DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Hck ATTTA 191-1765 1993-1997;2019-2023

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004547 mmu-miR-203* 15162 Hck acaacuUGACAGUUCU-UGGUGa ||| || ||| ||||| gggcccACUCUC-AGACACCACa 2 17 63 84 [mm9:2:152976948-152976969:+] 0.4302 122 0 -13.48 -0.2307 MIMAT0004579 mmu-miR-302a* 15162 Hck cguucAUGUUGGUGC-AAAUUCa ||:|:|:::| |||||| caaucUAUAGCUGUGAUUUAAGu 2 18 213 235 [mm9:2:152977098-152977120:+] 0.5658 129 6 -14.93 -0.7175 MIMAT0000650 mmu-miR-17* 15162 Hck gauguucacGGGAGUGACGUCa | | |||||||| accacaccaCACACACUGCAGc 2 14 79 100 [mm9:2:152976964-152976985:+] 0.4302 149 7 -16.25 -0.1313 MIMAT0004691 mmu-miR-382* 15162 Hck uuuuucacaacaggcACUUACu |||||| uuuaaauaaaagauaUGAAUGu 2 8 255 276 [mm9:2:152977140-152977161:+] 0.5987 120 6 -7.26 -0.2295 MIMAT0004788 mmu-miR-20b* 15162 Hck gaucuucacGAGUGUGACGUCa | |||||||||| accacaccaCACACACUGCAGc 2 14 79 100 [mm9:2:152976964-152976985:+] 0.4302 157 7 -19.50 -0.1313 MIMAT0003731 mmu-miR-671-5p 15162 Hck gaggucggggAGGUCCCGAAGGa || | |||||:| gauaugaaugUCAAAGGCUUUC- 2 14 266 287 [mm9:2:152977151-152977172:+] 0.5680 133 0 -10.91 -0.1033 MIMAT0003895 mmu-miR-764-3p 15162 Hck ugucaaCGGUGA---UACCGGAGGa |||||| | ||||||| caauccGCCACUCUCAGGGCCUCCa 2 17 152 176 [mm9:2:152977037-152977061:+] 0.5964 155 7 -24.41 -0.7226 MIMAT0004823 mmu-miR-666-3p 15162 Hck ucguccgcuaGUGCGACGUCGg ||| ||||||| ccacaccacaCACACUGCAGCu 2 13 80 101 [mm9:2:152976965-152976986:+] 0.4302 152 7 -18.69 -0.2912 MIMAT0003739 mmu-miR-673-5p 15162 Hck gagguuccuGGUCUCGACACUc |:| |||||||| gaauucaauCUAUAGCUGUGAu 2 14 208 229 [mm9:2:152977093-152977114:+] 0.5658 153 7 -17.21 -1.1717 MIMAT0003898 mmu-miR-760 15162 Hck aggggUGUCUGGGUCUCGGc ||| : ||||||| uaaggACAUGAGCAGAGCCa 2 16 7 26 [mm9:2:152976892-152976911:+] 0.4547 147 7 -15.36 -0.3561 MIMAT0003741 mmu-miR-674* 15162 Hck aacaagacucuacccUCGACAc |||||| cugaauucaaucuauAGCUGUg 2 8 206 227 [mm9:2:152977091-152977112:+] 0.5658 120 6 -11.86 -0.1247 MIMAT0003504 mmu-miR-713 15162 Hck cgacacacGGAAGUCACGu || ||||||| cagaagccCCAUCAGUGCc 2 12 25 43 [mm9:2:152976910-152976928:+] 0.4414 147 7 -14.26 -0.1264 MIMAT0004237 mmu-miR-742 15162 Hck aaaugggucguaccaCCGAAAg |||||| gauaugaaugucaaaGGCUUUc 2 8 266 287 [mm9:2:152977151-152977172:+] 0.5680 120 6 -13.53 -0.2964 MIMAT0004841 