DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome RFPL4B 3'UTR 751f16ebad BA090377 NM_001013734 chr6:112778603-112779191:+ RFPL4B 5'UTR 751f16ebad CA141833 NM_001013734 chr6:112775225-112777810:+

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004490 hsa-miR-19a* 442247 RFPL4B acaucACGU-UGAUA---CGUUUUGa ||:| ||| | ||||||| gauuuUGUAGACUUUGUAGCAAAACa 2 18 124 149 [hg19:6:112671826-112671851:+] 0.4443 147 7 -13.55 -1.1074 MIMAT0004491 hsa-miR-19b-1* 442247 RFPL4B cgaccuACGUUUGGA----CGUUUUGa ||:|:||:| ||||||| agauuuUGUAGACUUUGUAGCAAAACa 2 18 123 149 [hg19:6:112671825-112671851:+] 0.4443 152 7 -14.17 -1.1074 MIMAT0004492 hsa-miR-19b-2* 442247 RFPL4B acuuuACGUUUGGA----CGUUUUGa ||:|:||:| ||||||| gauuuUGUAGACUUUGUAGCAAAACa 2 18 124 149 [hg19:6:112671826-112671851:+] 0.4443 152 7 -15.06 -1.1074 MIMAT0004495 hsa-miR-22* 442247 RFPL4B auUUCGAACGGUGA---CUUCUUGa || | || :|:| ||||||| acAAAC-UGAUAUUGGGGAAGAACu 2 21 503 526 [hg19:6:112672205-112672228:+] 0.4927 145 7 -13.90 -0.5352 MIMAT0004549 hsa-miR-148a* 442247 RFPL4B ucagcCUCACAGAGUCUUGAAa || | | ||||||| uucuuGAAAGACAAAGAACUUu 2 18 571 592 [hg19:6:112672273-112672294:+] 0.4617 145 7 -8.95 -0.6364 MIMAT0004553 hsa-miR-7-1* 442247 RFPL4B auaccGUCU-GACACUAAACAac ::|| :| | |||||| gcuuuUGGAUUUUUUAUUUGUag 3 18 737 759 [hg19:6:112672439-112672461:+] 0.5188 128 0 -6.19 -0.1514 MIMAT0004555 hsa-miR-10a* 442247 RFPL4B auaaggggaucuaugCUUAAAc |||||| gauuuuuuauuuguaGAAUUUa 2 8 744 765 [hg19:6:112672446-112672467:+] 0.5188 120 6 -6.12 -0.1735 MIMAT0004561 hsa-miR-187* 442247 RFPL4B cgggcccAGGACAC----AACAUCGg |::|||| ||||||| ggguaaaUUUUGUGGAAUUUGUAGCu 2 16 165 190 [hg19:6:112671867-112671892:+] 0.4423 146 7 -18.91 -0.6073 MIMAT0004561 hsa-miR-187* 442247 RFPL4B cgggcCCAGGACA-C---AACAUCGg | |::||| | ||||||| aaguaGAUUUUGUAGACUUUGUAGCa 2 18 119 144 [hg19:6:112671821-112671846:+] 0.4443 143 7 -11.73 -1.0348 MIMAT0004561 hsa-miR-187* 442247 RFPL4B cgGGCCCAGGACA-CAACAUCgg ::|| |::| | |||||| uuUUGGAUUUUUUAUUUGUAGaa 3 21 739 761 [hg19:6:112672441-112672463:+] 0.5188 131 0 -11.29 -0.3165 MIMAT0004566 hsa-miR-218-2* 442247 RFPL4B gcgccacgaacugucUUGGUAc |||||| auaagaauucuuaucAACCAUg 2 8 676 697 [hg19:6:112672378-112672399:+] 0.5266 120 6 -11.36 -0.1277 MIMAT0004596 hsa-miR-138-2* 442247 RFPL4B uugggaccacagcacUUUAUCg |||||| cuuauaguaaauaacAAAUAGa 2 8 315 336 [hg19:6:112672017-112672038:+] 0.4888 120 6 -3.67 -0.1531 MIMAT0004597 hsa-miR-140-3p 442247 RFPL4B ggcaccaAGAUGG--GACACCAu || | | ||||||| aucucagUCAAACAGCUGUGGUa 2 15 267 289 [hg19:6:112671969-112671991:+] 0.5311 141 7 -14.47 -0.8835 MIMAT0004598 hsa-miR-141* 442247 RFPL4B agGUUGUGACAUGACCUUCUac ||:||: | |||||| guCAGCAUGAUUGAGGAAGAga 3 21 61 82 [hg19:6:112671763-112671784:+] 0.5234 132 0 -17.41 -0.1158 MIMAT0004604 hsa-miR-127-5p 442247 RFPL4B uagucUCGGGAGACUCGAAGUc ||: || | ||||||| uauuaAGUACUGUAAGCUUCAg 2 18 216 237 [hg19:6:112671918-112671939:+] 0.5063 157 7 -17.65 -0.6399 MIMAT0004607 hsa-miR-138-1* 442247 RFPL4B ccgGGACCA---CAACACUUCAUCg |:|||| || | |||||| agaCUUGGUAAAUUUUUAAAGUAGa 2 20 101 125 [hg19:6:112671803-112671827:+] 0.4889 126 6 -13.83 -0.1825 MIMAT0004608 hsa-miR-146a* 442247 RFPL4B gacuUCUUGACUUAAAGUCUCc || |: |||||||||| auacAGCAUGAAAUUUCAGAGa 2 19 480 501 [hg19:6:112672182-112672203:+] 0.4965 162 7 -14.49 -1.0764 MIMAT0004680 hsa-miR-130b* 442247 RFPL4B caucACGUUGUCC-CUUUCUCa | ::| ||| ||||||| gcuuUCUGAGAGGUGAAAGAGa 2 18 22 43 [hg19:6:112671724-112671745:+] 0.4397 152 7 -14.91 -0.6936 MIMAT0000716 hsa-miR-302c* 442247 RFPL4B gucguccAUGG-GGGUACAAUUu ||:| ||||||||| gaauucuUAUCAACCAUGUUAAc 2 16 680 702 [hg19:6:112672382-112672404:+] 0.5266 154 7 -12.60 -0.6268 MIMAT0004688 hsa-miR-374a* 442247 RFPL4B uuaauguUAUGUUA--GACUAUUc :|::||| ||||||| cuguuuuGUGUAAUUCCUGAUAAu 2 16 408 431 [hg19:6:112672110-112672133:+] 0.4888 150 7 -8.62 -0.4982 MIMAT0000734 hsa-miR-380* 442247 RFPL4B cgcguacaagauaccAGUUGGu |||||| uuauaagaauucuuaUCAACCa 2 8 674 695 [hg19:6:112672376-112672397:+] 0.5266 120 6 -12.13 -0.2012 MIMAT0004701 hsa-miR-338-5p 442247 RFPL4B guGAGUCGUGGUCCU-AUAACAa |||| :| : ||| |||||| auCUCAAUAAUUGGACUAUUGUg 2 21 649 671 [hg19:6:112672351-112672373:+] 0.5250 132 6 -14.36 -1.0075 MIMAT0001636 hsa-miR-452* 442247 RFPL4B gugAAUGAAGAAAC---GUC-UACUc |||:||: ||| ||| |||| gagUUAUUUUGUUGAUACAGCAUGAa 2 20 466 491 [hg19:6:112672168-112672193:+] 0.4965 126 0 -10.06 -0.9078 MIMAT0002808 hsa-miR-511 442247 RFPL4B acugacgucucGUUUUCUGUg ::||||||| auaaguuuucuUGAAAGACAa 2 11 564 584 [hg19:6:112672266-112672286:+] 0.4617 142 7 -9.01 -0.7408 MIMAT0002826 hsa-miR-515-5p 442247 RFPL4B gucuuucacGAAAGAAAACCUCUu :|||: |||| ||| cuuuuggauUUUUUAUUUGUAGAa 2 16 738 761 [hg19:6:112672440-112672463:+] 0.5188 127 0 -8.16 -0.1014 