCUCa 2 15 32 54 [hg19:4:165875883-165875905:-] 0.5061 122 0 -14.51 -0.1775 MIMAT0000420 hsa-miR-30b 391712 TRIM61 ucgACUCACAUCC-UACAAAUGu || | | || |||||||: agaUGUAUAUUGGAAUGUUUAUc 2 20 264 286 [hg19:4:165875651-165875673:-] 0.5061 138 0 -10.65 -0.1154 MIMAT0000458 hsa-miR-190 391712 TRIM61 ugGAUUAUAUAGUUUGUAUAGu :||||| | :|||||||: aaUUAAUACA-AGAACAUAUUg 2 21 218 238 [hg19:4:165875699-165875719:-] 0.5061 146 0 -10.03 -0.1741 MIMAT0000458 hsa-miR-190 391712 TRIM61 uggAUUAUAUAGUUUGUAUAgu ||||||:| |||||| guaUAAUAUGU---ACAUAUaa 3 20 192 210 [hg19:4:165875727-165875745:-] 0.5061 139 0 -9.26 -0.2450 MIMAT0000692 hsa-miR-30e 391712 TRIM61 gaaggucaguUCCUACAAAUGu :| |||||||: gauguauauuGGAAUGUUUAUc 2 13 265 286 [hg19:4:165875651-165875672:-] 0.5061 132 0 -8.04 -0.1178 MIMAT0004683 hsa-miR-362-3p 391712 TRIM61 acuuagGAACUUAUCCACACAa :||| | |||| ||| auuacaUUUGUA-AGGUAUGUa 2 17 156 176 [hg19:4:165875761-165875781:-] 0.5061 122 0 -9.34 -0.1018 MIMAT0000727 hsa-miR-374a 391712 TRIM61 guGAAUAGUCCA-ACA-UAAUAUu :||:| |||| ||| |||||| caUUUGUAAGGUAUGUAAUUAUAu 2 21 160 183 [hg19:4:165875754-165875777:-] 0.5061 139 6 -16.16 -0.8520 MIMAT0000727 hsa-miR-374a 391712 TRIM61 gugaaUAGUCCAACAUAAUAUu | || ||| |||||| acaagAACAUAUUGAAUUAUAa 2 18 225 246 [hg19:4:165875691-165875712:-] 0.5061 129 6 -7.26 -0.2637 MIMAT0004692 hsa-miR-340 391712 TRIM61 uuAGUCAGAGUAACGAAAUAUu |:| : :||| || |||| aaUUAUAUGUAUUUCUGUAUAa 2 21 176 197 [hg19:4:165875740-165875761:-] 0.5061 124 0 -5.96 -0.1038 MIMAT0001532 hsa-miR-448 391712 TRIM61 uacCCUGUAGGAUGUAUACGuu | |||| || |||||| uauGUACAU-AUAAAUAUGCua 3 20 198 218 [hg19:4:165875719-165875739:-] 0.5061 137 0 -9.83 -0.3163 MIMAT0002171 hsa-miR-410 391712 TRIM61 uguccgguagacacAAUAUAa |||||| uguaagguauguaaUUAUAUg 2 8 164 184 [hg19:4:165875753-165875773:-] 0.5061 120 6 -7.89 -0.1174 MIMAT0002821 hsa-miR-181d 391712 TRIM61 uggguggcuguuguuaCUUACAa |||||| uuuuagauguauauugGAAUGUu 2 8 260 282 [hg19:4:165875655-165875677:-] 0.5061 120 6 -8.94 -0.2132 MIMAT0003163 hsa-miR-539 391712 TRIM61 ugugugGUUCCUAU---UAAAGAgg :|| ||| |||||| gguaugUAAUUAUAUGUAUUUCUgu 3 17 169 193 [hg19:4:165875744-165875768:-] 0.5061 123 0 -5.19 -0.1148 MIMAT0003258 hsa-miR-590-5p 391712 TRIM61 gacgugaaaAUACUUAUUCGAg ||| |||| ||| auauguacaUAUAAAUAUGCUa 2 14 197 218 [hg19:4:165875719-165875740:-] 0.5061 125 0 -9.15 -0.1044 MIMAT0004801 hsa-miR-590-3p 391712 TRIM61 ugaucGAAUAUG----UAUUUUAAu | ||||| |||||||| auguuCCUAUACCAUAAUAAAAUUu 2 17 129 153 [hg19:4:165875784-165875808:-] 0.5061 151 7 -5.98 -1.1865 MIMAT0004801 hsa-miR-590-3p 391712 TRIM61 ugAUCGAAUAUGUAUUUUAau |:|:| | | ||||||| gaUGGUUAAAAAAUAAAAUgc 3 20 306 326 [hg19:4:165875611-165875631:-] 0.5060 143 0 -5.65 -0.1242 MIMAT0004922 hsa-miR-875-5p 391712 TRIM61 guggacuauuuugacUCCAUAu |||||| uuaauuacauuuguaAGGUAUg 2 8 153 174 [hg19:4:165875763-165875784:-] 0.5061 120 6 -12.36 -0.1704 MIMAT0004929 hsa-miR-190b 391712 TRIM61 uugGGUUAUAGU-UUGUAUAGu ::|||| | |||||||: uaaUUAAUACAAGAACAUAUUg 2 19 217 238 [hg19:4:165875699-165875720:-] 0.5061 141 0 -9.95 -0.1725 MIMAT0004929 hsa-miR-190b 391712 TRIM61 uuggGUUAUAGUUUGUAUAgu :||||| : |||||| uguaUAAUAU-GUACAUAUaa 3 18 191 210 [hg19:4:165875727-165875746:-] 0.5061 135 0 -8.33 -0.2602 MIMAT0004954 hsa-miR-543 391712 TRIM61 uuCUUCACGUGGCGCUUACAAa || || :|::| ||||||| uaGAUGUAUAUUG-GAAUGUUu 2 21 263 283 [hg19:4:165875654-165875674:-] 0.5061 158 7 -17.00 -0.7961 MIMAT0004955 hsa-miR-374b 391712 TRIM61 guGAAUCGUCCA-ACA-UAAUAUa :||: |||| ||| |||||| caUUUGUAAGGUAUGUAAUUAUAu 2 21 160 183 [hg19:4:165875754-165875777:-] 0.5061 131 6 -16.26 -0.8485 MIMAT0004955 hsa-miR-374b 391712 TRIM61 gugaaUCGUCCAACAUAAUAUa | || ||| |||||| acaagAACAUAUUGAAUUAUAa 2 18 225 246 [hg19:4:165875691-165875712:-] 0.5061 129 6 -5.42 -0.2637

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G051423 TRIM61 Homo sapiens 391712

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End TRIM61; RNF35 1 16 100 5.01 - chr4 165876127 165876143 TRIM61; RNF35 17 339 99.8 5.01 - chr4 165875597 165875920

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIM61 kshv-miR-K12-9star beg:0 end:10 pic:3' TCGCCCCAAATGCGTCGACCCA 5'& |.||||||| &5' ------------GTAGCTGGG- 3' TRIM61 hsa-miR-103 beg:89 end:107 pic:3' AGTATCGGGACATGTTACGACGA 5'& |.|||||| ||||||| &5' TTATAGCC-------ATGCTGC- 3' TRIM61 hsa-miR-107 beg:91 end:107 pic:3' ACTATCGGGACATGTTACGACGA 5'& |||||| ||||||| &5' --ATAGCC-------ATGCTGC- 3' TRIM61 hsa-miR-493star beg:189 end:206 pic:3' TTACTTTCGGATGGTACATGTT 5'& |. .||||||| &5' -------GTATAATATGTACA- 3' TRIM61 hsa-miR-661 beg:18 end:33 pic:3' TGCGCGTCCGGTCTCTGGGTCCGT 5'& ||.. .||||||| &5' -------GGTT----GCCCAGGC- 3' TRIM61 hsa-miR-30bstar beg:64 end:81 pic:3' CTTCATTTGTAGGTGGAGGGTC 5'& .| |. |||||||| &5' -------GCCTTGACCTCCCA- 3' TRIM61 hsa-miR-940 beg:52 end:72 pic:3' CCCCTCGCCCCCGGGACGGAA 5'& |||| .|||||||| &5' ----AGCGATCTTCCTGCCTT 3' TRIM61 ebv-miR-BART14star beg:111 end:124 pic:3' ACATTTAGCCGTCGCATCCCAT 5'& |.|||||||| &5' ------------GTGTAGGGTA 3' TRIM61 hsa-let-7gstar beg:113 end:130 pic:3' CGTTCCGTCACCGGACATGTC 5'& |.|| ||. ||||.| &5' -----GTAG-GGTATGTATA- 3' TRIM61 hsa-miR-1179 beg:262 end:284 pic:3' GGTTGGTTACTT----TCTTACGAA 5'& .