DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Ufd1l ATTTA 90-1013 1104-1108;1395-1399;1532-1536;1555-1559;1708-1712;1897-1901 Ufd1l TTATTTATT 90-1013 1553-1561 Ufd1l WTATTTATW 90-1013 1553-1561 Ufd1l WWATTTAWW 90-1013 1553-1561 Ufd1l WWTATTTATWW 90-1013 1552-1562 Ufd1l WWWATTTAWWW 90-1013 1552-1562 Ufd1l WWWTATTTATWWW 90-1013 1551-1563 Ufd1l WWWWATTTAWWWW 90-1013 1551-1563

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT593612 mmu-miR-188-5p Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT603136 mmu-miR-298-5p Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603137 mmu-miR-709 Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603139 mmu-miR-876-5p Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603141 mmu-miR-1195 Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT593613 mmu-miR-1199-5p Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT603135 mmu-miR-1935 Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603140 mmu-miR-3089-5p Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603138 mmu-miR-363-5p Mus musculus Ufd1l 22230 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004537 mmu-miR-154* 22230 Ufd1l uuaUCCAG--UUGGCACAUACUAa || || ||: |||||||| uucAGAUCUGCACUUUGUAUGAUg 2 20 832 855 [mm9:16:18835235-18835258:+] 0.5522 154 7 -11.65 -0.6660 MIMAT0000217 mmu-miR-188-5p 22230 Ufd1l gggaggUGGUACGUUCCCUAc ||: | ||||||| acagugACUCAG-AAGGGAUc 2 16 386 405 [mm9:16:18834789-18834808:+] 0.5197 141 7 -13.90 -0.2169 MIMAT0004542 mmu-miR-191* 22230 Ufd1l cccuugcuuuAGGUUCACG-UCg |:||||||| || uugucuguuuUUCAAGUGCUAGg 2 13 720 742 [mm9:16:18835123-18835145:+] 0.4924 120 0 -15.08 -0.7521 MIMAT0004547 mmu-miR-203* 22230 Ufd1l acaacUUGACA-GUUCUUG-GUGa ::|||| | :|||| ||| ucccuGGCUGUCCUGGAACUCACu 2 18 572 595 [mm9:16:18834975-18834998:+] 0.4976 120 0 -18.68 -0.2708 MIMAT0000367 mmu-miR-291a-5p 22230 Ufd1l ucucucCCGGAGGUGAAAC-UAc | :|| ||||||| || ucuucaGAUCUGCACUUUGUAUg 2 17 830 852 [mm9:16:18835233-18835255:+] 0.5522 124 0 -16.98 -0.5164 MIMAT0000376 mmu-miR-298 22230 Ufd1l cccUUCUUGUCGGGAGGAGACGg || | | ||: ||||||| ucaAAAAUCCACCUGCCUCUGCc 2 21 620 642 [mm9:16:18835023-18835045:+] 0.4976 156 7 -22.57 -0.1501 MIMAT0000376 mmu-miR-298 22230 Ufd1l cccUUCUUGUCGGGAG-GAGACGg ||| |:: | | | |||||| auuAAGCAUGCCACACACUCUGCc 2 21 765 788 [mm9:16:18835168-18835191:+] 0.4924 124 6 -21.93 -0.2019 MIMAT0004624 mmu-miR-15a* 22230 Ufd1l acuccGUC-GUGUCAUACCGGAc ||| || || ||||||| aguacCAGACAAAG-AUGGCCUc 2 18 353 374 [mm9:16:18834756-18834777:+] 0.5207 154 7 -17.13 -0.2863 MIMAT0004625 mmu-miR-16* 22230 Ufd1l agucgUCGUGUCAGUUAUG-ACc :||| | | ||||| || ugaaaGGCAGAAUGAAUACAUGc 2 18 474 496 [mm9:16:18834877-18834899:+] 0.5119 121 0 -11.69 -0.4327 MIMAT0004629 mmu-miR-22* 22230 Ufd1l auuucgAACGGUGACUUCUUGa || ::|:|||||||: gaauaaUUCUUAUUGAAGAAUu 2 17 904 925 [mm9:16:18835307-18835328:+] 0.5710 144 0 -14.36 -0.1429 MIMAT0004656 mmu-miR-345-3p 22230 Ufd1l caGAGGUCUGGG---GAUCAAGUCc :| | |:|:| | ||||||| agUUACUGGCUCUGACAAGUUCAGa 2 21 55 79 [mm9:16:18834458-18834482:+] 0.5442 147 7 -18.01 -0.4734 MIMAT0000605 mmu-miR-350 22230 Ufd1l cuuucacauacccGAAACACUu :||||||: uauuuuuauuuauUUUUGUGGc 2 10 535 556 [mm9:16:18834938-18834959:+] 0.4998 125 0 -6.89 -0.1184 MIMAT0004660 mmu-miR-19a* 22230 Ufd1l caucacgUUGAUACGUUUUGAu ||||: :|||||| uuaaauaAACUGAUUAAAACUc 2 16 924 945 [mm9:16:18835327-18835348:+] 0.5528 139 6 -8.68 -0.2640 MIMAT0004664 mmu-miR-214* 22230 Ufd1l cgugucguucACAUCUG-UCCGu ||||||| |||| gaacucacuuUGUAGACUAGGCu 2 13 587 609 [mm9:16:18834990-18835012:+] 0.4976 124 0 -18.18 -0.2438 MIMAT0004670 mmu-miR-7a* 22230 Ufd1l auaccgucugacacUAAACAAc ||||||| uccagcuauuuaaaAUUUGUUc 2 9 877 898 [mm9:16:18835280-18835301:+] 0.5606 140 7 -5.33 -0.8620 MIMAT0001093 mmu-miR-411* 22230 Ufd1l ccaauCACCUGGCACAAUGUAu || | || ||||||| guaacGU-GCCCCCGUUACAUu 2 18 501 521 [mm9:16:18834904-18834924:+] 