DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000137 mmu-miR-126-5p 71673 Rnf215 gcgCAUGGUUUU--CAUUAUUAc ||| :||: |||||:| uggGUAGGGAAGUUUUAAUAGUa 2 19 616 638 [mm9:11:4041128-4041150:+] 0.5467 129 0 -8.35 -0.1235 MIMAT0004538 mmu-miR-10b* 71673 Rnf215 auaaggggAUCU-UAGCUUAGAc || | || |||||| uaguaaaaUAAACAUGGAAUCUa 2 15 634 656 [mm9:11:4041146-4041168:+] 0.5467 121 6 -6.27 -0.3533 MIMAT0000217 mmu-miR-188-5p 71673 Rnf215 gggAGGUGGUACGUUCCC-UAc | ||:| |||||||| || uggUGCAUC-UGCAAGGGCAUc 2 19 559 579 [mm9:11:4041071-4041091:+] 0.5742 128 0 -19.61 -1.0541 MIMAT0004629 mmu-miR-22* 71673 Rnf215 auuucgaacggugaCUUCUUGa ||||||| ucccacaacucuggGAAGAACa 2 9 240 261 [mm9:11:4040752-4040773:+] 0.5613 140 7 -11.80 -0.3379 MIMAT0000549 mmu-miR-322* 71673 Rnf215 cacaACGUCGCGAAGU-ACAAa | |:| || ||| |||| gcacUCCGGAGCGUCAGUGUUg 2 18 285 306 [mm9:11:4040797-4040818:+] 0.5613 121 0 -11.06 -0.3921 MIMAT0004649 mmu-miR-339-3p 71673 Rnf215 gccgAGACAGCGG-CUCCG-CGAGu |||||| :| |||| |||| ugugUCUGUCCUCAUAGGCGGCUCc 2 20 218 242 [mm9:11:4040730-4040754:+] 0.5613 130 0 -21.79 -0.2084 MIMAT0000650 mmu-miR-17* 71673 Rnf215 gauGUUCACGGGAGUGA-CGUCa || | | || |||| |||| ggcCAUGGGACC-CACUGGCAGg 2 20 352 373 [mm9:11:4040864-4040885:+] 0.5613 121 0 -20.49 -0.3384 MIMAT0004660 mmu-miR-19a* 71673 Rnf215 caucacGUUGAUACGUUUUGau ||| | |||||| aaaaaaCAAAAACACAAAACaa 3 17 589 610 [mm9:11:4041101-4041122:+] 0.5467 128 0 -6.31 -0.1461 MIMAT0004661 mmu-miR-28* 71673 Rnf215 aggucgucgagUGUUAGAUCAc || ||||||| aggccuuagaaACCAUCUAGUg 2 12 476 497 [mm9:11:4040988-4041009:+] 0.6018 147 7 -19.28 -0.2028 MIMAT0004663 mmu-miR-200c* 71673 Rnf215 gguuugugacgacccAUUCUGc |||||| uuaacauaaaucuguUAAGACa 2 8 659 680 [mm9:11:4041171-4041192:+] 0.5467 120 6 -10.82 -0.1340 MIMAT0004666 mmu-miR-33* 71673 Rnf215 cacuacgugacaccUUUGUAac |||||| uuuaauaguaaaauAAACAUgg 3 9 629 650 [mm9:11:4041141-4041162:+] 0.5467 120 0 -4.47 -0.2008 MIMAT0001637 mmu-miR-452 71673 Rnf215 cagagucaaAGGAGACGUUUGu |:|||||||||| uaagagcccUUCUCUGCAAACc 2 14 187 208 [mm9:11:4040699-4040720:+] 0.5837 161 7 -17.67 -0.2520 MIMAT0003127 mmu-miR-484 71673 Rnf215 uagcccuccccUGACUCGGACu | |||||||| aaugacuuuaaAGUGAGCCUGc 2 12 402 423 [mm9:11:4040914-4040935:+] 0.4446 147 7 -14.48 -0.2981 MIMAT0005460 mmu-miR-1224 71673 Rnf215 gagGUGGA-GGGGUCAGGAGUg :|::| : :| ||||||| gggUAUUUGUGUCUGUCCUCAu 2 19 211 232 [mm9:11:4040723-4040744:+] 0.5725 145 7 -17.40 -0.4187 MIMAT0004822 mmu-miR-770-5p 71673 Rnf215 gcaCCGG-GUCU---GUGCACCACGa |||| |||| :|:||||||| ugaGGCCACAGAAUCUAUGUGGUGCa 2 20 540 565 [mm9:11:4041052-4041077:+] 0.5742 161 7 -30.25 -0.7779 MIMAT0004188 mmu-miR-802 71673 Rnf215 uuCCUACUU-AGAAACAAUGACu || ||:: | |||||||| uuGGUUGGGCUAAAUGUUACUGa 2 21 507 529 [mm9:11:4041019-4041041:+] 0.6018 151 7 -17.04 -1.0657 MIMAT0003896 mmu-miR-763 71673 Rnf215 cgguGACCA-AGAAGGGUCGACc ||| | || :||||||| ugacCUGCUGCCUGUCCAGCUGa 2 19 428 450 [mm9:11:4040940-4040962:+] 0.5232 153 7 -23.02 -0.3245 MIMAT0003898 mmu-miR-760 71673 Rnf215 agGGGU--GUC-UGGGUCUCGGc :||| | | || ||||||| gcUCCAGGCUGAACACAGAGCCg 2 19 139 161 [mm9:11:4040651-4040673:+] 0.5187 148 7 -27.49 -0.1654 MIMAT0003740 mmu-miR-674 71673 Rnf215 