DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004529 mmu-miR-125b* 16818 Lck uccaGGGUUCUUG-GACUGA-ACa | || |:|| |||||| || ugcaCACAUGGACUCUGACUCUGu 2 19 85 108 [mm9:4:129225934-129225957:-] 0.5215 125 0 -17.17 -0.4613 MIMAT0000240 mmu-miR-207 16818 Lck cucccuccUCUCGGUCCUCUUCg |||| |||||||| gaagccauAGAG--AGGAGAAGg 2 16 269 289 [mm9:4:129225753-129225773:-] 0.5491 152 7 -16.91 -0.3010 MIMAT0004622 mmu-let-7c-1* 16818 Lck ccuuUCGAUCUUCCAACAUGUc ||:| : ||||||| augcAGUUUCUGUCUUGUACAc 2 19 138 159 [mm9:4:129225883-129225904:-] 0.5364 142 7 -8.37 -0.3633 MIMAT0004626 mmu-miR-18a* 16818 Lck gucuucCUCGUGA---AUCCCGUCa | || || |||||||| accacuGUGCCCUGGCUAGGGCAGa 2 17 29 53 [mm9:4:129225989-129226013:-] 0.4966 147 7 -18.14 -0.2355 MIMAT0004626 mmu-miR-18a* 16818 Lck gucuUCCUCGUGAAUCCCGUCa :|||| : ||||||| auucGGGAGGG--AAGGGCAGg 2 19 132 151 [mm9:4:129234123-129234142:-] 0.4815 143 7 -24.07 -0.2429 MIMAT0004627 mmu-miR-20a* 16818 Lck gaaAUUCA-CGAGCAUUACGUCa |: || | | |||||||| gcgUGUGUCACACAUAAUGCAGu 2 20 122 144 [mm9:4:129225898-129225920:-] 0.5364 150 7 -13.58 -0.7105 MIMAT0004640 mmu-miR-325 16818 Lck aacUAUCCUCCACGAGUUAUUu | | ||| ||||||||| cacACACCAGGAGCUCAAUAAa 2 20 406 427 [mm9:4:129225615-129225636:-] 0.5522 163 7 -16.56 -0.3193 MIMAT0004759 mmu-miR-466a-5p 16818 Lck auACAUGUACAUGUGUGUGUAu |||:|:|||:: ||||||| ccUGUGCGUGUGU-CACACAUa 2 21 117 137 [mm9:4:129225905-129225925:-] 0.5267 170 7 -25.68 -0.8656 MIMAT0004759 mmu-miR-466a-5p 16818 Lck auACAUGUACAUGUGUGUGUAu ||| | ||| |||||||| ucUGU-CUUGU--ACACACAUc 2 21 146 164 [mm9:4:129225878-129225896:-] 0.5460 155 7 -16.95 -0.7443 MIMAT0003894 mmu-miR-764-5p 16818 Lck uccuccUGUACA-CUCGUGg || ||| |||||| ucuuauACCUGUGGAGCACg 2 14 192 211 [mm9:4:129225831-129225850:-] 0.5460 121 6 -12.12 -0.4664 MIMAT0003469 mmu-miR-690 16818 Lck aaaccaaCACUCGGA-UCGGAAa |||||:|| |||||| ggagcacGUGAGUCUAAGCCUUg 2 16 204 226 [mm9:4:129225816-129225838:-] 0.5460 135 6 -21.11 -0.5272 MIMAT0003711 mmu-miR-652 16818 Lck guguuGGGAUCA-CCG-CGGUAa :||| || ||| ||||| ggcccUCCUUGUGGGCUGCCAUc 2 17 345 367 [mm9:4:129225675-129225697:-] 0.5522 123 0 -21.21 -0.2373 MIMAT0004849 mmu-miR-883a-3p 16818 Lck uaugACUCUCGACAACGUCAAu | | | | ||||||| ugugUCACACAUAAUGCAGUUu 2 19 125 146 [mm9:4:129225896-129225917:-] 0.5364 142 7 -9.89 -0.9150 MIMAT0004850 mmu-miR-883b-5p 16818 Lck acUGACGAUGGGUAAGAGU-CAu :|||| |:||| ||||| || ggGCUGCCAUCCAAUCUCAUGUc 2 21 357 379 [mm9:4:129225663-129225685:-] 0.5522 140 0 -24.88 -0.6194 MIMAT0004851 mmu-miR-883b-3p 16818 Lck uaugACUCUCUACAACGUCAAu | | | || ||||||| ugugUCACACAUAAUGCAGUUu 2 19 125 146 [mm9:4:129225896-129225917:-] 0.5364 150 7 -9.89 -0.9117 MIMAT0004875 mmu-miR-466b-5p 16818 Lck guACAUGUACAUGUGUGUGUAg |||:|:|||:: ||||||| ccUGUGCGUGUGU-CACACAUa 2 21 117 137 [mm9:4:129225905-129225925:-] 0.5267 170 7 -24.36 -0.8656 MIMAT0004875 mmu-miR-466b-5p 16818 Lck guACAUGUACAUGUGUGUGUAg ||| | ||| |||||||| ucUGU-CUUGU--ACACACAUc 2 21 146 164 [mm9:4:129225878-129225896:-] 0.5460 155 7 -17.58 -0.7443 MIMAT0004877 mmu-miR-466c-5p 16818 Lck auACAUGUACGUGUGUGUGUAg |||:|:||::: ||||||| ccUGUGCGUGUGU-CACACAUa 2 21 117 137 [mm9:4:129225905-129225925:-] 0.5267 166 7 -21.54 -0.8691 MIMAT0004877 mmu-miR-466c-5p 16818 Lck auACAUGUACGUGUGUGUGUAg ||| | || :|||||||| ucUGU-CUUG--UACACACAUc 2 21 146 164 [mm9:4:129225878-129225896:-] 0.5460 151 7 -16.44 -0.7480 MIMAT0004879 mmu-miR-466e-5p 16818 Lck auACAUGUACAUGUGUGUGUAg |||:|:|||:: ||||||| ccUGUGCGUGUGU-CACACAUa 2 21 117 137 [mm9:4:129225905-129225925:-] 0.5267 170 7 -24.31 -0.8656 MIMAT0004879 mmu-miR-466e-5p 16818 Lck auACAUGUACAUGUGUGUGUAg ||| | ||| |||||||| ucUGU-CUUGU--ACACACAUc 2 21 146 164 [mm9:4:129225878-129225896:-] 0.5460 155 7 -17.06 -0.7443 MIMAT0004883 mmu-miR-466g 16818 Lck acacacacguacaCAGACAua |||||| gagcucaauaaaaGUCUGUug 3 9 416 436 [mm9:4:129225606-129225626:-] 0.5365 120 0 -8.33 -0.1102 MIMAT0004884 mmu-miR-466h 16818 Lck auguguguUCGUGUACGUGUGu :|| ::||||||| aucuguguGGCCUGUGCACACa 2 15 71 92 [mm9:4:129225950-129225971:-] 0.5256 150 7 -18.19 -0.1848 MIMAT0004884 mmu-miR-466h 16818 Lck augUGUGUUCGUGUAC-GUGUGu || :: ||:::|| ||||| gaaACCUGUGCGUGUGUCACACa 2 20 113 135 [mm9:4:129225907-129225929:-] 0.5267 123 0 -17.93 -0.7684 MIMAT0004894 mmu-miR-574-3p 16818 Lck acacCCACACACGUACU-CGCAc ||| || | ||| |||| agaaGGUCUGCGAUUGAUGCGUg 2 19 284 306 [mm9:4:129225736-129225758:-] 0.5522 122 0 -17.92 -0.4905 MIMAT0005837 mmu-miR-1187 16818 Lck aauGUGUGUAUGUGUGUGUGUAu ::::|:|:::: ||||||| accUGUGCGUGUGU-CACACAUa 2 21 116 137 [mm9:4:129225905-129225926:-] 0.5267 150 7 -17.73 -0.8760 MIMAT0005837 mmu-miR-1187 16818 Lck aauguguguauGUGUGUGUGUAu :::|||||||| aguuucugucuUGUACACACAUc 2 13 142 164 [mm9:4:129225878-129225900:-] 0.5460 148 7 -13.16 -0.7554 MIMAT0005848 mmu-miR-466j 16818 Lck aaUGUGUGUA-CGUGUACGUGUGu |: ::::| || ::||||||| auAUCUGUGUGGCCUGUGCACACa 2 22 69 92 [mm9:4:129225950-129225973:-] 0.5256 152 7 -19.57 -0.1831 MIMAT0005848 mmu-miR-466j 16818 Lck aaUGUGUGUACGUGUAC-GUGUGu | || ::|||:::|| ||||| ugAAACCUGUGCGUGUGUCACACa 2 22 112 135 [mm9:4:129225907-129225930:-] 0.5267 133 0 -22.53 -0.7611 MIMAT0009393 mmu-miR-1930 16818 Lck ugCGACGUCCAUGA---UACCUCCa | ||: | ||| ||||||| ggGAUGUUUG-ACUGGGAUGGAGGa 2 21 70 93 [mm9:4:129234181-129234204:-] 0.4090 141 7 -19.15 -0.4305 MIMAT0009405 mmu-miR-1941-5p 16818 Lck uuCGGAGA--CAUGGUCGUA-GAGGGa ||||:| || ||| || ||||| agGCCUUUCGGUCCCAAGAUCCUCCCa 2 23 2 28 [mm9:4:129226014-129226040:-] 0.5945 133 0 -23.10 -0.6563 MIMAT0009406 mmu-miR-1941-3p 16818 Lck uacccUCUAU-GACGAUUCUAc :|||| || ||||||| gccuuGGAUACCUCCUAAGAUg 2 17 221 242 [mm9:4:129225800-129225821:-] 0.5460 159 7 -16.80 -0.1792 MIMAT0009407 mmu-miR-1942 16818 Lck guUGGUCUACUUCUGUAGACu ::| :| | ||||||| cuGUCUUGUACACACAUCUGu 2 20 147 167 [mm9:4:129225875-129225895:-] 0.5460 143 7 -10.59 -0.6104 MIMAT0009430 mmu-miR-1957 16818 Lck caguAUACGAGAUGGUGAc | || ||||||||| ugucUCUG-UCUACCACUg 2 16 305 322 [mm9:4:129225720-129225737:-] 0.5522 153 7 -21.82 -0.1494 MIMAT0009440 mmu-miR-1967 16818 Lck cguaGAAG-AGGGGUCCUAGGAGu :||| :|||| ||||||| ggccUUUCGGUCCCAAGAUCCUCc 2 20 3 26 [mm9:4:129226016-129226039:-] 0.5945 162 7 -24.91 -0.5592 MIMAT0009445 