MIMAT0002849 hsa-miR-524-5p 442247 RFPL4B cucUUUCA-CGAAGG-----GAAACAUc ||||| | ||:: ||||||| uuuAAAGUAGAUUUUGUAGACUUUGUAg 2 20 115 142 [hg19:6:112671817-112671844:+] 0.4498 145 7 -13.71 -0.5915 MIMAT0002849 hsa-miR-524-5p 442247 RFPL4B cucuuucacGAAGGGAAACAUc :||:: |||||| cuuuuggauUUUUUAUUUGUAg 2 14 738 759 [hg19:6:112672440-112672461:+] 0.5188 121 6 -9.89 -0.1851 MIMAT0002855 hsa-miR-520d-5p 442247 RFPL4B cuuucccgaaggGAAACAUc ||||||| agauuuuguagaCUUUGUAg 2 9 123 142 [hg19:6:112671825-112671844:+] 0.4443 140 7 -11.33 -0.5874 MIMAT0002855 hsa-miR-520d-5p 442247 RFPL4B cuuucccGAAGGGAAACAUc :||:: |||||| uuuggauUUUUUAUUUGUAg 2 14 740 759 [hg19:6:112672442-112672461:+] 0.5188 121 6 -13.10 -0.1833 MIMAT0004777 hsa-miR-513a-3p 442247 RFPL4B ggAAGAGUCUUUC-CACUUUAAAu | :| | | || |||||||| uuUGUUGAUACAGCAUGAAAUUUc 2 22 473 496 [hg19:6:112672175-112672198:+] 0.4965 152 7 -9.47 -0.5022 MIMAT0004777 hsa-miR-513a-3p 442247 RFPL4B ggAAGAGUCUUUCCACUUUAAAu ||||:: ||| |||||| uuUUCUUGCAAA---UAAAUUUa 2 22 766 785 [hg19:6:112672468-112672487:+] 0.5114 125 6 -7.17 -0.1292 MIMAT0002879 hsa-miR-507 442247 RFPL4B aagugAGGUUUUCCACGUUUu | | | | ||||||| uaaugUGCUAUA-GUGCAAAg 2 17 83 102 [hg19:6:112671785-112671804:+] 0.5234 142 7 -10.61 -0.7444 MIMAT0003221 hsa-miR-557 442247 RFPL4B ucUGUUCCGGGUGGGCACGUUUg |:|| |: | : ||||||| agAUAAUGUGCUAUAGUGCAAAg 2 22 80 102 [hg19:6:112671782-112671804:+] 0.5234 153 7 -16.87 -0.7766 MIMAT0003227 hsa-miR-563 442247 RFPL4B cccuuugcauacAGUUGGa |||||| uaagaauucuuaUCAACCa 2 8 677 695 [hg19:6:112672379-112672397:+] 0.5266 120 6 -7.51 -0.2050 MIMAT0004794 hsa-miR-551b* 442247 RFPL4B ccagagugggugcgaACUAAAg |||||| auaauuggacuauugUGAUUUa 2 8 655 676 [hg19:6:112672357-112672378:+] 0.5250 120 6 -6.99 -0.1556 MIMAT0003235 hsa-miR-570 442247 RFPL4B cguuuccaUUAACGACAAAAGc || :||||||| uauucaucAAAAAUUGUUUUCa 2 15 710 731 [hg19:6:112672412-112672433:+] 0.5209 142 7 -7.17 -1.2289 MIMAT0003244 hsa-miR-579 442247 RFPL4B uuAGCGCCAAAUAUGGUUUA-CUu |: : || ||| ||||| || ucUUAUAGUAAAUAACAAAUAGAg 2 22 314 337 [hg19:6:112672016-112672039:+] 0.4888 121 0 -6.00 -0.9660 MIMAT0004797 hsa-miR-582-3p 442247 RFPL4B ccaagUCAACA--AGUUGGU-CAAu | || | ||||||| ||| auaagAAUUCUUAUCAACCAUGUUa 2 18 676 700 [hg19:6:112672378-112672402:+] 0.5266 120 0 -13.89 -1.1694 MIMAT0003251 hsa-miR-548a-3p 442247 RFPL4B cguuuuCAUUAACGGUCAAAAc |||| :||||||| aguacuGUAAGCUUCAGUUUUc 2 17 221 242 [hg19:6:112671923-112671944:+] 0.5063 152 7 -11.57 -0.6093 MIMAT0003252 hsa-miR-586 442247 RFPL4B ccUGGAUUUUUAUGUUACGUAu | || :| | ||||||| agAACUUUGACCAAAAUGCAUu 2 21 585 606 [hg19:6:112672287-112672308:+] 0.4779 148 7 -10.22 -0.8176 MIMAT0004802 hsa-miR-593 442247 RFPL4B ucuuuggggUCGUCUCUGu | :|||||| gcugugguaAUUAGAGACa 2 11 281 299 [hg19:6:112671983-112672001:+] 0.5311 126 6 -11.85 -0.1251 MIMAT0003268 hsa-miR-600 442247 RFPL4B cuCGUUCCGAGAA--CA-GACAUUCa | :| |:| || || ||||||| uaGGGAUGUUAUUAAGUACUGUAAGc 2 22 207 232 [hg19:6:112671909-112671934:+] 0.5063 151 7 -13.44 -0.7771 MIMAT0003273 hsa-miR-605 442247 RFPL4B uccucUUCC-GUGGUACCCUAAAu |||| ::|: | |||||| uuuucAAGGUUGCUUUUGGAUUUu 2 19 726 749 [hg19:6:112672428-112672451:+] 0.5209 129 6 -10.00 -0.1207 MIMAT0003275 hsa-miR-607 442247 RFPL4B caauaucuagaccuAAACUUg |||||| ucauuuuuauuuucUUUGAAa 2 8 534 554 [hg19:6:112672236-112672256:+] 0.4889 120 6 -3.83 -0.1247 MIMAT0003285 hsa-miR-548c-3p 442247 RFPL4B cgUUUUCAU-UAACUCUAAAAAc |||| | || :||||||| gcAAAACAAUUUUCGGAUUUUUg 2 21 142 164 [hg19:6:112671844-112671866:+] 0.4060 155 7 -12.15 -0.1555 MIMAT0003285 hsa-miR-548c-3p 442247 RFPL4B cguUUUCAUU--AACUCUAAAAAc ||:|| : || :||||||| uucAAGGUUGCUUUUGGAUUUUUu 2 20 728 751 [hg19:6:112672430-112672453:+] 0.5209 154 7 -9.23 -0.8601 MIMAT0003285 hsa-miR-548c-3p 442247 RFPL4B cgUUUUCAUU--AACUCUAAAAAc |:|| ||| || |||||| gaAGAACUAAGUUUUUCAUUUUUa 2 21 519 542 [hg19:6:112672221-112672244:+] 0.4889 127 6 -5.24 -0.2417 MIMAT0004808 hsa-miR-625* 442247 RFPL4B acUCCCCCUUUCAAGAUAUCAg || | || || ||||||| gaAGAGAUAAUGUGCUAUAGUg 2 21 76 97 [hg19:6:112671778-112671799:+] 0.5234 160 7 -10.84 -0.3612 MIMAT0004809 hsa-miR-628-5p 442247 RFPL4B ggagaucaUUUAUACAGUCGUa |:| | ||||||| uuggccugAGAAAGGUCAGCAu 2 15 47 68 [hg19:6:112671749-112671770:+] 0.5234 150 7 -19.02 -0.2924 MIMAT0003312 hsa-miR-642 442247 RFPL4B guUCUGUGUAAACCUCUCC-CUg ||| :| || |||||| || cuAGAAGCUUUCUGAGAGGUGAa 2 21 16 38 [hg19:6:112671718-112671740:+] 0.4397 128 0 -15.20 -0.4013 MIMAT0005791 hsa-miR-1264 442247 RFPL4B uugUCCACGAGUUUA---UUCUGAAc | ||||| |:| ||||||| auaAUGUGCUAUAGUGCAAAGACUUg 2 21 82 107 [hg19:6:112671784-112671809:+] 0.4920 155 7 -18.12 -0.6314 MIMAT0003884 hsa-miR-454* 442247 RFPL4B cgUCUCUGUUAUAACUAU--CCCa |||||||| | ||||| ||| agAGAGACAA-ACUGAUAUUGGGg 2 