auGUGGUGAGG-GUAG-AGUCACg || |||||| | | |||||| ccCAGCACUCCGGAGCGUCAGUGu 2 21 281 304 [mm9:11:4040793-4040816:+] 0.5613 131 6 -23.99 -0.2348 MIMAT0003462 mmu-miR-684 71673 Rnf215 aacugAACUUCCCUUUUga || || |||||| caucaUUAAAAGGAAAAaa 3 15 576 594 [mm9:11:4041088-4041106:+] 0.5467 134 0 -5.34 -0.1587 MIMAT0003466 mmu-miR-687 71673 Rnf215 agUAACGACGUAAGGUCCUAUc | ||:| | |||||||| uaAAUGUUACUGACCAGGAUAc 2 21 517 538 [mm9:11:4041029-4041050:+] 0.6018 156 7 -16.49 -0.3158 MIMAT0004189 mmu-miR-693-3p 71673 Rnf215 aauGUCGGUGUAGACUUUC-GACg | ||| || : ||||| ||| ---CUGCCCCAGUGGAAAGUCUGc 2 21 1 21 [mm9:11:4040513-4040533:+] 0.5366 128 0 -17.84 -0.5363 MIMAT0003476 mmu-miR-669b 71673 Rnf215 uguacgUGUACGUGUGUUUUGa ||| ||||||||| gaaaaaACAAAAACACAAAACa 2 17 588 609 [mm9:11:4041100-4041121:+] 0.5467 156 7 -12.92 -1.1227 MIMAT0003485 mmu-miR-455* 71673 Rnf215 gcUACAU-CAGGUUUCCGU-GUAu :|| | | |||:|||| ||| ugGUGCAUCUGCAAGGGCAUCAUu 2 21 559 582 [mm9:11:4041071-4041094:+] 0.5742 123 0 -18.49 -0.6750 MIMAT0003495 mmu-miR-705 71673 Rnf215 acGGGUG-GGGUGGAGGGUGg |:||: |: ||||||| ucCUCAUAGGCGGCUCCCACa 2 19 226 246 [mm9:11:4040738-4040758:+] 0.5613 145 7 -23.64 -0.2021 MIMAT0003507 mmu-miR-500 71673 Rnf215 acUUGGGAACGGGUCCACGUAa ||:|: ||: ||||||| agAAUCUAUGU---GGUGCAUc 2 21 549 567 [mm9:11:4041061-4041079:+] 0.5742 148 7 -17.79 -0.7694 MIMAT0003508 mmu-miR-501-5p 71673 Rnf215 aaagugggucccugUUUCCUaa |||||| caagggcaucauuaAAAGGAaa 3 9 570 591 [mm9:11:4041082-4041103:+] 0.5467 120 0 -10.30 -0.2395 MIMAT0003509 mmu-miR-501-3p 71673 Rnf215 guUUAGGAACGGGCCCACGUAa ||||: ||: ||||||| agAAUCUAUGU---GGUGCAUc 2 21 549 567 [mm9:11:4041061-4041079:+] 0.5742 152 7 -15.30 -0.7694 MIMAT0003511 mmu-miR-450b-5p 71673 Rnf215 auAAGUCCUUGUA--UGACGUUUu || || : | | ||||||| caUUAAGAGCCCUUCUCUGCAAAc 2 21 184 207 [mm9:11:4040696-4040719:+] 0.5837 143 7 -10.15 -0.3910 MIMAT0004838 mmu-miR-742* 71673 Rnf215 acuaaUCGUUGGUAC-ACUCAu |||: | :|| ||||| uccggAGCGUCAGUGUUGAGUu 2 17 289 310 [mm9:11:4040801-4040822:+] 0.5613 120 0 -13.84 -0.5293 MIMAT0004849 mmu-miR-883a-3p 71673 Rnf215 uaUGACUCUCGACAACGUCAAu | ||: | | ||||||| ccAGUGGAAAGU-CUGCAGUUc 2 21 6 26 [mm9:11:4040518-4040538:+] 0.5366 142 7 -10.36 -0.3266 MIMAT0004851 mmu-miR-883b-3p 71673 Rnf215 uauGACUCUCUACA-ACGUCAAu | | |: | || ||||||| cccCAGUGGAAAGUCUGCAGUUc 2 20 4 26 [mm9:11:4040516-4040538:+] 0.5366 150 7 -9.99 -0.3266 MIMAT0004863 mmu-miR-220 71673 Rnf215 uucacagacugugACACCACc ||||||| gccacagaaucuaUGUGGUGc 2 9 544 564 [mm9:11:4041056-4041076:+] 0.5742 140 7 -12.25 -0.3238 MIMAT0004898 mmu-miR-654-3p 71673 Rnf215 uuccacuaccagucgUCUGUAu |||||| aacauaaaucuguuaAGACAUa 2 8 661 682 [mm9:11:4041173-4041194:+] 0.5467 120 6 -9.05 -0.3835 MIMAT0004861 mmu-miR-877 71673 Rnf215 ggGACGCGGUAGAGGAG-AUg :||:|:| | ||||| || auUUGUGUC-UGUCCUCAUAg 2 19 215 234 [mm9:11:4040727-4040746:+] 0.5613 120 0 -18.30 -0.1815 MIMAT0005833 mmu-miR-669d 71673 Rnf215 ugUAUAUGUACGUGUGUGUUca | | ||| | |||||| gaAAAAACA--AAAACACAAaa 3 21 588 607 [mm9:11:4041100-4041119:+] 0.5467 125 0 -7.38 -0.1539 MIMAT0005859 mmu-miR-1198 71673 Rnf215 gguucggucgGUCCUUGUGUau || |||||| aaggaaaaaaCAAAAACACAaa 3 13 585 606 [mm9:11:4041097-4041118:+] 