mmu-miR-871 15162 Hck guACUGACCGUGAUUAGAC-UUAu ||||| :| | ||||| ||| ucUGACU-CUAGUCAUCUGCAAUc 2 22 134 156 [mm9:2:152977019-152977041:+] 0.6042 127 0 -10.27 -0.4457 MIMAT0004930 mmu-miR-466d-5p 15162 Hck guacauguacauGCGUGUGUGu | ||||||| cagacaccacacCACACACACu 2 11 74 95 [mm9:2:152976959-152976980:+] 0.4302 142 7 -15.35 -0.1743 MIMAT0005830 mmu-miR-466l 15162 Hck uuauACACACGUA-CAUAAAUau ||| | || ||||||| aaacUGUUAGAAUAGUAUUUAaa 3 19 238 260 [mm9:2:152977123-152977145:+] 0.5987 137 0 -4.65 -0.2921 MIMAT0005835 mmu-miR-1-2-as 15162 Hck accUUAC-AUUUCUUCAUACAu | || ||:| ||||| | gaaACUGUUAGAAUAGUAUUUa 2 19 237 258 [mm9:2:152977122-152977143:+] 0.5987 121 0 -5.60 -0.1572 MIMAT0005845 mmu-miR-466k 15162 Hck aguguacauguacaUGUGUGUGu |||||||| ucagacaccacaccACACACACu 2 10 73 95 [mm9:2:152976958-152976980:+] 0.4302 145 7 -16.02 -0.1727 MIMAT0009421 mmu-miR-669o 15162 Hck uguaUUUGU-ACGU-GUGUGU-UGAu |:||| || |||||| ||| ucucAGACACCACACCACACACACUg 2 20 71 96 [mm9:2:152976956-152976981:+] 0.4302 121 0 -17.61 -0.1567 MIMAT0011212 mmu-miR-2136 15162 Hck guGU-AGAGUCAGU--UGUGG-GUc || |||||| || ||||| || ccCACUCUCAGACACCACACCACAc 2 20 66 90 [mm9:2:152976951-152976975:+] 0.4302 129 0 -21.09 -0.1699 MIMAT0012771 mmu-miR-432 15162 Hck gaCGG-GUGACUAGAUGAGGUUCu ||| | || | ||||||| ccGCCACUCUCAGGGCCUCCAAGu 2 22 156 179 [mm9:2:152977041-152977064:+] 0.5964 148 7 -19.28 -0.3361 MIMAT0012774 mmu-miR-664 15162 Hck auccgaccccucauuUACUUAu |||||| auuuaaauaaaagauAUGAAUg 2 8 254 275 [mm9:2:152977139-152977160:+] 0.5987 120 6 -5.97 -0.1113 MIMAT0000126 mmu-miR-27b 15162 Hck cgucUUGAAUCGGUGACACUu ||: || : :|||||| auucAAUCUA-UAGCUGUGAu 2 18 210 229 [mm9:2:152977095-152977114:+] 0.5658 131 6 -9.46 -0.1314 MIMAT0000134 mmu-miR-124 15162 Hck ccguaaGUGGCGCACGGAAu ||:| ||||||| aagcccCAUC-AGUGCCUUg 2 15 28 46 [mm9:2:152976913-152976931:+] 0.4414 144 7 -17.33 -0.2001 MIMAT0000135 mmu-miR-125a-5p 15162 Hck aguguccaauuucccAGAGUCCCu |||||||| ucugcaauccgccacUCUCAGGGc 2 10 148 171 [mm9:2:152977033-152977056:+] 0.6042 145 7 -14.92 -0.3757 MIMAT0000136 mmu-miR-125b-5p 15162 Hck aguguucaaucccAGAGUCCCu |||||||| ugcaauccgccacUCUCAGGGc 2 10 150 171 [mm9:2:152977035-152977056:+] 0.6042 145 7 -15.32 -0.3698 MIMAT0000144 mmu-miR-132 15162 Hck gcugguaccgacaucUGACAAu |||||| gugauuuaaguggaaACUGUUa 2 8 225 246 [mm9:2:152977110-152977131:+] 0.5987 120 6 -13.92 -0.1536 MIMAT0000156 mmu-miR-144 15162 Hck ucauguAG-UAGAUAU-GACAu || ||||||| |||| cugaauUCAAUCUAUAGCUGUg 2 15 206 227 [mm9:2:152977091-152977112:+] 0.5658 125 0 -13.24 -1.1033 MIMAT0000159 mmu-miR-149 15162 Hck cccUCACUUCUGUGC----CUCGGUCu ||| |:||||:| ||||||| agcAGUAAGGACAUGAGCAGAGCCAGa 2 21 2 28 [mm9:2:152976887-152976913:+] 0.5620 163 7 -27.54 -0.6253 MIMAT0000210 mmu-miR-181a 15162 Hck ugAGUGGCUGUCGCAACUUACAa | | : | || ||||||| uuUAAAUAAAAGAUAUGAAUGUc 2 22 255 277 [mm9:2:152977140-152977162:+] 0.5987 145 7 -8.91 -1.2367 MIMAT0000224 mmu-miR-194 15162 Hck agGUGUACCUCAACGACAAUgu :| :|||| |||||| uuUAAGUGGA--AACUGUUAga 3 21 229 248 [mm9:2:152977114-152977133:+] 0.5987 125 0 -12.01 -0.3205 MIMAT0000233 mmu-miR-200b 15162 Hck aguagUAAUGGUC-CGUCAUAAu | |:::|| :|||||| uggaaACUGUUAGAAUAGUAUUu 2 18 235 257 [mm9:2:152977120-152977142:+] 0.5987 132 6 -9.05 -0.1443 MIMAT0000537 mmu-miR-27a 15162 Hck cgccUUGAAUCGGUGACACUu ||: || : :|||||| auucAAUCUA-UAGCUGUGAu 2 18 210 229 [mm9:2:152977095-152977114:+] 0.5658 131 6 -10.14 -0.1314 MIMAT0000609 mmu-miR-351 15162 Hck guccGA-GUUUCCCG--AGGAGUCCCu || ||| || :||||||| ucauCUGCAAUCCGCCACUCUCAGGGc 2 21 145 171 [mm9:2:152977030-152977056:+] 0.6042 142 7 -18.51 -0.3727 MIMAT0000657 mmu-miR-200c 15162 Hck agguaguaaugggccGUCAUAAu :|||||| uggaaacuguuagaaUAGUAUUu 2 9 235 257 [mm9:2:152977120-152977142:+] 0.5987 124 6 -7.32 -0.1443 MIMAT0000659 mmu-miR-212 15162 Hck acCGGCACUG-----ACCUCUGACAAu ||:||||: |||| |||||| uaGCUGUGAUUUAAGUGGAAACUGUUa 2 21 220 246 [mm9:2:152977105-152977131:+] 0.5658 135 6 -25.14 -0.1254 MIMAT0000673 mmu-miR-181b 15162 Hck uggguggcUGUCGUUACUUACAa | || |||||||| uuuaaauaAAAGAUAUGAAUGUc 2 16 255 277 [mm9:2:152977140-152977162:+] 0.5987 151 7 -9.52 -1.2367 MIMAT0000674 mmu-miR-181c 15162 Hck ugAGUGGCUGUCCA-ACUUACAa | | : | || | ||||||| uuUAAAUAAAAGAUAUGAAUGUc 2 21 255 277 [mm9:2:152977140-152977162:+] 0.5987 147 7 -8.65 -1.2367 MIMAT0000748 mmu-miR-383 15162 Hck ucGGUGUCAGUGGAAGACU-AGa :|||| || |:|||||| || cuUCACAAUCUCUUUCUGACUCu 2 21 120 142 [mm9:2:152977005-152977027:+] 0.5481 140 0 -21.28 -0.5465 MIMAT0001537 mmu-miR-429 15162 Hck ugccgUAAUGGUC-UGUCAUAAu | |:::|| |:|||||| uggaaACUGUUAGAAUAGUAUUu 2 18 235 257 [mm9:2:152977120-152977142:+] 0.5987 140 6 -15.55 -0.1443 MIMAT0003168 mmu-miR-543 15162 Hck uucuucacguggcGCUUACAaa :|||||| uaaauaaaagauaUGAAUGUca 3 10 257 278 [mm9:2:152977142-152977163:+] 0.5987 121 0 -6.91 -0.1301 MIMAT0004324 mmu-miR-181d 15162 Hck uggguggcUGUUGU-UACUUACAa | || | |||||||| auuuaaauAAAAGAUAUGAAUGUc 2 16 254 277 [mm9:2:152977139-152977162:+] 0.5987 150 7 -9.48 -1.2367