21 497 519 [hg19:6:112672199-112672221:+] 0.4927 126 0 -19.66 -0.8493 MIMAT0005799 hsa-miR-1283 442247 RFPL4B ucuuucgcGAAAGGAAACAUCu :|||: ||||||| uuuuggauUUUUUAUUUGUAGa 2 15 739 760 [hg19:6:112672441-112672462:+] 0.5188 154 7 -11.91 -1.2909 MIMAT0005799 hsa-miR-1283 442247 RFPL4B ucUUUCG-CGAAAG-----GAAACAUCu ||||: | |||: |||||||| uuAAAGUAGAUUUUGUAGACUUUGUAGc 2 21 116 143 [hg19:6:112671818-112671845:+] 0.4498 150 7 -13.37 -0.4280 MIMAT0005799 hsa-miR-1283 442247 RFPL4B ucuuucgcgaaaggAAACAUCu ||||||| uaaauuuuguggaaUUUGUAGc 2 9 168 189 [hg19:6:112671870-112671891:+] 0.4423 140 7 -9.10 -0.5113 MIMAT0004909 hsa-miR-450b-5p 442247 RFPL4B auaaguccuuguAUAACGUUUu | ||||||| uagaauuuauuuUCUUGCAAAu 2 11 757 778 [hg19:6:112672459-112672480:+] 0.5188 142 7 -6.05 -0.7267 MIMAT0004918 hsa-miR-892b 442247 RFPL4B agaugggucuuuccUCGGUCAc ||||||| aagaaaaauucaacAGCCAGUg 2 9 443 464 [hg19:6:112672145-112672166:+] 0.4726 140 7 -16.39 -0.4019 MIMAT0004921 hsa-miR-889 442247 RFPL4B uguuaccaacaggCUAUAAUu ||||||| uguaaguaagcuaGAUAUUAg 2 9 349 369 [hg19:6:112672051-112672071:+] 0.4888 140 7 -8.18 -0.6530 MIMAT0004978 hsa-miR-935 442247 RFPL4B cgCCAUCGCCUUCG--CCAUUGACc || | : | ||| |||||||| guGGAAUUUGUAGCUAGGUAACUGg 2 22 176 200 [hg19:6:112671878-112671902:+] 0.4786 156 7 -23.06 -0.1457 MIMAT0004987 hsa-miR-944 442247 RFPL4B gaguaGGCUACAUGUUAUUAAa || || | |||||||| auuuaCCCAUCU-CAAUAAUUg 2 18 641 661 [hg19:6:112672343-112672363:+] 0.5178 155 7 -8.52 -0.3086 MIMAT0005591 hsa-miR-1236 442247 RFPL4B gaCCUCUC-UGUU--CCCCUUCUCc || || |::| | ||||||| aaGGUCAGCAUGAUUGAGGAAGAGa 2 21 58 82 [hg19:6:112671760-112671784:+] 0.5234 146 7 -14.43 -1.1545 MIMAT0005874 hsa-miR-548e 442247 RFPL4B acguuuuCA-UCAGAGUCAAAAa || || :|||||||| aaguacuGUAAGCUUCAGUUUUc 2 16 220 242 [hg19:6:112671922-112671944:+] 0.5063 154 7 -12.93 -0.6167 MIMAT0005894 hsa-miR-1243 442247 RFPL4B gugaggaUAUUAAC-UAG-GUCAa ||||||| ||| |||| gaugcggAUAAUUGUAUCUCAGUc 2 16 252 275 [hg19:6:112671954-112671977:+] 0.5325 130 0 -14.20 -0.6333 MIMAT0005895 hsa-miR-548f 442247 RFPL4B uuuuCAUU-AAUGUCAAAAa |||| | ||||||| uacuGUAAGCUUCAGUUUUc 2 16 223 242 [hg19:6:112671925-112671944:+] 0.5063 150 7 -8.96 -0.6130 MIMAT0005903 hsa-miR-1251 442247 RFPL4B ucgcggaaaccgUCGAUCUca ||||||| agauuguaaguaAGCUAGAua 3 10 345 365 [hg19:6:112672047-112672067:+] 0.4888 125 0 -9.20 -0.1014 MIMAT0005916 hsa-miR-548n 442247 RFPL4B uguUUUAGGUGUUAAU-GAAAAc ::|| |||| || ||||| uguGGAUAGACAA-UAUCUUUUu 2 20 374 395 [hg19:6:112672076-112672097:+] 0.4888 121 0 -7.64 -0.7673 MIMAT0005921 hsa-miR-1267 442247 RFPL4B acCCCUAAUGUGAAGUUGUCc || | | | |||||||| gaGGAAGAAAAAUUCAACAGc 2 20 439 459 [hg19:6:112672141-112672161:+] 0.4726 155 7 -13.16 -0.5603 MIMAT0005925 hsa-miR-1272 442247 RFPL4B aaagucuuaaacgacgguAGUAGUag |||||| auguuaacuaacacauauUCAUCAaa 3 9 695 720 [hg19:6:112672397-112672422:+] 0.5209 120 0 -11.28 -0.2336 MIMAT0005956 hsa-miR-1324 442247 RFPL4B cuuucaCGUA-UCUUAAGA-CAGACc || | || |||| ||||| cuguaaGCUUCAGUUUUCUAGUCUGu 2 19 225 250 [hg19:6:112671927-112671952:+] 0.5063 121 0 -13.76 -0.4441 MIMAT0006765 hsa-miR-1825 442247 RFPL4B ccucuccuccCGUGACCu |||:||| aauuuauaaaGCAUUGG- 2 9 780 796 [hg19:6:112672482-112672498:+] 0.5114 124 0 -9.67 -0.1311 MIMAT0009447 hsa-miR-1972 442247 RFPL4B acucggugacacGGACCGGACu ::||||||| gugaaagagaauUUUGGCCUGa 2 11 34 55 [hg19:6:112671736-112671757:+] 0.4815 142 7 -20.02 -0.8633 MIMAT0011159 hsa-miR-2115* 442247 RFPL4B gaUCG--GAGGUAC-UUAA-GACUAc ||| :|:::|| |||| ||||| caAGCUGUUUUGUGUAAUUCCUGAUa 2 21 404 429 [hg19:6:112672106-112672131:+] 0.4888 126 0 -12.32 -0.9508 MIMAT0011775 hsa-miR-2276 442247 RFPL4B ggagcggagacuguGAACGUcu |||||| guagaauuuauuuuCUUGCAaa 3 9 756 777 [hg19:6:112672458-112672479:+] 0.5188 120 0 -8.87 -0.2021 MIMAT0014998 hsa-miR-3133 442247 RFPL4B uaaccCAAAAUUCUCAA-GAAAu ||||| | :||| |||| aaauuGUUUUCAAGGUUGCUUUu 2 18 720 742 [hg19:6:112672422-112672444:+] 0.5209 129 0 -8.72 -0.6146 MIMAT0014998 hsa-miR-3133 442247 RFPL4B uaacccaaaauucucAAGAAAu |||||| uuuuucauuuuuauuUUCUUUg 2 8 530 551 [hg19:6:112672232-112672253:+] 0.4889 120 6 -5.01 -0.1002 MIMAT0015002 hsa-miR-466 442247 RFPL4B uacacacaacgcacauACACAUa |||||| uuauuucaagcuguuuUGUGUAa 2 8 398 420 [hg19:6:112672100-112672122:+] 0.4888 120 6 -10.38 -0.1031 MIMAT0015003 hsa-miR-3136 442247 RFPL4B uuacugggauggAUA-AGUCAGUc ||| ||||||| ugcggauaauugUAUCUCAGUCAa 2 12 254 277 [hg19:6:112671956-112671979:+] 0.5325 146 7 -12.89 -0.8652 MIMAT0015020 hsa-miR-548v 442247 RFPL4B accacguuUUCAUUGACA-UCGa |||| ||||| ||| auguuauuAAGU-ACUGUAAGCu 2 15 212 233 [hg19:6:112671914-112671935:+] 0.5063 120 0 -14.73 -0.5793 MIMAT0015025 hsa-miR-3152 442247 RFPL4B aaUAACGGGGAUAA--GAUUGUGu || || |:|| ||||||| uuAUCAACCAUGUUAACUAACACa 2 21 