0.5467 124 0 -8.35 -0.1518 MIMAT0007872 mmu-miR-1906 71673 Rnf215 ucgGGACGGAGUCC--GACGACGu |||||: |: | ||||||| gagCCUGCUCCGUGACCUGCUGCc 2 20 416 439 [mm9:11:4040928-4040951:+] 0.5232 158 7 -24.21 -0.1020 MIMAT0009402 mmu-miR-1938 71673 Rnf215 cugGCUUGAUGUUCAGGGUGGc | || | |:|||||||| gggCAAAGGAAAGGUCCCACCa 2 20 89 110 [mm9:11:4040601-4040622:+] 0.5187 159 7 -23.78 -0.1818 MIMAT0009403 mmu-miR-1939 71673 Rnf215 cacgUAACCGUCCCUUAGcu || || |||||| uaaaAUAAACAUGGAAUCua 3 17 637 656 [mm9:11:4041149-4041168:+] 0.5467 128 0 -8.13 -0.3103 MIMAT0009425 mmu-miR-1954 71673 Rnf215 uugucccagagUGAGACGUCa | ||||||| ccccaguggaaAGUCUGCAGu 2 11 4 24 [mm9:11:4040516-4040536:+] 0.5366 142 7 -19.22 -0.4339 MIMAT0009427 mmu-miR-669n 71673 Rnf215 ugUGUGUAGGUGUGUGUUUa | ||| | ||||||| aaAAACA--AAAACACAAAa 2 19 590 607 [mm9:11:4041102-4041119:+] 0.5467 143 7 -8.47 -1.2471 MIMAT0009455 mmu-miR-1983 71673 Rnf215 ucuuuuGUACGAGGUCC-ACUc || |||||||| ||| gccuccCA-GCUCCAGGCUGAa 2 16 131 151 [mm9:11:4040643-4040663:+] 0.5187 125 0 -19.01 -0.1283 MIMAT0011287 mmu-miR-2183 71673 Rnf215 uccUCCAGUC--CCCAAGUu ||| ::| ||||||| uccAGGCUGGCUGGGUUCAg 2 16 456 475 [mm9:11:4040968-4040987:+] 0.6018 146 7 -17.07 -0.1258 MIMAT0000147 mmu-miR-135a 71673 Rnf215 agUGUAUCCUUAUUUUUCGGUAu ||||| |: ||| ||| uaACAUAAAUCUGUUAAGACAUa 2 22 660 682 [mm9:11:4041172-4041194:+] 0.5467 121 0 -8.97 -0.1095 MIMAT0000153 mmu-miR-141 71673 Rnf215 gguagaaaugguCUGUCACAAu | ||||||| gcacuccggagcGUCAGUGUUg 2 11 285 306 [mm9:11:4040797-4040818:+] 0.5613 142 7 -17.39 -0.3352 MIMAT0000155 mmu-miR-142-3p 71673 Rnf215 agguauuucaUCCUUUGUGAUGu || ||||||| gacccuucccAGCCUACACUACa 2 14 33 55 [mm9:11:4040545-4040567:+] 0.5352 141 7 -13.41 -0.2107 MIMAT0000162 mmu-miR-152 71673 Rnf215 ggUUCAAGACAGUACGU-GACu || | ||| :|||| ||| agAAUCUAUGUGGUGCAUCUGc 2 20 549 570 [mm9:11:4041061-4041082:+] 0.5742 123 0 -13.13 -0.3988 MIMAT0000209 mmu-miR-129-5p 71673 Rnf215 cguucgggucuggcGUUUUUc |||||| uuaaaaggaaaaaaCAAAAAc 2 8 581 601 [mm9:11:4041093-4041113:+] 0.5467 120 6 -3.07 -0.1163 MIMAT0000224 mmu-miR-194 71673 Rnf215 aggUGUACCUCAACGACAAUgu |||| | | |||||| uuaACAU--AAAU-CUGUUAag 3 20 659 677 [mm9:11:4041171-4041189:+] 0.5467 122 0 -8.12 -0.1144 MIMAT0000369 mmu-miR-292-5p 71673 Rnf215 guuuUCUCGGGGGUCA-AACUCa :||| | :|||| ||||| cuccGGAG-CGUCAGUGUUGAGu 2 19 288 309 [mm9:11:4040800-4040821:+] 0.5613 124 0 -18.86 -0.4731 MIMAT0000516 mmu-miR-148a 71673 Rnf215 ugUUUCAAGACAUCACGU-GACu :|| | |||:||||| ||| caGAAUCUAUGUGGUGCAUCUGc 2 21 548 570 [mm9:11:4041060-4041082:+] 0.5742 132 0 -18.21 -0.3988 MIMAT0000519 mmu-miR-200a 71673 Rnf215 uguagcaaugguCUGUCACAAu | ||||||| gcacuccggagcGUCAGUGUUg 2 11 285 306 [mm9:11:4040797-4040818:+] 0.5613 142 7 -16.81 -0.3352 MIMAT0000533 mmu-miR-26a 71673 Rnf215 ucgGAUAGGACCUAAUGAACUu ||: || ||| ||||||| uuaCUGACCAGGA-UACUUGAg 2 20 523 543 [mm9:11:4041035-4041055:+] 0.6018 161 7 -19.52 -0.2188 MIMAT0000534 mmu-miR-26b 71673 Rnf215 ugGAUAGGACUUAAUGAACUu ||: || |:| ||||||| uaCUGACCAGGA-UACUUGAg 2 20 524 543 [mm9:11:4041036-4041055:+] 0.6018 157 7 -16.69 -0.2188 MIMAT0004642 mmu-miR-330 71673 Rnf215 cggauUCUGUGUCCGGGUC-UCu ||| |:| ||||| || aacacAGAGCCGGACCCAGCAGg 