DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRIM40 3'UTR b1abbfef78 BA113678 NM_138700 chr6:30223569-30224491:+ TRIM40 3'UTR 388aa94dc0 BA113679 NM_138700 chr6:30223569-30224491:+ TRIM40 3'UTR 9e9e47c3e7 BA113680 NM_138700 chr6:30213183-30213382:+ TRIM40 3'UTR 9ab8fa38d4 BA113681 NM_138700 chr6:30213183-30213382:+ TRIM40 5'UTR b1abbfef78 CA178468 NM_138700 chr6:30212489-30212792:+ TRIM40 5'UTR 388aa94dc0 CA178469 NM_138700 chr6:30211864-30212792:+ TRIM40 5'UTR 9e9e47c3e7 CA178470 NM_138700 chr6:30211864-30212792:+ TRIM40 5'UTR 9ab8fa38d4 CA178471 NM_138700 chr6:30211880-30212792:+

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRIM40 hsa-miR-511 beg:460 end:479 pic:3' ACTGAC-GTCTCGTTTTCTGTG 5'& | |||| . ||||||| &5' -----GACAGACTCAAAGACA- 3' TRIM40 hsa-miR-943 beg:137 end:153 pic:3' GACCTCCTGCCGTTGTCAGTC 5'& |.| | ||||||| &5' -------ATGTCCACAGTCA- 3' TRIM40 hsa-miR-28-5p beg:101 end:120 pic:3' GAGTTATCT-GACACTCGAGGAA 5'& .|. ||| ||||||| &5' ------GGGCCTGCCAGCTCCT- 3' TRIM40 hsa-miR-378c beg:793 end:809 pic:3' GGTGAGAAGACTGAGGTTCAGGTCA 5'& || || ||||||| &5' ----------GAA-CCTAGTCCAG- 3' TRIM40 hsa-miR-378 beg:793 end:809 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& || || ||||||| &5' ------GAA-CCTAGTCCAG- 3' TRIM40 hsa-miR-422a beg:793 end:809 pic:3' CGGAAGACTGGGATTCAGGTCA 5'& || ||| ||||||| &5' -------GAACCT-AGTCCAG- 3' TRIM40 hsa-miR-620 beg:261 end:280 pic:3' TAAAGATATAGATAGAGGTA 5'& |.|.|. |||||||| &5' ---TTTGTGAA-ATCTCCAT 3' TRIM40 kshv-miR-K12-10b beg:807 end:817 pic:3' CGGTGAGCCCCCCTGTTGTGGT 5'& ||||||| &5' --------------CAACACC- 3' TRIM40 hsa-miR-759 beg:592 end:608 pic:3' CAGTTTTAACAAAC-GTGAGACG 5'& | || ||||||| &5' ---------GGGTGTCACTCTG- 3' TRIM40 hsa-miR-485-5p beg:180 end:198 pic:3' CTTAAGTAGTGC---CGGTCGGAGA 5'& ||| ||||||||| &5' ---------ACGATAGCCAGCCTC- 3' TRIM40 hsa-miR-485-5p beg:467 end:484 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& ||| ||||||| &5' -------TCAAAGACAGCCTC- 3' TRIM40 hsa-miR-1207-3p beg:382 end:402 pic:3' CTTTACTCC-C-GGTCGACT 5'& ||| || | |||||||| &5' ---ATGTGGAGCCCAGCTGA 3' TRIM40 hsa-miR-1205 beg:393 end:412 pic:3' GAGTTTCGTTT--GGGACGTCT 5'& ||| .||||||| &5' -----AGCTGAGTTCCTGCAG- 3' TRIM40 kshv-miR-K12-1 beg:272 end:291 pic:3' CGAATGTGGGTCAAA-GGACATTA 5'& .||| ||| ||||||| &5' -------TCCATTTTGCCTGTAA- 3' TRIM40 ebv-miR-BART20-3p beg:472 end:492 pic:3' CCATTGTCCGACACGGAAGTAC 5'& .|||| || |||||||| &5' ---GACAGCCTC--CCTTCATG 3' TRIM40 hsa-miR-4254 beg:328 end:344 pic:3' CTCTACCACCTCATCGAGGTCCG 5'& ||| |||||||| &5' --------GGATC--CTCCAGGC 3' TRIM40 hsa-miR-765 beg:629 end:639 pic:3' GTAGTGGAAGGAAGAGGAGGT 5'& ||||||| &5' -------------CTCCTCC- 3' TRIM40 hsa-miR-509-3-5p beg:394 end:414 pic:3' GTACTAACGGTGCA--GACGTCAT 5'& ||. || |||||||| &5' -------GCTGAGTTCCTGCAGTA 3' TRIM40 hsa-miR-4271 beg:764 end:781 pic:3' GGGGTGGAAAAGAAGGGGG 5'& .| ||||||||| &5' ----GCAGATTCTTCCCC- 3' TRIM40 ebv-miR-BART11-5p beg:405 end:425 pic:3' GTTGATCG-CGTGGTTTGACAGACT 5'& || |.||. .|||||| &5' ------GCAGTACTTG-TTGTCTG- 3' TRIM40 ebv-miR-BART14 beg:248 end:267 pic:3' TAGGGATGATGACGTCGTAAAT 5'& .||.| | |||||||. &5' GTCTCCA-----GGAGCATTTG 3' TRIM40 ebv-miR-BART5star beg:584 end:604 pic:3' TCCACTTGTCGCCG-GGTG 5'& ||||| |.|| ||. .||| &5' AGGTG-ATAG-GGTGTCAC 3' TRIM40 ebv-miR-BART6-3p beg:514 end:531 pic:3' AGATTCCGATCAGGCTAGGGGC 5'& || ||..|.||||| &5' -------CTTGTTTGGTCCCC- 3' TRIM40 ebv-miR-BART8star beg:816 end:835 pic:3' AGATGCTGGGGTATCT-AACACTG 5'& ||. .|||| |||||| &5' -----GAT--TATAGTCTTGTGA- 3' TRIM40 hsa-miR-4283 beg:655 end:665 pic:3' TTTGAGCGACTCGGGGT 5'& ||||||| &5' ---------GAGCCCC- 3' TRIM40 hsa-miR-105 beg:250 end:288 pic:3' TGGTGTCCTCAGA----CTCGTAAACT 5'& |||| ||||||||| &5' ---------GTCTCCAGGAGCATTTG- 3' TRIM40 hsa-miR-541 beg:633 end:652 pic:3' TCAGGTCTAAGACACGGGTGGT 5'& ||| ||| ||||||| &5' --TCCTTG--CTG-GCCCACC- 3' TRIM40 hsa-miR-654-5p beg:636 end:652 pic:3' CGTGTACAAGACG-CCGGGTGGT 5'& .||| |||||||| &5' ---------TTGCTGGCCCACC- 3' TRIM40 hsa-miR-3184 beg:655 end:667 pic:3' TTTTCGAGCCAGACTCCGGGGAGT 5'& || ||||||| &5' -------------GA-GCCCCTC- 3' TRIM40 hsa-miR-512-5p beg:389 end:404 pic:3' CTTTCACGGGAGTTCCGACTCAC 5'& |||| ||||||| &5' ------GCCCA----GCTGAGT- 3' TRIM40 hsa-miR-296-5p beg:232 end:248 pic:3' TGTCCTAACTCCC-CCCCGGGA 5'& |||| ||||||| &5' --------GAGGTCGGGGCCC- 3' TRIM40 hsa-miR-3144-5p beg:514 end:531 pic:3' GATATATAGAG-AAACCAGGGGA 5'& ||. ||||||||||| &5' --------CTTGTTTGGTCCCCT 3' TRIM40 hsa-miR-224 beg:545 end:563 pic:3' TTGCCTTGGTGATCACTGAAC 5'& ||.|.| |||||||| &5' ---GGGATCT---GTGACTTG 3' TRIM40 hsa-miR-1271 beg:851 end:870 pic:3' ACTCACGAACGATCCACGGTTC 5'& |||| ||| ||||||| &5' --AGTGAA-GCT--GTGCCAA- 3' TRIM40 hsa-miR-873 beg:394 end:410 pic:3' TCCTCTGAGTG-TTCAAGGACG 5'& .| .||||||||| &5' ---------GCTGAGTTCCTGC 3' TRIM40 hcmv-miR-UL70-3p beg:295 end:313 pic:3' GGCGCGCGGT-CGGGTAGGGG 5'& |. |||||||.|. &5' ------GTAGTGCCCATCTCT 3' TRIM40 hiv1-miR-N367 beg:223 end:243 pic:3' AACTTCGTGGT-AGGTTTCCAGTCA 5'& .||| | . |||||.| &5' -------GCCACTGTGGAGGTCGG- 3' TRIM40 hsa-let-7astar beg:613 end:630 pic:3' CTTTCTGTCATC-TAACATATC 5'& || | ||||||||| &5' --------GTTGCATTGTATAG 3' TRIM40 hsa-let-7e beg:179 end:203 pic:3' TTGATAT--GTTGGAGGATGGAGT 5'& .|| ||| ||.