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G006191 Hck Mus musculus 15162

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Hck mmu-miR-20bstar beg:87 end:100 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |||||||||| &5' -----------CACACTGCAG- 3' Hck mmu-miR-666-3p beg:87 end:102 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& ||| |||||||. &5' ----------CACACTGCAGCT 3' Hck mmu-miR-764-3p beg:157 end:176 pic:3' TGTCAACGGTGATA---CCGGAGGA 5'& |||||| ||||||| &5' ------GCCACTCTCAGGGCCTCC- 3' Hck mmu-miR-124 beg:27 end:47 pic:3' CCGTAAGTGGCGCACGGAAT 5'& || ||.| |||||||. &5' -GCCC-CATCA-GTGCCTTG 3' Hck mcmv-miR-M87-1 beg:91 end:114 pic:3' CGACGGCGACGGCT-GCCGACGGA 5'& |||| ||||..|| .|| || &5' -CTGCAGCTGTTGAGTGGGTG--- 3' Hck mcmv-miR-m88-1 beg:114 end:138 pic:3' TCTGGGGCTG-TAGCTGAAGAC 5'& .|||..| || ||| .||||| &5' GGACTTC-ACAATCTCTTTCTG 3' Hck mmu-miR-1188 beg:67 end:88 pic:3' AGGACCGGGT-TGGAGTGTGGT 5'& || |.|| || ||||||| &5' --CT--CTCAGACACCACACCA 3' Hck mmu-miR-149 beg:7 end:29 pic:3' CCCTCACTTCTGTGC----CTCGGTCT 5'& |.||||.| |||||||| &5' -------AGGACATGAGCAGAGCCAGA 3' Hck mmu-miR-187 beg:256 end:273 pic:3' GGCCGACGTTGTGTTCTGTGCT 5'& ||.| ||||.|.|| &5' --------AATAAAAGATATGA 3' Hck mmu-miR-1929 beg:182 end:203 pic:3' GAGAC-GAGATATTTCAGGATCTT 5'& || ||| || | |||.||| &5' ---TGTCTC-ATTT-G-CCTGGAA 3' Hck mmu-miR-1940 beg:156 end:177 pic:3' TTGACGAGGTGGAAGAGTCA-GGAGGTA 5'& |||| |||||| |||||| &5' -------CCAC--TCTCAGGGCCTCCA- 3' Hck mmu-miR-1968 beg:82 end:104 pic:3' TCAGGTG-GTAGGAATTGTCGACGT 5'& |||| || || .||||||. &5' ---CCACACACACT--GCAGCTGT- 3' Hck mmu-miR-212 beg:232 end:247 pic:3' ACCGGCACTGACCTCTGACAAT 5'& |||| ||||||| &5' ----------TGGAAACTGTTA 3' Hck mmu-miR-2135 beg:152 end:175 pic:3' CAAAGCCGG----GGTTCTGGAGA 5'& || ||| .||.|.|||| &5' ---TCCGCCACTCTCAGGGCCTC- 3' Hck mmu-miR-2136 beg:65 end:88 pic:3' GTGTAGAGTCAGTTGTG-GGTC 5'& ||| |||||| || ||| ||| &5' CAC-TCTCAGACACCACACCA- 3' Hck mmu-miR-24 beg:50 end:68 pic:3' GACAAGGACGACTTGACTCGGT 5'& || || .