0.5119 147 7 -11.74 -0.4913 MIMAT0004217 mmu-miR-465a-3p 22230 Ufd1l agAUGAAUCUU---UCCGGGACUag ||:||| || : |||||| gcUAUUUAAAAUUUGUUCCCUGAga 3 21 881 905 [mm9:16:18835284-18835308:+] 0.5606 131 0 -15.42 -0.3082 MIMAT0002110 mmu-miR-469 22230 Ufd1l ccUGUG-GUUC-UAGUUACUUUCU-CCGu :||| ::|| | ||: ||||| ||| caGCACUUGAGUACCAGACAAAGAUGGCc 2 25 344 372 [mm9:16:18834747-18834775:+] 0.5207 126 0 -14.20 -0.6643 MIMAT0003186 mmu-miR-369-3p 22230 Ufd1l uuUCUAGUUGGUACAUAAUAa | ||: |:: | |||||| uuACAUUUAUUUUUUAUUAUu 2 20 515 535 [mm9:16:18834918-18834938:+] 0.5070 127 6 -4.39 -0.2578 MIMAT0003189 mmu-miR-291b-5p 22230 Ufd1l ccucucCCGGAGGUGAAAC-UAg | :|| ||||||| || ucuucaGAUCUGCACUUUGUAUg 2 17 830 852 [mm9:16:18835233-18835255:+] 0.5522 124 0 -14.00 -0.5164 MIMAT0003190 mmu-miR-291b-3p 22230 Ufd1l uguuuguuuuaccuACGUGAAa ||||||| auugucuucagaucUGCACUUu 2 9 826 847 [mm9:16:18835229-18835250:+] 0.5522 140 7 -10.67 -0.6458 MIMAT0004188 mmu-miR-802 22230 Ufd1l uuccuACUUAGAAACAAUGACu ||: |: ||||||| gcaccUGGCUUACAGUUACUGg 2 18 42 63 [mm9:16:18834445-18834466:+] 0.5875 145 7 -11.59 -0.5028 MIMAT0003896 mmu-miR-763 22230 Ufd1l cggugaccaagaaGGGUCGAcc :|||||| uuugacaugcugaUCCAGCUau 3 10 864 885 [mm9:16:18835267-18835288:+] 0.5606 121 0 -14.29 -0.1129 MIMAT0003897 mmu-miR-759 22230 Ufd1l caguuuuaacaaacGUGAGACg ||||||| uuaagcaugccacaCACUCUGc 2 9 766 787 [mm9:16:18835169-18835190:+] 0.4924 140 7 -15.05 -0.2204 MIMAT0003740 mmu-miR-674 22230 Ufd1l auguGGUGAGGGUAGAGUCACg |::||| | |||||||| uaauCUGCUCGC-UCUCAGUGa 2 19 432 452 [mm9:16:18834835-18834855:+] 0.5158 160 7 -23.00 -0.7642 MIMAT0003470 mmu-miR-691 22230 Ufd1l aaaAGACGGAGAGA-AGUC-CUUa |||| ||| || |||| ||| uaaUCUG-CUCGCUCUCAGUGAAu 2 20 432 454 [mm9:16:18834835-18834857:+] 0.5158 128 0 -21.33 -0.3840 MIMAT0003472 mmu-miR-693-5p 22230 Ufd1l cuuuUGAAAGCCUACACCGAc |:|| : ||||||| uuuuAUUUAUUUUUGUGGCUu 2 18 538 558 [mm9:16:18834941-18834961:+] 0.4998 145 7 -10.84 -1.1659 MIMAT0003472 mmu-miR-693-5p 22230 Ufd1l cuUUUGAA-AGCCUACAC-CGAc :||||| || |||| ||| caGAACUUGGAGGUUGUGUGCUu 2 20 150 172 [mm9:16:18834553-18834575:+] 0.5497 122 0 -17.18 -0.1353 MIMAT0003499 mmu-miR-709 22230 Ufd1l agGAGGACGGAGACGGAGg | |||||||||||||| ucCACCUGCCUCUGCCUCc 2 18 627 645 [mm9:16:18835030-18835048:+] 0.4976 177 7 -39.73 -0.1796 MIMAT0003504 mmu-miR-713 22230 Ufd1l cgACACAC-GGAAG-UCACGu ||| || ::||| ||||| uuUGUCUGUUUUUCAAGUGCu 2 18 719 739 [mm9:16:18835122-18835142:+] 0.4924 124 0 -14.37 -0.5413 MIMAT0004210 mmu-miR-804 22230 Ufd1l agguccacuccuugUUGAGUGu ||||||| ccuggcuguccuggAACUCACu 2 9 574 595 [mm9:16:18834977-18834998:+] 0.4976 140 7 -16.29 -0.2345 MIMAT0004236 mmu-miR-741 22230 Ufd1l agaUGUAUCUUACCGUAGAG-AGu || |||| || ||||| || gugACUCAGAA-GGGAUCUCAUCc 2 21 389 411 [mm9:16:18834792-18834814:+] 0.5197 126 0 -16.27 -0.4020 MIMAT0004237 mmu-miR-742 22230 Ufd1l aaAUGGGUCGUACCACCGAAAg ||:::| : | |||||||| uuUAUUUAUUUUUGUGGCUUUu 2 21 539 560 [mm9:16:18834942-18834963:+] 0.4998 160 7 -14.93 -0.6663 MIMAT0004238 mmu-miR-743a 22230 Ufd1l agAUGAGUCGAAC--CACAGAAAg |::||| || |||||||| ucUGUUCAUGGUGCAGUGUCUUUa 2 21 299 322 [mm9:16:18834702-18834725:+] 0.5101 155 7 -19.29 -0.1603 MIMAT0004840 mmu-miR-743b-3p 22230 Ufd1l agAUAAGUCGUAC--UACAGAAAg |:|||| :|| :||||||| ucUGUUCAUGGUGCAGUGUCUUUa 2 21 299 322 [mm9:16:18834702-18834725:+] 0.5101 159 7 -18.63 -0.1603 MIMAT0004850 mmu-miR-883b-5p 22230 Ufd1l acugacGAUGGGUAAGAGUCAu ||:|:|: ||||||| uuuaauCUGCUCGCUCUCAGUg 2 17 430 451 [mm9:16:18834833-18834854:+] 0.5197 160 7 -23.70 -0.1774 MIMAT0004856 mmu-miR-105 22230 Ufd1l ugGUGUUCGU-AGAC---UCGUGAACc ||::: :| || | |||||||| auCAUGGCUACUCAGGCCAGCACUUGa 2 22 327 353 [mm9:16:18834730-18834756:+] 0.5154 147 7 -17.23 -0.4650 MIMAT0004872 mmu-miR-465b-3p 22230 Ufd1l agAUGAAUCUU---UCCGGGACUag ||:||| || : |||||| gcUAUUUAAAAUUUGUUCCCUGAga 3 21 881 905 [mm9:16:18835284-18835308:+] 0.5606 