|||||| || &5' GACGATAGCCAGCCTCCTTCC--- 3' TRIM40 hsa-miR-106astar beg:611 end:627 pic:3' CATTCTTCACGAATGTAACGTC 5'& ||| ||.|||||.| &5' -------GTG-TTGCATTGTA- 3' TRIM40 hsa-miR-106bstar beg:879 end:896 pic:3' CGTCGTTCATGGG--TGTCACGCC 5'& || ||||||.| &5' ---------ACAGAAACAGTGTG- 3' TRIM40 hsa-miR-10a beg:580 end:600 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& .|||| || |.|||||. &5' -GCAAA---GGTG--ATAGGGTG 3' TRIM40 hsa-miR-10b beg:580 end:600 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& .|||| ||| |.|||||. &5' -GCAAA---GGTG--ATAGGGTG 3' TRIM40 hsa-miR-1182 beg:652 end:676 pic:3' CAGTGTA-GGGAGGGTTCTGGGAG 5'& |.| | ||||||.|.|| || &5' -TTAGAGCCCCTCCTAGGAGCC-- 3' TRIM40 hsa-miR-1202 beg:527 end:553 pic:3' GAGGGGG--TGACGTCGACCGTG 5'& ||||||. | ||.| ||| |. &5' CTCCCCTTGAGTGTAAGTGGGAT 3' TRIM40 hsa-miR-1202 beg:771 end:792 pic:3' GAGGGGG-TGACGTCGACCGTG 5'& ||.|||| |||| ||| || &5' CTTCCCCAACTG-AGCCGG--- 3' TRIM40 hsa-miR-1207-5p beg:40 end:64 pic:3' GGGGAGGGTC-GGAGGGACGGT 5'& |.||||.| |||.||| ||| &5' CTCCTCTCTCTCCTTCCT-CCA 3' TRIM40 hsa-miR-1207-5p beg:187 end:204 pic:3' GGGGAGGGTCGGAGGGACGGT 5'& |||||||||.| ||| &5' ------CCAGCCTCCTT-CCA 3' TRIM40 hsa-miR-1208 beg:873 end:894 pic:3' AGGCGGACAGACTTGTCACT 5'& || || ||||||| &5' -CCACCCACAGAAACAGTG- 3' TRIM40 hsa-miR-1208 beg:356 end:374 pic:3' AGGCGGACAGACTTGTCACT 5'& ||. || |.|||||| &5' ---GCTCATC--AGCAGTGA 3' TRIM40 hsa-miR-122 beg:12 end:30 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ..||||| ||||.|| &5' -GGACACCT------CACTTCA 3' TRIM40 hsa-miR-1225-5p beg:288 end:309 pic:3' GGGGGGTGAC--CCGGCATGGGTG 5'& |||| ||. ||.||||. &5' ------ACTGATGGTAGTGCCCAT 3' TRIM40 hsa-miR-1225-5p beg:72 end:94 pic:3' GGGGGGTGACCCGGCATGGGTG 5'& |||||||||||.| |||||| &5' -CCCCCACTGGGTC-TACCCA- 3' TRIM40 hsa-miR-1228star beg:28 end:53 pic:3' GTGTGTGGA--CGGGGGCGGGTG 5'& .| ||||| |||.|| |.| | &5' -GCTCACCTCAGCCTCCTCTCTC 3' TRIM40 hsa-miR-1246 beg:497 end:514 pic:3' GGACGAGGTTTTTAGGTAA 5'& |||. .|||.||| &5' ----CTCTTGGAATTCAT- 3' TRIM40 hsa-miR-124star beg:108 end:127 pic:3' TAGTTCCAGG-CGAC-ACTTGTGC 5'& || ||| ||||||.| &5' --------CCAGCTCCTGAACATG 3' TRIM40 hsa-miR-1255a beg:0 end:12 pic:3' TTAGATGAAAGAAACGAGTAGGA 5'& ||.|||||| &5' -------------TGTTCATCC- 3' TRIM40 hsa-miR-1255b beg:0 end:12 pic:3' TTGGTGAAAGAAACGAGTAGGC 5'& ||.|||||| &5' ------------TGTTCATCC- 3' TRIM40 hsa-miR-1255b beg:304 end:326 pic:3' TTGGT-GAAAGAAAC-GAGTAGGC 5'& ||| || || |||||.| &5' --CCATCTCTCACAATCTCATTC- 3' TRIM40 hsa-miR-125a-3p beg:414 end:438 pic:3' CCGAGGGTTCTTG-GAGTGGACA 5'& |.| .| |||||||| &5' -GTTGTCTGTACCACTCACCTG- 3' TRIM40 hsa-miR-125b-2star beg:251 end:271 pic:3' CAGGGTTCTCGGACTGAACACT 5'& .|||.|||| |.|||||| &5' --TCCAGGAGC---ATTTGTGA 3' TRIM40 hsa-miR-125b-2star beg:813 end:835 pic:3' CAGGGTTCTCGGA-CTGAACACT 5'& || || . | ||||||| &5' ---CCTTGATTATAGTCTTGTGA 3' TRIM40 hsa-miR-1261 beg:668 end:690 pic:3' TTCGG-TTTCGGAATAGGTA 5'& .|||| |.||| |||| &5' GAGCCAAGAGCAGCTTCCA- 3' TRIM40 hsa-miR-1261 beg:58 end:72 pic:3' TTCGGTTTCGGAATAGGTA 5'& |||| || |.|||| &5' ---CCAA--CC-TGTCCA- 3' TRIM40 hsa-miR-1262 beg:874 end:883 pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& |||||| &5' ---------------CACCCA- 3' TRIM40 hsa-miR-1263 beg:406 end:430 pic:3' TGAGTCAT-----ACGGTCCCATGGTA 5'& ||||| ||.| |||||| &5' ---CAGTACTTGTTGTCT--GTACCA- 3' TRIM40 hsa-miR-1263 beg:851 end:869 pic:3' TGAGTCATA-CGGTCCCATGGTA 5'& ||||. ||. ||.||| &5' ---CAGTGAAGCT---GTGCCA- 3' TRIM40 hsa-miR-1270 beg:237 end:259 pic:3' TGTGTCGAGAAGGTA-TAGAGGTC 5'& |. .|| |||| .||||||| &5' -CGGGGC----CCATGGTCTCCAG 3' TRIM40 hsa-miR-1275 beg:188 end:204 pic:3' CTGTCGGAGAGGGGGTG 5'& ||||||| |..||| &5' --CAGCCTC-CTTCCA- 3' TRIM40 hsa-miR-1275 beg:472 end:491 pic:3' CTGTCGGAGAGGGGGTG 5'& ||||||||| ||..||. &5' GACAGCCTC-CCTTCAT 3' TRIM40 hsa-miR-1275 beg:764 end:782 pic:3' CTGTCGGAGAGGGGGTG 5'& .||| .|||.||||| &5' -GCAGATTCTTCCCCA- 3' TRIM40 hsa-miR-1278 beg:396 end:416 pic:3' TATCTACTATACG-TGTCATGAT 5'& ||| .||||||| &5' -----TGAGTTCCTGCAGTACT- 3' TRIM40 hsa-miR-1279 beg:881 end:897 pic:3' TCTTTCTTCGTTATACT 5'& |||| ||.|.||| &5' ----AGAAACAGTGTGA 3' TRIM40 hsa-miR-1286 beg:394 end:411 pic:3' TCCCGAGTAGAACCAGGACGT 5'& ||| | ||||||| &5' ---GCTGAGT----TCCTGCA 3' TRIM40 hsa-miR-1287 beg:793 end:810 pic:3' CTGAGCTTGGTGACTAGGTCGT 5'& ||||| .|||||| &5' -----GAACCTA--GTCCAGC- 3' TRIM40 hsa-miR-1291 beg:226 end:247 pic:3' TGACGACCAGAAGTCAGTCCCGGT 5'& |||| ||| .|||.||||| &5' ACTG-TGGA----GGTCGGGGCC- 3' TRIM40 hsa-miR-1293 beg:862 end:883 pic:3' CGTGTTTAGAGGTCTGGTGGGT 5'& || |||| .|.| ||||||| &5' GC-CAAAATTTC---CCACCCA 3' TRIM40 hsa-miR-1294 beg:362 end:386 pic:3' TCTGTTGTTAC---GGTTGGAGTGT 5'& ||.||.|| || |||||||| &5' ---CAGCAGTGACACC-ACCTCACA 3' TRIM40 hsa-miR-1294 beg:178 end:198 pic:3' TCTGTTGTTACGGTTGGAGTGT 5'& .|||.|.| ||||.|||| &5' GGACGATA--GCCAGCCTC--- 3' TRIM40 hsa-miR-1299 beg:191 end:207 pic:3' AGGGAGTGTGTCTTAAGGTCTT 5'& |||| | ||||||.| &5' --CCTC-C------TTCCAGGA 3' TRIM40 hsa-miR-1301 beg:708 end:729 pic:3' CTTCAGTGAGGGTCCGTCGACGTT 5'& ||| ||.. | ||||||| &5' ----TCAGTCTT--GTGGCTGCAA 3' TRIM40 hsa-miR-130astar beg:879 end:897 pic:3' CGTCTGTCATCGTGTTACACTT 5'& |||| |||.||||| &5' ----ACAGAA--ACAGTGTGA- 3' TRIM40 hsa-miR-1321 beg:467 end:487 pic:3' TAGTGTAAG-TGGAGGGAC 5'& ||| .