DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Senp3; Smt3ip; Smt3ip1 ATTTA 196-1902 2013-2017 Senp3; Smt3ip; Smt3ip1 WWATTTAWW 196-1902 2011-2019

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT581144 mmu-miR-410-3p Mus musculus Senp3 80886 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT581143 mmu-miR-344d-3p Mus musculus Senp3 80886 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT581142 mmu-miR-344e-3p Mus musculus Senp3 80886 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000217 mmu-miR-188-5p 80886 Senp3 gggaggugGUACG-UUCCCUAc |: || ||||||| gugguggaCGCGCAAAGGGAUu 2 14 294 315 [mm9:11:69486713-69486734:-] 0.6696 144 7 -13.76 -0.3547 MIMAT0004578 mmu-miR-300* 80886 Senp3 uguuuccuauuggagAGAAGUu |||||| uuacugccugcccgaUCUUCAa 2 8 314 335 [mm9:11:69486693-69486714:-] 0.6696 120 6 -11.77 -0.1049 MIMAT0004626 mmu-miR-18a* 80886 Senp3 gucuuccuCGUGAAUCCCGUCa |: | ||||||| ccuuccauGUUCAGAGGGCAGg 2 15 258 279 [mm9:11:69486749-69486770:-] 0.6191 142 7 -14.10 -0.4521 MIMAT0004640 mmu-miR-325 80886 Senp3 aacuauccuccACGAGUUAUUu || ||||||| cgguccugcucUGGUCAAUAAa 2 12 374 395 [mm9:11:69486633-69486654:-] 0.6696 147 7 -9.07 -0.5912 MIMAT0004665 mmu-miR-218-1* 80886 Senp3 ccacgaacugccuuGGUACAAa ||||||| agccauuccuccuuCCAUGUUc 2 9 248 269 [mm9:11:69486759-69486780:-] 0.5686 140 7 -8.78 -0.2713 MIMAT0004670 mmu-miR-7a* 80886 Senp3 auACCGUCUGACACUAAACAAc |||: |||| |||||| uuUGGU-UUCUGUAUUUUGUUu 2 21 120 140 [mm9:11:69486888-69486908:-] 0.6336 126 6 -13.37 -0.2986 MIMAT0004786 mmu-miR-540-5p 80886 Senp3 ugUCUCAGUCUCCCACUGGGAAc ||:| | |||| ||||||| gcAGGG-GAAAGGGAGACCCUUc 2 22 34 55 [mm9:11:69486973-69486994:-] 0.5621 163 7 -27.48 -0.1191 MIMAT0004786 mmu-miR-540-5p 80886 Senp3 ugucucagucucccaCUGGGAAc ||||||| --gccucauaccccaGACCCUUa 2 9 1 21 [mm9:11:69487007-69487027:-] 0.6590 140 7 -10.93 -0.8362 MIMAT0003735 mmu-miR-672 80886 Senp3 aguguGUGUCAUGUGGUU-GGAGu |||| | | ||| |||| auggcCACAUAAAAGCAAGCCUCu 2 19 180 203 [mm9:11:69486825-69486848:-] 0.6336 122 0 -16.19 -0.6943 MIMAT0003462 mmu-miR-684 80886 Senp3 aacugaacuucCCUUUUGa ||||||| uucagagggcaGGAAAACa 2 9 267 285 [mm9:11:69486743-69486761:-] 0.6191 140 7 -10.25 -0.6498 MIMAT0003474 mmu-miR-694 80886 Senp3 gaaguccguugUAAAAGUc ||||||| auucccuuuggAUUUUCAu 2 9 92 110 [mm9:11:69486918-69486936:-] 0.6336 140 7 -6.69 -0.9372 MIMAT0003496 mmu-miR-706 80886 Senp3 aaaaaacucuguccCAAAGAGa ||||||| ucuaguuccuuuuuGUUUCUCu 2 9 65 86 [mm9:11:69486942-69486963:-] 0.6336 140 7 -9.60 -1.1254 MIMAT0003496 mmu-miR-706 80886 Senp3 aaAAAACUCUGUCCCAAAGAga ||| | :: ||||||| uaUUUAAAUGUUUGGUUUCUgu 3 21 110 131 [mm9:11:69486897-69486918:-] 0.6336 132 0 -8.61 -0.2039 MIMAT0003498 mmu-miR-708* 80886 Senp3 gaucuucgagUGUCAGAUCAAc | | ||||||| ccuucccaagAAACUCUAGUUc 2 13 51 72 [mm9:11:69486956-69486977:-] 0.5955 144 7 -9.42 -0.3500 MIMAT0003508 mmu-miR-501-5p 80886 Senp3 aaaGUGGGUCC--CUGUUUCCUAa ::|:| || |:||||||| uccUGCUCUGGUCAAUAAAGGAUc 2 20 377 400 [mm9:11:69486628-69486651:-] 0.6696 150 7 -15.99 -0.4934 MIMAT0003512 mmu-miR-450b-3p 80886 Senp3 uacgUACGUUUUACAAGGGUUa | | |:| ||||||| ggaaAGGGAGACCCUUCCCAAg 2 19 39 60 [mm9:11:69486968-69486989:-] 0.5859 146 7 -12.00 -0.1027 MIMAT0004842 mmu-miR-879 80886 Senp3 ccgAAUCUCGAUAUUCGGAGa | | ||| ||||||| acaUAAAAGC---AAGCCUCu 2 19 186 203 [mm9:11:69486825-69486842:-] 0.6336 142 7 -13.83 -0.6256 MIMAT0004868 mmu-miR-343 80886 Senp3 agACCCGUGUAC-UUCCCUCu |||||| : | ||||||| agUGGGCAGGGGAAAGGGAGa 2 19 29 49 [mm9:11:69486979-69486999:-] 0.5621 161 7 -26.31 -0.2603 MIMAT0004883 mmu-miR-466g 80886 Senp3 acacACACGUACACAGACAUa ||| :: || |||||| uaaaUGUUUG-GUUUCUGUAu 2 18 114 133 [mm9:11:69486895-69486914:-] 0.6336 123 6 -11.02 -0.2304 MIMAT0004892 mmu-miR-568 80886 Senp3 cacacauauguAAAUAUGUa ||||||:| ucaaacuuuuuUUUAUAUAu 2 10 332 351 [mm9:11:69486677-69486696:-] 0.6696 129 0 -5.21 -0.1646 MIMAT0004938 mmu-miR-875-3p 80886 Senp3 guaucGGAGUCAUAAAAGUcc |||: | ||||||| aauucCCUUUGGAUUUUCAua 3 17 91 111 [mm9:11:69486917-69486937:-] 0.6336 140 0 -9.31 -0.2191 MIMAT0005294 mmu-miR-467e* 80886 Senp3 uaUAUCCACACACAUACAUAUa | | | | | ||| |||| ucAAACUUUUUUUUAUAUAUAu 2 21 332 353 [mm9:11:69486675-69486696:-] 0.6696 120 0 -0.97 -0.1343 MIMAT0005830 mmu-miR-466l 80886 Senp3 uuauacACACGUACAUAAAUau | | || |||||| uuuggaUUUUCA--UAUUUAaa 3 17 98 117 [mm9:11:69486911-69486930:-] 0.6336 121 0 -2.59 -0.1249 MIMAT0005839 mmu-miR-669f 80886 Senp3 uaugcacACACACAUACAUAUAc | | | ||| ||||| ucaaacuUUUUUUUAUAUAUAUa 2 17 332 354 [mm9:11:69486674-69486696:-] 0.6696 124 0 -0.76 -0.1908 MIMAT0007872 mmu-miR-1906 80886 Senp3 ucGGGACGGAGUCCGACGACGu :::||::|: :|||||| uaUUUUGUUUUUUUUUGCUGCg 2 21 131 152 [mm9:11:69486876-69486897:-] 0.6336 136 6 -19.73 -0.2361 MIMAT0007876 mmu-miR-1907 80886 Senp3 uggaggucuAGGAGACGACGag |::|:|||||| auuuuguuuUUUUUUGCUGCga 3 14 132 153 [mm9:11:69486875-69486896:-] 0.6336 133 0 -13.71 -0.3371 MIMAT0007878 mmu-miR-1894-3p 80886 Senp3 gaGGGAAGUGGG-AGAGGGAAcg ::|| :|||| :|||||| guUUCUCUACCCAAUUCCCUUug 3 21 79 101 [mm9:11:69486927-69486949:-] 0.6336 139 0 -23.06 -0.1647 MIMAT0009397 mmu-miR-1933-3p 80886 Senp3 uaucAGUGUGAC--UACCAGGACc | | | || | ||||||| uauaUAAAAAUGCCACGGUCCUGc 2 19 359 382 [mm9:11:69486646-69486669:-] 0.6696 145 7 -14.41 -0.7866 MIMAT0009419 mmu-miR-669m 80886 Senp3 uauacAAACACACCUACAUAUa ||| | | || |||| aaacuUUUUUUUAUAUAUAUAa 2 18 334 355 [mm9:11:69486673-69486694:-] 0.6696 121 0 -0.89 -0.2334 MIMAT0009423 mmu-miR-1952 80886 Senp3 gucuuccucCCACCUCu ||||||| uguggccuaGGUGGAGc 2 9 231 247 [mm9:11:69486781-69486797:-] 0.6011 140 7 -13.64 -0.2636 MIMAT0009456 mmu-miR-1839-5p 80886 Senp3 guucuGGACAAGAUAGAUGGaa ::|||| | |||||| uccuuUUUGUU-UCUCUACCca 3 18 71 91 [mm9:11:69486937-69486957:-] 0.6336 135 0 -12.27 -0.1648 MIMAT0011210 mmu-miR-2134 80886 Senp3 cgUGGGGCAAAGGGUUCUg |||| ||||||||| agACCC---UUCCCAAGAa 2 18 47 62 [mm9:11:69486966-69486981:-] 0.5955 153 7 -20.30 -0.9309 MIMAT0000124 mmu-miR-15b 80886 Senp3 acauuugguacuACACGACGau | |||||| auuuuguuuuuuUUUGCUGCga 3 11 132 153 [mm9:11:69486875-69486896:-] 0.6336 122 0 -7.40 -0.3371 MIMAT0000225 mmu-miR-195 80886 Senp3 cgguUAUAAAGACACGACGau :| |||:| |||||| uuuuGUUUUUUUUUGCUGCga 3 18 133 153 [mm9:11:69486875-69486895:-] 0.6336 141 0 -10.33 -0.3234 MIMAT0000237 mmu-miR-204 80886 Senp3 ucCGUAUCCUAC-UGUUUCCCUu |:: ||| | :|||||||| ggGUGGUGGACGCGCAAAGGGAu 2 21 292 314 [mm9:11:69486714-69486736:-] 0.6696 155 7 -20.59 -0.1837 MIMAT0004576 mmu-miR-296-3p 80886 Senp3 ccucuCGGAG-GU-GGGU-UGGGAg ||||| :| |||| ||||| -----GCCUCAUACCCCAGACCCUu 2 18 1 20 [mm9:11:69487008-69487027:-] 0.6590 127 0 -24.63 -0.3474 MIMAT0000526 mmu-miR-15a 80886 Senp3 guguuugguAAUACACGACGau || | |||||| auuuuguuuUUUUUUGCUGCga 3 14 132 153 [mm9:11:69486875-69486896:-] 0.6336 129 0 -9.10 -0.3343 MIMAT0000527 mmu-miR-16 80886 Senp3 gcgguUAUAAAUGCACGACGau :| ||| : |||||| auuuuGUUUUUUUUUGCUGCga 3 18 132 153 [mm9:11:69486875-69486896:-] 0.6336 133 0 -8.54 -0.3234 MIMAT0000546 mmu-miR-103 80886 Senp3 aguaucgggacauguuACGACGa |||||| guauuuuguuuuuuuuUGCUGCg 2 8 130 152 [mm9:11:69486876-69486898:-] 0.6336 120 6 -12.41 -0.2404 MIMAT0000548 mmu-miR-322 80886 Senp3 agguuuuguacuuAACGACGac ||||||| auuuuguuuuuuuUUGCUGCga 3 10 132 153 [mm9:11:69486875-69486896:-] 0.6336 125 0 -10.29 -0.3371 MIMAT0000559 mmu-miR-326 80886 Senp3 ugaccuccuucccGGGUCUcc |||||| ----gccucauacCCCAGAcc 3 9 1 17 [mm9:11:69487011-69487027:-] 0.7513 120 0 -9.24 -0.1754 MIMAT0004642 mmu-miR-330 80886 Senp3 cggauucuGUGUCCGGGUCUcu ||:| |||||| ----gccuCAUA-CCCCAGAcc 3 15 1 17 [mm9:11:69487011-69487027:-] 0.7513 124 0 -14.90 -0.1704 MIMAT0004651 mmu-miR-340-5p 80886 Senp3 uuAGUCAGAGUAACGAAAUAUu ||| || || :|||||| cuUCAAACU--UUUUUUUAUAu 2 21 330 349 [mm9:11:69486679-69486698:-] 0.6696 137 6 -5.23 -0.4281 MIMAT0000647 mmu-miR-107 80886 Senp3 acuaucgggacauguuACGACGa |||||| guauuuuguuuuuuuuUGCUGCg 2 8 130 152 [mm9:11:69486876-69486898:-] 0.6336 120 6 -12.41 -0.2404 MIMAT0000668 mmu-miR-211 80886 Senp3 ucCGUUUCCUAC-UGUUUCCCUu |::: ||| | :|||||||| ggGUGGUGGACGCGCAAAGGGAu 2 21 292 314 [mm9:11:69486714-69486736:-] 0.6696 159 7 -21.54 -0.1837 MIMAT0000743 mmu-miR-379 80886 Senp3 ggaugcaagguaucAGAUGGu |||||| uuccuuuuuguuucUCUACCc 2 8 70 90 [mm9:11:69486938-69486958:-] 0.6336 120 6 -16.82 -0.1804 MIMAT0001091 mmu-miR-410 80886 Senp3 uguccgguAGACACAAUAUAa |:| | |||||| cuucaaacUUUUUUUUAUAUa 2 14 330 350 [mm9:11:69486678-69486698:-] 0.6696 121 6 -3.17 -0.6730 MIMAT0003168 mmu-miR-543 80886 Senp3 uucuucacguggCGCUUACAAa | ||||||| cucccucuauagGAGAAUGUUg 2 11 206 227 [mm9:11:69486801-69486822:-] 0.6336 142 7 -7.94 -0.4359 MIMAT0003168 mmu-miR-543 80886 Senp3 uucuucacguggcgcUUACAAa |||||| ggauuuucauauuuaAAUGUUu 2 8 101 122 [mm9:11:69486906-69486927:-] 0.6336 120 6 -6.19 -0.1197 MIMAT0003182 mmu-miR-494 80886 Senp3 cuccAAAGGGCACA--UACAAAgu |||| : | | |||||| ggauUUUCAUAUUUAAAUGUUUgg 3 19 101 124 [mm9:11:69486904-69486927:-] 0.6336 129 0 -7.05 -0.2607 MIMAT0003727 mmu-miR-374 80886 Senp3 guGAAUCGUCCAACAUAAUAUa ||| | || | ||||| auCUUCAAACUUUUUUUUAUAu 2 21 328 349 [mm9:11:69486679-69486700:-] 0.6696 120 0 -2.21 -0.1028 MIMAT0003453 mmu-miR-497 80886 Senp3 auguuuggugucACACGACGac | |||||| auuuuguuuuuuUUUGCUGCga 3 11 132 153 [mm9:11:69486875-69486896:-] 0.6336 122 0 -9.29 -0.3426 MIMAT0005850 mmu-miR-1192 80886 Senp3 uuAAACCAGACA-AACAAACAAa ||||||:| | | |||||| ugUUUGGUUUCUGUAUUUUGUUu 2 21 118 140 [mm9:11:69486888-69486910:-] 0.6336 139 6 -15.69 -0.2885