2 18 150 172 [mm9:11:4040662-4040684:+] 0.5512 121 0 -18.59 -0.1061 MIMAT0000580 mmu-miR-148b 71673 Rnf215 ugUUUCAAGACACUACGU-GACu :|| | ||||:|||| ||| caGAAUCUAUGUGGUGCAUCUGc 2 21 548 570 [mm9:11:4041060-4041082:+] 0.5742 132 0 -18.57 -0.3988 MIMAT0000612 mmu-miR-135b 71673 Rnf215 agUGUAUCCUUACUUUUCGGUAu ||||| || ||| ||| uaACAUAAAUCUGUUAAGACAUa 2 22 660 682 [mm9:11:4041172-4041194:+] 0.5467 125 0 -10.60 -0.1095 MIMAT0000661 mmu-miR-214 71673 Rnf215 ugaCGGAC-AGACAC-GGACGACa ||||| || ||| ||||||| ugaGCCUGCUCCGUGACCUGCUGc 2 20 415 438 [mm9:11:4040927-4040950:+] 0.5232 169 7 -28.48 -0.1850 MIMAT0000711 mmu-miR-365 71673 Rnf215 uauuCCUAAAAAUCCCCGUAau | || | | |||||| ugguGCAUCUGCAAGGGCAUca 3 19 559 580 [mm9:11:4041071-4041092:+] 0.5742 130 0 -11.20 -0.2609 MIMAT0001420 mmu-miR-433 71673 Rnf215 ugugGCUCCUCGGGUAG-UACUa | |||: |: ||| |||| caggCCAGGGCCUGAUCAAUGAc 2 19 385 407 [mm9:11:4040897-4040919:+] 0.5030 122 0 -18.55 -0.3131 MIMAT0001546 mmu-miR-450a-5p 71673 Rnf215 uaUAAUCCUUGUG--UAG-CGUUUu |||| ||:| | || ||||| ucAUUAAGAGCCCUUCUCUGCAAAc 2 21 183 207 [mm9:11:4040695-4040719:+] 0.5837 123 0 -9.28 -0.4042 MIMAT0003183 mmu-miR-376c 71673 Rnf215 ugcacuuuaaaggAGAUACAa ||||||| ugaggccacagaaUCUAUGUg 2 9 540 560 [mm9:11:4041052-4041072:+] 0.6018 140 7 -9.64 -0.3042 MIMAT0003730 mmu-miR-592 71673 Rnf215 uguaguagcguauaacUGUGUUa |||||| aaaggaaaaaacaaaaACACAAa 2 8 584 606 [mm9:11:4041096-4041118:+] 0.5467 120 6 -5.10 -0.2046 MIMAT0003893 mmu-miR-761 71673 Rnf215 acaCAGUCAAAGUG--GGACGACg | | | | |:: ||||||| ugaGCCUGCUCCGUGACCUGCUGc 2 20 415 438 [mm9:11:4040927-4040950:+] 0.5232 142 7 -19.93 -0.1850

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G067738 Rnf215 Mus musculus 71673

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf215 mmu-miR-669b beg:591 end:609 pic:3' TGTACGTGTACGTGTGTTTTGA 5'& ||| ||||||||| &5' ------ACAAAAACACAAAAC- 3' Rnf215 mmu-miR-1186 beg:272 end:291 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||| ||||||||| &5' ----CCTGTCC--CCAGCACTC 3' Rnf215 mmu-miR-370 beg:155 end:174 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& .||.| |||||||||| &5' GCCGGA------CCCAGCAGGC 3' Rnf215 mmu-miR-687 beg:519 end:538 pic:3' AGTAACGACGTAAGGTCCTATC 5'& .|| ||| |||||||| &5' --GTTACTGA---CCAGGATA- 3' Rnf215 mmu-miR-141 beg:287 end:307 pic:3' GGTAGAAATGGTCT----GTCACAAT 5'& ||.|| |||||||. &5' ---------CCGGAGCGTCAGTGTTG 3' Rnf215 mmu-miR-200a beg:287 end:307 pic:3' TGTAGCAATGGTCT----GTCACAAT 5'& ||.|| |||||||. &5' ---------CCGGAGCGTCAGTGTTG 3' Rnf215 mmu-miR-1982star beg:125 end:140 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||. |||||||. &5' -------AGGG-CCTCCCAG 3' Rnf215 mmu-miR-22star beg:251 end:261 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& ||||||| &5' --------------GAAGAAC- 3' Rnf215 mmu-miR-540-5p beg:24 end:40 pic:3' TGTCTCAGTCTCCCA--CTGGGAAC 5'& ||| ||||||| &5' -----------GGGACGGACCCTT- 3' Rnf215 mmu-miR-484 beg:412 end:423 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||||||| &5' -------------TGAGCCTG- 3' Rnf215 mmu-miR-2183 beg:456 end:476 pic:3' TCCT-CCAGTCCCCAAGTT 5'& ||| || | |||||||. &5' AGGCTGG-CT-GGGTTCAG 3' Rnf215 mmu-miR-1193 beg:424 end:434 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||||||. &5' -------------GTGACCTG 3' Rnf215 mmu-miR-770-5p beg:546 end:565 pic:3' GCACCGGGTCT---GTGCACCACGA 5'& |||| .