||| .|||||.|| &5' ------GATGTATATTGGAATGTTT 3' TRIM61 hsa-miR-1180 beg:22 end:43 pic:3' TGTGTGGGTGCGCTC-GGCCTTT 5'& .|||| || .| |.|||| &5' ----GCCCAGGCTGGTCTGGAA- 3' TRIM61 hsa-miR-1180 beg:70 end:92 pic:3' TGTGTGGGTGCGCTCGGCCTTT 5'& || | |||| | ||.||.| &5' AC-CTCCCAAA-GTGCTGGGA- 3' TRIM61 hsa-miR-1234 beg:13 end:34 pic:3' CACCCCACCCACCAGTCCGGCT 5'& | | ||| || |||||.| &5' --GAGATGGTTGCCCAGGCTG- 3' TRIM61 hsa-miR-1271 beg:94 end:109 pic:3' ACTCACGA-ACGATCCACGGTTC 5'& || ||| |||||| &5' -----GCCATGC----TGCCAA- 3' TRIM61 hsa-miR-1284 beg:102 end:120 pic:3' CTTTTCGGTCCCAGACATATCT 5'& |||| |||.|||. &5' -----GCCAACCA-TGTGTAGG 3' TRIM61 hsa-miR-1285 beg:19 end:32 pic:3' TCCAGAGTGAAACAACGGGTCT 5'& |||||||||. &5' ------------GTTGCCCAGG 3' TRIM61 hsa-miR-181cstar beg:294 end:313 pic:3' CAGGTGAGTTGCCAGCTACCAA 5'& .|| ||| .||||||| &5' ---TACAAAAC---TGATGGTT 3' TRIM61 hsa-miR-182 beg:94 end:109 pic:3' TCACACTCAAGATGGTA--ACGGTTT 5'& .|||| |||||| &5' ------------GCCATGCTGCCAA- 3' TRIM61 hsa-miR-1827 beg:54 end:72 pic:3' TAAGTTAGAT-GACGGAGT 5'& |.|||| ||||||. &5' ---CGATCTTCCTGCCTT- 3' TRIM61 hsa-miR-182star beg:27 end:45 pic:3' ATCAACCGTTCAGATCTTGGT 5'& ||| .||||.||||. &5' -----GGCTGGTCTGGAACT- 3' TRIM61 hsa-miR-1908 beg:49 end:70 pic:3' CTGGTTAGC-GGCAGGGGCGGC 5'& .||| || .| |.||.||| &5' --TCAAGCGATC-TTCCTGCC- 3' TRIM61 hsa-miR-202 beg:59 end:78 pic:3' AAGGGTACGGGATATGGAGA 5'& |.|| ||||.|. ||||| &5' -TTCC-TGCCTTG-ACCTC- 3' TRIM61 hsa-miR-20bstar beg:1 end:17 pic:3' GACCTTCACGGGTATGATGTCA 5'& ||. . ||||||| &5' --------GCTGGGACTACAG- 3' TRIM61 hsa-miR-2114 beg:1 end:14 pic:3' CTGGCGAAGTTCCTTCCCTGAT 5'& ||| ||||||| &5' ----GCT--------GGGACTA 3' TRIM61 hsa-miR-2114 beg:74 end:95 pic:3' CTGGCGAAGTTC-CTTCCCTGAT 5'& || | ||| | ||||.|| &5' --CC-CA--AAGTGCTGGGATTA 3' TRIM61 hsa-miR-216a beg:75 end:95 pic:3' AGTGTCAACGGT----CGACTCTAAT 5'& ||| ||||.||||| &5' ---------CCAAAGTGCTGGGATTA 3' TRIM61 hsa-miR-2909 beg:64 end:75 pic:3' GGTTCTCTACAACCGGGATTG 5'& |||.|.|| &5' -------------GCCTTGAC 3' TRIM61 hsa-miR-297 beg:188 end:210 pic:3' GTACG---TGTACGTGTGTATGTA 5'& ||. |.|||.|||.||| &5' --TGTATAATATGTACATATA--- 3' TRIM61 hsa-miR-30c-1star beg:64 end:81 pic:3' CCTCATTTGTTGGGA---GAGGGTC 5'& .||.| |||||| &5' ----------GCCTTGACCTCCCA- 3' TRIM61 hsa-miR-30c-2star beg:64 end:81 pic:3' TCTCATTTGTCGGAA---GAGGGTC 5'& ||||| |||||| &5' ----------GCCTTGACCTCCCA- 3' TRIM61 hsa-miR-3139 beg:116 end:138 pic:3' TTGTCCGTAGACAACTCGAGGAT 5'& .||.|| | |.