131 0 -15.42 -0.3082 MIMAT0004874 mmu-miR-465c-3p 22230 Ufd1l agAUGAAUCUU---UCCGGGACUag ||:||| || : |||||| gcUAUUUAAAAUUUGUUCCCUGAga 3 21 881 905 [mm9:16:18835284-18835308:+] 0.5606 131 0 -15.42 -0.3082 MIMAT0004893 mmu-miR-574-5p 22230 Ufd1l ugUGUGAGU-GUGU-GUGUGUGAGu |:|:| | ||:: ||||||||| gaAUAUUAAGCAUGCCACACACUCu 2 22 761 785 [mm9:16:18835164-18835188:+] 0.4924 163 7 -21.10 -0.1752 MIMAT0004930 mmu-miR-466d-5p 22230 Ufd1l guACAUGUA---CAUGC-GUGUGUGu || |:|| | |:| ||||||| cgUGAAUAUUAAGCAUGCCACACACu 2 21 758 783 [mm9:16:18835161-18835186:+] 0.4924 150 7 -17.69 -0.1920 MIMAT0004933 mmu-miR-878-3p 22230 Ufd1l agAUGGGUCACACCAC-AGUACg | |||| ||| || ||||| cuUCCCCA-UGU-CUGUUCAUGg 2 21 289 309 [mm9:16:18834692-18834712:+] 0.5101 120 0 -14.15 -0.1495 MIMAT0004940 mmu-miR-511 22230 Ufd1l acucacGUCU-CGUUUUCCGUa |||| ::||||||| ugaagcCAGAUAUGAAAGGCAg 2 16 462 483 [mm9:16:18834865-18834886:+] 0.5119 150 7 -13.94 -0.3835 MIMAT0005830 mmu-miR-466l 22230 Ufd1l uuAUACACACGUACAUAAAUAu ||| | : | ||||||| uuUAUUAUUAUUUUUAUUUAUu 2 21 527 548 [mm9:16:18834930-18834951:+] 0.5020 148 7 -2.38 -1.1984 MIMAT0005830 mmu-miR-466l 22230 Ufd1l uuauacacacguAC-AUAAAUAu || ||||||| ucagagauacucUGUUAUUUAUg 2 11 75 97 [mm9:16:18834478-18834500:+] 0.5442 141 7 -9.48 -0.6466 MIMAT0005845 mmu-miR-466k 22230 Ufd1l agUGUACAU-GUACAUGUGUGUGu |:|| | |||| ||||||| gaAUAUUAAGCAUG-CCACACACu 2 22 761 783 [mm9:16:18835164-18835186:+] 0.4924 154 7 -16.61 -0.1974 MIMAT0005848 mmu-miR-466j 22230 Ufd1l aaugugUGUACGU-GUAC-GUGUGu |:|| | |||| ||||| ucgugaAUAUUAAGCAUGCCACACa 2 18 757 781 [mm9:16:18835160-18835184:+] 0.4924 120 0 -17.53 -0.5770 MIMAT0005860 mmu-miR-1199 22230 Ufd1l ggcgcgcUGGCCCUGAGUCu || | ||||||| uuuauuuACAGUGACUCAGa 2 14 379 398 [mm9:16:18834782-18834801:+] 0.5202 149 7 -16.21 -0.7469 MIMAT0007868 mmu-miR-1903 22230 Ufd1l acagaguccuucuuCUUCUUcc |||||| gaauaauucuuauuGAAGAAuu 3 9 904 925 [mm9:16:18835307-18835328:+] 0.5710 120 0 -6.83 -0.1471 MIMAT0007873 mmu-miR-1896 22230 Ufd1l gagGAGUGGGUGGUAGUCUCUc ||| || ||||||| uggCUCUGACAAGUUCAGAGAu 2 20 61 82 [mm9:16:18834464-18834485:+] 0.5442 147 7 -16.23 -0.5836 MIMAT0007874 mmu-miR-1904 22230 Ufd1l ggagggAGGUCUCCUCGUCUUg | || || ||||||| ccuggaUACAAAGCAGCAGAAc 2 17 134 155 [mm9:16:18834537-18834558:+] 0.5497 156 7 -18.32 -0.1900 MIMAT0009399 mmu-miR-1935 22230 Ufd1l ucUCUAGGCGGUCGGAGACGGa | |||| || ||||||||| aaAAAUCCACCUGCCUCUGCCu 2 21 622 643 [mm9:16:18835025-18835046:+] 0.4976 176 7 -31.55 -0.1164 MIMAT0009399 mmu-miR-1935 22230 Ufd1l ucUC-UAGGCGGUCGGAGACGGa || || | || ||||||| uaAGCAUGCCACACACUCUGCCa 2 21 767 789 [mm9:16:18835170-18835192:+] 0.4924 151 7 -21.55 -0.4727 MIMAT0009409 mmu-miR-1944 22230 Ufd1l uuagucuuGAACUGUAAGUCGU-GUCUc || ||:| |||| |||| agcuugucCUGGAUACAAAGCAGCAGAa 2 20 127 154 [mm9:16:18834530-18834557:+] 0.5497 123 0 -13.09 -0.5903 MIMAT0009421 mmu-miR-669o 22230 Ufd1l uguAUUUGUACGUGUGUGU-UGAu |||:||||| |||| ||| uauUAAGCAUGC---CACACACUc 2 21 764 784 [mm9:16:18835167-18835187:+] 0.4924 128 0 -20.80 -0.1361 MIMAT0009435 mmu-miR-1962 22230 Ufd1l uacaCAGGGUCACGGUCGGAGa | ||| | ||||||| ucagGGCCC--UCACAGCCUCa 2 19 237 256 [mm9:16:18834640-18834659:+] 0.4904 143 7 -19.04 -0.1166 MIMAT0009459 mmu-miR-1982* 22230 Ufd1l ggaGGGGUCCUGGGAGGGUu ||:| | ||||||| cugCCUCUG---CCUCCCAa 2 18 632 648 [mm9:16:18835035-18835051:+] 0.4976 141 7 -21.14 -0.3139 MIMAT0011214 mmu-miR-2138 22230 Ufd1l uaaggcggUUCGGGCAAGGGAa || :::||||||| gcuauuuaAAAUUUGUUCCCUg 2 15 881 902 [mm9:16:18835284-18835305:+] 0.5606 150 7 -15.70 -1.1324 MIMAT0011214 mmu-miR-2138 22230 Ufd1l uaaggcGGUUCGG--GCAAGGGAa :|||| | ||||||| ggcuuuUCAAGACAGAGUUCCCUg 2 17 554 577 [mm9:16:18834957-18834980:+] 0.4976 147 7 -17.48 -0.2270 MIMAT0012773 mmu-miR-767 22230 Ufd1l acgagucuguuGGUACCACGu :|||||||| cccaugucuguUCAUGGUGCa 2 11 293 313 [mm9:16:18834696-18834716:+] 0.5101 146 7 -18.86 -0.2989 MIMAT0012774 