||||||| &5' -TCAAAGACAGCCTCCCT- 3' TRIM40 hsa-miR-1321 beg:43 end:61 pic:3' TAGTGTAAGTGGAGGGAC 5'& | | || |||.||| &5' --CTCTCTCTCCTTCCT- 3' TRIM40 hsa-miR-1322 beg:355 end:376 pic:3' GTCG--TAGTCGTCGTAGTAG 5'& ||| ||||||||.. || &5' -AGCTCATCAGCAGTGACA-- 3' TRIM40 hsa-miR-1324 beg:404 end:425 pic:3' CTTTCACGTATCTTAAGACAGACC 5'& |||| .|||||| &5' -----TGCAGTACTTGTTGTCTG- 3' TRIM40 hsa-miR-138 beg:349 end:369 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& |||| || .| ||.|||| &5' -GGCCCGA---GCT-CATCAGC- 3' TRIM40 hsa-miR-139-5p beg:216 end:237 pic:3' GACCTCTGTGCAC-GTGACATCT 5'& ||| |.| || ||||||.|| &5' -TGG-GGC---TGCCACTGTGGA 3' TRIM40 hsa-miR-146a beg:495 end:520 pic:3' TTGGGT-ACCTTAAGT-CAAGAGT 5'& |||. ||||||||| | ||. &5' -ACCTCTTGGAATTCATGCCCTT- 3' TRIM40 hsa-miR-148a beg:609 end:625 pic:3' TGTTTCAAGACATCACGTGACT 5'& ||||. ||||.|| &5' --------CTGTGTTGCATTG- 3' TRIM40 hsa-miR-148b beg:609 end:625 pic:3' TGTTTCAAGACACTACGTGACT 5'& ||||| ||||.|| &5' --------CTGTGTTGCATTG- 3' TRIM40 hsa-miR-148bstar beg:613 end:634 pic:3' CGGACTCACATAT-----TGTCTTGAA 5'& |||| |.|||||| &5' ------GTGTTGCATTGTATAGAACT- 3' TRIM40 hsa-miR-149star beg:36 end:55 pic:3' CGTGTCGGGGGCAGGGAGGGA 5'& |||||.|| ||.|||.| &5' ---CAGCCTCC-TCTCTCTC- 3' TRIM40 hsa-miR-150star beg:408 end:430 pic:3' GACA-GGGGGTCCGGACATGGTC 5'& || |.. . |.|||||||| &5' --GTACTTGTT-GTCTGTACCA- 3' TRIM40 hsa-miR-152 beg:609 end:625 pic:3' GGTTCAAGACAGTACGTGACT 5'& |||| ||||.|| &5' -------CTGTGTTGCATTG- 3' TRIM40 hsa-miR-181cstar beg:281 end:300 pic:3' CAGGTGAGTTGCCAGCTACCAA 5'& || ||| .|||||| &5' --CCTGTAAAC---TGATGGT- 3' TRIM40 hsa-miR-181d beg:525 end:544 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& ||| || | |||.||| &5' -CCCTCC-----CCTTGAGTGT- 3' TRIM40 hsa-miR-182 beg:852 end:871 pic:3' TCACACTCAAGATGGTAACGGTTT 5'& |||| ||. ||||||| &5' ---GTGAAG-CTG----TGCCAAA 3' TRIM40 hsa-miR-182star beg:613 end:634 pic:3' ATCAACCGTT-CAGATCTTGGT 5'& ||| ||| || ||||||. &5' --GTT-GCATTGTATAGAACT- 3' TRIM40 hsa-miR-182star beg:640 end:663 pic:3' ATCAACCGTTC----AGATCTTGGT 5'& |||| |.||||.|| &5' ----TGGCCCACCCTTTTAGAGCC- 3' TRIM40 hsa-miR-185 beg:35 end:56 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |||| || ||| ||||||| &5' TCAGC--CT-CCTCTCTCTCC- 3' TRIM40 hsa-miR-185star beg:176 end:198 pic:3' CTGGTCTCCTTTCGGTCGGGGA 5'& . || || ||||||||.| &5' --TTGGACGATAGCCAGCCTC- 3' TRIM40 hsa-miR-185star beg:97 end:120 pic:3' CTGGTCTCCTTTCGGTCGGGGA 5'& |. .|| ||||||.||| &5' --CTTCGGGCCTGCCAGCTCCT 3' TRIM40 hsa-miR-188-3p beg:530 end:552 pic:3' ACGTTTGGG-----ACGTACACCCTC 5'& ||| ||.| |||||| &5' ------CCCTTGAGTGTAAGTGGGA- 3' TRIM40 hsa-miR-1909 beg:392 end:410 pic:3' GCCACTCGTGGGC-CGGGGACGC 5'& || |.| |..||||| &5' -------CAGCTGAGTTCCTGC- 3' TRIM40 hsa-miR-1909star beg:425 end:445 pic:3' GTCCCGTCCGTGG-CCGTGAGT 5'& || |||| ||||||.| &5' -----CACTCACCTGGCACTTA 3' TRIM40 hsa-miR-190b beg:108 end:130 pic:3' TTGGGTTATAG-TTTGTATAGT 5'& |||. .|||||.||| &5' ---CCAGCTCCTGAACATGTCA 3' TRIM40 hsa-miR-1914star beg:648 end:668 pic:3' GGAGGGTCACGCCCTGGGGAGG 5'& |||...|| .||||||| &5' CCTTTTAGA-----GCCCCTCC 3' TRIM40 hsa-miR-193a-5p beg:835 end:855 pic:3' AGTAGAGCGGG--CG-TTTCTGGGT 5'& ||. || .|.|||||| &5' --------CCTAAGCTGAGGACCCA 3' TRIM40 hsa-miR-193a-5p beg:687 end:711 pic:3' AGTAGAGCGGG-------CGTTTCTGGGT 5'& ||| |||.||.||| &5' -------GCCAACAACAAGCAGAGGCCC- 3' TRIM40 hsa-miR-196astar beg:405 end:423 pic:3' GAGTCCGTCAAAGAACAACGGC 5'& ||||| |||||||.| &5' -----GCAGTA-CTTGTTGTC- 3' TRIM40 hsa-miR-19b-1star beg:717 end:742 pic:3' CGACCTACGT--TTGGACGTTTTGA 5'& ||| |||| |||||| || || &5' --TGGCTGCAAGAACCTG-AATTCT 3' TRIM40 hsa-miR-2110 beg:763 end:783 pic:3' GTGAGTCGCCGGCAAAGGGGTT 5'& ||| | |||||||| &5' -----AGCAGATTCTTCCCCAA 3' TRIM40 hsa-miR-2114star beg:205 end:226 pic:3' TTCAGGGAACGAACTCCGAGC 5'& |.| |.| ||||||.|||| &5' AGG-CTCATGCTTGGGGCT-- 3' TRIM40 hsa-miR-2115 beg:748 end:769 pic:3' AGGTAGTC-CTCAGTACCTTCGA 5'& ||. || ||| | ||||||| &5' -CCG--AGTGAG-CTTGGAAGC- 3' TRIM40 hsa-miR-2116 beg:779 end:801 pic:3' TCTGGA--GGATACGATTCTTGG 5'& ||. || | |||||||| &5' --ACTGAGCCG--GATAAGAACC 3' TRIM40 hsa-miR-217 beg:398 end:414 pic:3' AGGTTAGTCAAGGACTACGTCAT 5'& |||||| ||||||| &5' -------AGTTCC---TGCAGTA 3' TRIM40 hsa-miR-218-1star beg:657 end:677 pic:3' GGTACCACGAACTG---CCTTGGTA 5'& || |||.||| &5' -------GCCCCTCCTAGGAGCCA- 3' TRIM40 hsa-miR-222 beg:663 end:686 pic:3' TGGGTCATCGG-TCTACATCGA 5'& ||.|| |||| ||| |||| &5' -CCTAGGAGCCAAGAGC-AGCT 3' TRIM40 hsa-miR-223 beg:283 end:297 pic:3' ACCCCATAAACTGTTTGACTGT 5'& || .|||||||. &5' ---------TG-TAAACTGAT- 3' TRIM40 hsa-miR-224star beg:120 end:136 pic:3' ACATCAGTGATCCCGTGGTAAAA 5'& ||. |||||||| &5' ------CATGT---CACCATTT- 3' TRIM40 hsa-miR-23a beg:886 end:897 pic:3' CCTTTAGGGACCGTTACACTA 5'& ||.||||| &5' ------------CAGTGTGA- 3' TRIM40 hsa-miR-23bstar beg:840 end:855 pic:3' TTTAGTCGTACGGTCCTTGGGT 5'& ||. |.||||| &5' ----------GCTGAGGACCCA 3' TRIM40 hsa-miR-24 beg:769 end:790 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||.| | ||||||||| &5' ---TTCTTCCCCAACTGAGCC- 3' TRIM40 hsa-miR-27b beg:543 end:559 pic:3' CGTCTTGAATCGGTGACACTT 5'& | |.|. |||||| &5' GTGGGAT-------CTGTGA- 3' TRIM40 hsa-miR-28-5p beg:394 end:408 pic:3' GAGTTATCTGAC-ACTCGAGGAA 5'& | ||||.