|.||||||| &5' -------CAGAATCTATGTGGTGC- 3' Rnf215 mcmv-miR-M23-1-3p beg:355 end:375 pic:3' CCGGAGCCC-GGCTG--CGTCCTC 5'& .||| || || |||||| &5' -----TGGGACCCACTGGCAGGA- 3' Rnf215 mcmv-miR-M23-2 beg:263 end:285 pic:3' GGCGAACTGGCTC------CGGGGGTA 5'& |.|| |.||||| &5' ------GGCCATTACACCTGTCCCCA- 3' Rnf215 mmu-miR-101a beg:487 end:503 pic:3' AAGTCAATAGTGTCATGACAT 5'& ||| .|||.||||| &5' -------ATC-TAGTGCTGTA 3' Rnf215 mmu-miR-101b beg:487 end:503 pic:3' AAGTCGATAGTGTCATGACAT 5'& ||| .|||.||||| &5' -------ATC-TAGTGCTGTA 3' Rnf215 mmu-miR-124star beg:135 end:155 pic:3' TAGTTCCAGG--CGACACTTGTGC 5'& | || ||| || ||||||| &5' --CCAGCTCCAGGC--TGAACAC- 3' Rnf215 mmu-miR-143 beg:290 end:314 pic:3' CTCGATGTCACGAAGTAGAGT 5'& |||| |||||.| .|.|.| &5' GAGCGTCAGTGTTGAGTTTTA 3' Rnf215 mmu-miR-144 beg:486 end:503 pic:3' TCATGTAGTAGA-TATGACAT 5'& ||||| .|.||||| &5' -------CATCTAGTGCTGTA 3' Rnf215 mmu-miR-181d beg:41 end:64 pic:3' TGGGTGGCTGTTGTTA-CTTACAA 5'& .||.|| || |||. ||.|| &5' GCCTAC--ACTACAGGAGAGTG-- 3' Rnf215 mmu-miR-184 beg:211 end:229 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |||. || ||.|||| &5' -----TATTTGTG-TCTGTCC- 3' Rnf215 mmu-miR-1906 beg:417 end:439 pic:3' TCGGGACGGAGTCC--GACGACGT 5'& ||||| |. ||||||| &5' ---CCTGCTCCGTGACCTGCTGC- 3' Rnf215 mmu-miR-1933-5p beg:104 end:121 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||| .| |||||.| &5' --------ACCATGC-CCATGGC- 3' Rnf215 mmu-miR-1954 beg:4 end:25 pic:3' TTGTC-CCAGAGTGAGACGTCA 5'& ||| || | |||||||| &5' --CAGTGGAA--AGTCTGCAGT 3' Rnf215 mmu-miR-1957 beg:305 end:326 pic:3' CAGTATACGAGATGGTGAC 5'& ||. |||||| |.|.|| &5' GTTTTATGCTAT-CTATTG 3' Rnf215 mmu-miR-196b beg:161 end:185 pic:3' GGGTTGT-TG-TCCTTTGATGGAT 5'& ||||.|| .| ||||.| |.| &5' CCCAGCAGGCAAGGAGAA-ATC-- 3' Rnf215 mmu-miR-1970 beg:388 end:408 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& ||..||||. .|| |||| &5' CAGGGCCTGA--TCAATGAC--- 3' Rnf215 mmu-miR-200c beg:284 end:307 pic:3' AGGTAGTAATG-GGCC-----GTCATAAT 5'& || |||| ||||.||. &5' ---------ACTCCGGAGCGTCAGTGTTG 3' Rnf215 mmu-miR-207 beg:167 end:194 pic:3' CTCCC-TCCTCTC-GGTCCTCTTCG 5'& ||| |||||| .|| | ||| &5' -AGGCAAGGAGAAATCATTAAGAGC 3' Rnf215 mmu-miR-214star beg:154 end:175 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& ||| .| .|||||| &5' ----AGCCGGACCCAGCAGGCA 3' Rnf215 mmu-miR-2183 beg:289 end:309 pic:3' TCCTC-CAGTCCCCAAGTT 5'& |||| ||||| ||| |. &5' -GGAGCGTCAGT-GTTGAG 3' Rnf215 mmu-miR-221 beg:542 end:563 pic:3' CTTTGGGTCGTCTGT--TACATCGA 5'& ||| |||| ||||.|. &5' -----CCA-CAGAATCTATGTGGT- 3' Rnf215 mmu-miR-24 beg:424 end:454 pic:3' GACAA-GGACGAC-------TTGACTCGGT 5'& || ||||||| |.|||||.. &5' --GTGACCTGCTGCCTGTCCAGCTGAGTT- 3' Rnf215 mmu-miR-24-2star beg:73 end:94 pic:3' TGACAAAGTCGAGT----CATCCGTG 5'& ||||| ||.|||| &5' -------CAGCTAGCCCTGTGGGCA- 3' Rnf215 mmu-miR-26a beg:523 end:544 pic:3' TCGGATAGGACCTAATGAACTT 5'& ||. || ||| |||||||. &5' ---CTGACCAGGA-TACTTGAG 3' Rnf215 mmu-miR-26b beg:523 end:544 pic:3' TGGATAGGACTTAATGAACTT 5'& ||. || |.