mmu-miR-664 22230 Ufd1l auccgacCCCUCAUUUACUUAu || || ||||||| uaugaaaGGCAG--AAUGAAUa 2 16 472 491 [mm9:16:18834875-18834894:+] 0.5119 144 7 -10.42 -0.5123 MIMAT0015642 mmu-miR-3471 22230 Ufd1l uuACGGAAUGUCAACCUAGAGu || || | | ||||||| agUGACUCAGA-AGGGAUCUCa 2 21 388 408 [mm9:16:18834791-18834811:+] 0.5197 146 7 -19.77 -0.6695 MIMAT0000139 mmu-miR-127 22230 Ufd1l ucgguucgagucugcCUAGGCu |||||| gacuggaaaauaaaaGAUCCGa 2 8 18 39 [mm9:16:18834421-18834442:+] 0.6308 120 6 -12.44 -0.1438 MIMAT0000157 mmu-miR-145 22230 Ufd1l ucccuaaggACCCUUUUGACCUg | || :|||||| cuaaaacugUUGGCUGACUGGAa 2 15 3 25 [mm9:16:18834406-18834428:+] 0.6774 130 6 -15.99 -0.1032 MIMAT0000385 mmu-miR-106a 22230 Ufd1l gaUGGACGUGACAAUCGUGAAAc ::|| || | ||||||| uuGUCUUCA-GAUCUGCACUUUg 2 22 827 848 [mm9:16:18835230-18835251:+] 0.5522 143 7 -16.46 -0.8437 MIMAT0000386 mmu-miR-106b 22230 Ufd1l uaGACGUGACAGUCGUGAAAu || || || ||||||| guCUUCA-GAUCUGCACUUUg 2 20 829 848 [mm9:16:18835232-18835251:+] 0.5522 149 7 -14.81 -0.8437 MIMAT0000516 mmu-miR-148a 22230 Ufd1l ugUUUCAAGACAUCACGU-GACu |||| || | | |||| ||| uaAAAGAUCCG-AUUGCACCUGg 2 21 28 49 [mm9:16:18834431-18834452:+] 0.5875 126 0 -11.47 -0.8168 MIMAT0000527 mmu-miR-16 22230 Ufd1l gcGGUUAUAAAUGCACGA-CGAu |: || || |: |||| ||| cuCUCAUUUUAAUCUGCUCGCUc 2 21 423 445 [mm9:16:18834826-18834848:+] 0.5197 124 0 -8.67 -0.6289 MIMAT0000529 mmu-miR-20a 22230 Ufd1l gaUGGACGUGAUAUUCGUGAAAu ::|| || || ||||||| uuGUCUUCA-GAUCUGCACUUUg 2 22 827 848 [mm9:16:18835230-18835251:+] 0.5522 151 7 -15.94 -0.8437 MIMAT0000540 mmu-miR-93 22230 Ufd1l gaUGGACGUGCUUGUCGUGAAAc ::|| || || | ||||||| uuGUCUUCA-GAUCUGCACUUUg 2 22 827 848 [mm9:16:18835230-18835251:+] 0.5522 159 7 -19.95 -0.8437 MIMAT0004642 mmu-miR-330 22230 Ufd1l cgGAUUCUGUGUCCGGGUCUCu :||| |: :: ||| ||| auUUAAAAUUUGUUCCCUGAGa 2 21 884 905 [mm9:16:18835287-18835308:+] 0.5606 120 0 -14.72 -0.1022 MIMAT0000649 mmu-miR-17 22230 Ufd1l gaUGGACGUGACAUUCGUGAAAc ::|| || | ||||||| uuGUCUUCA-GAUCUGCACUUUg 2 22 827 848 [mm9:16:18835230-18835251:+] 0.5522 143 7 -16.46 -0.8437 MIMAT0000665 mmu-miR-223 22230 Ufd1l acccCAUAAACUGUUUGACUGu | ||| |:|||||||: ugaaGAAUUAAAUAAACUGAUu 2 19 917 938 [mm9:16:18835320-18835341:+] 0.5814 146 0 -11.21 -0.3429 MIMAT0001542 mmu-miR-449a 22230 Ufd1l uggUCGA-UUGUUAUGU-GACGGu | || || ||| || ||||| uugAACUCAAAAAUCCACCUGCCu 2 20 614 637 [mm9:16:18835017-18835040:+] 0.4976 126 0 -10.87 -0.1820 MIMAT0003128 mmu-miR-485 22230 Ufd1l cuuaaGUAGUGCCG-----GUCGGAGa | ||| ||| ||||||| uccagCUUCAGGGCCCUCACAGCCUCa 2 18 230 256 [mm9:16:18834633-18834659:+] 0.5095 144 7 -20.44 -0.1325 MIMAT0003187 mmu-miR-20b 22230 Ufd1l gaUGGACGUGAUACUCGUGAAAc ::|| || || ||||||| uuGUCUUCA-GAUCUGCACUUUg 2 22 827 848 [mm9:16:18835230-18835251:+] 0.5522 151 7 -18.03 -0.8437 MIMAT0003727 mmu-miR-374 22230 Ufd1l gugaaucguccAACAUAAUAua || |||||| uuacauuuauuUUUUAUUAUua 3 12 515 536 [mm9:16:18834918-18834939:+] 0.5070 127 0 -4.97 -0.3529 MIMAT0003456 mmu-miR-495 22230 Ufd1l uucuuCACGUGGUA-CAAACAAa || ::|| ||||||| acucuGUUAUUUAUGGUUUGUUu 2 18 83 105 [mm9:16:18834486-18834508:+] 0.5442 144 7 -9.42 -0.7589 MIMAT0004896 mmu-miR-590-3p 22230 Ufd1l ugaucgaauAUGUAUUUUAAu ||: ||||||| ugauccagcUAUUUAAAAUUu 2 13 874 894 [mm9:16:18835277-18835297:+] 0.5606 148 7 -6.34 -0.8122 MIMAT0005850 mmu-miR-1192 22230 Ufd1l uuAAACCAGACA-AACAAACAAa | || | | | | ||||||| acUCUGUUAUUUAUGGUUUGUUu 2 21 83 105 [mm9:16:18834486-18834508:+] 0.5442 151 7 -12.44 -0.7553

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052948 Ufd1l Mus musculus 22230