|||| &5' -----------GCTGAGTTCCT- 3' TRIM40 hsa-miR-2861 beg:55 end:79 pic:3' GGCGGGTGG-C-GGTCCGGGG 5'& || || ||| | ||||||||| &5' CCTCCAACCTGTCCAGGCCCC 3' TRIM40 hsa-miR-301b beg:604 end:625 pic:3' CGAAACTGTTATAGTAACGTGAC 5'& ||.||| ..|||||.|| &5' ----TGGCAACTGTGTTGCATTG 3' TRIM40 hsa-miR-302a beg:249 end:267 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& || ||| |.||||.||. &5' TCTCCA-------GGAGCATTTG 3' TRIM40 hsa-miR-302a beg:422 end:445 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& .|||| || .||||||| &5' -TACCACT-CACCT-GGCACTTA 3' TRIM40 hsa-miR-302c beg:424 end:445 pic:3' GGTGACTTTGTACCTTCGTGAAT 5'& ||||| || .||||||| &5' CCACT----CACCT-GGCACTTA 3' TRIM40 hsa-miR-302d beg:250 end:267 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& ||| || || ||||.||. &5' ---CTC---CA-GG-AGCATTTG 3' TRIM40 hsa-miR-302d beg:425 end:445 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& |||||| .||||||| &5' -CACTCACCT-----GGCACTTA 3' TRIM40 hsa-miR-302e beg:754 end:770 pic:3' TTCGTACCTTCGTGAAT 5'& .||| |||||||| &5' GAGCTTGGAAGCA---- 3' TRIM40 hsa-miR-302f beg:754 end:771 pic:3' TTTGTACCTTCGTTAAT 5'& .|.| ||||||||. &5' GAGCTTGGAAGCAG--- 3' TRIM40 hsa-miR-30c-1star beg:862 end:879 pic:3' CCTCATTTGTTGGG---AGAGGGTC 5'& .|| |.||||| &5' ----------GCCAAAATTTCCCA- 3' TRIM40 hsa-miR-3118 beg:134 end:154 pic:3' TCTTAAAAGTATTAC-GTCAGTGT 5'& |||||. ||||||. &5' ------TTCATGTCCACAGTCAT- 3' TRIM40 hsa-miR-3120 beg:442 end:460 pic:3' ACGGACAGATGTGAACGACAC 5'& |.||. |||.|||| &5' ------TTTATTATTGTTGTG 3' TRIM40 hsa-miR-3132 beg:41 end:68 pic:3' AGGAGACTCGAGGAA-GAGA-TGGGT 5'& |||||| |||||| ||| |||. &5' TCCTCTCT-CTCCTTCCTCCAACCT- 3' TRIM40 hsa-miR-3138 beg:127 end:148 pic:3' TGAGGGAGATGGAGTGACAGGTGT 5'& || |.| |.||| |||||||| &5' ---CCATTT-CTTCA-TGTCCACA 3' TRIM40 hsa-miR-3139 beg:100 end:121 pic:3' TTGTCCGTAGACAACTCGAGGAT 5'& |.||| ||| |||||||. &5' --CGGGC--CTGCC-AGCTCCTG 3' TRIM40 hsa-miR-3140 beg:661 end:682 pic:3' TGATGGA-CTTAAGGGTTTTCGA 5'& || ||| |.| ||||.||| &5' -CT-CCTAGGAG--CCAAGAGC- 3' TRIM40 hsa-miR-3141 beg:477 end:498 pic:3' AGGA-GGAGGTGGGCGGGAG 5'& ||| |||.||. .|||| &5' -CCTCCCTTCATGA-TCCTC 3' TRIM40 hsa-miR-3141 beg:52 end:72 pic:3' AGGAGGAGG-TGGGCGGGAG 5'& |.|||||| |||.|.|| &5' -CTTCCTCCAACCTGTCC-- 3' TRIM40 hsa-miR-3141 beg:631 end:649 pic:3' AGGAGGAGG--TGGGCGGGAG 5'& ||||||| .|. |||| &5' --CTCCTCCTTGCTGGCCC-- 3' TRIM40 hsa-miR-3141 beg:770 end:790 pic:3' AGGAGGAGG-TGGG-CGGGAG 5'& ||.||| || ||. ||| &5' TCTTCC-CCAACTGAGCC--- 3' TRIM40 hsa-miR-3154 beg:629 end:657 pic:3' AGACGAGGGTTGAG-----GGGAAGAC 5'& || ||||. .|| |||||.| &5' -CTCCTCCTTGCTGGCCCACCCTTTT- 3' TRIM40 hsa-miR-3167 beg:253 end:276 pic:3' TGTGGTCA---TAAAGACTTTAGGA 5'& |||| |||| |||||||. &5' ---CCAGGAGCATTTGTGAAATCT- 3' TRIM40 hsa-miR-3175 beg:38 end:56 pic:3' TGCAGTGACGCA--AGAGAGGGGC 5'& || ||||||.|| &5' --------GCCTCCTCTCTCTCC- 3' TRIM40 hsa-miR-3179 beg:46 end:59 pic:3' TGCAAATTTAAAGTGGGGAAGA 5'& || |.||||| &5' -----------TCTCTCCTTC- 3' TRIM40 hsa-miR-3179 beg:645 end:657 pic:3' TGCAAATTTAAAGTGGGGAAGA 5'& |||||.||. &5' ------------CACCCTTTT- 3' TRIM40 hsa-miR-3181 beg:338 end:359 pic:3' GGCCGC-GGCTC-CCGGGCTA 5'& ||| |.|| ||||||| &5' --GGCCTCTGAATGGCCCGA- 3' TRIM40 hsa-miR-3186-5p beg:146 end:167 pic:3' TTCGGTGCATCTGTCTGCGGAC 5'& ||.||. ||.||||| &5' -AGTCATCACCT--GATGCCTG 3' TRIM40 hsa-miR-3190-3p beg:186 end:204 pic:3' GAGAGACCGGCAGATGGAAGGT 5'& ||| | ||||||| &5' -------GCCAGCCTCCTTCCA 3' TRIM40 hsa-miR-3191 beg:235 end:258 pic:3' GACAGA-CCGGTCGATGCAGGGGT 5'& ||| |||| |. |||.||| &5' --GTCGGGGCCCA-TG-GTCTCCA 3' TRIM40 hsa-miR-323b-5p beg:464 end:483 pic:3' ACGCTTGAGTGGTGCCTGTTGGA 5'& .||||| ||||.||| &5' ----GACTCAAA---GACAGCCT 3' TRIM40 hsa-miR-331-5p beg:824 end:842 pic:3' CCTAGGGACCCTGGTATGGATC 5'& .|.|| || .|||||| &5' ----TCTTGTGA--GTACCTA- 3' TRIM40 hsa-miR-339-5p beg:579 end:598 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& .|| || ||.|||| &5' ----GGCAAA-GGT-GATAGGG- 3' TRIM40 hsa-miR-365star beg:219 end:241 pic:3' TGTCGACGG-GG-ACTTTCAGGGA 5'& .|||||| |. ||.|.||| &5' --GGCTGCCACTGTGGAGGTC--- 3' TRIM40 hsa-miR-377star beg:30 end:46 pic:3' CTTAAGTGGTTCCCGTTGGAGA 5'& ||||| ||.|||| &5' ----TCACCT----CAGCCTC- 3' TRIM40 hsa-miR-377star beg:465 end:484 pic:3' CTTAAGTG-GTTCCCGTTGGAGA 5'& || ||| | ||.|||| &5' ------ACTCAAAGACAGCCTC- 3' TRIM40 hsa-miR-382 beg:670 end:688 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& .||| ||.||.|||| &5' -------GCCAAGAGCAGCTTC 3' TRIM40 hsa-miR-423-5p beg:647 end:667 pic:3' TTTCAGAGCGAGAGA--CGGGGAGT 5'& | ||.|. ||||||| &5' -------CCCTTTTAGAGCCCCTC- 3' TRIM40 hsa-miR-4253 beg:126 end:146 pic:3' TGGGGGACCTGTACGGGA 5'& ||| ||||.|| &5' ACCATTTCTTCATGTCC- 3' TRIM40 hsa-miR-4253 beg:496 end:519 pic:3' TGGGGGACCT---GTACGGGA 5'& |||.|.|||| |||||||| &5' ACCTCTTGGAATTCATGCCCT 3' TRIM40 hsa-miR-4254 beg:239 end:260 pic:3' CTCTACCACCTC----ATC-GAGGTCCG 5'& ||.| |.| ||||||| &5' --------GGGGCCCATGGTCTCCAGG- 3' TRIM40 hsa-miR-4255 beg:272 end:295 pic:3' AGGTAGA---GACTTGTGAC 5'& |||||.| ||| |||| &5' TCCATTTTGCCTGTAAACTG 3' TRIM40 hsa-miR-4255 beg:334 end:352 pic:3' AGGTA--GAGACTTGTGAC 5'& |||| |||||||. &5' TCCAGGCCTCTGAAT---- 3' TRIM40 hsa-miR-4257 beg:328 end:349 pic:3' GAGTC-AGGGG---TGGAGACC 5'& .