| |||||||. &5' --CTGACCAGGA-TACTTGAG 3' Rnf215 mmu-miR-27bstar beg:434 end:456 pic:3' CAAGTGGTTA-GTCGATTCGAGA 5'& .|| .| |||||.||.||| &5' ----GCCTGTCCAGCTGAGTTCT 3' Rnf215 mmu-miR-28star beg:476 end:498 pic:3' AGGTCGTCGAGTGTTAGATCAC 5'& || .|| || |||||||| &5' -CCT-TAGAA-ACCATCTAGTG 3' Rnf215 mmu-miR-292-3p beg:197 end:219 pic:3' TGTGAGT--TTTGGACCGCCGTGAAA 5'& ||| |||||||| ||.|.|| &5' ---CTCTGCAAACCTGG-GGTATTT- 3' Rnf215 mmu-miR-294 beg:49 end:72 pic:3' TGTGTGTTTTC-CCTT-CGTGAAA 5'& .||| .|.|| ||.| | || &5' -TACAGGAGAGTGGGATGGAC--- 3' Rnf215 mmu-miR-296-3p beg:72 end:87 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& ||| |.|.|||| &5' ---------CCAGCTAGCCCT- 3' Rnf215 mmu-miR-296-3p beg:93 end:116 pic:3' CCTC-TCGGAGGTGGGTTGGGAG 5'& ||| .|.| ||||| .||| &5' GGAAAGGTC-CCACCATGCCC-- 3' Rnf215 mmu-miR-298 beg:185 end:204 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& || ||||||.|||||| &5' ------AAGAGCCCTTCTCTGC- 3' Rnf215 mmu-miR-326 beg:458 end:479 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& .|||| |||..|||||| &5' GCTGGCT---GGGTTCAGAGG 3' Rnf215 mmu-miR-330star beg:194 end:221 pic:3' AGAGACGTCCGGGACA-CG-AAACG 5'& |||||||| |||| |. ||||. &5' TCTCTGCAAA-CCTGGGGTATTTGT 3' Rnf215 mmu-miR-342-5p beg:270 end:292 pic:3' GAGTTAGTGTCTA----TCGTGGGGA 5'& ||| .| |||||.|| &5' ------CACCTGTCCCCAGCACTCC- 3' Rnf215 mmu-miR-346 beg:155 end:175 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& || || || || | ||||.|| &5' -GA-GCCGG-AC-CCAGCAGGCA 3' Rnf215 mmu-miR-3474 beg:439 end:462 pic:3' CTTAGGT--GCAGAGGAGGGTCCC 5'& .|||| .| |.||.||||| &5' --GTCCAGCTGAGTTCTTCCAGG- 3' Rnf215 mmu-miR-3475 beg:267 end:295 pic:3' AAGTTTGGTACA-----CG-GAGGTCT 5'& |.| ||| ||| || ||||.|| &5' -TTACACC-TGTCCCCAGCACTCCGGA 3' Rnf215 mmu-miR-365 beg:207 end:218 pic:3' TATTCCTAAAAATCCCCGTAAT 5'& ||||.||| &5' -------------GGGGTATT- 3' Rnf215 mmu-miR-383 beg:540 end:563 pic:3' TCGGTGTCAGTGGA-AGACTAGA 5'& .||||||| |.|| | ||.| &5' GGCCACAGA-ATCTATGTGGT-- 3' Rnf215 mmu-miR-384-3p beg:241 end:257 pic:3' TAACACTTGTTAAAGATCCTTA 5'& |||| |||.|||| &5' -------ACAAC-TCTGGGAA- 3' Rnf215 mmu-miR-429 beg:287 end:307 pic:3' TGCCGTAATGGTCT----GTCATAAT 5'& ||.|| ||||.||. &5' ---------CCGGAGCGTCAGTGTTG 3' Rnf215 mmu-miR-432 beg:128 end:145 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& ||| | | .|||||.| &5' --GCCTCC----CAGCTCCAGG- 3' Rnf215 mmu-miR-432 beg:443 end:460 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& .|||| .||||.| &5' ------GCTGAGTTCTTCCAGG- 3' Rnf215 mmu-miR-434-3p beg:466 end:477 pic:3' TCCTCAGCTCACTACCAAGTTT 5'& ||||||.| &5' --------------GGTTCAGA 3' Rnf215 mmu-miR-449c beg:424 end:441 pic:3' GGTCGATCGTTACGTGACGGA 5'& | | ..|||||| &5' -------GTGACCTGCTGCCT 3' Rnf215 mmu-miR-450a-3p beg:275 end:285 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& .||||||. &5' -------------GTCCCCAG- 3' Rnf215 mmu-miR-450b-5p beg:187 end:207 pic:3' ATAAGTCCTTGTAT---GACGTTTT 5'& ||.| ||||||| &5' -------GAGCCCTTCTCTGCAAA- 3' Rnf215 mmu-miR-450b-5p beg:557 end:575 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& || .||| ||||||.. &5' ------GGTGCAT-CTGCAAGG 3' Rnf215 mmu-miR-452 beg:193 end:208 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |.|||||||||| &5' ---------TTCTCTGCAAAC- 3' Rnf215 mmu-miR-463 beg:205 end:228 pic:3' GATGGAA--TATAC-CACAGATAGT 5'& |||| .||| ||||||.|| &5' --ACCTGGGGTATTTGTGTCTGTC- 3' Rnf215 mmu-miR-486 beg:39 end:59 pic:3' GAGCCCCGTCGA--GTCATGTCCT 5'& |||| || ||||||| &5' -------CAGCCTACACTACAGGA 3' Rnf215 mmu-miR-488 beg:357 end:386 pic:3' CTGGT------TCTTTGT-CGGAAAGTT 5'& |||| ||.||| |.|||||| &5' GACCCACTGGCAGGAACCTGTCTTTCA- 3' Rnf215 mmu-miR-500 beg:547 end:567 pic:3' ACTTGGGAACGGGTCCACGTAA 5'& |||.|. ||. ||||||| &5' -GAATCTATGT---GGTGCAT- 3' Rnf215 mmu-miR-501-3p beg:547 end:567 pic:3' GTTTAGGAACGGGCCCACGTAA 5'& .||||. ||. ||||||| &5' -GAATCTATGT---GGTGCAT- 3' Rnf215 mmu-miR-509-5p beg:197 end:216 pic:3' TACTAACGGTGTAA-GACCTCAT 5'& | || ||||.||| &5' -------CTGCAAACCTGGGGTA 3' Rnf215 mmu-miR-540-3p beg:386 end:410 pic:3' GGTCCTAG-CTGGAGACTGGA 5'& ||||| | ||.| ||||.| &5' CCAGGGCCTGATCAATGACTT 3' Rnf215 mmu-miR-713 beg:292 end:305 pic:3' CGACACACGGAAGTCACGT 5'& || ||||||. &5' -------GCG-TCAGTGT- 3' Rnf215 mmu-miR-743a beg:365 end:386 pic:3' AGATGAGTCGAACCACAGAAAG 5'& ||. ||| |||||||| &5' -CTGG-CAGGAACCTGTCTTTC 3' Rnf215 mmu-miR-743b-3p beg:365 end:386 pic:3' AGATAAGTCGTACT---ACAGAAAG 5'& .||| || |||||||| &5' -------GGCAGGAACCTGTCTTTC 3' Rnf215 mmu-miR-743b-5p beg:136 end:154 pic:3' ACTACCTGTGGTCAGACTTGT 5'& .| |||| ||||||| &5' ------GCTCCAGGCTGAACA 3' Rnf215 mmu-miR-762 beg:127 end:144 pic:3' CGAGACAGGGCCG--GGGTCGGGG 5'& ||| ||||||.|| &5' ----------GGCCTCCCAGCTCC 3' Rnf215 mmu-miR-762 beg:29 end:48 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& | || .|||||||. &5' -----GGACCCTTCCCAGCCT- 3' Rnf215 mmu-miR-767 beg:545 end:566 pic:3' ACGAGTCTGTTG-GTACCACGT 5'& |||| ..||||||| &5' ----CAGAATCTATGTGGTGCA 3' Rnf215 mmu-miR-7a beg:443 end:460 pic:3' TGTTGTTTTAGTGA-TC-AGAAGGT 5'& .|| || ||||||| &5' -----------GCTGAGTTCTTCCA 3' Rnf215 mmu-miR-7b beg:441 end:460 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ||.| .|.| ||||||| &5' -CAGCTGAGT------TCTTCCA 3' Rnf215 mmu-miR-802 beg:506 end:530 pic:3' TTCCTACTTAGAA--ACAATGACT 5'& || ||.. || ||||||||| &5' --GGTTGGG-CTAAATGTTACTGA 3' Rnf215 mmu-miR-875-5p beg:196 end:217 pic:3' GTGGACTATTTTGACTCCATAT 5'& .||| ||| |||.||||| &5' --TCTGC-AAACCTGGGGTAT- 3' Rnf215 mmu-miR-883a-3p beg:9 end:26 pic:3' TATGACTCTCGACAACGTCAAT 5'& || ||. ||||||| &5' -----GAAAGTC--TGCAGTT- 3' Rnf215 mmu-miR-883b-3p beg:6 end:26 pic:3' TATGACTCTCTACA-ACGTCAAT 5'& | | | || ||||||| &5' -----GTGGAAAGTCTGCAGTT- 3' Rnf215 mmu-miR-92astar beg:100 end:110 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& .|||||| &5' --------------TCCCACC- 3' Rnf215 mmu-miR-1938 beg:93 end:110 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& |.| |.