mmu-miR-1274a 16818 Lck accgCGGAC---U-UGUCCCUG-GACu ||||| | ||| |||| ||| ugugGCCUGUGCACACAUGGACUCUGa 2 19 76 102 [mm9:4:129225940-129225966:-] 0.5215 120 0 -22.99 -0.3849 MIMAT0009459 mmu-miR-1982* 16818 Lck ggaGGGGUCCUGGGAGGGUu :|||| ||:||||||| cggUCCCAAGAUCCUCCCAa 2 18 10 29 [mm9:4:129226013-129226032:-] 0.4601 169 7 -31.02 -0.7608 MIMAT0011210 mmu-miR-2134 16818 Lck cguGGGGCAAAGGGUUCUg :::|| |||||||| gccUUUCG-GUCCCAAGAu 2 17 4 21 [mm9:4:129226021-129226038:-] 0.5945 146 7 -21.79 -0.7423 MIMAT0011211 mmu-miR-2135 16818 Lck caAAGCCGGGGUUCU-GGAGa |||||:||||||| |||| cuUUCGGUCCCAAGAUCCUCc 2 19 6 26 [mm9:4:129226016-129226036:-] 0.4601 150 0 -32.94 -0.3061 MIMAT0014852 mmu-miR-3072* 16818 Lck ggacgggagGGAGCCCCAGGGa |||: |||||| -----uaggCCUUUCGGUCCCa 2 14 1 17 [mm9:4:129226025-129226041:-] 0.5945 121 6 -20.38 -0.1585 MIMAT0015642 mmu-miR-3471 16818 Lck uuacgGAAUGUCAACCUAGAGu | | ||| ||||||| guucaCAUCCAG--GGAUCUCa 2 18 25 44 [mm9:4:129234230-129234249:-] 0.3492 146 7 -15.11 -0.1053 MIMAT0000147 mmu-miR-135a 16818 Lck aguguauccuuauuUUUCGGUAu :||||||| ccguuccauuuccuGAAGCCAUa 2 10 255 277 [mm9:4:129225765-129225787:-] 0.5491 141 7 -12.20 -0.6117 MIMAT0000151 mmu-miR-140 16818 Lck gaugguaucccauuUUGGUGAc ||||||| cccaagauccucccAACCACUg 2 9 14 35 [mm9:4:129226007-129226028:-] 0.4601 140 7 -16.29 -0.3727 MIMAT0000156 mmu-miR-144 16818 Lck ucaUGUA-GUAG-AUAU-GACAu |||| ::|| |||| |||| uacACAUGUGUCUUAUACCUGUg 2 18 182 204 [mm9:4:129225838-129225860:-] 0.5460 123 0 -11.19 -0.1526 MIMAT0000212 mmu-miR-183 16818 Lck ucaCUUAAGAUGGUCACGGUAu ||||| || ||||||| augGAAUU---CCUGUGCCAUa 2 20 53 71 [mm9:4:129225971-129225989:-] 0.5297 155 7 -19.33 -0.6469 MIMAT0000223 mmu-miR-193 16818 Lck ugacccugaAACAUCCGGUCAa ||| |||||||| auaucugagUUGAAGGCCAGUc 2 14 155 176 [mm9:4:129234098-129234119:-] 0.4829 157 7 -19.62 -0.1724 MIMAT0000235 mmu-miR-202-3p 16818 Lck agaaGGGUACGCGA--UAUGGAGa :|:| || :| ||||||| ugagUCUAAGCCUUGGAUACCUCc 2 19 212 235 [mm9:4:129225807-129225830:-] 0.5460 149 7 -15.01 -0.2945 MIMAT0004576 mmu-miR-296-3p 16818 Lck ccucucggAGGUGGGUUGG-GAg ||| ||||||| || ucccaagaUCCUCCCAACCACUg 2 15 13 35 [mm9:4:129226007-129226029:-] 0.4601 126 0 -21.14 -0.2535 MIMAT0000381 mmu-miR-34c 16818 Lck cguuagucGAUUGAU-GUGACGGa ||: ||| ||||||| gcgugucuCUGUCUACCACUGCCu 2 16 302 325 [mm9:4:129225717-129225740:-] 0.5522 154 7 -23.02 -0.4424 MIMAT0000382 mmu-miR-34b-5p 16818 Lck uguuagucGAUUAAU-GUGACGGa ||: || ||||||| gcgugucuCUGUCUACCACUGCCu 2 16 302 325 [mm9:4:129225717-129225740:-] 0.5522 146 7 -19.46 -0.4424 MIMAT0000542 mmu-miR-34a 16818 Lck uguuGGUCGAUUCUGUGACGGu |:: ||| ||||||| gucuCUGUCUA--CCACUGCCu 2 19 306 325 [mm9:4:129225717-129225736:-] 0.5522 143 7 -14.47 -0.4456 MIMAT0000612 mmu-miR-135b 16818 Lck aguguauccuuacuUUUCGGUAu :||||||| ccguuccauuuccuGAAGCCAUa 2 10 255 277 [mm9:4:129225765-129225787:-] 0.5491 141 7 -12.20 -0.6117 MIMAT0000679 mmu-miR-217 16818 Lck agguCAGUCAAGGACUACGUCAu |||| | | ||||||| guguGUCA-CACAUAAUGCAGUu 2 20 124 145 [mm9:4:129225897-129225918:-] 0.5364 149 7 -12.87 -0.6923 MIMAT0000743 mmu-miR-379 16818 Lck