||||| &5' ---GGGTATGTATAT-GTTCCTA 3' TRIM61 hsa-miR-3141 beg:60 end:80 pic:3' AGGA-GGAGGTGGGCGGGAG 5'& |||| |||. |||. ||| &5' TCCTGCCTTGACCT-CCC-- 3' TRIM61 hsa-miR-3168 beg:27 end:46 pic:3' CAGACTGAC---ATCTTGAG 5'& |.||| |.|||||| &5' ----GGCTGGTCTGGAACTC 3' TRIM61 hsa-miR-3171 beg:117 end:141 pic:3' CTATATATGTCTAAGG-TATGTAGA 5'& |.|||.||.| .|||| |||| &5' GGTATGTATATGTTCCTATAC---- 3' TRIM61 hsa-miR-32star beg:228 end:243 pic:3' TTTATAGTGTGTGTGATTTAAC 5'& |||.|.|.|||| &5' ---------ACATATTGAATT- 3' TRIM61 hsa-miR-4270 beg:60 end:80 pic:3' CGGGAGGGGACT-GAGGGACT 5'& .||| ||.||| ||||| &5' -TCCTGCCTTGACCTCCC--- 3' TRIM61 hsa-miR-4283 beg:37 end:55 pic:3' TTTGAGCGACTCGGGGT 5'& .||||| |||| ||.|| &5' GAACTC-CTGA-CCTCA 3' TRIM61 hsa-miR-4320 beg:4 end:19 pic:3' TCCTTCGATGTCTTAGGG 5'& ||.| |||||||. &5' -GGGA-CTACAGAG---- 3' TRIM61 hsa-miR-449a beg:92 end:109 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||.| |..|||||| &5' ------TAGCC--ATGCTGCCA 3' TRIM61 hsa-miR-486-3p beg:62 end:73 pic:3' TAGGACATGACTCGACGGGGC 5'& |||||..| &5' -------------CTGCCTTG 3' TRIM61 hsa-miR-498 beg:51 end:74 pic:3' CTTTTTGC--GGGGGACCGAACTTT 5'& ||.|| |..|||| ||||| &5' ---AAGCGATCTTCCTGCCTTGA-- 3' TRIM61 hsa-miR-500 beg:72 end:95 pic:3' AGAGTGGGTCCATCGTTCCTAAT 5'& ||| || || || .|||||| &5' -CTC-CCAAAGT-GCTGGGATTA 3' TRIM61 hsa-miR-500b beg:22 end:42 pic:3' TGGGTCC-ATCGTTCCTAA 5'& .|||||| |.|. ||| &5' GCCCAGGCTGGTCTGGA-- 3' TRIM61 hsa-miR-543 beg:262 end:284 pic:3' TTCTTCACGTGGCGCTTACAAA 5'& ||| || .|..| |||||||| &5' -AGATGTATATTG-GAATGTTT 3' TRIM61 hsa-miR-567 beg:224 end:238 pic:3' CAAGACAGGACCTTCTTGTATGA 5'& |||||||||.| &5' ------------AAGAACATATT 3' TRIM61 hsa-miR-581 beg:213 end:231 pic:3' TGACTAGATCTCTTGTGTTCT 5'& ||| ||.|||||| &5' ------CTAATTAATACAAGA 3' TRIM61 hsa-miR-584 beg:128 end:146 pic:3' GAGTCAGGGTCCGTTTGGTATT 5'& ||.|| ||||||| &5' ----GTTCCTAT---ACCATAA 3' TRIM61 hsa-miR-584 beg:83 end:103 pic:3' GAGTCAGGGTCCGT---TTGGTATT 5'& | || |.||||. &5' -------CTGGGATTATAGCCATG- 3' TRIM61 hsa-miR-622 beg:40 end:63 pic:3' CGAGG-TTGGAG-TCGTCTGACA 5'& |||| .||||| |||. || &5' -CTCCTGACCTCAAGCGATCT-- 3' TRIM61 hsa-miR-635 beg:13 end:32 pic:3' CCTGTAACAAAGTCACGGGTTCA 5'& || || || ||||||.| &5' -GAGATGGT-----TGCCCAGG- 3' TRIM61 hsa-miR-662 beg:1 end:23 pic:3' GACGACCC-GGTGTTGC-ACCCT 5'& |||||| |.|||. ||| &5' --GCTGGGACTACAGAGATGG-- 3' TRIM61 hsa-miR-770-5p beg:71 end:91 pic:3' ACCGGGACTGTGCACCATGACCT 5'& ||| || ||.||||. &5' ----CCTCCCAAA--GTGCTGGG 3' TRIM61 hsa-miR-885-3p beg:88 end:108 pic:3' ATAGGTGATGTGGG-GCGACGGA 5'& |.||.| || .|||||| &5' -----ATTATAGCCATGCTGCC- 3' TRIM61 hsv1-miR-H5-5p beg:63 end:80 pic:3' CATCTCTACGGGCTTGGGGGGG 5'& ||||. .