686 709 [hg19:6:112672388-112672411:+] 0.5266 151 7 -14.74 -1.2869 MIMAT0015027 hsa-miR-3074 442247 RFPL4B gccacggaugacUCGACUAUAg | ||||||| uucagagagacaAACUGAUAUu 2 11 494 515 [hg19:6:112672196-112672217:+] 0.4927 142 7 -9.57 -0.6432 MIMAT0015035 hsa-miR-3161 442247 RFPL4B uagacccggagacAAGAAUAGUc ||||||||| ugauuuauaagaaUUCUUAUCAa 2 11 670 692 [hg19:6:112672372-112672394:+] 0.5323 150 7 -8.95 -1.1743 MIMAT0015037 hsa-miR-3163 442247 RFPL4B caGAAUGACGGGAGU-AAAAUAu || | | :::||| |||||| aaCUAAGU-UUUUCAUUUUUAUu 2 21 523 544 [hg19:6:112672225-112672246:+] 0.4889 122 6 -7.98 -0.5329 MIMAT0015066 hsa-miR-3065-5p 442247 RFPL4B agGUCGUAGUCACUAAAACAACu |||::| ||| ||||||||| gcCAGUGUGAGUUAUUUUGUUGa 2 22 458 480 [hg19:6:112672160-112672182:+] 0.4965 181 7 -25.97 -0.9720 MIMAT0015081 hsa-miR-548x 442247 RFPL4B acUUUCAUUAACGUCAAAAAu :||| || | ||||||| ggGAAG-AACU-AAGUUUUUc 2 20 517 535 [hg19:6:112672219-112672237:+] 0.4889 147 7 -8.86 -0.7135 MIMAT0015089 hsa-miR-3202 442247 RFPL4B uaaUUUCGAGAAGAGGGAAGGu |||| || ||||||| --gAAAG-UC--AGCCCUUCCu 2 20 1 17 [hg19:6:112671703-112671719:+] 0.4752 142 7 -16.54 -0.6157 MIMAT0016905 hsa-miR-4275 442247 RFPL4B uuUCUUCACC-AUUAACc ||| | || |||||| guAGAUGCGGAUAAUUGu 2 16 249 266 [hg19:6:112671951-112671968:+] 0.5325 123 6 -8.50 -0.3425 MIMAT0016912 hsa-miR-4282 442247 RFPL4B agGACCUACGUUUAAAAu :|||: |:||||||| uuUUGGG-GUAAAUUUUg 2 17 160 176 [hg19:6:112671862-112671878:+] 0.4423 154 7 -14.61 -0.2292 MIMAT0016912 hsa-miR-4282 442247 RFPL4B aggaccuaCGUUUAAAAu |:||||||| aagacuugGUAAAUUUUu 2 11 100 117 [hg19:6:112671802-112671819:+] 0.4920 146 7 -10.63 -0.8225 MIMAT0000076 hsa-miR-21 442247 RFPL4B agUUGUAGUCAGAC---UAUUCGAu ||: |:|| :|| :|||||| gaAAUCUUAGAUUGUAAGUAAGCUa 2 21 337 361 [hg19:6:112672039-112672063:+] 0.4888 139 6 -12.84 -0.1372 MIMAT0000078 hsa-miR-23a 442247 RFPL4B ccUUUA-GGGACCGUUA-CACUa |||| | :|| :||| |||| caAAAUGCAUUGUUAAUGGUGAu 2 20 596 618 [hg19:6:112672298-112672320:+] 0.4941 126 0 -11.39 -0.8000 MIMAT0000089 hsa-miR-31 442247 RFPL4B ucgaUACGGUCGUAGAACGga || ::| : |||||| uagaAU-UUAUUUUCUUGCaa 3 18 757 776 [hg19:6:112672459-112672478:+] 0.5188 123 0 -8.07 -0.2350 MIMAT0000099 hsa-miR-101 442247 RFPL4B aaguCAAUAGUGUCAUGACAu |||||:| |||||||| ggauGUUAUUA-AGUACUGUa 2 18 210 229 [hg19:6:112671912-112671931:+] 0.5063 167 7 -18.50 -1.0145 MIMAT0000264 hsa-miR-203 442247 RFPL4B gaucaccagGAUU-UGUA-AAGUg |||| |||| |||| ccauguuaaCUAACACAUAUUCAu 2 14 693 716 [hg19:6:112672395-112672418:+] 0.5209 120 0 -9.17 -0.8380 MIMAT0000418 hsa-miR-23b 442247 RFPL4B ccaUUA-GGGACCGUUA-CACUa ||| | :|| :||| |||| caaAAUGCAUUGUUAAUGGUGAu 2 19 596 618 [hg19:6:112672298-112672320:+] 0.4941 121 0 -10.66 -0.8000 MIMAT0000427 hsa-miR-133a 442247 RFPL4B gucgaccaacuucccCUGGUUu |||||| aagacaaagaacuuuGACCAAa 2 8 578 599 [hg19:6:112672280-112672301:+] 0.4779 120 6 -9.67 -0.1206 MIMAT0000435 hsa-miR-143 442247 RFPL4B cucgaugucacgaaGUAGAGu |||||| aagugucauuuaccCAUCUCa 2 8 634 654 [hg19:6:112672336-112672356:+] 0.5178 120 6 -12.17 -0.1247 MIMAT0000456 hsa-miR-186 442247 RFPL4B ucggguuuuccucuuAAGAAAc |||||| uuuuucauuuuuauuUUCUUUg 2 8 530 551 [hg19:6:112672232-112672253:+] 0.4889 120 6 -8.43 -0.1075 MIMAT0000646 hsa-miR-155 442247 RFPL4B uggggauAGUGCUAAUCGUAAUu |:|: | ||||||: aauaaauUUAUAA--AGCAUUGg 2 17 776 796 [hg19:6:112672478-112672498:+] 0.5114 125 0 -8.08 -0.3554 MIMAT0000687 hsa-miR-299-3p 442247 RFPL4B uucgccaaaugguagGGUGUAu |||||| uucuuugaaacacagCCACAUa 2 8 545 566 [hg19:6:112672247-112672268:+] 0.4753 120 6 -13.74 -0.1125 MIMAT0000753 hsa-miR-342-3p 442247 RFPL4B ugcccacgcuaaaGACACACUCu | ||||||| aaaauucaacagcCAGUGUGAGu 2 11 447 469 [hg19:6:112672149-112672171:+] 0.4726 142 7 -12.43 -0.6511 MIMAT0000770 hsa-miR-133b 442247 RFPL4B aucgaccaacuucccCUGGUUu |||||| aagacaaagaacuuuGACCAAa 2 8 578 599 [hg19:6:112672280-112672301:+] 0.4779 120 6 -9.67 -0.1206 MIMAT0003393 hsa-miR-425 442247 RFPL4B aguUGCCCUCACUAGCACAGUAa |:|||| | ||||||| cuuAUGGGA---A--GUGUCAUu 2 21 626 643 [hg19:6:112672328-112672345:+] 0.5178 141 7 -18.27 -0.8358 MIMAT0003258 hsa-miR-590-5p 442247 RFPL4B gacgugaaAAUACUUAUUCGAg ||:| |:|||||| aucuuagaUUGUAAGUAAGCUa 2 15 340 361 [hg19:6:112672042-112672063:+] 0.4888 142 6 -10.64 -0.1319 MIMAT0003328 hsa-miR-653 442247 RFPL4B gucaucUCUAACAAAGUUGUg ||| ||||||| ggaggaAGAAAAAUUCAACAg 2 16 438 458 [hg19:6:112672140-112672160:+] 0.4726 143 7 -9.28 -0.4668 MIMAT0004953 hsa-miR-873 442247 RFPL4B uccucugaguguucAAGGACg |||||| gcuguuuuguguaaUUCCUGa 2 8 407 427 [hg19:6:112672109-112672129:+] 0.4888 120 6 -9.51 -0.1135

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G051591 RFPL4B Homo sapiens 442247

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End RFPL4B; RNF211 1 793 100 93.269 + chr6 112671702 112672495 RFPL4B; RNF211 794 796 5.372 93.269 + chr6 112672495 112672498