ggAUGCA-AGGUAUCAGAUGGu |:||| ||: | ||||||| gaUGCGUGUCUCU-GUCUACCa 2 20 299 319 [mm9:4:129225723-129225743:-] 0.5522 156 7 -21.77 -0.7000 MIMAT0001533 mmu-miR-448 16818 Lck uacCCUGUAGGAUGUA-UACGUu | :::|| |||| ||||| ugcGUGUGUCACACAUAAUGCAg 2 20 121 143 [mm9:4:129225899-129225921:-] 0.5364 123 0 -12.84 -0.6734 MIMAT0001542 mmu-miR-449a 16818 Lck uggucGAUUGUUAUGUGACGGu ||: | | ||||||| ugucuCUGUCUA-CCACUGCCu 2 18 305 325 [mm9:4:129225717-129225737:-] 0.5522 143 7 -14.19 -0.4456 MIMAT0003450 mmu-miR-488 16818 Lck cugguucuuUGUCGGAAAGUu || |||||||| cugucuaccACUGCCUUUCAg 2 13 310 330 [mm9:4:129225712-129225732:-] 0.5522 152 7 -16.36 -0.1896 MIMAT0003460 mmu-miR-449c 16818 Lck ggucGAUCGUUACGUGACGGa ||: | | ||||||| gucuCUGUCUA-CCACUGCCu 2 18 306 325 [mm9:4:129225717-129225736:-] 0.5522 143 7 -16.01 -0.4456 MIMAT0004855 mmu-miR-876-3p 16818 Lck acuuaaugaaacauUUGGUGAu ||||||| cccaagauccucccAACCACUg 2 9 14 35 [mm9:4:129226007-129226028:-] 0.4601 140 7 -10.63 -0.3668 MIMAT0004859 mmu-miR-193b 16818 Lck ucgcccugaAACACCCGGUCAa ||| ||||||| auaucugagUUGAAGGCCAGUc 2 14 155 176 [mm9:4:129234098-129234119:-] 0.4829 149 7 -15.27 -0.1724 MIMAT0004869 mmu-miR-421 16818 Lck cgCGGGUUAAUUACAGACAACUa ||:|||| || ||||||||| gaGCUCAAUAAAAGUCUGUUGAa 2 22 416 438 [mm9:4:129225604-129225626:-] 0.5365 185 7 -23.02 -1.0413 MIMAT0005447 mmu-miR-449b 16818 Lck cggucGAUUG-UUGUGACGGa ||: | | ||||||| ugucuCUGUCUACCACUGCCu 2 16 305 325 [mm9:4:129225717-129225737:-] 0.5522 146 7 -18.25 -0.4424

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G006354 Lck Mus musculus 16818 11278409

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Lck mmu-miR-466d-5p beg:395 end:413 pic:3' GTACATGTACATGCGTGTGTGT 5'& ||.| |||||||| &5' ---GTGCCTA---GCACACAC- 3' Lck mmu-miR-466k beg:395 end:413 pic:3' AGTGTACATGTACATGTGTGTGT 5'& ||.| .||||||| &5' ------GTGCCTA-GCACACAC- 3' Lck mmu-miR-466a-5p beg:118 end:138 pic:3' ATACATGTACAT-GTGTGTGTAT 5'& |||.|.|||. ||||||.| &5' --TGTGCGTGTGTCACACATA-- 3' Lck mmu-miR-466b-5p beg:118 end:138 pic:3' GTACATGTACAT-GTGTGTGTAG 5'& |||.|.|||. ||||||.| &5' --TGTGCGTGTGTCACACATA-- 3' Lck mmu-miR-466e-5p beg:118 end:138 pic:3' ATACATGTACAT-GTGTGTGTAG 5'& |||.|.|||. ||||||.| &5' --TGTGCGTGTGTCACACATA-- 3' Lck mmu-miR-34a beg:307 end:325 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& |.. ||| ||||||| &5' ----CTGTCTAC--CACTGCC- 3' Lck mmu-miR-449a beg:315 end:325 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||||||| &5' --------------CACTGCC- 3' Lck mmu-miR-128 beg:22 end:37 pic:3' TTTCTCTGGCCAAGTGACACT 5'& || ||||||| &5' -------CCCAACCACTGTG- 3' Lck mghv-miR-M1-6 beg:129 end:148 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& ||| |..||||||| &5' -----CACATAATGCAGTTTC- 3' Lck mmu-miR-2134 beg:4 end:22 pic:3' CGTGGGGCAAAGGGTTCTG 5'& . || ||||||||. &5' ---TTTCGG-TCCCAAGAT 3' Lck mmu-miR-1982star beg:10 end:30 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& .|||| ||.|||||||| &5' ---TCCCAAGATCCTCCCAA 3' Lck mmu-miR-488 beg:313 end:330 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||| || ||||||||. &5' -ACC-----ACTGCCTTTCAG 3' Lck mmu-miR-1941-3p beg:223 end:243 pic:3' TACCCTCTATGAC-GATTCTAC 5'& .