| |||.| .|||||| &5' ---GGATCCTCCAGGCCTCTG- 3' TRIM40 hsa-miR-4257 beg:43 end:62 pic:3' GAGTCAGGGGT-GGAGACC 5'& ||| ||.|| |||| &5' CTCTCTCTCCTTCCTC--- 3' TRIM40 hsa-miR-4259 beg:376 end:401 pic:3' AGGACTGGGGATCT-GGGTTGAC 5'& ||| || . |.|| ||||.||| &5' -CCTCACATGTGGAGCCCAGCTG 3' TRIM40 hsa-miR-425star beg:100 end:122 pic:3' CCCGCCTGTGCTGTA-AGGGCTA 5'& |||.| .| || |||.|| &5' ---CGGGCCTGCCAGCTCCTGA- 3' TRIM40 hsa-miR-4260 beg:767 end:783 pic:3' ACCCTGAGGTACGGGGTTC 5'& ||.||. |||||| &5' ---GATTCTT--CCCCAA- 3' TRIM40 hsa-miR-4263 beg:641 end:661 pic:3' CCGGTTCCGTGAATCTTA 5'& |||| .|||||. &5' GGCCCACCCTTTTAGAG- 3' TRIM40 hsa-miR-4263 beg:748 end:767 pic:3' CCGGTTC-CGTGAATCTTA 5'& ||.|| | .|||.||| &5' --CCGAGTGAGCTTGGAA- 3' TRIM40 hsa-miR-4271 beg:40 end:63 pic:3' GGGGTG-GAAAAGAAGGGGG 5'& |.|| | || |||||.|| &5' CTCCTCTCTCTCCTTCCTCC 3' TRIM40 hsa-miR-4277 beg:852 end:874 pic:3' CACA-TGACACGAGTCTTGACG 5'& ||| .|||||| || ||.| &5' GTGAAGCTGTGC-CAAAATT-- 3' TRIM40 hsa-miR-4281 beg:191 end:208 pic:3' GGGGGGAGGGGCCCTGGG 5'& ||.|||.|| |||| &5' -CCTCCTTCCA-GGAC-- 3' TRIM40 hsa-miR-4281 beg:477 end:496 pic:3' GGGGGGAGGGGCCCTGGG 5'& ||.||||.| ||.|| &5' CCTCCCTTCAT--GATCC 3' TRIM40 hsa-miR-4283 beg:26 end:46 pic:3' TTTGAGC-GACTCGGGGT 5'& |..||| || ||||.| &5' AGGCTCACCTCAGCCTC- 3' TRIM40 hsa-miR-4295 beg:611 end:625 pic:3' TTCCTTTTGTAACGTGAC 5'& . |||||.|| &5' -------GTGTTGCATTG 3' TRIM40 hsa-miR-4296 beg:156 end:173 pic:3' ACT-CGGACTCGGGTGTA 5'& || |||||| ||| | &5' -GATGCCTGA-CCCTC-- 3' TRIM40 hsa-miR-4298 beg:38 end:60 pic:3' GACGGAGGAG-GAGGACAGGGTC 5'& |||||||| |||. |.|| &5' --GCCTCCTCTCTCTCCTTCC-- 3' TRIM40 hsa-miR-4298 beg:49 end:72 pic:3' GACGGAGGAGGA-GGACAGGGTC 5'& || |.|||||| ||||||| &5' CTCCTTCCTCCAACCTGTCC--- 3' TRIM40 hsa-miR-4299 beg:350 end:369 pic:3' CGGAGAGTACAGTGGTCG 5'& ||| | |||.|||| &5' GCC-CGAGC-TCATCAGC 3' TRIM40 hsa-miR-4299 beg:130 end:151 pic:3' CGGAG-AGTACAGTGGTCG 5'& ..|| ||||||| |||. &5' -TTTCTTCATGTCCACAGT 3' TRIM40 hsa-miR-4300 beg:108 end:120 pic:3' CTTCATCAGGTCGAGGGT 5'& ||||||||. &5' --------CCAGCTCCT- 3' TRIM40 hsa-miR-4300 beg:667 end:690 pic:3' CTTCA--TCAGGTCGAGGGT 5'& |.|| || |||||.||| &5' GGAGCCAAGAGCAGCTTCCA 3' TRIM40 hsa-miR-4301 beg:535 end:552 pic:3' AGTGTTCACTTCATCACCCT 5'& .|||| ||||||| &5' ----GAGTGTA--AGTGGGA 3' TRIM40 hsa-miR-4302 beg:635 end:651 pic:3' GAGCGACTCGGTGTGACC 5'& ||.|||| ||| ||| &5' CTTGCTG-GCC-CAC--- 3' TRIM40 hsa-miR-4306 beg:38 end:56 pic:3' ATGACGGAA---AGAGAGGT 5'& |||| ||||||| &5' ----GCCTCCTCTCTCTCC- 3' TRIM40 hsa-miR-431 beg:558 end:586 pic:3' ACG-----TAC-TGCCGGACGTTCTGT 5'& ||| ||| |.|| .|||.|| &5' TGCTTCTAATGAATGGAA--TAAGGCA 3' TRIM40 hsa-miR-4318 beg:136 end:151 pic:3' TCGTACATGGGTGTCAC 5'& ||||| ||||||| &5' --CATGT--CCACAGT- 3' TRIM40 hsa-miR-4330 beg:336 end:354 pic:3' CGTTCCGAGACTAGACTCC 5'& ||.| |||||| ||. &5' -CAGGCCTCTGAA-TGG-- 3' TRIM40 hsa-miR-449bstar beg:703 end:726 pic:3' TCACCGTCCCATCA--ACACCGAC 5'& ||| ||| |||||||| &5' ---GGCCCTC-AGTCTTGTGGCTG 3' TRIM40 hsa-miR-454star beg:578 end:599 pic:3' CGTCTCTGTTATAACTATCCCA 5'& ||.||| ||||||||| &5' ----AGGCAAAGGTGATAGGGT 3' TRIM40 hsa-miR-485-5p beg:24 end:46 pic:3' CTTAAGT---AGTGCCGGTCGGAGA 5'& |||| |||| .||||||| &5' ---TTCAGGCTCACC-TCAGCCTC- 3' TRIM40 hsa-miR-489 beg:585 end:604 pic:3' CGACGGCATATACACTACAGTG 5'& | .| ||| |.|||||| &5' ---GGTG-ATAG--GGTGTCAC 3' TRIM40 hsa-miR-499-5p beg:12 end:35 pic:3' TTTGT--AGTGACGTTC-AGAATT 5'& ..||| ||||| ||.| || &5' GGACACCTCACTTCAGGCTC---- 3' TRIM40 hsa-miR-511 beg:448 end:467 pic:3' ACTGACGTCTCGTTTTCTGTG 5'& |.||. | .|||||| &5' --ATTGTT--GTGGAAGACA- 3' TRIM40 hsa-miR-516a-3p beg:748 end:770 pic:3' TGGGAG-ACTTT--CCTTCGT 5'& |||| |||. ||||||| &5' ACCCGAGTGAGCTTGGAAGCA 3' TRIM40 hsa-miR-516b beg:190 end:206 pic:3' TTTCACGAAGAATGGAGGTCTA 5'& || || |.|||||. &5' -----GCCTC---CTTCCAGG- 3' TRIM40 hsa-miR-516bstar beg:746 end:770 pic:3' TGGGAG-ACTTT--CCTTCGT 5'& |||| |||. ||||||| &5' ACCCGAGTGAGCTTGGAAGCA 3' TRIM40 hsa-miR-520a-3p beg:247 end:267 pic:3' TGTCAGGTTTCCCTTCGTGAAA 5'& |..|||. ||| ||||.|| &5' ATGGTCTCCAGG--AGCATTT- 3' TRIM40 hsa-miR-520a-3p beg:424 end:444 pic:3' TGTCAGGTTTCCCT-TCGTGAAA 5'& ||| .|||||| &5' -----CCACTCACCTGGCACTT- 3' TRIM40 hsa-miR-520b beg:424 end:444 pic:3' GG-GAGATTTTCCTTCGTGAAA 5'& || ||| .|||||| &5' CCACTCACCT----GGCACTT- 3' TRIM40 hsa-miR-520b beg:249 end:267 pic:3' GGGAGATTTTCCTTCGTGAAA 5'& .||| ||| ||||.|| &5' -TCTCC---AGG-AGCATTT- 3' TRIM40 hsa-miR-520c-3p beg:249 end:267 pic:3' TGGGAGATTTTCCTTCGTGAAA 5'& .||| ||| ||||.|| &5' --TCTCC---AGG-AGCATTT- 3' TRIM40 hsa-miR-520c-3p beg:423 end:444 pic:3' TGG-GAGATTTTCCTTCGTGAAA 5'& ||| ||| .|||||| &5' ACCACTCACCT----GGCACTT- 3' TRIM40 hsa-miR-520d-3p beg:249 end:267 pic:3' TGGGTGGTTTCTCTTCGTGAAA 5'& .| || ||.||||.|| &5' --TCTCC----AGGAGCATTT- 3' TRIM40 hsa-miR-520d-3p beg:426 end:444 pic:3' TGGGTGGTTTCTCTTCGTGAAA 5'& ||.|||| .|||||| &5' ACTCACCT------GGCACTT- 3' TRIM40 hsa-miR-520e beg:249 end:267 pic:3' GGGAGTTTTTCCTTCGTGAAA 5'& .||| ||| ||||.|| &5' -TCTCC---AGG-AGCATTT- 3' TRIM40 hsa-miR-520e beg:424 end:444 pic:3' GG-GAGTTTTTCCTTCGTGAAA 5'& || |||| .|||||| &5' CCACTCACCT----GGCACTT- 3' TRIM40 hsa-miR-539 beg:119 end:140 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& ||| .|| ||||||.