|||.||| &5' -----CCAACTT-GCTGGGCC- 3' Hck mmu-miR-27a beg:219 end:229 pic:3' CGCCTTGAATCGGTGACACTT 5'& .|||||| &5' -------------GCTGTGA- 3' Hck mmu-miR-296-5p beg:93 end:116 pic:3' TGTCC-TAACTC-CCC-CCCGGGA 5'& .||| .||||| ||| ||| &5' GCAGCTGTTGAGTGGGTGGG---- 3' Hck mmu-miR-30estar beg:182 end:203 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||| |||..| |||.|| &5' --TGTCT-CATTTGCCTGGAA- 3' Hck mmu-miR-3473 beg:57 end:75 pic:3' CCGACTCGGTAGAGAGGT 5'& ||||.||| ||||| &5' -GCTGGGCCCACTCTC-- 3' Hck mmu-miR-3474 beg:150 end:170 pic:3' CTTAGGTGCAGAGGAGGGTCCC 5'& |||||.| |||.||||| &5' -AATCCGCCA---CTCTCAGGG 3' Hck mmu-miR-432 beg:157 end:179 pic:3' GACGG-GTGACTAGATGAGGTTCT 5'& ||| | || ||||||| &5' --GCCACTCTCAGGGCCTCCAAG- 3' Hck mmu-miR-532-3p beg:93 end:119 pic:3' ACGTTCGG-AAC---CCACACCCTCC 5'& || |||. ||| || |||||||| &5' -GC-AGCTGTTGAGTGG-GTGGGAGG 3' Hck mmu-miR-540-3p beg:120 end:141 pic:3' GGTCCTAGCTGGAGACTGGA 5'& || ||| ..||||||. &5' -CACAATCTCTTTCTGACT- 3' Hck mmu-miR-541 beg:115 end:134 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& |||. ||| ||||.||| &5' -----GACT----TCACAATCTCTT 3' Hck mmu-miR-669n beg:74 end:94 pic:3' TGT-GTGTAGGTGTGTGTTTA 5'& ||| |||| ||||||||| &5' ACACCACA-CCACACACA--- 3' Hck mmu-miR-673-5p beg:208 end:229 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& |.||| |.| |||||||| &5' -TTCAAT--CTATAGCTGTGA- 3' Hck mmu-miR-713 beg:27 end:43 pic:3' CGACACACGGA--AGTCACGT 5'& ||| ||||||| &5' -------GCCCCATCAGTGC- 3' Hck mmu-miR-758 beg:107 end:128 pic:3' ATCACCTGGTCC---AGTGTTT 5'& .||||. ||| |||||| &5' -GGTGGG--AGGACTTCACAA- 3' Hck mmu-miR-760 beg:152 end:173 pic:3' AGG-GGTGTCTGGGTCTCGGC 5'& ||| |||| |.|||.||| &5' TCCGCCACT--CTCAGGGCC- 3' Hck mmu-miR-877star beg:102 end:121 pic:3' ACCCTCCTC-CCTCTTCTCCTGT 5'& ||| ||. .|||||| &5' ------GAGTGGGTGGGAGGAC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hck RAID00296485 mmu-miR-200b-3p miRNA MIMAT0000233 Hck mRNA 15162 Prediction 0.1828 Hck RAID00307679 mmu-miR-181a-5p miRNA MIMAT0000210 Hck mRNA 15162 Prediction 0.1828 Hck RAID00356187 mmu-miR-149-5p miRNA MIMAT0000159 Hck mRNA 15162 Prediction 0.1828 Hck RAID00421674 mmu-miR-351-5p miRNA MIMAT0000609 Hck mRNA 15162 Prediction 0.1828 Hck RAID00459650 mmu-miR-1892 miRNA MIMAT0007871 Hck mRNA 15162 