||||| |||||||| &5' -----GGATACCTCCTAAGATG 3' Lck mmu-miR-183 beg:53 end:72 pic:3' TCACTTAAGATGGTCACGGTAT 5'& |||||| |||||||| &5' ---GAATTCCT---GTGCCATA 3' Lck mcmv-miR-M87-1 beg:343 end:365 pic:3' CGACGGCGACGGCTG--CCGACGGA 5'& ||| || || ||||||| &5' ---GCC-CT-CCTTGTGGGCTGCC- 3' Lck mmu-let-7b beg:307 end:327 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& | . ||| |||.|||. &5' --CTGTCT-ACC-ACTGCCTT- 3' Lck mmu-let-7e beg:307 end:327 pic:3' TTGATATGTTGGAGGATGGAGT 5'& ||.| | ||| ||.|||. &5' --CTGT-CTACCA-CTGCCTT- 3' Lck mmu-miR-1188 beg:391 end:415 pic:3' AGGAC--CGGGTTGGAGTGTGGT 5'& ||||| |||.|.| ||||||| &5' TCCTGGTGCCTAGCA-CACACCA 3' Lck mmu-miR-1197 beg:175 end:197 pic:3' TCTTCATC-TG-GTACACAGGAT 5'& ..|| || ||||||||.|| &5' --GGGTTCTACACATGTGTCTTA 3' Lck mmu-miR-135astar beg:89 end:109 pic:3' GCGGTGCC-GAGGTTAGGGATAT 5'& ||.|| ||| | |.||.|| &5' ---CATGGACTCTGA-CTCTGTA 3' Lck mmu-miR-145star beg:325 end:345 pic:3' GTTCTTGTCA--TAAAGGTCCTTA 5'& ||| .| |||||||| &5' ------CAGAGGGTCTCCAGGAA- 3' Lck mmu-miR-145star beg:409 end:419 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||||. &5' --------------CCAGGAG- 3' Lck mmu-miR-151-3p beg:201 end:220 pic:3' GGAGTTCCTCG-G-AGTCAGATC 5'& ||||| | | |||||| &5' ------GGAGCACGTGAGTCTA- 3' Lck mmu-miR-15astar beg:61 end:85 pic:3' ACTCCGTCGTGT---CATACCGGAC 5'& |. ||.| ||.||||||| &5' ----GTGCCATATCTGTGTGGCCTG 3' Lck mmu-miR-184 beg:138 end:153 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& ||| |.||.|||. &5' --------CAG-TTTCTGTCT- 3' Lck mmu-miR-184 beg:301 end:317 pic:3' TGGGAATAGTCA-AGAGGCAGGT 5'& || ||||.|||.| &5' ----------GTGTCTCTGTCTA 3' Lck mmu-miR-184 beg:369 end:396 pic:3' TGGGAATAGT--CAA--GAGGCAGGT 5'& |.| |.|| || .||.|||| &5' -CTCATGTCTCTGTGTGTTCTGTCC- 3' Lck mmu-miR-18astar beg:39 end:53 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& .|| |||||||| &5' -------GGC---TAGGGCAG- 3' Lck mmu-miR-1935 beg:296 end:316 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||| ||. |.|||||.|| &5' ---GATGCGT--GTCTCTGTCT 3' Lck mmu-miR-1940 beg:307 end:341 pic:3' TTGAC-GA-GGTGGA--AGAGTCA---GGAGGTA 5'& ||| || ||||. |.|||| .||||| &5' --CTGTCTACCACTGCCTTTCAGAGGGTCTCCA- 3' Lck mmu-miR-1956 beg:207 end:230 pic:3' AGGCGACTGAG--TCGGGACCTGA 5'& || ||| || ||||.||||. &5' --CG-TGAGTCTAAGCCTTGGAT- 3' Lck mmu-miR-1957 beg:303 end:323 pic:3' CAGTATACGAGATGGTGAC 5'& ||| || |||||||||| &5' GTCTC-TG-TCTACCACTG 3' Lck mmu-miR-1957 beg:183 end:205 pic:3' CAGTATAC-GAG-ATGGTGAC 5'& |||.|| ||. |||| || &5' --CATGTGTCTTATACCTGTG 3' Lck mmu-miR-1967 beg:4 end:26 pic:3' CGTAGAAGA-GGGGTCCTAGGAGT 5'& .||| .|||| ||||||| &5' ----TTTCGGTCCCAAGATCCTC- 3' Lck mmu-miR-1969 beg:293 end:316 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& |.. ||| |||||..||| &5' ATTGATGCGT--GTCTCTGTCT- 3' Lck mmu-miR-1969 beg:131 end:154 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& ||| |. |||.||..