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ufd1l mmu-miR-188-5p beg:387 end:405 pic:3' GGGAGGTG-GTACGTTCCCTAC 5'& . || || ||||||| &5' ----TGACTCAG--AAGGGAT- 3' Ufd1l mmu-miR-295 beg:333 end:352 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& |||||.. ||||||| &5' --ACTCAGGCC----AGCACTT- 3' Ufd1l mmu-miR-15astar beg:355 end:374 pic:3' ACTCCGTC-GTGTCATACCGGAC 5'& ||| || || ||||||| &5' -----CAGACAAAG-ATGGCCT- 3' Ufd1l mmu-miR-466d-5p beg:767 end:783 pic:3' GTACATGTACATGCGTGTGTGT 5'& .|||| | ||||||| &5' -----GCATG--C-CACACAC- 3' Ufd1l mmu-miR-466k beg:767 end:783 pic:3' AGTGTACATGTACATGTGTGTGT 5'& .|||| ||||||| &5' --------GCATGC-CACACAC- 3' Ufd1l mmu-miR-759 beg:777 end:788 pic:3' CAGTTTTAACAAACGTGAGACG 5'& |||||||| &5' --------------CACTCTGC 3' Ufd1l mmu-miR-34a beg:665 end:682 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& || ||||||| &5' -------GCGCCACCACTGCC- 3' Ufd1l mmu-miR-34b-5p beg:665 end:682 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& || ||||||| &5' -------GCGCCAC-CACTGCC- 3' Ufd1l mmu-miR-34c beg:665 end:682 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || | ||||||| &5' -------GCGC-CACCACTGCC- 3' Ufd1l mmu-miR-449a beg:665 end:682 pic:3' TGGTCGATTGTTATGTGACGGT 5'& || || ||||||| &5' ----GCGC-CAC--CACTGCC- 3' Ufd1l mmu-miR-449b beg:665 end:682 pic:3' CGGTCGATTGTTGTGACGGA 5'& || || ||||||| &5' ----GCGC-CACCACTGCC- 3' Ufd1l mmu-miR-1962 beg:237 end:256 pic:3' TACACAGGGTCACGGTCGGAGA 5'& | ||| ||||||| &5' --GGG-CCCTCA--CAGCCTC- 3' Ufd1l mmu-miR-298 beg:628 end:643 pic:3' CCCTTCTTGTCGGGA-GGAGACGG 5'& ||| |||||||| &5' ------------CCTGCCTCTGCC 3' Ufd1l mmu-miR-674 beg:433 end:452 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& | ||| | |||||||| &5' ----CTGCTCGC-TCTCAGTG- 3' Ufd1l mmu-miR-709 beg:624 end:646 pic:3' AGGAGGACGGAGACGGAGG 5'& ||| ||||||||||||||| &5' TCCACCTGCCTCTGCCTCC 3' Ufd1l mmu-miR-105 beg:334 end:353 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& | ||.|| |||||||| &5' --CTCAGGCC----AGCACTTG- 3' Ufd1l mmu-miR-3471 beg:392 end:409 pic:3' TTACGGAATGTCAA-CCTAGAGT 5'& ||| |||||||| &5' ---------CAGAAGGGATCTCA 3' Ufd1l mmu-miR-411star beg:503 end:521 pic:3' CCAATCACCTGGCACAATGTAT 5'& ||| || ||||||| &5' -----GTGCCCCC-GTTACAT- 3' Ufd1l mmu-miR-802 beg:53 end:64 pic:3' TTCCTACTTAGAAACAATGACT 5'& |||||||. &5' --------------GTTACTGG 3' Ufd1l mghv-miR-M1-3 beg:337 end:359 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& |.|| ||.| |.|| .||| &5' AGGC-CAGCACTTGAGTACC-- 3' Ufd1l mmu-let-7a beg:627 end:643 pic:3' TTGATATGT-TGGATGATGGAGT 5'& || .||| ||.|||| &5' ------ACCTGCCT-CTGCCTC- 3' Ufd1l mmu-let-7b beg:625 end:643 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& |||| | .||| ||.|||| &5' --CCAC-CTGCCT-CTGCCTC- 3' Ufd1l mmu-let-7c beg:625 end:643 pic:3' TTGGTATGTTGGATGATGGAGT 5'& ||| .||| ||.|||| &5' --CCACCT-GCCT-CTGCCTC- 3' Ufd1l mmu-let-7d beg:625 end:640 pic:3' TTGATACGTTGGATGATGGAGA 5'& || ||.||||| &5' ----------CCACCTGCCTCT 3' Ufd1l mmu-let-7e beg:614 end:639 pic:3' TTGATATGTT-GGAGGATGGAGT 5'& |||| || |||.|||| &5' AACTCAAAAATCCACCTGCCTC- 3' Ufd1l mmu-let-7f beg:622 end:639 pic:3' TTGATATGTTAGAT-GATGGAGT 5'& |||| ||.|||| &5' --------AATCCACCTGCCTC- 3' Ufd1l mmu-let-7g beg:629 end:639 pic:3' TTGACATGTTTGATGATGGAGT 5'& ||.|||| &5' --------------CTGCCTC- 3' Ufd1l mmu-let-7i beg:626 end:643 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||| .| ||.|||| &5' -----CACCTGCCTCTGCCTC- 3' Ufd1l mmu-miR-1186 beg:330 end:352 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||. ||||||||. &5' ---GCTACTCAGGCCAGCACTT 3' Ufd1l mmu-miR-1188 beg:271 end:297 pic:3' AGGACCGGGTT-GGAGT-GTGGT 5'& ||||| |.|| |.|| | ||| &5' TCCTGACTCACTCTTCTTCCCCA 3' Ufd1l mmu-miR-1193 beg:202 end:215 pic:3' CTATCATTTTGC-CCACTGGAT 5'& | ||||.||| &5' -----------GTGGTGGCCT- 3' Ufd1l mmu-miR-1195 beg:565 end:594 pic:3' ACTCGT----CCGACCGGAGCTTGAGT 5'& |||. ||||| ||| ||||||| &5' -GAGTTCCCTGGCTGTCCTGGAACTCA 3' Ufd1l mmu-miR-1195 beg:598 end:623 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || .||||||||||.||||||| &5' -GACTAGGCTGGCCTTGAACTCA 3' Ufd1l mmu-miR-122 beg:764 end:786 pic:3' GTTTG--TGGTAACAGTGTGAGGT 5'& .||.| .