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile RFPL4B hsa-miR-1264 beg:92 end:108 pic:3' TTGTCCACGAGTTTATTCTGAAC 5'& |||| |||||||| &5' -----GTGCA-----AAGACTTG 3' RFPL4B hsa-miR-127-5p beg:218 end:238 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& || || | |||||||| &5' -----AGTACTGTAAGCTTCAG 3' RFPL4B hsa-miR-302cstar beg:684 end:702 pic:3' GTCGTCCATGGG-GGTACAATTT 5'& ||.| ||||||||| &5' -------TATCAACCATGTTAA- 3' RFPL4B hsa-miR-3202 beg:0 end:17 pic:3' TAATTTCGAGAAGAGGGAAGGT 5'& ||||. ||||||| &5' ---AAAGTCAG---CCCTTCC- 3' RFPL4B hsa-miR-3152 beg:690 end:710 pic:3' AATAACGGGGATAA--GATTGTGT 5'& || |.|| |||||||| &5' -------CCATGTTAACTAACACA 3' RFPL4B ebv-miR-BART11-5p beg:421 end:438 pic:3' GTTGATCGCGTGGTTTG-ACAGACT 5'& | | ||||||| &5' -----------CTGATAATGTCTGA 3' RFPL4B ebv-miR-BART14star beg:151 end:170 pic:3' ACATTTAGCCGTCGCATCCCAT 5'& |||| |.||||| &5' ------TCGGATTTTTGGGGTA 3' RFPL4B ebv-miR-BART19-3p beg:761 end:782 pic:3' TCGTAAGGGTTCGTTTGTTTT 5'& .||| | |||||.||| &5' --TATTTTCTTGCAAATAAA- 3' RFPL4B ebv-miR-BART19-3p beg:568 end:587 pic:3' TCGTAAGGGTTCGTTTGTTTT 5'& |||. | |.|||||. &5' ----TTCTTGAA-AGACAAAG 3' RFPL4B ebv-miR-BART22 beg:120 end:143 pic:3' TGATGATCTGGTA---CTGAAACATT 5'& ||||.. |||||||||. &5' -----TAGATTTTGTAGACTTTGTAG 3' RFPL4B hsa-miR-130bstar beg:26 end:43 pic:3' CATCACGTTGTCC-CTTTCTCA 5'& .| ||| ||||||| &5' -------GAGAGGTGAAAGAG- 3' RFPL4B hsa-miR-22star beg:516 end:527 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& |||||||| &5' --------------GAAGAACT 3' RFPL4B hsa-miR-1236 beg:66 end:82 pic:3' GACCTCTCTGTTCCCCTTCTCC 5'& ||. | ||||||| &5' -------GATT-GAGGAAGAG- 3' RFPL4B hsv1-miR-H6-3p beg:626 end:639 pic:3' CCCTACCTTCCTGCCCTTCAC 5'& |.|||||||| &5' -----------ATGGGAAGTG 3' RFPL4B hsa-miR-101 beg:211 end:230 pic:3' AAGTCAATAGTGTCATGACAT 5'& |||||.| ||||||||| &5' ----GTTATTA-AGTACTGTA 3' RFPL4B hcmv-miR-UL112 beg:627 end:645 pic:3' TCGGACCTAGAGTGGCAGTGAA 5'& |||. | .||||.|| &5' ----TGGGA---AGTGTCATTT 3' RFPL4B hcmv-miR-UL70-3p beg:633 end:654 pic:3' GGCGCGCGGTC---GGGTAGGGG 5'& |.|.|| ||||||.| &5' ----GTGTCATTTACCCATCTC- 3' RFPL4B hiv1-miR-TAR-5p beg:480 end:504 pic:3' AGTCTAGACCAGATTGGTCTCTCT 5'& ||| || .|||||||| &5' -CAGCA-TGAAATT-TCAGAGAGA 3' RFPL4B hsa-miR-101star beg:183 end:200 pic:3' TCGTAGTCGTGACACTATTGAC 5'& .||| |.|||||| &5' -----TAGCTA---GGTAACTG 3' RFPL4B hsa-miR-106astar beg:332 end:353 pic:3' CATTCTTCACGAATGTAACGTC 5'& .|||| |||| ||||.| &5' --GAGAAAT-CTTAGATTGTA- 3' RFPL4B hsa-miR-106bstar beg:453 end:467 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& |||| |||||.| &5' -CAGC---------CAGTGTG- 3' RFPL4B hsa-miR-1197 beg:72 end:92 pic:3' TCTTCATCTGGTACACAGGAT 5'& .|||| |||. ||||| |. &5' GGAAG-AGATAATGTG-CT-- 3' RFPL4B hsa-miR-1238 beg:60 end:80 pic:3' CCCCGTCTGT-CT-GCTCCTTC 5'& ||| || || .||||||| &5' ----CAG-CATGATTGAGGAAG 3' RFPL4B hsa-miR-125a-5p beg:196 end:213 pic:3' AGTGTCCAATTTCCCAG-AGTCCCT 5'& .||||| |.||||| &5' -----------GGGGTCTTTAGGGA 3' RFPL4B hsa-miR-1262 beg:638 end:651 pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& |||.|||||| &5' ------------ATTTACCCAT 3' RFPL4B hsa-miR-1283 beg:120 end:143 pic:3' TCTTTCGCGAAAGGAAACATCT 5'& ||| .|. |||||||| &5' AGATTTTGTAGA-CTTTGTAG- 3' RFPL4B hsa-miR-1295 beg:38 end:56 pic:3' AGTGGGTCTAGACGCCGGATT 5'& ||| .| .|||||.| &5' ------AGAATTTTGGCCTGA 3' RFPL4B hsa-miR-130bstar beg:62 end:82 pic:3' CATCACGTTGT--CCCTTTCTCA 5'& ||| | |.||||| &5' -----GCATGATTGAGGAAGAG- 3' RFPL4B hsa-miR-146a beg:222 end:243 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |..| |||||||.|| &5' ---CTGTAAGCTTCAGTTTTC- 3' RFPL4B hsa-miR-146astar beg:481 end:501 pic:3' GACTTCTTG-AC-TTAAAGTCTCC 5'& |.| || |||||||||| &5' ------AGCATGAAATTTCAGAG- 3' RFPL4B hsa-miR-146b-5p beg:222 end:243 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& ||.| |||||||.|| &5' ---CTGTAAGCTTCAGTTTTC- 3' RFPL4B hsa-miR-15bstar beg:599 end:621 pic:3' ATCTCGT--CGTTTATTACTAAGC 5'& ||| |. |||..|||||| &5' ----GCATTGTTAATGGTGATTC- 3' RFPL4B hsa-miR-16-2star beg:500 end:518 pic:3' ATTTCGTC-GTGTCATTATAACC 5'& || || |.||||||| &5' ------AGACAAACTGATATTGG 3' RFPL4B hsa-miR-182star beg:511 end:528 pic:3' ATCAACCGTTCAGATCTTGGT 5'& |||| .| |||||.| &5' ---TTGGGGA----AGAACTA 3' RFPL4B hsa-miR-183 beg:76 end:95 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||. || ||||.||| &5' ---GAGA--TAAT-GTGCTATA 3' RFPL4B hsa-miR-186star beg:155 end:167 pic:3' GGGTTTTTTAAGTGGAAACCCG 5'& |..|||||| &5' ------------ATTTTTGGG- 3' RFPL4B hsa-miR-187star beg:123 end:144 pic:3' CGGGCCCAGGACA-C---AACATCGG 5'& |..