|||| &5' ---CATAATGCAGTTTCTGTCTT 3' Lck mmu-miR-207 beg:266 end:289 pic:3' CTCCCTCCTCTCGG------TCCTCTTCG 5'& || |||| |||||||| &5' -------GA-AGCCATAGAGAGGAGAAG- 3' Lck mmu-miR-20astar beg:123 end:145 pic:3' GAAATTCACGA---GCATTACGTCA 5'& |||. | ||||||||| &5' ------GTGTCACACATAATGCAGT 3' Lck mmu-miR-210 beg:139 end:159 pic:3' AGTCGGCGACAGTGTGCGTGTC 5'& |||. ||||| .|.||| &5' -CAGTTTCTGTCT--TGTACA- 3' Lck mmu-miR-2134 beg:226 end:242 pic:3' CGTGGGGCAAAGGGTTCTG 5'& .||| |||.||||. &5' -TACC-----TCCTAAGAT 3' Lck mmu-miR-2135 beg:4 end:26 pic:3' CAAAGCCGGGGTTCT-GGAGA 5'& ||||||.||||||| |||| &5' -TTTCGGTCCCAAGATCCTC- 3' Lck mmu-miR-2141 beg:220 end:237 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||| ||.||||||| &5' --CTTG---GATACCTCCT 3' Lck mmu-miR-2146 beg:329 end:341 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||. |||||| &5' -----GGG-----TCTCCA- 3' Lck mmu-miR-2146 beg:86 end:109 pic:3' GTGTACCTTGGGAA-GAGGTG 5'& ||||||| ||.|| ||| . &5' CACATGG-ACTCTGACTCTGT 3' Lck mmu-miR-27astar beg:207 end:226 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& |. ||. |||||||.| &5' ----CGTGAGT--CTAAGCCTT 3' Lck mmu-miR-30c-2star beg:20 end:29 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |||||| &5' ---------------CTCCCA- 3' Lck mmu-miR-325 beg:411 end:428 pic:3' AACTATCCTCCACGAGTTATTT 5'& ||| |||||||||| &5' --------AGGAGCTCAATAAA 3' Lck mmu-miR-330star beg:375 end:402 pic:3' AGAGACGTCCGGGACACGAA-ACG 5'& ||||||.. |..|||| || ||| &5' TCTCTGTGTGTTCTGTCCTGGTGC 3' Lck mmu-miR-331-5p beg:55 end:75 pic:3' CCTAGGGACCCTGGTATGGATC 5'& ||.|||| .|||||.||. &5' --ATTCCTGT-GCCATATCTG- 3' Lck mmu-miR-3475 beg:323 end:343 pic:3' AAGTTTGGTACACGGAGGTCT 5'& ||||.| | |.||||||. &5' TTCAGAG---G-GTCTCCAGG 3' Lck mmu-miR-34a beg:356 end:366 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .|||||| &5' ---------------GCTGCCA 3' Lck mmu-miR-34b-5p beg:303 end:326 pic:3' TGTTAGTCGATTAAT-GTGACGGA 5'& .|| ||. || |||||||| &5' ---GTCT-CTGTCTACCACTGCCT 3' Lck mmu-miR-34c beg:303 end:326 pic:3' CGTTAGTCGATTGAT-GTGACGGA 5'& .|| ||. ||| |||||||| &5' ---GTCT-CTGTCTACCACTGCCT 3' Lck mmu-miR-376c beg:375 end:387 pic:3' TGCACTTTAAAGGAGATACAA 5'& .||||.||| &5' -----------TCTCTGTGT- 3' Lck mmu-miR-379 beg:298 end:320 pic:3' GGATGCA-AGGTATCAGATGGT 5'& |.||| ||. |||||||| &5' --TGCGTGTCTCT-GTCTACCA 3' Lck mmu-miR-421 beg:415 end:438 pic:3' CGCGGGTTAATTACAGACAACTA 5'& ||.|||| || ||||||||| &5' --GCTCAATAAAAGTCTGTTGA- 3' Lck mmu-miR-423-5p beg:309 end:330 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |||| | |||||..||| &5' ---GTCTAC--CACTGCCTTTCA 3' Lck mmu-miR-431star beg:281 end:307 pic:3' TCTTCGGGACGTT--CTGCTGGAC 5'& ||||| .||||.| ||.| | || &5' AGAAGGTCTGCGATTGATG-CGTG 3' Lck mmu-miR-432 beg:327 end:344 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& || |||||.|| &5' ---------GAGGGTCTCCAGGA 3' Lck mmu-miR-449a beg:345 end:366 pic:3' TGGTCGATTGTTATGTGACGGT 5'& || || .|. .|||||| &5' -CCTCCTT---GTGGGCTGCCA 3' Lck mmu-miR-449b beg:303 end:326 pic:3' CGGT--CGATTGTTGTGACGGA 5'& |.| |. || |||||||| &5' GTCTCTGTCTAC--CACTGCCT 3' Lck mmu-miR-449c beg:315 end:326 pic:3' GGTCGATCGTTACGTGACGGA 5'& |||||||| &5' -------------CACTGCCT 3' Lck mmu-miR-450b-3p beg:9 end:30 pic:3' TACGTACGTTTTACAAGGGTTA 5'& |. |||.