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G069192 Senp3 Mus musculus 80886

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Senp3 mmu-miR-204 beg:296 end:314 pic:3' TCCGTATCCTAC-TGTTTCCCTT 5'& ||| | .|||||||| &5' -------GGACGCGCAAAGGGA- 3' Senp3 mmu-miR-211 beg:296 end:314 pic:3' TCCGTTTCCTAC-TGTTTCCCTT 5'& ||| | .|||||||| &5' -------GGACGCGCAAAGGGA- 3' Senp3 mmu-miR-879 beg:190 end:204 pic:3' CCGAATCTCGATATTCGGAGA 5'& ||| |||||||| &5' -------AGC---AAGCCTCT 3' Senp3 mmu-miR-188-5p beg:299 end:315 pic:3' GGGAGGTGGTACG-TTCCCTAC 5'& |.| || ||||||| &5' -----CGC---GCAAAGGGAT- 3' Senp3 mmu-miR-2134 beg:46 end:62 pic:3' CGTGGGGCAAAGGGTTCTG 5'& ||||. |||||||| &5' --ACCCT---TCCCAAGA- 3' Senp3 mmu-miR-684 beg:268 end:285 pic:3' AACTGAACTTC---CCTTTTGA 5'& ||.| ||||||| &5' -------GAGGGCAGGAAAAC- 3' Senp3 mmu-miR-1933-3p beg:372 end:382 pic:3' TATCAGTGTGACTACCAGGACC 5'& ||||||| &5' --------------GGTCCTG- 3' Senp3 mmu-miR-1952 beg:231 end:247 pic:3' GTCTTCCTC--CCACCTCT 5'& || ||||||| &5' -----GGCCTAGGTGGAG- 3' Senp3 mcmv-miR-M44-1 beg:368 end:400 pic:3' TGGCGC-----CGAGACCT----TTTTCTAT 5'& .|| || ||||||| |||.||| &5' GCCACGGTCCTGCTCTGGTCAATAAAGGAT- 3' Senp3 mcmv-miR-m88-1 beg:148 end:169 pic:3' TCTGGGGCT---GTAGCTGAAGAC 5'& ||| .||.||.||||| &5' ------CGAGTATATTGATTTCTG 3' Senp3 mmu-miR-106bstar beg:271 end:292 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& .|||.| | ||||||.|| &5' --GGCAGG-AAA-ACAGTGTGG 3' Senp3 mmu-miR-1188 beg:0 end:11 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& .|||||.||| &5' ----------GCCTCATACC- 3' Senp3 mmu-miR-1193 beg:221 end:240 pic:3' CTATCATTTTGCC-CACTGGAT 5'& || .| |||.|||| &5' ----GTT--GCCTTGTGGCCTA 3' Senp3 mmu-miR-130bstar beg:27 end:47 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |||.| ||| .|||||||.| &5' AGTGG-GCA--GGGGAAAGGG- 3' Senp3 mmu-miR-15astar beg:221 end:239 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& |. || | |.|||||| &5' ----GTTGC-CT-TGTGGCCT- 3' Senp3 mmu-miR-185 beg:195 end:210 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |||| |.||||| &5' ---------GCCTCTTTCTCC- 3' Senp3 mmu-miR-1894-5p beg:29 end:50 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& .|||||| || |||||| &5' --GGGCAGG-GGAAAGGGAGA- 3' Senp3 mmu-miR-1897-5p beg:69 end:93 pic:3' GGGGGAG--AAAGAGGTAGGTTTC 5'& ||..|. ||||||.| |||| &5' -CCTTTTTGTTTCTCTACCCAA-- 3' Senp3 mmu-miR-1904 beg:255 end:281 pic:3' GGAGGG---AGGTCTCCTCGTCTTG 5'& |||.|| |.|||||| ||||.| &5' CCTTCCATGTTCAGAGG-GCAGGA- 3' Senp3 mmu-miR-1967 beg:314 end:335 pic:3' CGTAGAA-GAGGGGTCCTAGGAGT 5'& || || ||| ||||.||| &5' ----CTGCCTGCCC--GATCTTCA 3' Senp3 mmu-miR-196b beg:303 end:324 pic:3' GGGTTGTTGTCCTT-TGATGGAT 5'& .||| .||| |||.|||. &5' ----GCAAAGGGATTACTGCCTG 3' Senp3 mmu-miR-1982star beg:49 end:68 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||.|||| || |||. &5' CCTTCCCAAGAAACTCT--- 3' Senp3 mmu-miR-1983 beg:234 end:245 pic:3' TCTTTTGTACGAGGTCCACTC 5'& || |.|||||. &5' ---------GC-CTAGGTGG- 3' Senp3 mmu-miR-204 beg:165 end:181 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& ||||. .||||||| &5' --------GATGG-GAAGGGAA 3' Senp3 mmu-miR-211 beg:165 end:181 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& ||||. .||||||| &5' --------GATGG-GAAGGGAA 3' Senp3 mmu-miR-24-2star beg:16 end:37 pic:3' TGACAAAGTCG---AGTCATCCGTG 5'& |.||| |||||.|||| &5' ------TTAGCCCATCAGTGGGCA- 3' Senp3 mmu-miR-300star beg:322 end:336 pic:3' TGTTTCCTATTGGAGAGAAGTT 5'& || ||||||| &5' -----------CCGATCTTCAA 3' Senp3 mmu-miR-3099 beg:224 end:240 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& .|||. |.||||| &5' ------GCCTTG---TGGCCTA 3' Senp3 mmu-miR-3473 beg:191 end:210 pic:3' CCGACTCGGT-AGAGAGGT 5'& || |||| |.||||| &5' -GCA-AGCCTCTTTCTCC- 3' Senp3 mmu-miR-361 beg:151 end:173 pic:3' CATGGGGACCTCTAAGACTATT 5'& |||. .|| |||||||.. &5' GTATA-TTGAT--TTCTGATGG 3' Senp3 mmu-miR-383 beg:368 end:390 pic:3' TCGGTGTCAGTGGA-AGACTAGA 5'& |||||.||| |. ||||.|| &5' -GCCACGGTC-CTGCTCTGGTC- 3' Senp3 mmu-miR-449a beg:302 end:322 pic:3' TGGTCGATTGTTATGTGACGGT 5'& || || .. .