||| | ||||||| &5' -------TTTTGTAGACTTTGTAGC- 3' RFPL4B hsa-miR-187star beg:169 end:191 pic:3' CGGGCCCAGGACAC----AACATCGG 5'& |..|||| |||||||. &5' -------TTTTGTGGAATTTGTAGCT 3' RFPL4B hsa-miR-191 beg:730 end:750 pic:3' GTCGACGAAAACCCTAAGGCAAC 5'& .|.||||||| |||||.. &5' -GGTTGCTTTT-GGATTTT---- 3' RFPL4B hsa-miR-191 beg:403 end:425 pic:3' GTCGACGAAA-ACCCTAAGGCAAC 5'& |||||.||| || ||||| &5' -AGCTGTTTTGTGTAATTCC---- 3' RFPL4B hsa-miR-1972 beg:37 end:56 pic:3' ACTCGGTGACACGGACCGGACT 5'& ||| |.| .|||||||| &5' -GAGA-ATT----TTGGCCTGA 3' RFPL4B hsa-miR-199a-3p beg:649 end:671 pic:3' ATTGGTTACACGTCTGATGACA 5'& .|||| ..|||||.||| &5' ---TCAATAATTGGACTATTGT 3' RFPL4B hsa-miR-199a-5p beg:505 end:519 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& ||| |.|.|||| &5' -----------CTG-ATATTGGG 3' RFPL4B hsa-miR-199b-3p beg:649 end:671 pic:3' ATTGGTTACACGTCTGATGACA 5'& .|||| ..|||||.||| &5' ---TCAATAATTGGACTATTGT 3' RFPL4B hsa-miR-19astar beg:127 end:149 pic:3' ACATCACGTTGATA-CGTTTTGA 5'& ||||| .|.| ||||||| &5' TGTAGACT--TTGTAGCAAAAC- 3' RFPL4B hsa-miR-19b-1star beg:126 end:149 pic:3' CGACCTACGTTTGGA----CGTTTTGA 5'& ||.|.||.| ||||||| &5' ------TGTAGACTTTGTAGCAAAAC- 3' RFPL4B hsa-miR-19b-2star beg:126 end:149 pic:3' ACTTTACGTTTGGA----CGTTTTGA 5'& ||.|.||.| ||||||| &5' -----TGTAGACTTTGTAGCAAAAC- 3' RFPL4B hsa-miR-200b beg:392 end:416 pic:3' AGTAGTAATGGTCCGTCATAAT 5'& ||||.||| .|| || || ||. &5' TCATTATT-TCAAGCTGTTTTG 3' RFPL4B hsa-miR-208a beg:303 end:320 pic:3' TGTTCGAAAAACG--AGCAGAATA 5'& ||| |.||||||| &5' ----------TGCCTTTGTCTTAT 3' RFPL4B hsa-miR-208b beg:299 end:320 pic:3' TGTT-TGGAAAACAAGCAGAATA 5'& || .||| |.||||||| &5' ACTATGCCT-----TTGTCTTAT 3' RFPL4B hsa-miR-2117 beg:30 end:46 pic:3' GACAGGAACCG-TTTCTCTTGT 5'& ||. ||||||||. &5' --------GGTGAAAGAGAAT- 3' RFPL4B hsa-miR-219-2-3p beg:135 end:155 pic:3' TGTCTACAGGTCGG--TGTTAAGA 5'& | .||| ||||||.| &5' -------TGTAGCAAAACAATTTT 3' RFPL4B hsa-miR-221 beg:548 end:571 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& ||||| |||| ||| ||.| &5' GAAACACAGCC-ACATA--AGTT 3' RFPL4B hsa-miR-221 beg:445 end:471 pic:3' CTTTGGGTCGTCTGTTACA-TCGA 5'& |||..|| ||| ||.||| ||.| &5' -AAATTCAACAGCCAGTGTGAGTT 3' RFPL4B hsa-miR-222 beg:447 end:471 pic:3' TGGGTCATCGGTCTACA-TCGA 5'& |..|| |||||| ||| ||.| &5' ATTCAACAGCCAG-TGTGAGTT 3' RFPL4B hsa-miR-223 beg:499 end:514 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ||||||||||.| &5' ----------GACAAACTGATA 3' RFPL4B hsa-miR-2355 beg:511 end:521 pic:3' AACAGGTAACATAGACCCCTA 5'& .|||||| &5' -------------TTGGGGA- 3' RFPL4B hsa-miR-3065-5p beg:357 end:377 pic:3' AGGTC-GTAGTCACTAAAACAACT 5'& |.|| .||.|| .|||||| &5' -CTAGATATTAG--GTTTTGT--- 3' RFPL4B hsa-miR-3065-5p beg:458 end:481 pic:3' AGGTCGTAGTCACTAAAACAACT 5'& ||||..| ||| |||||||||| &5' -CCAGTGTGAGTTATTTTGTTGA 3' RFPL4B hsa-miR-3129 beg:642 end:671 pic:3' TTTGGTTAGAG------ATGTGATGACG 5'& ||| ||||| |. ||||.||. &5' --ACCCATCTCAATAATTGGACTATTGT 3' RFPL4B hsa-miR-3136 beg:255 end:277 pic:3' TTACTGGGATGGATAAGTCAGTC 5'& .|| |.. ||.| ||||||| &5' GATAATTGTATC---TCAGTCA- 3' RFPL4B hsa-miR-3140 beg:6 end:24 pic:3' TGATGGACTTAAGGGTTTTCGA 5'& .|| ||||.|.||||| &5' ---GCCC---TTCCTAGAAGCT 3' RFPL4B hsa-miR-320a beg:219 end:242 pic:3' AGCGGGAGAGTTG-GGTCGAAAA 5'& | || | |.| .|||.||| &5' --GTACTGTAAGCTTCAGTTTT- 3' RFPL4B hsa-miR-320b beg:219 end:242 pic:3' AACGGGAGAGTTG-GGTCGAAAA 5'& | || | |.| .|||.||| &5' --GTACTGTAAGCTTCAGTTTT- 3' RFPL4B hsa-miR-335 beg:723 end:745 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||||| .|||||.|||. &5' ----TTTTCAAGGTTGCTTTTGG 3' RFPL4B hsa-miR-340star beg:278 end:299 pic:3' CGATATTTCATTGA-CTCTGCCT 5'& |||.| .||||.| ||||| &5' GCTGT--GGTAATTAGAGAC--- 3' RFPL4B hsa-miR-421 beg:462 end:482 pic:3' CGCGGGTTAATTACAGACAACTA 5'& . |.||| |.||||||| &5' ----TGAGTTAT--TTTGTTGAT 3' RFPL4B hsa-miR-425 beg:622 end:644 pic:3' AGT-TGCCCTCACTAGCACAGTAA 5'& || |.|||| |||||||| &5' TCTTATGGGAA-----GTGTCATT 3' RFPL4B hsa-miR-425star beg:417 end:429 pic:3' CCCGCCTGTGCTGTAAGGGCTA 5'& |||||.||| &5' -------------ATTCCTGAT 3' RFPL4B hsa-miR-4268 beg:617 end:641 pic:3' GTGTAGGACTCTCCTCCTCGG 5'& ||.||.|| | .||| | |.| &5' CATATTCTTATGGGAAGTGTC 3' RFPL4B hsa-miR-4270 beg:6 end:31 pic:3' CGGGAGGGGAC--TGAGGGACT 5'& |||||.||. | .|| |||| &5' GCCCTTCCTAGAAGCTTTCTGA 3' RFPL4B hsa-miR-4288 beg:486 end:507 pic:3' CCTTT-GAGTCG-TCTGTT 5'& |||| .|||| |||||| &5' -GAAATTTCAGAGAGACAA 3' RFPL4B hsa-miR-4309 beg:334 end:353 pic:3' ACCTTAGGATCTGAGGTC 5'& | ||||.||||.| .| &5' -GAAATCTTAGATTGTA- 3' RFPL4B hsa-miR-4329 beg:189 end:211 pic:3' CACC-TTGATCCCAG-AGTCC 5'& || ||||.||||| |.||| &5' --GGTAACTGGGGTCTTTAGG 3' RFPL4B hsa-miR-485-3p beg:454 end:468 pic:3' TCTCTCCTCTCGGCACATACTG 5'& |||| ||.||| &5' ---------AGCCA-GTGTGA- 3' RFPL4B hsa-miR-487a beg:192 end:214 pic:3' TTGACCTACAGGGA-CATACTAA 5'& ||||||. |||..