|||.||| &5' -------TGCCTTGACCTCCC- 3' TRIM61 hsv2-miR-H3 beg:60 end:83 pic:3' GAGGGTTGGCGTCT-GAGGGTTT 5'& ||.|| .|| || |||||||| &5' CTTCCTGCCTT-GACCTCCCAAA 3' TRIM61 kshv-miR-K12-10astar beg:15 end:34 pic:3' TCACCACCATAGCGGGGTTCGG 5'& | |||| .| ||||.||. &5' ---GATGGT--TG-CCCAGGCT 3' TRIM61 kshv-miR-K12-10astar beg:35 end:58 pic:3' TCACCACCATAGC-GGGGTTCGG 5'& ||| .| ||.||||| &5' --TGGAACTCCTGACCTCAAGC- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIM61 High_conserved miR-138/138ab chr4:165890775 8-mer 16 CDS TRIM61 High_conserved miR-145 chr4:165890642 7-mer-A1 7 CDS TRIM61 High_conserved miR-145 chr4:165890720 7-mer-m8 7 CDS TRIM61 High_conserved miR-153 chr4:165890660 8-mer 16 CDS TRIM61 High_conserved miR-153 chr4:165891386 7-mer-A1 9 5pUTR TRIM61 High_conserved miR-199ab-5p chr4:165890643 7-mer-A1 7 CDS TRIM61 High_conserved miR-203 chr4:165891259 7-mer-A1 7 5pUTR TRIM61 High_conserved miR-24/24ab/24-3p chr4:165898792 7-mer-m8 4 5pUTR TRIM61 High_conserved miR-25/32/92abc/363/363-3p/367 chr4:165891384 7-mer-A1 7 5pUTR TRIM61 High_conserved miR-26ab/1297/4465 chr4:165891084 8-mer 20 CDS TRIM61 High_conserved miR-27abc/27a-3p chr4:165891368 7-mer-A1 4 5pUTR TRIM61 High_conserved miR-103a/107/107ab chr4:165875830 7-mer-m8 7 3pUTR TRIM61 High_conserved miR-33ab/33-5p chr4:165890707 7-mer-m8 9 CDS TRIM61 High_conserved miR-33ab/33-5p chr4:165897841 7-mer-A1 7 5pUTR TRIM61 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr4:165898813 7-mer-A1 4 5pUTR TRIM61 High_conserved miR-383 chr4:165890781 7-mer-A1 13 CDS TRIM61 High_conserved miR-128/128ab chr4:165890766 7-mer-m8 11 CDS TRIM61 High_conserved miR-128/128ab chr4:165891234 7-mer-m8 2 5pUTR TRIM61 Medium_conserved miR-542-3p chr4:165876228 7-mer-m8 7 CDS TRIM61 Medium_conserved miR-543 chr4:165875654 7-mer-m8 0 3pUTR TRIM61 Medium_conserved miR-590-3p chr4:165875784 7-mer-m8 7 3pUTR TRIM61 Medium_conserved miR-615-3p chr4:165898730 7-mer-m8 4 5pUTR TRIM61 Medium_conserved miR-758 chr4:165897964 7-mer-A1 13 5pUTR TRIM61 Medium_conserved miR-185/882/3473/4306/4644 chr4:165891040 7-mer-m8 16 CDS TRIM61 Medium_conserved miR-186 chr4:165898711 7-mer-m8 4 5pUTR TRIM61 Medium_conserved miR-329/329ab/362-3p chr4:165890863 7-mer-A1 9 CDS TRIM61 Medium_conserved miR-340-5p chr4:165890956 7-mer-A1 7 CDS TRIM61 Medium_conserved miR-374ab chr4:165875691 7-mer-A1 2 3pUTR TRIM61 Medium_conserved miR-374ab chr4:165897846 7-mer-A1 9 5pUTR TRIM61 Medium_conserved miR-378/422a/378bcdefhi chr4:165890970 7-mer-A1 13 CDS TRIM61 Medium_conserved miR-384/384-3p chr4:165890729 