|||||| &5' ----GCAAAGGGATTACTGCC- 3' Senp3 mmu-miR-449b beg:302 end:323 pic:3' CGGTCGATTGTT--GTGACGGA 5'& || || .. .||||||| &5' ----GCAAAGGGATTACTGCCT 3' Senp3 mmu-miR-449c beg:302 end:323 pic:3' GGTCGA-TCGTTACGTGACGGA 5'& || || .|| .||||||| &5' ---GCAAAGGGAT-TACTGCCT 3' Senp3 mmu-miR-450a-3p beg:315 end:336 pic:3' TACTTACGTTTCG---TAGGGGTTA 5'& ||| || |||..||| &5' -----TGCCT-GCCCGATCTTCAA- 3' Senp3 mmu-miR-493 beg:314 end:335 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& || || ..| ||.||||| &5' -CT-GCCTGCCC---GATCTTCA 3' Senp3 mmu-miR-501-5p beg:378 end:400 pic:3' AAAGTGGGTCCC--TGTTTCCTAA 5'& .|.| || |.||||||| &5' ----GCTCTGGTCAATAAAGGAT- 3' Senp3 mmu-miR-532-3p beg:272 end:295 pic:3' ACGTTCGGAACCCACACCCTCC 5'& |||.| |||||||.| &5' -GCAGGAAAACAGTGTGGGGG- 3' Senp3 mmu-miR-540-5p beg:34 end:55 pic:3' TGTCTCAGTCTCCCACTGGGAAC 5'& |||.| | |||| ||||||| &5' -CAGGGGAA-AGGGAGACCCTT- 3' Senp3 mmu-miR-673-3p beg:367 end:388 pic:3' CCAC-GTGTCTTGAGTCGGGGCCT 5'& || |||.| || ||.|.|| &5' --TGCCACGGTCCT--GCTCTGG- 3' Senp3 mmu-miR-680 beg:256 end:277 pic:3' GGGGGTACAGTCGTCTA-CGGG 5'& |..||||||. |||| || &5' CTTCCATGTT--CAGAGGGC-- 3' Senp3 mmu-miR-691 beg:262 end:282 pic:3' AAAAGACGGAGAGAA-GTCCTTA 5'& ||.. |||||| &5' -----TGTTCAGAGGGCAGGAA- 3' Senp3 mmu-miR-743a beg:107 end:130 pic:3' AGATGAGT---CGAACCACAGAAAG 5'& ||.|.| |.||||| ||| &5' --TATTTAAATGTTTGGTTTCT--- 3' Senp3 mmu-miR-881star beg:66 end:87 pic:3' TCTACACTGAC-AATAGAGAGAC 5'& || || ||.|.||||| &5' ----GTTCCTTTTTGTTTCTCT- 3' Senp3 mmu-miR-882 beg:191 end:210 pic:3' TGATTACG--CGATTGAGAGAGGA 5'& || || ||.||||| &5' ------GCAAGCCT-CTTTCTCC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Senp3; Smt3ip; Smt3ip1 mmu-let-7b 301 324 UUGGUGUGUUG----GAUGAUGGAGU |:|:||| :||||:||| --ACGCGCAAAGGGAUUACUGCCUG- Senp3; Smt3ip; Smt3ip1 mmu-let-7g 304 324 UGACAUGU----UUGAUGAUGGAGU :|| :|:||||:||| ----CGCAAAGGGAUUACUGCCUG- Senp3; Smt3ip; Smt3ip1 mmu-let-7i 302 324 UGUCGUGU----UUGAUGAUGGAGU ||:|| :|:||||:||| --CGCGCAAAGGGAUUACUGCCUG- Senp3; Smt3ip; Smt3ip1 mmu-miR-103 226 249 AGUAUCGGGACAUG----UUACGACGA |||:|||: ::|| || ----UGCCUUGUGGCCUAGGUGGAGCA Senp3; Smt3ip; Smt3ip1 mmu-miR-107 222 249 -ACUAUCGGGACAUG----UUACGACGA || |||:|||: ::|| || AUGUU-GCCUUGUGGCCUAGGUGGAGCA Senp3; Smt3ip; Smt3ip1 mmu-miR-127 369 403 -CGGUU------CGAGUCUG-------CCUAGGCU |||| |||| |: |||||| UGCCACGGUCCUGCUCUGGUCAAUAAAGGAUCCU- Senp3; Smt3ip; Smt3ip1 mmu-miR-133a 32 53 UGUCGACCAACUUCCC-CUGGUU :|| || ||||| |||| -GGGCAGGGGAAAGGGAGACCC- Senp3; Smt3ip; Smt3ip1 mmu-miR-133b 32 53 AUCGACCAACUUCCC-CUGGUU :|| || ||||| |||| GGGCAGGGGAAAGGGAGACCC- Senp3; Smt3ip; Smt3ip1 mmu-miR-140* 206 237 -AGGCA-----CCAA----GAUGGGACACCAU ||| || :|:||:||||| CUCCCUCUAUAGGAGAAUGUUGCCUUGUGGC- Senp3; Smt3ip; Smt3ip1 mmu-miR-141 261 291 -GGUAGAAA----UGGUC----UGUCACAAU |||| || : ||| ||||||| UCCAUGUUCAGAGGGCAGGAAAACAGUGUG- Senp3; Smt3ip; Smt3ip1 mmu-miR-150 27 51 -GUGACCAUGUUCCCAA-CCCUCU- || ||| :||:||| |||||| UCAGUGG-GCAGGGGAAAGGGAGAC Senp3; Smt3ip; Smt3ip1 mmu-miR-152 370 389 GGGUUCAAGACAGUACGUGACU- ||| ||| ||| |||: GCCACG----GUCCUGCUCUGGU Senp3; Smt3ip; Smt3ip1 mmu-miR-181c 205 228 UGAGUGGC--UGUCCAACUUACAA- ||| || |:||| ||||||| UCUC-CCUCUAUAGGA-GAAUGUUG Senp3; Smt3ip; Smt3ip1 mmu-miR-188 14 43 -UGGGA----GGUGGUA---CGUUCCCUAC ||||| |||:|| |||:|||| GACCCUUAGCCCAUCAGUGGGCAGGGGAA- Senp3; Smt3ip; Smt3ip1 mmu-miR-196a 299 325 GGUUGU-UGUA--CUU--UGAUGGAU- :||: :|| |:| |||:|||: -GGACGCGCAAAGGGAUUACUGCCUGC Senp3; Smt3ip; Smt3ip1 mmu-miR-196b 304 325 GGUUGUUGUCCUU-UGAUGGAU- :||| :||| |||:|||: --CGCAAAGGGAUUACUGCCUGC Senp3; Smt3ip; Smt3ip1 mmu-miR-204 272 315 GUCCGUA------------UCCUAC--------UGUUUCCCUU :|||| :||:|| :|||||||| AGGGCAGGAAAACAGUGUGGGGGUGGUGGACGCGCAAAGGGAU Senp3; Smt3ip; Smt3ip1 mmu-miR-210 291 312 AGUCGGCGACAGUGUGCGUGUC- :| :| || ||:|||| || -GGGGUGGUGG-ACGCGCAAAGG Senp3; Smt3ip; Smt3ip1 mmu-miR-211 272 315 -UCCGUU------------UCCUAC--------UGUUUCCCUU :||||: :||:|| :|||||||| AGGGCAGGAAAACAGUGUGGGGGUGGUGGACGCGCAAAGGGAU Senp3; Smt3ip; Smt3ip1 mmu-miR-22 274 297 -UGUCAAGAAG-UUGACCGUCGAA :||| : ||| :|: GGCAGGAAAACAGUGUGGGGGUG- Senp3; Smt3ip; Smt3ip1 mmu-miR-222 226 249 CUCUGGGUCAUCGG-UCUACAUCGA :||: ||:||| ||:|| ||| --UGCCUUGUGGCCUAGGUGGAGCA Senp3; Smt3ip; Smt3ip1 mmu-miR-24* 13 38 UGACUAU-AGUCG---AGUCAUCCGUG || |:||| |||||:|||| --AGACCCUUAGCCCAUCAGUGGGCAG Senp3; Smt3ip; Smt3ip1 mmu-miR-298 239 265 -CCUUCUUGUCGG-GAGGAGAC-GG- || :||:||||| :||||| || AGGUGGAGCAGCCAUUCCUCCUUCCA Senp3; Smt3ip; Smt3ip1 mmu-miR-324-3p 