Prediction 0.1828 Hck RAID00522458 mmu-miR-200c-3p miRNA MIMAT0000657 Hck mRNA 15162 Prediction 0.1828 Hck RAID00610288 mmu-miR-383-5p miRNA MIMAT0000748 Hck mRNA 15162 Prediction 0.1828 Hck RAID00613689 mmu-miR-450a-2-3p miRNA MIMAT0004789 Hck mRNA 15162 Prediction 0.1828 Hck RAID00740584 mmu-miR-181d-5p miRNA MIMAT0004324 Hck mRNA 15162 Prediction 0.1828 Hck RAID00750757 mmu-miR-6985-3p miRNA MIMAT0027873 Hck mRNA 15162 Prediction 0.1828 Hck RAID00797097 mmu-miR-543-3p miRNA MIMAT0003168 Hck mRNA 15162 Prediction 0.1828 Hck RAID00958113 mmu-miR-429-3p miRNA MIMAT0001537 Hck mRNA 15162 Prediction 0.1828 Hck RAID01458136 mmu-miR-212-3p miRNA MIMAT0000659 Hck mRNA 15162 Prediction 0.1828 Hck RAID01523280 mmu-miR-27a-3p miRNA MIMAT0000537 Hck mRNA 15162 Prediction 0.1828 Hck RAID01748885 mmu-miR-125a-5p miRNA MIMAT0000135 Hck mRNA 15162 Prediction 0.1828 Hck RAID02164110 mmu-miR-6388 miRNA MIMAT0025135 Hck mRNA 15162 Prediction 0.1828 Hck RAID02230224 mmu-miR-181b-5p miRNA MIMAT0000673 Hck mRNA 15162 Prediction 0.1828 Hck RAID02359884 mmu-miR-7231-5p miRNA MIMAT0028430 Hck mRNA 15162 Prediction 0.1828 Hck RAID02438736 mmu-miR-673-5p miRNA MIMAT0003739 Hck mRNA 15162 Prediction 0.1828 Hck RAID02569319 mmu-miR-194-5p miRNA MIMAT0000224 Hck mRNA 15162 Prediction 0.1828 Hck RAID02904229 mmu-miR-132-3p miRNA MIMAT0000144 Hck mRNA 15162 Prediction 0.1828 Hck RAID02927243 mmu-miR-6996-3p miRNA MIMAT0027895 Hck mRNA 15162 Prediction 0.1828 Hck RAID03162609 mmu-miR-144-3p miRNA MIMAT0000156 Hck mRNA 15162 Prediction 0.1828 Hck RAID03227137 mmu-miR-6958-3p miRNA MIMAT0027817 Hck mRNA 15162 Prediction 0.1828 Hck RAID03228869 mmu-miR-7031-5p miRNA MIMAT0027966 Hck mRNA 15162 Prediction 0.1828 Hck RAID03250827 mmu-miR-124-3p miRNA MIMAT0000134 Hck mRNA 15162 Prediction 0.1828 Hck RAID03346612 mmu-miR-125b-5p miRNA MIMAT0000136 Hck mRNA 15162 Prediction 0.1828 Hck RAID03753673 mmu-miR-764-3p miRNA MIMAT0003895 Hck mRNA 15162 Prediction 0.1828 Hck RAID03815449 mmu-miR-181c-5p miRNA MIMAT0000674 Hck mRNA 15162 Prediction 0.1828 Hck RAID03848536 mmu-miR-7062-5p miRNA MIMAT0028028 Hck mRNA 15162 Prediction 0.1828 Hck RAID03885060 mmu-miR-770-3p miRNA MIMAT0003891 Hck mRNA 15162 Prediction 0.1828 Hck RAID03998737 mmu-miR-27b-3p miRNA MIMAT0000126 Hck mRNA 15162 Prediction 0.1828