|| |||||| &5' --GTCC-CAAGATCCTCCCAA- 3' Lck mmu-miR-455 beg:343 end:364 pic:3' CACATATACGGG-----CACCTGACG 5'& |||| ||||.|||| &5' --------GCCCTCCTTGTGGGCTGC 3' Lck mmu-miR-466f beg:72 end:95 pic:3' TGTACG-TGTACGTGTGTGTGCA 5'& .||. .| || ||||||.| &5' --GTGTGGCCTGTGCACACATG- 3' Lck mmu-miR-466h beg:76 end:93 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& .|| ..|||||||| &5' --------GGCCTGTGCACACA 3' Lck mmu-miR-466j beg:82 end:113 pic:3' AATGTGTGTACGTGT-------ACGTGTGT 5'& |.|||||||| || ||.|||. &5' -TGCACACATGGACTCTGACTCTGTACAT- 3' Lck mmu-miR-467e beg:113 end:135 pic:3' TGTATATGTACG-AGTGTGAATA 5'& || |.|.|.||. |||||| &5' ACCTGTGCGTGTGTCACAC---- 3' Lck mmu-miR-470 beg:323 end:345 pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& .||| .| |.| ||||.||| &5' -TTCAGAGG-GTC--TCCAGGAA 3' Lck mmu-miR-493 beg:398 end:423 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||| ||||||| |||| | ||| &5' CCTAGCACACACCAGGAGC-TCA 3' Lck mmu-miR-540-3p beg:90 end:105 pic:3' GGTCCTAGCTGGAGACTGGA 5'& .| |||||||. &5' -------TGGACTCTGACT- 3' Lck mmu-miR-542-5p beg:87 end:103 pic:3' AGCACTGTACTACTAGGGGCTC 5'& ||||| || |.|.|| &5' -----ACATG--GA-CTCTGA- 3' Lck mmu-miR-652 beg:57 end:71 pic:3' GTGTTGGGATCACCGCGGTAA 5'& .||| |.||||| &5' -----TCCT----GTGCCAT- 3' Lck mmu-miR-669g beg:120 end:143 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& |.||| |||| |.|||||| &5' --CGTGTGT-CACACATAATGCA 3' Lck mmu-miR-673-3p beg:206 end:229 pic:3' CCACGTGT-CTT-GAGTCGGGGCCT 5'& ||||. ||. || ||||..||| &5' ---GCACGTGAGTCTAAGCCTTGGA 3' Lck mmu-miR-680 beg:228 end:246 pic:3' GGGGGTACAGTCGTCTACGGG 5'& ||.|| |||||.|. &5' CCTCCTA------AGATGTCT 3' Lck mmu-miR-688 beg:72 end:87 pic:3' CTTATTCATCAGCGGACGCT 5'& || || |||||.| &5' ------GT-GTGGCCTGTG- 3' Lck mmu-miR-691 beg:331 end:345 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |.||| |||||| &5' ------GTCTC----CAGGAA- 3' Lck mmu-miR-692 beg:265 end:284 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||| || | .|.||||. &5' ---TGAAGC-CATAGAGAGG- 3' Lck mmu-miR-761 beg:415 end:437 pic:3' ACAC-AGTCAAAGTGGGACGACG 5'& | ||| | .|||.|| &5' ---GCTCAATAAAAGTCTGTTG- 3' Lck mmu-miR-874 beg:31 end:53 pic:3' AGCCA-GGGAGCCCGGTCCCGTC 5'& | || |||| |||.||||||| &5' -CTGTGCCCT--GGCTAGGGCAG 3' Lck mmu-miR-875-3p beg:371 end:391 pic:3' GTATCGGAGTCATAAAAGTCC 5'& ||| |.||| ||.| ||| &5' CAT-GTCTCTGTGTGTTC--- 3' Lck mmu-miR-876-5p beg:46 end:62 pic:3' ATCACTAAGTGTCT-CTTTAGGT 5'& .|||| |.|||.| &5' ---------GCAGATGGAATTC- 3' Lck mmu-miR-879 beg:210 end:226 pic:3' CCGAATCTCGATATTCGGAGA 5'& |||. |||||||. &5' ------GAGTC-TAAGCCTT- 3' Lck mmu-miR-466h beg:82 end:113 pic:3' ATGTGTGTTCGTGT-------ACGTGTGT 5'& |.|||||| | || ||.