273 302 GGUCGUCG---UGGA----CCCCGUCACC- :|||| || ||||::|||| -GGGCAGGAAAACAGUGUGGGGGUGGUGGA Senp3; Smt3ip; Smt3ip1 mmu-miR-328 270 297 UGCCUUCCCGUCU----------CUCCCGGUC :|||||||: |:|||: ---AGAGGGCAGGAAAACAGUGUGGGGGUG-- Senp3; Smt3ip; Smt3ip1 mmu-miR-330 209 235 AGAGACGUCCGGG-ACA-CGAAACG- |||| :||| ||| || |||: CCUCUAUAGGAGAAUGUUGCCUUGUG Senp3; Smt3ip; Smt3ip1 mmu-miR-331 210 246 AAGA--UCCUAU------------CCGGGUCC-CCG ||| |||| ||||:||| || CUCUAUAGGAGAAUGUUGCCUUGUGGCCUAGGUGGA Senp3; Smt3ip; Smt3ip1 mmu-miR-339 243 281 ACUCG-------------AGG-AC----CUCCUGUCCCU |||| ||| || ||||:|||| GGAGCAGCCAUUCCUCCUUCCAUGUUCAGAGGGCAGGA- Senp3; Smt3ip; Smt3ip1 mmu-miR-341 315 335 -UGACUGGCUGGCUGGCUAGCU |||| |:| ||||:| || UACUGCCUGCCCGAUCU-UCA- Senp3; Smt3ip; Smt3ip1 mmu-miR-345 229 252 CGUGACCUGAUCC-CCA-GUCGU : ||| ||||| || |||| CUUGUGGCCUAGGUGGAGCAGCC Senp3; Smt3ip; Smt3ip1 mmu-miR-346 269 302 -UCU-CCGUCCG--UGAG-----CCCGUCUGU- ||| |||||| || |||::| : CAGAGGGCAGGAAAACAGUGUGGGGGUGGUGGA Senp3; Smt3ip; Smt3ip1 mmu-miR-34a 296 323 -UUGUUG-GUCGAUUCU---GUGACGGU : :|| | || |||: :|||||| GGUGGACGC-GCAAAGGGAUUACUGCCU Senp3; Smt3ip; Smt3ip1 mmu-miR-34b 283 325 -GUUAGUCGAUUAA----UG-------------UGACGGAU ||:| | ::| || |||||||: ACAGUGUGGGGGUGGUGGACGCGCAAAGGGAUUACUGCCUGC Senp3; Smt3ip; Smt3ip1 mmu-miR-363 288 310 AAUGUCUACCUAUGGCACGUUA |: :|:||| || |||| GUGGGGGUGGUGGACGCGCAAA Senp3; Smt3ip; Smt3ip1 mmu-miR-370 10 37 UUGGUCCAAGG---UGGG--GUCGUCCG- |||| || :||| |||::||| -CCCAGAC-CCUUAGCCCAUCAGUGGGCA Senp3; Smt3ip; Smt3ip1 mmu-miR-379 64 91 -GGAUGCAAGGUAUC------AGAUGGU :||| ||||| |||||| CUCUA-GUUCCUUUUUGUUUCUCUACCC Senp3; Smt3ip; Smt3ip1 mmu-miR-383 369 391 UCGGUGUCA-GUGGAAGACUAGA |||||:|| | || |||:|| UGCCACGGUCCUGCU-CUGGUCA Senp3; Smt3ip; Smt3ip1 mmu-miR-411 288 307 UGACUCCCAAUCACCUG-GCACAA ||:||| |:|||||| || -GUGGGGG-UGGUGGACGCGC--- Senp3; Smt3ip; Smt3ip1 mmu-miR-412 226 248 UGCCGAU-CACCUGGUCCACUUCA || |||| |:|||||:|| --UGCCUUGUGGCCUAGGUGGAGC Senp3; Smt3ip; Smt3ip1 mmu-miR-425 295 331 -CCGCCUGUGC-------------UGUAAGGGCUA- ||:||||:|| :| |||||| UGGUGGACGCGCAAAGGGAUUACUGCCUGCCCGAUC Senp3; Smt3ip; Smt3ip1 mmu-miR-449b 283 324 GGUCGA----UCGUUAC---------------GUGACGGA |||: :|: || :||||||| ACAGUGUGGGGGUGGUGGACGCGCAAAGGGAUUACUGCCUG Senp3; Smt3ip; Smt3ip1 mmu-miR-450 288 313 AUAAUCCUUG-----UGUAGCGUUUUU- |:|| : ||: ||||||:: --GUGGGGGUGGUGGACG-CGCAAAGGG Senp3; Smt3ip; Smt3ip1 mmu-miR-450b* 29 61 UACGUACGUUUUAC-----------AAGGGUUA |: |||::: ||||||| -AGUGGGCAGGGGAAAGGGAGACCCUUCCCAAG Senp3; Smt3ip; Smt3ip1 mmu-miR-468 11 35 -GUCUGUGUG-CGUGUAGUCAGUAU ||||| | || ||||||| : CCAGACCCUUAGCCCAUCAGUGGG- Senp3; Smt3ip; Smt3ip1 mmu-miR-485-5p 179 205 CUUAAGUAGUGCCGG-----------UCGGAGA- |:|||| ||||||| --------AAUGGCCACAUAAAAGCAAGCCUCUU Senp3; Smt3ip; Smt3ip1 mmu-miR-488* 233 257 -CUGGUU---CUUUGUCGGAAAGUU |:|| |:|:||||| ||| UGGCCUAGGUGGAGCAGCCAUUCC- Senp3; Smt3ip; Smt3ip1 mmu-miR-490 233 276 GUCG----UACCUC-------AGGAGG------------UCCAAC :|| :||||| |||||| ||| UGGCCUAGGUGGAGCAGCCAUUCCUCCUUCCAUGUUCAGAGGG-- Senp3; Smt3ip; Smt3ip1 mmu-miR-500 222 247 GACU-UGGGAA--CGGGUCCACGUA || :||:| |||:||||| | AUGUUGCCUUGUGGCCUAGGUGGAG Senp3; Smt3ip; Smt3ip1 mmu-miR-501 21 43 AAAGUGGG---UC-CCUGUUUCCUAA :||| || ||:||::||| ---AGCCCAUCAGUGGGCAGGGGAA- Senp3; Smt3ip; Smt3ip1 mmu-miR-541 384 406 ACACUGGUUGUAGUCUUAGGGAA- ||::|||:| ||:||||:|| -CUGGUCAAUAA-AGGAUCCUUUG Senp3; Smt3ip; Smt3ip1 mmu-miR-652 225 256 -ACGU---GUUGGGAUCACCG---CGGUAA- ||| :::||: :|||| |||||| UUGCCUUGUGGCCUAGGUGGAGCAGCCAUUC Senp3; Smt3ip; Smt3ip1 mmu-miR-666 310 329 -CCGAGAGUGUCGACACGGGCGA || |:|| || |||||| GGGA--UUACUGCC-UGCCCGA- Senp3; Smt3ip; Smt3ip1 mmu-miR-668 28 52 CCAUCACCCGG-CUCGG-CUCACUGU ||||||| |:| |:| ||| --CAGUGGGCAGGGGAAAGGGAGACC Senp3; Smt3ip; Smt3ip1 mmu-miR-685 225 256 CACGGAG---UGGA--------GUCGGUAACU |||||: :||| |||||||| UUGCCUUGUGGCCUAGGUGGAGCAGCCAUUC- Senp3; Smt3ip; Smt3ip1 mmu-miR-689 13 43 CCUGGGG--CGG-------CUCG-CCCCUGC |||||: ||| |:|| ||||| AGACCCUUAGCCCAUCAGUGGGCAGGGGAA- Senp3; Smt3ip; Smt3ip1 mmu-miR-692 291 316 -CUCACU-CC-GCGAGUUUCUCUA- |:|||: || ||| |||||:||| GGGGUGGUGGACGCGCAAAGGGAUU Senp3; Smt3ip; Smt3ip1 mmu-miR-693-3p 179 201 AAUGUCGGUGUAGACUUUCGA-CG- |::||||||| ||||| || -AAUGGCCACAUA--AAAGCAAGCC Senp3; Smt3ip; Smt3ip1 mmu-miR-695 310 333 AAGUC-AGUGGAU-ACGGGUUAGA- :| |:||: |||||:|||| --GGGAUUACUGCCUGCCCGAUCUU Senp3; Smt3ip; Smt3ip1 mmu-miR-699 291 324 GCUCGGU-CCAGCG-----------UGACGGA- |:|: : || ||| ||||||| GGGGUGGUGGACGCGCAAAGGGAUUACUGCCUG Senp3; Smt3ip; Smt3ip1 