| &5' ACATGTCACC----ATTTCTTC 3' TRIM40 hsa-miR-542-5p beg:0 end:16 pic:3' AGAGCACTGTACTACTAGGGGCT 5'& || |||||.|. &5' ----------TGTTCATCCCTGG 3' TRIM40 hsa-miR-551a beg:385 end:410 pic:3' ACCTTTGGTT--CTCACCCAGCG 5'& ||||. |||. |||| .|| &5' TGGAGCCCAGCTGAGTTCC-TGC 3' TRIM40 hsa-miR-552 beg:416 end:438 pic:3' AACAGAT-TGGTCAGTGGACAA 5'& ||||||. |||| ||||||| &5' TTGTCTGTACCACTCACCTG-- 3' TRIM40 hsa-miR-558 beg:667 end:687 pic:3' TAAAACCATG----TCGTCGAGT 5'& || .| |||||||. &5' -----GGAGCCAAGAGCAGCTT- 3' TRIM40 hsa-miR-564 beg:848 end:868 pic:3' CGGACGACTGTGGCACGGA 5'& || ||| .|.||||| &5' -CCCAGTGAAGCTGTGCC- 3' TRIM40 hsa-miR-571 beg:96 end:118 pic:3' GAGTGAGTCTAC-CGGTTGAGT 5'& || .||.|. ||||.||| &5' -TC-TTCGGGCCTGCCAGCTC- 3' TRIM40 hsa-miR-573 beg:5 end:31 pic:3' GACTAGT--CAATGTGTAGTGAAGTC 5'& ||| | |||| ||||||||| &5' ---ATCCCTGGGACACCTCACTTCAG 3' TRIM40 hsa-miR-582-5p beg:602 end:617 pic:3' TCATTGACCAACTTGTTGACATT 5'& |||| |||||||. &5' -----CTGG-----CAACTGTG- 3' TRIM40 hsa-miR-593 beg:690 end:709 pic:3' TCTTTGGGG-TCGTCTCTGT 5'& ||| | |||||||.| &5' ---AACAACAAGCAGAGGC- 3' TRIM40 hsa-miR-593 beg:386 end:403 pic:3' TCTTTGGGGTCGTCTCTGT 5'& |.|. |||||| ||| &5' -GGAG-CCCAGCTGAG--- 3' TRIM40 hsa-miR-597 beg:356 end:377 pic:3' TGTCACCAGTAG-C-TCACTGTGT 5'& | ||||| | |||||||| &5' -----GCTCATCAGCAGTGACAC- 3' TRIM40 hsa-miR-601 beg:54 end:77 pic:3' GAGGAGGTTGT-TAGGATCTGGT 5'& ||||||||| .||| ||.|| &5' -TCCTCCAACCTGTCC-AGGCC- 3' TRIM40 hsa-miR-621 beg:636 end:648 pic:3' TCCATTCGCGACAACGATCGG 5'& |||||.||| &5' ------------TTGCTGGCC 3' TRIM40 hsa-miR-626 beg:458 end:481 pic:3' TTCTGTAAAAG--TCTGTCGA 5'& |||||| ||||||| &5' AAGACAGACTCAAAGACAGC- 3' TRIM40 hsa-miR-627 beg:17 end:37 pic:3' AGGAGAAAAGAATCTCTGAGTG 5'& |||| ||| ||.||||| &5' -CCTCACTTC----AGGCTCAC 3' TRIM40 hsa-miR-637 beg:698 end:715 pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& |||||| ||||.|||| &5' --GCAGAG-------GCCCTCAGT 3' TRIM40 hsa-miR-637 beg:667 end:691 pic:3' TGCGTCTCGGG-CTT-TCGGGGGTCA 5'& .||||| ||. |||..|||| &5' ----GGAGCCAAGAGCAGCTTCCAG- 3' TRIM40 hsa-miR-639 beg:356 end:374 pic:3' TGTCGCGAGCGTTGG-CGTCGCTA 5'& |||| |.| ||||.|| &5' -----GCTC---ATCAGCAGTGA- 3' TRIM40 hsa-miR-639 beg:840 end:859 pic:3' TGTCGCGAGCG-TTGGCGTCGCTA 5'& ||| | .||| |||.|| &5' -----GCT-GAGGACC-CAGTGA- 3' TRIM40 hsa-miR-647 beg:793 end:812 pic:3' CTTCCTTCACTCACGTCGGTG 5'& ||| ||| |||||| &5' ----GAACCTAGTCCAGCCA- 3' TRIM40 hsa-miR-654-5p beg:20 end:38 pic:3' CGTGTACAAGACGCCGGGTGGT 5'& ||| ||| |||.|||| &5' -CAC---TTCA--GGCTCACC- 3' TRIM40 hsa-miR-659 beg:659 end:679 pic:3' ACCCCTGGGAGGGA-CTTGGTTC 5'& ||||||. ||.||||| &5' ------CCCTCCTAGGAGCCAAG 3' TRIM40 hsa-miR-664star beg:181 end:193 pic:3' TAGGTTAGTAAAAGGGATCGGTCA 5'& | ||||||| &5' -------------CGATAGCCAG- 3' TRIM40 hsa-miR-665 beg:26 end:48 pic:3' TCCCC--GGAGTCGGAGGACCA 5'& ||| |||||||||||| &5' AGGCTCACCTCAGCCTCCT--- 3' TRIM40 hsa-miR-668 beg:354 end:376 pic:3' CATCACCCGGCTCGG-----C-TCACTGT 5'& ||||||. | ||||||| &5' --------CCGAGCTCATCAGCAGTGACA 3' TRIM40 hsa-miR-708 beg:390 end:408 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& ||||||| .||.|||| &5' CCCAGCT-------GAGTTCCT- 3' TRIM40 hsa-miR-708 beg:100 end:120 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& | .|| || ||||||| &5' -CGGGCC----TGCCAGCTCCT- 3' TRIM40 hsa-miR-758 beg:296 end:318 pic:3' CCAATCACCTGGTCC--AGTGTTT 5'& || ||||| ||| |||||| &5' GG-TAGTGC-CCATCTCTCACAA- 3' TRIM40 hsa-miR-762 beg:27 end:46 pic:3' CGAGCCGGGGCCGGGGTCGGGG 5'& |||.| ||.|||||.| &5' ----GGCTCA--CCTCAGCCTC 3' TRIM40 hsa-miR-765 beg:38 end:59 pic:3' GTAGTGGAAGGA---AGAGGAGGT 5'& .|| |||| ||||||.| &5' ----GCC-TCCTCTCTCTCCTTC- 3' TRIM40 hsa-miR-886-5p beg:158 end:179 pic:3' GGCGAACTCGATTGAGGCTGGGC 5'& .|| ||| | |||.|||.| &5' -TGCCTGACC---CTCTGACTC- 3' TRIM40 hsa-miR-920 beg:670 end:689 pic:3' ATGACGAAGG-TGTCGAGGGG 5'& || .|||||.|| &5' ----GCCAAGAGCAGCTTCC- 3' TRIM40 hsa-miR-920 beg:103 end:120 pic:3' ATGACGAAGGTGTCGAGGGG 5'& || | | |||||||. &5' ----GCCTGC-CAGCTCCT- 3' TRIM40 hsa-miR-92a-2star beg:860 end:882 pic:3' CATTACGTTGTTTAGGGGTGGG 5'& .||| || |.||||||| &5' ---GTGCCAAAATTTCCCACCC 3' TRIM40 hsa-miR-93star beg:349 end:372 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& || | ||| |||||||| &5' -GGCCCGAGCTCA-TCAGCAGT 3' TRIM40 hsa-miR-96 beg:851 end:871 pic:3' TCGTTTTTACACGATCACGGTTT 5'& || || ||| |||||||| &5' AGTGAA-----GCT-GTGCCAAA 3' TRIM40 hsa-miR-99bstar beg:746 end:763 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& ||||. || .||||||| &5' ---ACCCG-AG---TGAGCTTG 3' TRIM40 hsv1-miR-H4 beg:729 end:745 pic:3' ACGAACGGACAGTTTGAGATGG 5'& |||| ||.|||.|| &5' ------CCTG---AATTCTGCC 3' TRIM40 hsv1-miR-H4star beg:571 end:587 pic:3' TGATCGCTCAATCTG--TCCGTTC 5'& |.|| |||||| &5' ----------TGGAATAAGGCAA- 3' TRIM40 hsv2-miR-H10 beg:28 end:47 pic:3' GGCGGGTGGGGGCGTGGG 5'& ||.||||.| || .|| &5' --GCTCACCTCAGCCTCC 3' TRIM40 hsv2-miR-H22 beg:57 end:79 pic:3' CGGGTGGGTGCAGGTCTGGGGA 5'& .||| || .||||||.|||| &5' -TCCAACC-TGTCCAGGCCCC- 3' TRIM40 hsv2-miR-H22 beg:330 end:348 pic:3' CGGGTGGGTGCAGGTCTGGGGA 5'& |.|| |||||.||.|| &5' ----ATCC---TCCAGGCCTCT 3' TRIM40 hsv2-miR-H4-5p beg:748 end:763 pic:3' CGTACGCACGGCTCACTTGAG 5'& ||||||||.||. &5' ---------CCGAGTGAGCTT 3' TRIM40 hsv2-miR-H5 beg:186 end:201 pic:3' CCAGTCCACCGGGCTCGGGGGGG 5'& ||| ||||.