| | ||| &5' AACTGGG-GTCTTTAGG--GAT- 3' RFPL4B hsa-miR-488 beg:517 end:537 pic:3' CTGGTTCTTTA-TCGGAAAGTT 5'& ||||| ||..||||| &5' ----AAGAACTAAGTTTTTCA- 3' RFPL4B hsa-miR-489 beg:199 end:219 pic:3' CGACGGCATATACACTACAGTG 5'& |.| || |||||.|. &5' ---GTCTT-TAGG-GATGTTAT 3' RFPL4B hsa-miR-496 beg:690 end:716 pic:3' CTCTAACCGGTACAT---------TATGAGT 5'& |||||| |||.||| &5' --------CCATGTTAACTAACACATATTCA 3' RFPL4B hsa-miR-511 beg:65 end:85 pic:3' ACTGACGTCTCGTTTTCTGTG 5'& |||.| ||| ||.|||.| &5' TGATT---GAGGAAGAGATA- 3' RFPL4B hsa-miR-514b-5p beg:58 end:78 pic:3' TACTAACGGAGGGAG-AACTCTT 5'& |.| | |||||.| &5' ------GTCAGCATGATTGAGGA 3' RFPL4B hsa-miR-516a-3p beg:542 end:561 pic:3' TGGGAGACTTTCCTTCGT 5'& ..||.||||| ||| &5' -TTCTTTGAAACACAGC- 3' RFPL4B hsa-miR-524-5p beg:120 end:143 pic:3' CTCTTTCACGAAGGGAAACATC 5'& ||| ||. |||||||| &5' -AGATTTTGTAGA-CTTTGTAG 3' RFPL4B hsa-miR-548b-5p beg:455 end:476 pic:3' CCGGTTTTGGTGTTAATGAAAA 5'& ||||. |.|||.||| &5' -GCCAGTGTG--AGTTATTTT- 3' RFPL4B hsa-miR-548c-5p beg:94 end:118 pic:3' CCGTTTTTGG--CGTTAATGAAAA 5'& |||||.||. |.|| |.|||| &5' -GCAAAGACTTGGTAA--ATTTTT 3' RFPL4B hsa-miR-548e beg:219 end:242 pic:3' ACGTTTTCA-TCAGAGTCAAAAA 5'& |.| || || |||||||| &5' -GTACT-GTAAGCTTCAGTTTT- 3' RFPL4B hsa-miR-548m beg:292 end:314 pic:3' GTTTTTGGTGTT-TATGGAAAC 5'& |.|.|| |.| ||.|||||| &5' -AGAGACAATACTATGCCTTTG 3' RFPL4B hsa-miR-548n beg:725 end:744 pic:3' TGTTTTAGGTGTTAATGAAAAC 5'& |.|| .||.|||||| &5' ------TTCAAGGTTGCTTTTG 3' RFPL4B hsa-miR-548t beg:518 end:542 pic:3' GTTTTTGGTGCT---AGTGAAAAC 5'& ||.|||.| |||.|||| &5' -AAGAACTAAGTTTTTCATTTTT- 3' RFPL4B hsa-miR-548v beg:126 end:144 pic:3' ACCACGTTTTCATTGACATCGA 5'& ||.|.| .|||||| &5' ---TGTAGACT---TTGTAGC- 3' RFPL4B hsa-miR-561 beg:121 end:140 pic:3' TGAAGTTCCTAGA--ATTTGAAAC 5'& |||. ||.|||||| &5' --------GATTTTGTAGACTTTG 3' RFPL4B hsa-miR-573 beg:385 end:406 pic:3' GACTAGTCAATGTGTAGTGAAGTC 5'& ||| || |||.|.|||| &5' ---ATCTTTTT--CATTATTTCA- 3' RFPL4B hsa-miR-590-5p beg:219 end:235 pic:3' GACGTGAAAATACTTATTCGAG 5'& |.||| .||||||. &5' --GTACT-------GTAAGCTT 3' RFPL4B hsa-miR-593 beg:289 end:300 pic:3' TCTTTGGGGTCGTCTCTGT 5'& .||||||| &5' -----------TAGAGACA 3' RFPL4B hsa-miR-593 beg:486 end:506 pic:3' TCTTTGGGGTCGTCTCTGT 5'& ||||. ||| ||||||| &5' -GAAATTTCAG-AGAGACA 3' RFPL4B hsa-miR-600 beg:338 end:356 pic:3' CTCGTTCCGAGAA-CAGACATTCA 5'& |||| | .||||||| &5' ---------TCTTAGATTGTAAGT 3' RFPL4B hsa-miR-625star beg:76 end:97 pic:3' ACTCCCCCTTTCAAGATATCAG 5'& ||| || ||||||| &5' -GAGATAAT--GTGCTATAGT- 3' RFPL4B hsa-miR-628-5p beg:48 end:69 pic:3' GGAGATCATTTATACAGTCGTA 5'& ||| || ||| |||||||| &5' CCTG-AG-AAAG--GTCAGCAT 3' RFPL4B hsa-miR-644 beg:542 end:566 pic:3' CGAGATTCTT----TCGGTGTGA 5'& .||| ||| |||||||. &5' -TTCTTTGAAACACAGCCACAT- 3' RFPL4B hsa-miR-647 beg:453 end:462 pic:3' CTTCCTTCACTCACGTCGGTG 5'& |||||| &5' --------------CAGCCA- 3' RFPL4B hsa-miR-659 beg:512 end:530 pic:3' ACCCCTGGGAGGGACTTGGTTC 5'& |||||| ||||.||| &5' TGGGGAA-------GAACTAAG 3' RFPL4B hsa-miR-671-5p beg:3 end:29 pic:3' GAGGTCGGGGAGG-TCC-CGAAGGA 5'& .||||||.||| || ||||.|| &5' --TCAGCCCTTCCTAGAAGCTTTCT 3' RFPL4B hsa-miR-769-5p beg:354 end:375 pic:3' TCGAGTCTTGGGTCTCCAGAGT 5'& |||| ||| ||||.|. &5' AGCT-AGATATT--AGGTTTT- 3' RFPL4B hsa-miR-875-3p beg:227 end:246 pic:3' GTGTTGGAGTCACAAAGGTCC 5'& |.|.||||| ||||.|| &5' ---AGCTTCAGT-TTTCTAG- 3' RFPL4B hsa-miR-876-5p beg:329 end:344 pic:3' ACCACTAAGTGTTTCTTTAGGT 5'& |.|.|||||||. &5' ---------ATAGAGAAATCT- 3' RFPL4B hsa-miR-934 beg:234 end:255 pic:3' GGTCACAGAGGTCAT-CATCTGT 5'& |||| |.||.||| |||||. &5' -CAGT-TTTCTAGTCTGTAGAT- 3' RFPL4B hsa-miR-935 beg:173 end:201 pic:3' CGCCATCGCCT------TCG--CCATTGACC 5'& |.||| ||| ||||||||| &5' ------GTGGAATTTGTAGCTAGGTAACTGG 3' RFPL4B hsa-miR-96star beg:57 end:73 pic:3' GTATAACCGTGACGTGTACTAA 5'& ||. .||||||| &5' ------GGTCA---GCATGATT 3' RFPL4B hsv1-miR-H11 beg:303 end:319 pic:3' CGCAAGCGTGAAACAGGATT 5'& .|| |||||||.|| &5' -----TGC-CTTTGTCTTA- 3' RFPL4B hsv2-miR-H13 beg:303 end:319 pic:3' GTCACGAGCGTGAAACGGGATT 5'& .|| |||||.|.|| &5' -------TGC-CTTTGTCTTA- 3' RFPL4B sv40-miR-S1-5p beg:3 end:16 pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& ||| ||||.