mmu-miR-702 287 309 CUCGCCCCAUUUCCCACC----CGU- |:|||| ||||| ||| -UGUGGGGGU---GGUGGACGCGCAA Senp3; Smt3ip; Smt3ip1 mmu-miR-709 208 240 AGGAGG------------ACGGAGA--CGGAGG ||||: |||||: |||| CCCUCUAUAGGAGAAUGUUGCCUUGUGGCCUA- Senp3; Smt3ip; Smt3ip1 mmu-miR-712 374 400 -CCAUGGCGGGCCCAC----UUCCUC ||| |:||:| ||| ||||| CGGUCCUGCUCUGGUCAAUAAAGGAU Senp3; Smt3ip; Smt3ip1 mmu-miR-712* 281 309 GUUGU-GGGCCCCCA----CUGAGCGU- |||| : :|||||| ||| |||| AAACAGUGUGGGGGUGGUGGACGCGCAA Senp3; Smt3ip; Smt3ip1 mmu-miR-714 369 391 -CGCUGGCUGGCCGGGAGCAGC || || | || ||:|| ||| UGCCACGGUCCUGCUCUGGUCA Senp3; Smt3ip; Smt3ip1 mmu-miR-718 13 50 GCUG-----UGGG-------CCGG-CCCG--CCUUC- ||| :||| ||| ||| ||:|| AGACCCUUAGCCCAUCAGUGGGCAGGGGAAAGGGAGA Senp3; Smt3ip; Smt3ip1 mmu-miR-719 220 244 -UUGUAAAAAGACAUCGGCUCUA- ||::|| :|||:||| ||:| GAAUGUUGCCUUGUGGCCUAGGUG Senp3; Smt3ip; Smt3ip1 mmu-miR-761 117 153 -ACACAGUCAAAGUGG-------------GACGACG- ||| |::||||| : :|||||| AUGU-UUGGUUUCUGUAUUUUGUUUUUUUUUGCUGCG Senp3; Smt3ip; Smt3ip1 mmu-miR-762 2 27 CGAGACA-GGGCC-GGG-GUCGGGG ||| ||| | ||| :||||| CCUCAUACCCCAGACCCUUAGCCCA Senp3; Smt3ip; Smt3ip1 mmu-miR-764-3p 223 240 UGUCAACGGUGAUACCGGAGGA |||||| :|:|||||| --UGUUGCC-UUGUGGCCUA-- Senp3; Smt3ip; Smt3ip1 mmu-miR-204 41 48 G-------------------------UCCGUAUCCUACUGUUUCCCUU :|||| :|| |||||||: AUACCCCAGACCCUUAGCCCAUCAGUGGGCAGGGG-----AAAGGGAGA Senp3; Smt3ip; Smt3ip1 mmu-miR-204 307 314 GUCCGUA------------UCCUAC--------UGUUUCCCUU :|||| :||:|| :|||||||| AGGGCAGGAAAACAGUGUGGGGGUGGUGGACGCGCAAAGGGAU Senp3; Smt3ip; Smt3ip1 mmu-miR-211 41 48 --------------------------UCCGUUUCCUACUGUUUCCCUU :||||::|| |||||||: AUACCCCAGACCCUUAGCCCAUCAGUGGGCAGGGG-----AAAGGGAGA Senp3; Smt3ip; Smt3ip1 mmu-miR-211 307 314 -UCCGUU------------UCCUAC--------UGUUUCCCUU :||||: :||:|| :|||||||| AGGGCAGGAAAACAGUGUGGGGGUGGUGGACGCGCAAAGGGAU Senp3; Smt3ip; Smt3ip1 mmu-miR-34b 316 323 GUUAGU------------------CGAUUAAU--GUGACGGAU || || :|||||||: AAACAGUGUGGGGGUGGUGGACGCGCAAAGGGAUUACUGCCUGC Senp3; Smt3ip; Smt3ip1 mmu-miR-450b* 53 60 UA--------------CGUACGUUUUAC-------AAGGGUUA ||| | :||| ||||||| CUUAGCCCAUCAGUGGGCAGGGGAAAGGGAGACCCUUCCCAAG Senp3; Smt3ip; Smt3ip1 mmu-miR-501 393 400 AAAG-------------------UGGGUCCC--UGUUUCCUAA :|:| || |:||||||| AUAUAUAAAAAUGCCACGGUCCUGCUCUGGUCAAUAAAGGAUC Senp3; Smt3ip; Smt3ip1 mmu-let-7b 299 324 uugGUGUGUU----GGAUGAUGGAgu |:|:||| :||||:||| ggaCGCGCAAAGGGATTACTGCCTgc Senp3; Smt3ip; Smt3ip1 mmu-let-7g 301 324 UGACAUGUU----UGAUGAUGGAgu || | :||| |:||||:||| AC-GCGCAAAGGGATTACTGCCTgc Senp3; Smt3ip; Smt3ip1 mmu-let-7i 301 324 UGUCGUGUU----UGAUGAUGGAgu || ||:||| |:||||:||| AC-GCGCAAAGGGATTACTGCCTgc Senp3; Smt3ip; Smt3ip1 mmu-miR-103 202 229 aguaucGGGACAUG-----UUACGACGa |||| ||: ||||:||| ctttctCCCTCTATAGGAGAATGTTGCc Senp3; Smt3ip; Smt3ip1 mmu-miR-107 202 229 acuaucGGGACAUG-----UUACGACGa |||| ||: ||||:||| ctttctCCCTCTATAGGAGAATGTTGCc Senp3; Smt3ip; Smt3ip1 mmu-miR-127 376 403 CGGUUCGAGUC-------UGCCUAGGcu |:| |||| | | |||||| GTCCTGCTCTGGTCAATAAAGGATCCtt Senp3; Smt3ip; Smt3ip1 mmu-miR-133a 31 53 uguCGACCAACUUCCC-CUGGuu || || ||||| |||| tggGCAGGGGAAAGGGAGACCct Senp3; Smt3ip; Smt3ip1 mmu-miR-133b 32 53 auCGACCAACUUCCC-CUGGuu || || ||||| |||| ggGCAGGGGAAAGGGAGACCct Senp3; Smt3ip; Smt3ip1 mmu-miR-140* 211 237 AGGCA-CC----AAGAUGGGACACCau ||: | || | :|:||:||||| TCTATAGGAGAATGTTGCCTTGTGGcc Senp3; Smt3ip; Smt3ip1 mmu-miR-141 262 291 GGUAGAAAU----GGUC----UGUCACAau |||| || | ||| ||||||| CCATGTTCAGAGGGCAGGAAAACAGTGTgg Senp3; Smt3ip; Smt3ip1 mmu-miR-150 28 49 GUGACCAUGUUCCC-AACCCUCU || ||| :||:||| |||||| CAGTGG-GCAGGGGAAAGGGAGA Senp3; Smt3ip; Smt3ip1 mmu-miR-188 15 43 UGGGA----GGUGGU-A--CGUUCCCUac ||||| |||:|| | |||:|||| ACCCTTAGCCCATCAGTGGGCAGGGGAaa Senp3; Smt3ip; Smt3ip1 mmu-miR-196a 302 323 gguuGUUGUACU-UUGAUGGAu ||| : || |||:||| cgcgCAAAGGGATTACTGCCTg Senp3; Smt3ip; Smt3ip1 mmu-miR-196b 302 323 gguuGUUGUCCU-UUGAUGGAu ||| :||| |||:||| cgcgCAAAGGGATTACTGCCTg Senp3; Smt3ip; Smt3ip1 mmu-miR-204 291 314 guCCGUAUCCUAC-UGUUUCCCUu ||:: ||| | :|||||||| ggGGTGGTGGACGCGCAAAGGGAt Senp3; Smt3ip; Smt3ip1 mmu-miR-204 28 48 GUCCGUAUCC-UACUGUUUCCCUu ||| |:|| | |: ||||||| CAG---TGGGCAGGGGAAAGGGAg Senp3; Smt3ip; Smt3ip1 mmu-miR-210 287 308 agucggCGACAGUGUGCGUGUc | || :: ||||:|| tgtgggGGTGGTGGACGCGCAa Senp3; Smt3ip; Smt3ip1 mmu-miR-211 292 314 uCCGUUUCCUAC-UGUUUCCCUu ||::: ||| | :|||||||| gGGTGGTGGACGCGCAAAGGGAt Senp3; Smt3ip; Smt3ip1 mmu-miR-211 32 48 uCCGUUUCCUACUGUUUCCCUu ||||::|| ||||||| gGGCAGGGG-----AAAGGGAg Senp3; Smt3ip; Smt3ip1 