||.. &5' ---------GCC--AGCCTCCTT 3' TRIM40 hsv2-miR-H5 beg:25 end:49 pic:3' CCAGTCCACC-GGGCTCGGGGGGG 5'& ||||| ||. ||||.||.| &5' --TCAGGCTCACCTCAGCCTCCTC 3' TRIM40 kshv-miR-K12-10astar beg:328 end:345 pic:3' TCACCACCATAGCGGGGTTCGG 5'& || ||| |.|||.||| &5' ------GG-ATC-CTCCAGGCC 3' TRIM40 kshv-miR-K12-1 beg:805 end:835 pic:3' CGAATGTGGGTCAA-----AGGACATTA 5'& || |||||. ||.|||.| &5' GCCAACACCTTGATTATAGTCTTGTGA- 3' TRIM40 kshv-miR-K12-11star beg:541 end:561 pic:3' GGATCTTTACAAATTCGACACTGG 5'& ||.|| .| |||||||. &5' -----AAGTGG--GATCTGTGACT 3' TRIM40 kshv-miR-K12-12star beg:521 end:537 pic:3' AGTTGGTCCCGTGGGAGGGGGT 5'& || ||||||||. &5' --------GGTCCCCTCCCCT- 3' TRIM40 kshv-miR-K12-12star beg:762 end:782 pic:3' AGTTGGTCCCGTGGGAGGGGGT 5'& || ||| |..||.||||| &5' --AAGCAG---ATTCTTCCCCA 3' TRIM40 kshv-miR-K12-12star beg:39 end:64 pic:3' AGTTGGTCCCGT----GGGAGGGGGT 5'& |.|| ||.|||.||| &5' --AGCCTCCTCTCTCTCCTTCCTCCA 3' TRIM40 kshv-miR-K12-5 beg:81 end:103 pic:3' TGGCCGTTCAAGGTC-CGTAGGAT 5'& ||. |||| |||||.| &5' ---GGTCTAC-CCAGTGCATCTT- 3' TRIM40 mcv-miR-M1-5p beg:757 end:779 pic:3' TCACATGGATCT----TTAAGAAGGT 5'& .|.|.|| .|||||||| &5' -----GCTTGGAAGCAGATTCTTCC- 3' TRIM40 sv40-miR-S1-5p beg:648 end:667 pic:3' TTCCGAGTAAAGTC-CGGGGAGT 5'& | |||.|| ||||||| &5' ------CCTTTTAGAGCCCCTC- 3' TRIM40 sv40-miR-S1-5p beg:466 end:490 pic:3' TTCCGAGTAAA-GTCC--GGGGAGT 5'& |||| ||| |||.||| &5' ----CTCAAAGACAGCCTCCCTTCA 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRIM40 High_conserved miR-132/212/212-3p chr6:30104737 7-mer-m8 7 5pUTR, ncRNA TRIM40 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr6:30116033 7-mer-A1 16 3pUTR TRIM40 High_conserved miR-96/507/1271 chr6:30104337 7-mer-A1 9 ncRNA TRIM40 High_conserved miR-96/507/1271 chr6:30116459 8-mer 9 3pUTR TRIM40 High_conserved miR-140/140-5p/876-3p/1244 chr6:30103897 7-mer-m8 13 5pUTR TRIM40 High_conserved miR-142-3p chr6:30105156 7-mer-A1 44 CDS TRIM40 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr6:30104256 7-mer-m8 11 ncRNA TRIM40 High_conserved miR-182 chr6:30104337 7-mer-A1 9 ncRNA TRIM40 High_conserved miR-182 chr6:30116459 7-mer-A1 9 3pUTR TRIM40 High_conserved miR-203 chr6:30104530 7-mer-A1 16 5pUTR, ncRNA TRIM40 High_conserved miR-205/205ab chr6:30104881 7-mer-A1 40 CDS, ncRNA TRIM40 High_conserved miR-217 chr6:30116002 7-mer-A1 4 3pUTR TRIM40 High_conserved miR-221/222/222ab/1928 chr6:30103954 7-mer-A1 20 5pUTR, ncRNA TRIM40 High_conserved miR-223 chr6:30105131 7-mer-m8 7 CDS TRIM40 High_conserved miR-24/24ab/24-3p chr6:30104292 7-mer-A1 7 ncRNA TRIM40 High_conserved miR-24/24ab/24-3p chr6:30116379 7-mer-m8 7 3pUTR TRIM40 High_conserved miR-29abcd chr6:30105008 7-mer-A1 2 CDS TRIM40 High_conserved miR-103a/107/107ab chr6:30104255 7-mer-m8 11 ncRNA TRIM40 High_conserved miR-338/338-3p chr6:30115305 7-mer-m8 9 CDS TRIM40 High_conserved miR-375 chr6:30104122 7-mer-A1 9 ncRNA TRIM40 High_conserved miR-10abc/10a-5p chr6:30104802 8-mer 9 5pUTR, ncRNA TRIM40 High_conserved miR-128/128ab chr6:30115824 7-mer-m8 13 3pUTR TRIM40 Medium_conserved miR-504/4725-5p chr6:30104561 7-mer-m8 9 5pUTR, ncRNA TRIM40 Medium_conserved miR-539/539-5p chr6:30104179 7-mer-A1 9 ncRNA TRIM40 Medium_conserved miR-544/544ab/544-3p chr6:30104602 7-mer-m8 16 5pUTR, ncRNA TRIM40 Medium_conserved miR-544/544ab/544-3p chr6:30104831 7-mer-m8 9 CDS, ncRNA TRIM40 Medium_conserved miR-544/544ab/544-3p chr6:30113819 7-mer-m8 11 CDS TRIM40 Medium_conserved miR-873 chr6:30115998 7-mer-m8 4 3pUTR TRIM40 Medium_conserved miR-874 chr6:30104744 7-mer-A1 2 5pUTR, ncRNA TRIM40 Medium_conserved miR-874 chr6:30114915 7-mer-m8 24 CDS TRIM40 Medium_conserved miR-136 chr6:30104248 7-mer-A1 7 ncRNA TRIM40 Medium_conserved miR-149 chr6:30103931 8-mer 9 5pUTR, ncRNA TRIM40 Medium_conserved miR-149 chr6:30114813 7-mer-m8 27 CDS TRIM40 Medium_conserved miR-185/882/3473/4306/4644 chr6:30103917 8-mer 22 5pUTR, ncRNA TRIM40 Medium_conserved miR-185/882/3473/4306/4644 chr6:30115645 7-mer-m8 16 3pUTR TRIM40 Medium_conserved miR-186 chr6:30104186 7-mer-m8 7 ncRNA TRIM40 Medium_conserved miR-197 chr6:30104104 7-mer-m8 7 ncRNA TRIM40 Medium_conserved miR-224 chr6:30115311 8-mer 40 CDS TRIM40 Medium_conserved miR-224 chr6:30116151 7-mer-m8 24 3pUTR TRIM40 Medium_conserved miR-28-5p/708/1407/1653/3139 chr6:30115709 7-mer-m8 11 3pUTR TRIM40 Medium_conserved miR-300/381/539-3p chr6:30116217 7-mer-A1 11 3pUTR TRIM40 Medium_conserved miR-326/330/330-5p chr6:30103933 7-mer-A1 11 5pUTR, ncRNA TRIM40 Medium_conserved miR-339b/339-5p/3586-5p chr6:30104801 7-mer-m8 9 5pUTR, ncRNA TRIM40 Medium_conserved miR-370 chr6:30103957 7-mer-A1 24 5pUTR, ncRNA TRIM40 Medium_conserved miR-370 chr6:30113795 7-mer-A1 22 CDS TRIM40 Medium_conserved miR-370 chr6:30113844 8-mer 4 CDS TRIM40 Medium_conserved miR-376c/741-5p chr6:30104624 7-mer-m8 9 5pUTR, ncRNA TRIM40 Medium_conserved miR-376c/741-5p chr6:30105084 7-mer-m8 7 CDS TRIM40 Medium_conserved miR-378/422a/378bcdefhi chr6:30116398 7-mer-m8 11 3pUTR TRIM40 Medium_conserved miR-379/1193-5p/3529 chr6:30115681 7-mer-m8 16 3pUTR TRIM40 Medium_conserved miR-421 chr6:30104739 7-mer-m8 7 5pUTR, ncRNA TRIM40 Medium_conserved miR-125a-3p/1554 chr6:30115749 