7-mer-A1 16 CDS TRIM61 Medium_conserved miR-384/384-3p chr4:165897921 7-mer-A1 9 5pUTR TRIM61 Medium_conserved miR-448/448-3p chr4:165890660 7-mer-A1 13 CDS TRIM61 Medium_conserved miR-448/448-3p chr4:165891386 8-mer 13 5pUTR TRIM61 Medium_conserved miR-495/1192 chr4:165891142 7-mer-A1 0 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIM61 RAID00041423 hsa-miR-578 miRNA MIMAT0003243 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00100432 hsa-miR-181a-5p miRNA MIMAT0000256 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00365757 hsa-miR-30c-5p miRNA MIMAT0000244 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00392117 hsa-miR-1185-2-3p miRNA MIMAT0022713 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00638443 hsa-let-7g-5p miRNA MIMAT0000414 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00666321 hsa-miR-190a-5p miRNA MIMAT0000458 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00779028 hsa-miR-6799-5p miRNA MIMAT0027498 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00812183 hsa-miR-374a-5p miRNA MIMAT0000727 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00867247 hsa-miR-374b-5p miRNA MIMAT0004955 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID00895289 hsa-miR-6763-5p miRNA MIMAT0027426 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01009440 hsa-miR-142-3p miRNA MIMAT0000434 TRIM61 mRNA 391712 CLIP-seq 0.5483 TRIM61 RAID01097001 hsa-miR-30a-5p miRNA MIMAT0000087 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01122880 hsa-miR-3689a-3p miRNA MIMAT0018118 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01269615 hsa-miR-1273h-5p miRNA MIMAT0030415 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01343799 hsa-miR-103a-3p miRNA MIMAT0000101 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01476104 hsa-let-7e-5p miRNA MIMAT0000066 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01489349 hsa-miR-590-5p miRNA MIMAT0003258 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01527094 hsa-miR-1185-1-3p miRNA MIMAT0022838 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01673125 hsa-miR-3689b-3p miRNA MIMAT0018181 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01678433 hsa-let-7f-2-3p miRNA MIMAT0004487 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01693110 hsa-miR-181d-5p miRNA MIMAT0002821 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01717010 hsa-miR-6780a-5p miRNA MIMAT0027460 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01762211 hsa-miR-7977 miRNA MIMAT0031180 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01762762 