mmu-miR-22 260 281 ugucaAGAAGUUGACCGUCgaa | ||||: ||||| ttccaTGTTCAGAGGGCAGgaa Senp3; Smt3ip; Smt3ip1 mmu-miR-222 218 248 CUCU------GGGUCAUCGG-UCUACAUCGa |||| ||: ||:||| ||:|| ||| GAGAATGTTGCCTTGTGGCCTAGGTGGAGCa Senp3; Smt3ip; Smt3ip1 mmu-miR-24* 12 37 ugacuauAGUCG---AGUCAUCCGUg |:||| |||||:|||| cagacccTTAGCCCATCAGTGGGCAg Senp3; Smt3ip; Smt3ip1 mmu-miR-298 240 263 CCUUCUUGUCGG-GAGGA-GACGG || :||:||||| :|||| || || GGTGGAGCAGCCATTCCTCCTTCC Senp3; Smt3ip; Smt3ip1 mmu-miR-324-3p 280 300 ggUCGUCGUGGACCCCGUCACC | |||:: : ||||::|||| aaAACAGTG-TGGGGGTGGTGG Senp3; Smt3ip; Smt3ip1 mmu-miR-328 258 279 ugccuucccgucUCUCCCGguc ||||||| ccttccatgttcAGAGGGCagg Senp3; Smt3ip; Smt3ip1 mmu-miR-331 224 245 aagauccuauCCGGGUCC-CCg ||||:||| || gttgccttgtGGCCTAGGTGGa Senp3; Smt3ip; Smt3ip1 mmu-miR-339 256 281 acucgAGG-AC----CUCCUGUCCcu ||| || ||||:|||| ctcctTCCATGTTCAGAGGGCAGGaa Senp3; Smt3ip; Smt3ip1 mmu-miR-341 312 332 ugACUGGCUGGCUGGCUAGcu | ||:| |:| |||||| gaTTACTGCCTGCCCGATCtt Senp3; Smt3ip; Smt3ip1 mmu-miR-346 270 303 UCU-CCGUCC----GUGA-GC-----CCGUCUGu ||| |||||| || | :| ||::||| AGAGGGCAGGAAAACAGTGTGGGGGTGGTGGACg Senp3; Smt3ip; Smt3ip1 mmu-miR-34a 297 322 uuguUGGUCGAUUCU---GUGACGGu || || |||: :|||||| gtggACGCGCAAAGGGATTACTGCCt Senp3; Smt3ip; Smt3ip1 mmu-miR-370 9 35 uuGGUCCAAGG--UGGG--GUCGUCCG |||| |: :||| |||::||| ccCCAGACCCTTAGCCCATCAGTGGGC Senp3; Smt3ip; Smt3ip1 mmu-miR-379 72 90 GG--AUGCAAGGUAUCAGAUGGu || | :|||:| |||||| CCTTTTTGTTTC----TCTACCc Senp3; Smt3ip; Smt3ip1 mmu-miR-411 268 290 uGACUCCCAAUCACCUGGCACAa | ||||| :| || |||| tCAGAGGGCAGGAAAACAGTGTg Senp3; Smt3ip; Smt3ip1 mmu-miR-412 225 247 ugCCGAUCACCUGGUCCACUUCa | || |||| |:|||||:|| ttGCCTTGTGGCCTAGGTGGAGc Senp3; Smt3ip; Smt3ip1 mmu-miR-425 308 329 ccgCCU-GUGCUGUAAGGGCUA ||| :|| :| | |||||| aagGGATTACTGCCTGCCCGAT Senp3; Smt3ip; Smt3ip1 mmu-miR-449b 300 322 gguCGAUCGUUAC----GUGACGGA || |||| | :||||||| gacGC--GCAAAGGGATTACTGCCT Senp3; Smt3ip; Smt3ip1 mmu-miR-450 291 311 auaauCCUUGUGUAGCGUUUuu || : ||: |||||| ggggtGGTGGACG-CGCAAAgg Senp3; Smt3ip; Smt3ip1 mmu-miR-450b* 32 60 uaCGUACGUUUUAC-------AAGGGUUa ||| | :||| | ||||||| ggGCAGGGGAAAGGGAGACCCTTCCCAAg Senp3; Smt3ip; Smt3ip1 mmu-miR-468 12 35 GUCUGUGUG-CGUGUAGUCAguau ||||| | : || ||||||| CAGACCCTTAGCCCATCAGTgggc Senp3; Smt3ip; Smt3ip1 mmu-miR-485-5p 178 203 CUUA----AGUAGUGCCGGUCGGAGA |||| ||| | || ||||||| GAATGGCCACATAAAAGCAAGCCTCT Senp3; Smt3ip; Smt3ip1 mmu-miR-488* 234 257 CUGGUU---CUUUGUCGGAAAGuu |:|| | |:|:||||| ||| GGCCTAGGTGGAGCAGCCATTCct Senp3; Smt3ip; Smt3ip1 mmu-miR-490 244 269 gUCGUACCUCAGG----AGGUCCAAc |||| | ||| |||| ||| gAGCAGCCATTCCTCCTTCCATGTTc Senp3; Smt3ip; Smt3ip1 mmu-miR-501 377 400 aaaguGGGUCC--CUGUUUCCUAa |:| || |:||||||| tcctgCTCTGGTCAATAAAGGATc Senp3; Smt3ip; Smt3ip1 mmu-miR-501 28 49 aaaguggGUCCCUGUUUCCUaa |||||: ||:||| cagtgggCAGGGGAAAGGGAga Senp3; Smt3ip; Smt3ip1 mmu-miR-541 383 404 ACACUGGUUGUAGUCUUAGGGAA | ||::|||:| ||:||||:|| TCTGGTCAATA-AAGGATCCTTT Senp3; Smt3ip; Smt3ip1 mmu-miR-652 226 254 ACG---UGUUGGGAUCAC--CG-CGGUAA ||| ::::||: :||| || |||||| TGCCTTGTGGCCTAGGTGGAGCAGCCATT Senp3; Smt3ip; Smt3ip1 mmu-miR-666 299 329 CC-GAGAGUGUC------GAC--ACGGGCga || | | || || ||| |||||| GGACGCGCAAAGGGATTACTGCCTGCCCGat Senp3; Smt3ip; Smt3ip1 mmu-miR-668 26 51 ccaUCACCCGGCUC--GGCUCACUGu ||||||| |:| |:| ||| atcAGTGGGCAGGGGAAAGGGAGACc Senp3; Smt3ip; Smt3ip1 mmu-miR-685 225 256 cACGGAG---UGGA--------GUCGGUAAcu |||||: :||| |||||||| tTGCCTTGTGGCCTAGGTGGAGCAGCCATTcc Senp3; Smt3ip; Smt3ip1 mmu-miR-689 13 43 cCUGGGG--CGG-------CUCG-CCCCUgc |||||: ||| |:|| ||||| aGACCCTTAGCCCATCAGTGGGCAGGGGAaa Senp3; Smt3ip; Smt3ip1 mmu-miR-692 292 314 CUCACU-CC-GCGAGUUUCUCUA |:|||: || ||| |||||:||| GGGTGGTGGACGCGCAAAGGGAT Senp3; Smt3ip; Smt3ip1 mmu-miR-693-3p 178 198 aaUGUCGGUGUAGACUUUCGacg |::|||||| | ||||| gaATGGCCACA--TAAAAGCaag Senp3; Smt3ip; Smt3ip1 mmu-miR-695 313 331 aAGUCAGUGGAUACGGGUUAGA |:| | :|| |||||:|||| aTTACT-GCC--TGCCCGATCT Senp3; Smt3ip; Smt3ip1 mmu-miR-699 302 322 GCUCG-GUCCAGCGUGACGGA || || ||| :||||||| CGCGCAAAGGGATTACTGCCT Senp3; Smt3ip; Smt3ip1 mmu-miR-702 286 303 CUCGCCCCAUUUCCCACCCGu | |:|||| : ||||| | GTGTGGGG---GTGGTGGACg Senp3; Smt3ip; Smt3ip1 mmu-miR-709 198 213 aGGAGGACGGAGACGGAGg ||||:| ||| |||| gCCTCTT---TCTCCCTCt Senp3; Smt3ip; Smt3ip1 mmu-miR-712 375 399 CCAUGGCGGGCCC----ACUUCCUc ||| |:||:| || | ||||| GGTCCTGCTCTGGTCAATAAAGGAt Senp3; Smt3ip; Smt3ip1 mmu-miR-714 370 390 CGCUGGCUGGCCGGGAGCAGc || || | || ||:|| ||| GCCACGGTCCTGCTCTGGTCa Senp3; Smt3ip; Smt3ip1 mmu-miR-719 221 242 UUGUAAAAAGACAUCGGCUCUA ||::|| :|||:||| ||:| AATGTTGCCTTGTGGCCTAGGT Senp3; Smt3ip; Smt3ip1 mmu-miR-761 129 151 ACA-CAGUCAAAGUGGGACGACG ||| |: ||||: :::|||||| TGTATTTTGTTTTTTTTTGCTGC Senp3; Smt3ip; Smt3ip1 mmu-miR-764-3p 221 241 uguCAACGGUGAUACCGGAgga |||||| :|:|||||| aatGTTGCC-TTGTGGCCTagg