8-mer 13 3pUTR TRIM40 Medium_conserved miR-125a-3p/1554 chr6:30116027 7-mer-m8 13 3pUTR TRIM40 Medium_conserved miR-433 chr6:30105125 8-mer 9 CDS TRIM40 Medium_conserved miR-485-5p/1698/1703/1962 chr6:30104957 7-mer-m8 11 CDS, ncRNA TRIM40 Medium_conserved miR-485-5p/1698/1703/1962 chr6:30115635 7-mer-m8 24 3pUTR TRIM40 Medium_conserved miR-485-5p/1698/1703/1962 chr6:30115787 7-mer-m8 18 3pUTR TRIM40 Medium_conserved miR-485-5p/1698/1703/1962 chr6:30116073 7-mer-m8 4 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRIM40 RAID00142399 hsa-miR-128-3p miRNA MIMAT0000424 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00142444 hsa-miR-520a-3p miRNA MIMAT0002834 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00258585 hsa-miR-520c-3p miRNA MIMAT0002846 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00298456 hsa-miR-5701 miRNA MIMAT0022494 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00363900 hsa-miR-335-5p miRNA MIMAT0000765 TRIM40 mRNA 135644 Microarray 0.5483 TRIM40 RAID00372555 hsa-miR-329-3p miRNA MIMAT0001629 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00419841 hsa-miR-8060 miRNA MIMAT0030987 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00522011 hsa-miR-302e miRNA MIMAT0005931 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00535749 hsa-miR-101-3p miRNA MIMAT0000099 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00712091 hsa-miR-185-5p miRNA MIMAT0000455 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00866419 hsa-miR-302a-3p miRNA MIMAT0000684 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00879707 hsa-miR-224-5p miRNA MIMAT0000281 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00926975 hsa-miR-6766-5p miRNA MIMAT0027432 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00929466 hsa-miR-520d-3p miRNA MIMAT0002856 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID00972489 hsa-miR-873-5p miRNA MIMAT0004953 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01065603 hsa-miR-302c-3p miRNA MIMAT0000717 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01333490 hsa-miR-4293 miRNA MIMAT0016848 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01472909 hsa-miR-96-5p miRNA MIMAT0000095 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01577057 hsa-miR-376b-3p miRNA MIMAT0002172 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01660720 hsa-miR-874-3p miRNA MIMAT0004911 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01664162 hsa-miR-302b-3p miRNA MIMAT0000715 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01750329 hsa-miR-1254 miRNA MIMAT0005905 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01782527 hsa-miR-296-3p miRNA MIMAT0004679 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01801315 hsa-miR-520e miRNA MIMAT0002825 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01888184 hsa-miR-24-3p miRNA MIMAT0000080 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01920005 hsa-miR-485-5p miRNA MIMAT0002175 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID01928995 hsa-miR-383-5p miRNA MIMAT0000738 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02049647 hsa-miR-4742-5p miRNA MIMAT0019872 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02131003 hsa-miR-422a miRNA MIMAT0001339 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02146945 hsa-miR-211-5p miRNA MIMAT0000268 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02203465 hsa-miR-1271-5p miRNA MIMAT0005796 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02351274 hsa-let-7b-5p miRNA MIMAT0000063 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02432484 hsa-miR-6756-5p miRNA MIMAT0027412 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02505451 hsa-miR-5095 miRNA MIMAT0020600 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02552205 hsa-miR-3652 miRNA MIMAT0018072 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02671313 hsa-miR-378a-3p miRNA MIMAT0000732 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02683123 hsa-miR-125a-3p miRNA MIMAT0004602 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID02829037 hsa-miR-302d-3p miRNA MIMAT0000718 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03205820 hsa-miR-373-3p miRNA MIMAT0000726 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03292043 hsa-miR-4430 miRNA MIMAT0018945 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03363042 hsa-miR-520b miRNA MIMAT0002843 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03384830 hsa-miR-4283 miRNA MIMAT0016914 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03423792 hsa-miR-376a-3p miRNA MIMAT0000729 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03436485 hsa-miR-6842-3p miRNA MIMAT0027587 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03508290 hsa-miR-7151-3p miRNA MIMAT0028213 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03656961 hsa-miR-25-3p miRNA MIMAT0000081 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03778603 hsa-miR-372-3p miRNA MIMAT0000724 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03844086 hsa-miR-362-3p miRNA MIMAT0004683 TRIM40 mRNA 135644 Prediction 0.1828 TRIM40 RAID03935721 hsa-miR-204-5p miRNA MIMAT0000265 TRIM40 mRNA 135644 Prediction 0.1828