|||. &5' TGCACACATGGACTCTGACTCTGTACAT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Lck RAID00137996 mmu-miR-449b miRNA MIMAT0005447 Lck mRNA 16818 Prediction 0.2202 Lck RAID00584700 mmu-miR-3544-5p miRNA MIMAT0022353 Lck mRNA 16818 Prediction 0.1828 Lck RAID01026367 mmu-miR-3064-3p miRNA MIMAT0014835 Lck mRNA 16818 Prediction 0.1828 Lck RAID01342068 mmu-miR-6996-5p miRNA MIMAT0027894 Lck mRNA 16818 Prediction 0.1828 Lck RAID01460212 mmu-miR-466p-5p miRNA MIMAT0014891 Lck mRNA 16818 Prediction 0.1828 Lck RAID01607959 mmu-miR-217-5p miRNA MIMAT0000679 Lck mRNA 16818 Prediction 0.1828 Lck RAID01724210 mmu-miR-466n-5p miRNA MIMAT0014893 Lck mRNA 16818 Prediction 0.1828 Lck RAID01815658 mmu-miR-466a-5p miRNA MIMAT0004759 Lck mRNA 16818 Prediction 0.1828 Lck RAID01945298 mmu-miR-448-3p miRNA MIMAT0001533 Lck mRNA 16818 Prediction 0.1828 Lck RAID01992215 mmu-miR-876-3p miRNA MIMAT0004855 Lck mRNA 16818 Prediction 0.1828 Lck RAID02010372 mmu-miR-488-3p miRNA MIMAT0003450 Lck mRNA 16818 Prediction 0.1828 Lck RAID02118367 mmu-mir-325 miRNA MI0000597 Lck mRNA 16818 Prediction 0.1828 Lck RAID02121699 mmu-miR-193b-3p miRNA MIMAT0004859 Lck mRNA 16818 Prediction 0.1828 Lck RAID02123519 mmu-miR-20a-3p miRNA MIMAT0004627 Lck mRNA 16818 Prediction 0.1828 Lck RAID02218593 mmu-miR-6937-3p miRNA MIMAT0027775 Lck mRNA 16818 Prediction 0.1828 Lck RAID02251730 mmu-miR-7229-3p miRNA MIMAT0028427 Lck mRNA 16818 Prediction 0.1828 Lck RAID02302268 mmu-miR-1187 miRNA MIMAT0005837 Lck mRNA 16818 Prediction 0.1828 Lck RAID02352764 mmu-miR-135a-5p miRNA MIMAT0000147 Lck mRNA 16818 Prediction 0.1828 Lck RAID02356497 mmu-miR-466l-5p miRNA MIMAT0017322 Lck mRNA 16818 Prediction 0.1828 Lck RAID02416180 mmu-miR-1193-5p miRNA MIMAT0017329 Lck mRNA 16818 Prediction 0.1828 Lck RAID02446681 mmu-miR-379-5p miRNA MIMAT0000743 Lck mRNA 16818 Prediction 0.2202 Lck RAID02472396 mmu-miR-325-3p miRNA MIMAT0004640 Lck mRNA 16818 Prediction 0.2202 Lck RAID03041391 mmu-miR-1982-5p miRNA MIMAT0009459 Lck mRNA 16818 Prediction 0.1828 Lck RAID03206300 mmu-miR-449a-5p miRNA MIMAT0001542 Lck mRNA 16818 Prediction 0.2202 Lck RAID03247259 mmu-miR-183-5p miRNA MIMAT0000212 Lck mRNA 16818 Prediction 0.2381 Lck RAID03271953 mmu-miR-140-5p miRNA MIMAT0000151 Lck mRNA 16818 Prediction 0.1828 Lck RAID03376942 mmu-miR-144-3p miRNA MIMAT0000156 Lck mRNA 16818 Prediction 0.1828 Lck RAID03398868 mmu-miR-135b-5p miRNA MIMAT0000612 Lck mRNA 16818 Prediction 0.1828 Lck RAID03581480 mmu-miR-34c-5p miRNA MIMAT0000381 Lck mRNA 16818 Prediction 0.2202 Lck RAID03591757 mmu-miR-7049-3p miRNA MIMAT0028003 Lck mRNA 16818 Prediction 0.1828 Lck RAID03653449 mmu-miR-193a-3p miRNA MIMAT0000223 Lck mRNA 16818 Prediction 0.1828 Lck RAID03693033 mmu-miR-34b-5p miRNA MIMAT0000382 Lck mRNA 16818 Prediction 0.2202 Lck RAID03696127 mmu-miR-296-3p miRNA MIMAT0004576 Lck mRNA 16818 Prediction 0.1828 Lck RAID03702674 mmu-miR-466e-5p miRNA MIMAT0004879 Lck mRNA 16818 Prediction 0.1828 Lck RAID03743664 mmu-miR-202-3p miRNA MIMAT0000235 Lck mRNA 16818 Prediction 0.1828 Lck RAID03754992 mmu-miR-449c-5p miRNA MIMAT0003460 Lck mRNA 16818 Prediction 0.2202 Lck RAID03820130 mmu-miR-34a-5p miRNA MIMAT0000542 Lck mRNA 16818 Prediction 0.2202 Lck RAID04058024 mmu-miR-421-3p miRNA MIMAT0004869 Lck mRNA 16818 Prediction 0.2202 Lck RAID04062346 mmu-miR-672-3p miRNA MIMAT0017241 Lck mRNA 16818 Prediction 0.1828