|||||||| &5' ----GGAA---AGGTCCCACC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf215 RAID00182718 mmu-miR-141-3p miRNA MIMAT0000153 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00183763 mmu-miR-500-3p miRNA MIMAT0003507 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00307514 mmu-miR-802-5p miRNA MIMAT0004188 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00341313 mmu-miR-1224-5p miRNA MIMAT0005460 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00359699 mmu-miR-135a-5p miRNA MIMAT0000147 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00410545 mmu-miR-3083-5p miRNA MIMAT0014874 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00464972 mmu-miR-129-5p miRNA MIMAT0000209 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00506812 mmu-miR-5627-3p miRNA MIMAT0022386 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00607416 mmu-miR-330-5p miRNA MIMAT0004642 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00699362 mmu-miR-135b-5p miRNA MIMAT0000612 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00731226 mmu-miR-8103 miRNA MIMAT0031407 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00764434 mmu-miR-450a-5p miRNA MIMAT0001546 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00814980 mmu-miR-7035-5p miRNA MIMAT0027974 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID00985894 mmu-miR-687 miRNA MIMAT0003466 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID01300832 mmu-miR-292a-5p miRNA MIMAT0000369 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID01317235 mmu-miR-26a-5p miRNA MIMAT0000533 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID01325346 mmu-miR-592-5p miRNA MIMAT0003730 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID01351456 mmu-miR-200a-3p miRNA MIMAT0000519 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID01812783 mmu-miR-3113-3p miRNA MIMAT0014960 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID01969118 mmu-miR-148a-3p miRNA MIMAT0000516 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID02190409 mmu-miR-763 miRNA MIMAT0003896 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID02610328 mmu-miR-142a-3p miRNA MIMAT0000155 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID02745700 mmu-miR-501-3p miRNA MIMAT0003509 Rnf215 mRNA 71673 Prediction 0.2202 Rnf215 RAID02786166 mmu-miR-770-5p miRNA MIMAT0004822 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID02832604 mmu-miR-761 miRNA MIMAT0003893 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03066796 mmu-miR-194-5p miRNA MIMAT0000224 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03258684 mmu-miR-26b-5p miRNA MIMAT0000534 Rnf215 mRNA 71673 Prediction 0.2202 Rnf215 RAID03259452 mmu-miR-6393 miRNA MIMAT0025143 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03308246 mmu-miR-365-3p miRNA MIMAT0000711 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03368062 mmu-miR-148b-3p miRNA MIMAT0000580 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03429353 mmu-miR-376c-3p miRNA MIMAT0003183 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03569492 mmu-miR-214-3p miRNA MIMAT0000661 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03605150 mmu-miR-433-3p miRNA MIMAT0001420 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03886682 mmu-miR-3090-3p miRNA MIMAT0014902 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID03890623 mmu-miR-152-3p miRNA MIMAT0000162 Rnf215 mRNA 71673 Prediction 0.1828 Rnf215 RAID04036256 mmu-miR-6354 miRNA MIMAT0025097 Rnf215 mRNA 71673 Prediction 0.1828