||| |||||||. &5' TAAGCATGCCA----CACACTCT- 3' Ufd1l mmu-miR-1224 beg:624 end:643 pic:3' GAGGTGGA-GGGGTCAGGAGTG 5'& ||||||| ||.| |||| &5' -TCCACCTGCCTCTG-CCTC-- 3' Ufd1l mmu-miR-125b-5p beg:233 end:243 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& .|||||| &5' --------------TTCAGGG- 3' Ufd1l mmu-miR-129-5p beg:607 end:627 pic:3' CGTTCGGGTCTGGCGTTTTTC 5'& .|||. || | |||||| &5' ---GGCCTTGAACTCAAAAA- 3' Ufd1l mmu-miR-130bstar beg:176 end:189 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& .||||.|||| &5' -----------GGGGAGAGAG- 3' Ufd1l mmu-miR-136star beg:442 end:465 pic:3' TTCTGAGTAAACTC----TGCTACTA 5'& |||| ||| |.||||| &5' ----CTCAG-TGAATTCCATGATGA- 3' Ufd1l mmu-miR-139-5p beg:581 end:603 pic:3' GACCTCT-GTGCACGTGACATCT 5'& ||||| ||| .|||||| &5' CTGGAACTCACT----TTGTAGA 3' Ufd1l mmu-miR-150 beg:164 end:184 pic:3' GTGAC-CATGTTCCCAACCCTCT 5'& | ||.| | ||||.|| &5' ----GTGTGCTTGATCTGGGGGA 3' Ufd1l mmu-miR-154 beg:357 end:374 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& .||| |||..||| &5' -------GACAAAGATGGCCT- 3' Ufd1l mmu-miR-154star beg:835 end:855 pic:3' TTATCCAGT--TGGCACATACTAA 5'& || ||. |||||||| &5' ------TCTGCACTTTGTATGAT- 3' Ufd1l mmu-miR-1839-5p beg:627 end:643 pic:3' GTTCTGGACAAGATAGATGGAA 5'& ||||| |||.||| &5' ----ACCTGCC---TCTGCCT- 3' Ufd1l mmu-miR-1894-5p beg:166 end:187 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& || |.|||||||| &5' ----GCTTGATCTGGGGGAGAG 3' Ufd1l mmu-miR-1896 beg:62 end:82 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& ||| || ||||||| &5' ---CTCTGACAAGTTCAGAGA- 3' Ufd1l mmu-miR-1902 beg:830 end:848 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||| ||||||.|. &5' ---TCAGAT---CTGCACTTT- 3' Ufd1l mmu-miR-1904 beg:464 end:487 pic:3' GGAGGGAGGTCTCC-----TCGTCTTG 5'& ||||| .||||||. &5' -------CCAGATATGAAAGGCAGAAT 3' Ufd1l mmu-miR-1904 beg:130 end:156 pic:3' GGAGGGAG---GTCTCCTCGTCTTG 5'& |||. || || |||||||| &5' --TCCTGGATACAAAGCAGCAGAAC 3' Ufd1l mmu-miR-1929 beg:125 end:140 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||. |||||.|| &5' ----GCTT------GTCCTGGA- 3' Ufd1l mmu-miR-1929 beg:567 end:590 pic:3' GAGACGAGATATTT-CAGGATCTT 5'& |.|| |.. |||||.||| &5' ----GTTCCCTGGCTGTCCTGGAA 3' Ufd1l mmu-miR-1931 beg:834 end:852 pic:3' CGGTAGCGTGGTCG-GGAACGTA 5'& |.| || |.|||.|| &5' --------ATCTGCACTTTGTAT 3' Ufd1l mmu-miR-1933-5p beg:447 end:463 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& .|||. ||||||. &5' ----------TGAATTCCATGAT- 3' Ufd1l mmu-miR-1933-5p beg:320 end:335 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& .|| ||.||||.|| &5' --------GCC---CATCATGGCT 3' Ufd1l mmu-miR-1935 beg:623 end:643 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& |||| || |||||||||| &5' ----ATCCACCTGCCTCTGCCT 3' Ufd1l mmu-miR-1935 beg:770 end:789 pic:3' TCTCTAGGCGGTCG--GAGACGGA 5'& .|||| ||||||| &5' -------TGCCACACACTCTGCC- 3' Ufd1l mmu-miR-1935 beg:356 end:380 pic:3' TCTCTAGG--CGGTCGGAGACGGA 5'& ||| | | .|||||||..| &5' --AGA-CAAAGATGGCCTCTGTTT 3' Ufd1l mmu-miR-1937a beg:646 end:660 pic:3' ACCCCCGAGCA-GGCCCTAA 5'& || |.|||||| &5' ---------GTGCTGGGATT 3' Ufd1l mmu-miR-1946a beg:657 end:684 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& |||.||||| |||||||||||||| &5' AAAGGTGTGCGCCACCACTGCCCG--- 3' Ufd1l mmu-miR-1946a beg:665 end:693 pic:3' TTTTCACACACGGTGGTGACGGGC------CGA 5'& ||| |||||||||||||| ||| &5' ------GTGCGCCACCACTGCCCGCCCTCCGCT 3' Ufd1l mmu-miR-1946b beg:667 end:684 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& | |||||||||||||| &5' --------GCGCCACCACTGCCCG-- 3' Ufd1l mmu-miR-1946b beg:657 end:684 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& |||.|..|| |||||||||||||| &5' AAAGGTGTGCGCCACCACTGCCCG-- 3' Ufd1l mmu-miR-1950 beg:293 end:315 pic:3' ACTGGTATAGGAAT---CTACGTCT 5'& ||||.||. |.||||| &5' ---CCATGTCTGTTCATGGTGCAG- 3' Ufd1l mmu-miR-1955 beg:637 end:660 pic:3' TTTTCGACGTCACG--TAGGACCCTGA 5'& |||| .