hsa-miR-493-5p miRNA MIMAT0002813 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01773978 hsa-miR-362-3p miRNA MIMAT0004683 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01872410 hsa-miR-30e-5p miRNA MIMAT0000692 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01884081 hsa-miR-181b-5p miRNA MIMAT0000257 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID01995159 hsa-miR-190b miRNA MIMAT0004929 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02159343 hsa-miR-30d-5p miRNA MIMAT0000245 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02455310 hsa-let-7i-5p miRNA MIMAT0000415 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02509634 hsa-miR-410-3p miRNA MIMAT0002171 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02517375 hsa-miR-107 miRNA MIMAT0000104 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02594392 hsa-miR-450a-2-3p miRNA MIMAT0031074 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02602139 hsa-miR-543 miRNA MIMAT0004954 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02675876 hsa-miR-643 miRNA MIMAT0003313 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02867109 hsa-miR-30b-3p miRNA MIMAT0004589 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID02925037 hsa-miR-539-5p miRNA MIMAT0003163 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03158914 hsa-miR-590-3p miRNA MIMAT0004801 TRIM61 mRNA 391712 Prediction 0.2202 TRIM61 RAID03158934 hsa-miR-30b-5p miRNA MIMAT0000420 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03453601 hsa-miR-875-5p miRNA MIMAT0004922 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03555746 hsa-miR-340-5p miRNA MIMAT0004692 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03568589 hsa-miR-3150a-3p miRNA MIMAT0015023 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03644739 hsa-miR-181c-5p miRNA MIMAT0000258 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03754979 hsa-let-7d-5p miRNA MIMAT0000065 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03775564 hsa-miR-6779-5p miRNA MIMAT0027458 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03806310 hsa-miR-552-5p miRNA MIMAT0026615 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID03908230 hsa-miR-3689c miRNA MIMAT0019007 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID04039989 hsa-miR-448 miRNA MIMAT0001532 TRIM61 mRNA 391712 Prediction 0.1828 TRIM61 RAID04415779 CRNDE lncRNA 643911 TRIM61 protein 391712 Microarray//RNA-seq 0.6606 TRIM61 RAID04848721 FENDRR lncRNA 400550 TRIM61 protein 391712 Microarray//RNA-seq 0.6606