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Senp3 RAID00128188 mmu-miR-15a-5p miRNA MIMAT0000526 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID00424007 mmu-miR-195a-5p miRNA MIMAT0000225 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID00436487 mmu-miR-344e-3p miRNA MIMAT0014924 Senp3 mRNA 80886 CLIP-seq 0.5483 Senp3 RAID00691347 mmu-miR-6946-5p miRNA MIMAT0027792 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID00712225 mmu-miR-497a-5p miRNA MIMAT0003453 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID00827669 mmu-miR-1933-3p miRNA MIMAT0009397 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID00978406 mmu-miR-107-3p miRNA MIMAT0000647 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01028994 mmu-miR-298-3p miRNA MIMAT0017007 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01055517 mmu-miR-7047-5p miRNA MIMAT0027998 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01066487 mmu-miR-374b-5p miRNA MIMAT0003727 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01150080 mmu-miR-706 miRNA MIMAT0003496 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01157979 mmu-miR-494-3p miRNA MIMAT0003182 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01358497 mmu-miR-8116 miRNA MIMAT0031422 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01419893 mmu-miR-501-5p miRNA MIMAT0003508 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01519667 mmu-miR-325-3p miRNA MIMAT0004640 Senp3 mRNA 80886 Prediction 0.2202 Senp3 RAID01635246 mmu-miR-3103-5p miRNA MIMAT0014937 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID01943945 mmu-mir-325 miRNA MI0000597 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02011851 mmu-miR-211-5p miRNA MIMAT0000668 Senp3 mRNA 80886 Prediction 0.2202 Senp3 RAID02287049 mmu-miR-322-5p miRNA MIMAT0000548 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02340694 mmu-miR-551b-5p miRNA MIMAT0017236 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02516138 mmu-miR-16-5p miRNA MIMAT0000527 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02544518 mmu-miR-344d-3p miRNA MIMAT0014808 Senp3 mRNA 80886 CLIP-seq 0.5483 Senp3 RAID02740301 mmu-miR-7119-3p miRNA MIMAT0028136 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02791525 mmu-miR-343 miRNA MIMAT0004868 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02866611 mmu-miR-7061-3p miRNA MIMAT0028027 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID02984681 mmu-miR-410-3p miRNA MIMAT0001091 Senp3 mRNA 80886 CLIP-seq//Prediction 0.6478 Senp3 RAID03191009 mmu-miR-3074-5p miRNA MIMAT0014856 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03239615 mmu-miR-15b-5p miRNA MIMAT0000124 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03308747 mmu-miR-379-5p miRNA MIMAT0000743 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03321416 mmu-miR-543-3p miRNA MIMAT0003168 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03346197 mmu-miR-326-3p miRNA MIMAT0000559 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03402334 mmu-miR-7679-3p miRNA MIMAT0029873 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03431512 mmu-miR-6919-5p miRNA MIMAT0027738 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03453675 mmu-miR-330-5p miRNA MIMAT0004642 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03522849 mmu-miR-6965-5p miRNA MIMAT0027830 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03558657 mmu-miR-296-3p miRNA MIMAT0004576 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03590889 mmu-miR-1192 miRNA MIMAT0005850 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03652410 mmu-miR-340-5p miRNA MIMAT0004651 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03655558 mmu-miR-204-5p miRNA MIMAT0000237 Senp3 mRNA 80886 Prediction 0.2202 Senp3 RAID03733505 mmu-miR-103-3p miRNA MIMAT0000546 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03854787 mmu-miR-7235-5p miRNA MIMAT0028438 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03909569 mmu-miR-132-5p miRNA MIMAT0016984 Senp3 mRNA 80886 Prediction 0.1828 Senp3 RAID03979395 mmu-miR-7670-3p miRNA MIMAT0029847 Senp3 mRNA 80886 Prediction 0.1828