| ||||||.| &5' -----CTGCCTCCCAAGTGCTGGGATT 3' Ufd1l mmu-miR-1957 beg:779 end:793 pic:3' CAGTATACGAGATGGTGAC 5'& ||||.|||||| &5' --------CTCTGCCACTG 3' Ufd1l mmu-miR-1961 beg:629 end:639 pic:3' AAGATTGATGATGGAGT 5'& ||.|||| &5' ---------CTGCCTC- 3' Ufd1l mmu-miR-1962 beg:219 end:239 pic:3' TACACAGGGTCAC-GGTCGGAGA 5'& |||| |||||.|| &5' -----TCCCTAACTCCAGCTTC- 3' Ufd1l mmu-miR-1967 beg:282 end:307 pic:3' CGTAGAAG-AGGGGT-CCTAGGAGT 5'& ||||| |||||| | | .||| &5' ---TCTTCTTCCCCATGTCTGTTCA 3' Ufd1l mmu-miR-1971 beg:334 end:352 pic:3' AGAGTCGGGTCG-GAAATG 5'& ||||| ||||| ||| &5' -CTCAGGCCAGCACTT--- 3' Ufd1l mmu-miR-1982star beg:628 end:649 pic:3' GGA-GGGGTCCTGGGAGGGTT 5'& ||| ||.| |||||||| &5' CCTGCCTCTG---CCTCCCAA 3' Ufd1l mmu-miR-20astar beg:298 end:316 pic:3' GAAATTCACGAGCATTACGTCA 5'& ||.|| |..|||||| &5' -------TGTTCATGGTGCAGT 3' Ufd1l mmu-miR-2132 beg:617 end:637 pic:3' GTAGCGCAGTT-----GTGGGCGG 5'& |||| ||||.||| &5' -------TCAAAAATCCACCTGCC 3' Ufd1l mmu-miR-2140 beg:823 end:847 pic:3' TGGTGGT--TCTAGACGTGGA 5'& |. .| ||||||||||.| &5' ATTGTCTTCAGATCTGCACTT 3' Ufd1l mmu-miR-2140 beg:117 end:137 pic:3' TGGTGGTTCTAGACGTGGA 5'& ||.|.|||| .||. ||| &5' ACTATCAAGC-TTGT-CCT 3' Ufd1l mmu-miR-216a beg:642 end:661 pic:3' AGTGTCAACGGT---CGACTCTAAT 5'& ||| ||||.||||| &5' ---------CCAAGTGCTGGGATTA 3' Ufd1l mmu-miR-217 beg:295 end:317 pic:3' AGGTCAGTCAAGGACTACGTCAT 5'& ||| |||| ||.||||||. &5' ----GTCTGTTCATGGTGCAGTG 3' Ufd1l mmu-miR-222 beg:590 end:613 pic:3' TGGGTCATC-GGTCTACATCGA 5'& ||. |||| |.||. |.|| &5' ACTTTGTAGACTAGGC-TGGC- 3' Ufd1l mmu-miR-22star beg:782 end:799 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& |||||||||.| | &5' -------TGCCACTGAGGCTC- 3' Ufd1l mmu-miR-25 beg:295 end:317 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& | |.| .|||||.|| &5' ---GTCTGTTCATGGTGCAGTG 3' Ufd1l mmu-miR-2861 beg:625 end:643 pic:3' GGCGGGCGGCGGTCCGGGG 5'& || ||.||| |. |||.| &5' CCACCTGCCTCT--GCCTC 3' Ufd1l mmu-miR-2861 beg:674 end:695 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.||||||| |. || | &5' CTGCCCGCC-CTCCGCTAC 3' Ufd1l mmu-miR-291b-3p beg:831 end:848 pic:3' TGTTTGTTTTACCTACGTGAAA 5'& ||.| |||||||| &5' -----CAGATC---TGCACTTT 3' Ufd1l mmu-miR-29bstar beg:448 end:471 pic:3' ATTTGGTGGTA-TACTTTGGTCG 5'& |.||.. |||| |||||.|||| &5' TGAATT-CCATGATGAAGCCAG- 3' Ufd1l mmu-miR-300 beg:832 end:853 pic:3' CTTCTCTCGAACG-GGAACGTAT 5'& ||| | ||| |.|||.||. &5' ----AGATC-TGCACTTTGTATG 3' Ufd1l mmu-miR-302b beg:332 end:353 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& ||||| |..| |||||||. &5' CTACTCAGGCC----AGCACTTG 3' Ufd1l mmu-miR-302d beg:332 end:353 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& .|||||..| |||||||. &5' -TACTCAGGCC----AGCACTTG 3' Ufd1l mmu-miR-32 beg:306 end:317 pic:3' ACGTTGAATCATTACACGTTAT 5'& |||||.|. &5' --------------GTGCAGTG 3' Ufd1l mmu-miR-330 beg:65 end:82 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |||| |..|||||| &5' ------GACAA--GTTCAGAGA 3' Ufd1l mmu-miR-338-3p beg:640 end:657 pic:3' GTTGTTTTAGTGACTACGACCT 5'& || | .||||||. &5' --------TCCCAAGTGCTGGG 3' Ufd1l mmu-miR-345-3p beg:59 end:79 pic:3' CAGAGGTCTGGGGA---TCAAGTCC 5'& |.|.|. ||||||| &5' -------GGCTCTGACAAGTTCAG- 3' Ufd1l mmu-miR-3475 beg:825 end:838 pic:3' AAGTTTGGTACACGGAGGTCT 5'& ||.||.|||| &5' -----------TGTCTTCAGA 3' Ufd1l mmu-miR-361 beg:698 end:719 pic:3' CATGGGGACCTCTAAGACTATT 5'& ||||| ||.|||||||.. &5' -TACCCA---AGGTTCTGATGG 3' Ufd1l mmu-miR-363 beg:303 end:316 pic:3' ATGTCTACCTATGGCACGTTAA 5'& |. |||||.| &5' -----------ATGGTGCAGT- 3' Ufd1l mmu-miR-367 beg:298 end:316 pic:3' AGTGGTAACGATT-TCACGTTAA 5'& ||.| .|||||.| &5' -------TGTTCATGGTGCAGT- 3' Ufd1l mmu-miR-379 beg:767 end:790 pic:3' GGATGCAAGGTATC--AGATGGT 5'& .| ||| |||.||| &5' ---GCATGCCACACACTCTGCCA 3' Ufd1l mmu-miR-381 beg:831 end:853 pic:3' TGTCTCTCGAACG-GGAACATAT 5'& |||| | ||| |.