|| &5' ----------TCA-GCCCTTC- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region RFPL4B High_conserved miR-133abc chr6:112672301 7-mer-A1 7 3pUTR RFPL4B High_conserved miR-139-5p chr6:112668553 7-mer-A1 11 5pUTR RFPL4B High_conserved miR-139-5p chr6:112671955 7-mer-A1 4 3pUTR RFPL4B High_conserved miR-143/1721/4770 chr6:112672356 7-mer-A1 9 3pUTR RFPL4B High_conserved miR-144 chr6:112671931 7-mer-A1 4 3pUTR RFPL4B High_conserved miR-150/5127 chr6:112671371 7-mer-A1 31 CDS RFPL4B High_conserved miR-150/5127 chr6:112671665 8-mer 11 CDS RFPL4B High_conserved miR-203 chr6:112672108 7-mer-A1 9 3pUTR RFPL4B High_conserved miR-205/205ab chr6:112671467 7-mer-m8 24 CDS RFPL4B High_conserved miR-21/590-5p chr6:112672063 7-mer-A1 7 3pUTR RFPL4B High_conserved miR-216a chr6:112670437 7-mer-m8 9 5pUTR RFPL4B High_conserved miR-218/218a chr6:112671140 7-mer-A1 4 CDS RFPL4B High_conserved miR-221/222/222ab/1928 chr6:112671846 7-mer-A1 13 3pUTR RFPL4B High_conserved miR-26ab/1297/4465 chr6:112670456 7-mer-A1 11 5pUTR RFPL4B High_conserved miR-101/101ab chr6:112671931 8-mer 4 3pUTR RFPL4B High_conserved miR-338/338-3p chr6:112668594 7-mer-A1 11 5pUTR RFPL4B High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr6:112671223 8-mer 22 CDS RFPL4B High_conserved miR-425/425-5p/489 chr6:112672345 7-mer-m8 7 3pUTR RFPL4B Medium_conserved miR-505/505-3p chr6:112671583 8-mer 11 CDS RFPL4B Medium_conserved miR-539/539-5p chr6:112670981 7-mer-m8 20 CDS RFPL4B Medium_conserved miR-653 chr6:112672160 7-mer-m8 0 3pUTR RFPL4B Medium_conserved miR-873 chr6:112672129 7-mer-A1 11 3pUTR RFPL4B Medium_conserved miR-875-5p chr6:112671025 8-mer 0 CDS RFPL4B Medium_conserved miR-876-5p/3167 chr6:112671566 8-mer 13 CDS RFPL4B Medium_conserved miR-197 chr6:112671080 8-mer 11 CDS RFPL4B Medium_conserved miR-224 chr6:112671555 7-mer-A1 7 CDS RFPL4B Medium_conserved miR-299/299-3p/3563-3p chr6:112672268 7-mer-A1 4 3pUTR RFPL4B Medium_conserved miR-324-5p chr6:112671213 7-mer-A1 31 CDS RFPL4B Medium_conserved miR-335/335-5p chr6:112671661 7-mer-m8 11 CDS RFPL4B Medium_conserved miR-340-5p chr6:112672381 7-mer-A1 7 3pUTR RFPL4B Medium_conserved miR-340-5p chr6:112672490 7-mer-A1 11 3pUTR RFPL4B Medium_conserved miR-342-3p chr6:112672171 7-mer-m8 13 3pUTR RFPL4B Medium_conserved miR-361-5p chr6:112672132 7-mer-A1 13 3pUTR RFPL4B Medium_conserved miR-125a-3p/1554 chr6:112670508 7-mer-m8 22 5pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RFPL4B RAID00010367 hsa-miR-1283 miRNA MIMAT0005799 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00328204 hsa-miR-299-3p miRNA MIMAT0000687 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00428712 hsa-miR-6857-3p miRNA MIMAT0027615 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00457840 hsa-miR-101-3p miRNA MIMAT0000099 RFPL4B mRNA 442247 Prediction 0.2202 RFPL4B RAID00515141 hsa-miR-425-5p miRNA MIMAT0003393 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00604613 hsa-miR-6818-3p miRNA MIMAT0027537 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00671827 hsa-miR-155-5p miRNA MIMAT0000646 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00679089 hsa-miR-21-5p miRNA MIMAT0000076 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00691402 hsa-miR-187-5p miRNA MIMAT0004561 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00748335 hsa-miR-143-3p miRNA MIMAT0000435 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00834688 hsa-miR-23b-3p miRNA MIMAT0000418 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID00920041 hsa-miR-873-5p miRNA MIMAT0004953 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID01107010 hsa-miR-570-3p miRNA MIMAT0003235 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID01190189 hsa-miR-6817-3p miRNA MIMAT0027535 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID01197436 hsa-miR-4668-3p miRNA MIMAT0019746 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID01725832 hsa-miR-133b miRNA MIMAT0000770 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID02320756 hsa-miR-6750-3p miRNA MIMAT0027401 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID02400558 hsa-miR-186-5p miRNA MIMAT0000456 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID02540064 hsa-miR-4699-3p miRNA MIMAT0019795 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID02690145 hsa-miR-5193 miRNA MIMAT0021124 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID02856886 hsa-miR-3692-3p miRNA MIMAT0018122 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID02981652 hsa-miR-23a-3p miRNA MIMAT0000078 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID03445929 hsa-miR-203a-3p miRNA MIMAT0000264 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID03497965 hsa-miR-590-5p miRNA MIMAT0003258 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID03649256 hsa-miR-653-5p miRNA MIMAT0003328 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID03728229 hsa-miR-31-5p miRNA MIMAT0000089 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID03885960 hsa-miR-133a-3p miRNA MIMAT0000427 RFPL4B mRNA 442247 Prediction 0.1828 RFPL4B RAID04061868 hsa-miR-342-3p miRNA MIMAT0000753 RFPL4B mRNA 442247 Prediction 0.1828