||||||. &5' -CAGAT--C-TGCACTTTGTATG 3' Ufd1l mmu-miR-421 beg:0 end:16 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |.|.|| ||||||. &5' --GTCTAAAA-----CTGTTGG- 3' Ufd1l mmu-miR-431 beg:548 end:568 pic:3' ACGTACTGCCGGAC-GTTCTGT 5'& || .|||.| ||||||| &5' ----TG-TGGCTTTTCAAGACA 3' Ufd1l mmu-miR-449c beg:660 end:682 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& .|. ||. ||||||| &5' --GGTGTGCGCCACCACTGCC- 3' Ufd1l mmu-miR-452 beg:587 end:604 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||| ||.||.|.|| &5' --CTCA-----CTTTGTAGAC- 3' Ufd1l mmu-miR-463 beg:708 end:729 pic:3' GATGGAATATACCA--CAGATAGT 5'& .|| ||||| ||||.|. &5' ---TCTG--ATGGTTTGTCTGTT- 3' Ufd1l mmu-miR-467e beg:502 end:525 pic:3' TGTATATGTACG-----AGTGTGAATA 5'& ||.||| |.|||.|||| &5' ------ACGTGCCCCCGTTACATTTAT 3' Ufd1l mmu-miR-485star beg:832 end:855 pic:3' CTCTCCTCTCGGC-----ACATACTGA 5'& ||| |.| |||||||. &5' ------AGATCTGCACTTTGTATGAT- 3' Ufd1l mmu-miR-488 beg:549 end:564 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& . ||.|||||| &5' ---------GTGGCTTTTCAA 3' Ufd1l mmu-miR-491 beg:277 end:298 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& |||| |||||||. &5' -CTCACTCTTC--TTCCCCAT- 3' Ufd1l mmu-miR-496 beg:70 end:87 pic:3' CTCTAACCGGTACATTATGAGT 5'& | || .|||||| &5' ------GTTCAGA-GATACTC- 3' Ufd1l mmu-miR-511 beg:463 end:483 pic:3' ACTCAC-GTCTCG-TTTTCCGTA 5'& | |||| .||||||| &5' -----GCCAGATATGAAAGGCA- 3' Ufd1l mmu-miR-574-5p beg:764 end:785 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& .| ||..| ||||||||| &5' ---TAAGCATGC-CACACACTC- 3' Ufd1l mmu-miR-592 beg:125 end:145 pic:3' TGTAGTAGCGTATAA---CTGTGTTA 5'& || |.| ||.|||| &5' --------GCTTGTCCTGGATACAA- 3' Ufd1l mmu-miR-654-3p beg:456 end:476 pic:3' TTCCACTACCAGTC-GTCTGTAT 5'& ||||| || ||||.||. &5' ----TGATGA--AGCCAGATATG 3' Ufd1l mmu-miR-654-5p beg:486 end:511 pic:3' TGTGTACAAGA-CGTCGAATGGT 5'& |.||||| |. |.| | |.|| &5' ATACATGCTTGAGTAACGTGCC- 3' Ufd1l mmu-miR-666-5p beg:665 end:685 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& || | ||| ||||||| &5' -GCGC-CACCAC--TGCCCGC- 3' Ufd1l mmu-miR-669e beg:552 end:568 pic:3' TACTTGTACGTGTGTGTTCTGT 5'& || ||||||| &5' --------GCTTTT-CAAGACA 3' Ufd1l mmu-miR-671-5p beg:226 end:247 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& |||||||. .|||||| ||| &5' CTCCAGCT---TCAGGGC--CCT 3' Ufd1l mmu-miR-672 beg:216 end:240 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& ||| | | || |||.|.||| &5' -CACTCCCTA-ACTCCAGCTTCA 3' Ufd1l mmu-miR-672 beg:235 end:257 pic:3' AGTGTGTGTCATGTG-GTTGGAGT 5'& || .| | | ||.||||| &5' -----CAGGGCCCTCACAGCCTCA 3' Ufd1l mmu-miR-673-3p beg:562 end:589 pic:3' CCACGTGTCTTGAGT------CGGGGCCT 5'& ||||| || |.||.||| &5' -----ACAGAGTTCCCTGGCTGTCCTGGA 3' Ufd1l mmu-miR-681 beg:780 end:798 pic:3' TCGACGGACGGTCGCTCCGAC 5'& .|||||| .|||||| &5' -----TCTGCCACTGAGGCT- 3' Ufd1l mmu-miR-683 beg:134 end:153 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& |||.||| .|||||| &5' --GGATACAAA--GCAGCAG- 3' Ufd1l mmu-miR-684 beg:9 end:29 pic:3' AACTGAACTTCCCTTTTGA 5'& |||.| ||| ||||||. &5' TTGGC-TGACTGGAAAAT- 3' Ufd1l mmu-miR-696 beg:242 end:264 pic:3' GGGTGTCGT--TCGTGTGCG 5'& |.|||||| |||| | || &5' CTCACAGCCTCAGCAGA-GC 3' Ufd1l mmu-miR-705 beg:792 end:813 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||.| |||||. ||||.. &5' -GCTC-CCCCATACCCCATT 3' Ufd1l mmu-miR-742 beg:537 end:561 pic:3' AAATGGGTCGTACCACCGAAAG 5'& ||||...| ||||||||. &5' TTTATTTATTTTTGTGGCTTTT 3' Ufd1l mmu-miR-743a beg:305 end:322 pic:3' AGATGAGTCGAACCACAGAAAG 5'& .|. |||||||| &5' -------GGTGCAGTGTCTTT- 3' Ufd1l mmu-miR-743a beg:708 end:733 pic:3' AGATGAGTCGAACC-ACAGAAAG 5'& |||. .|.||| |||.|||| &5' TCTGAT-GGTTTGTCTGTTTTTC 3' Ufd1l mmu-miR-743b-3p beg:308 end:322 pic:3' AGATAAGTCGTACTACAGAAAG 5'& ||| .||||||| &5' --------GCA--GTGTCTTT- 3' Ufd1l mmu-miR-743b-3p beg:714 end:733 pic:3' AGATAAGTCGTACT-ACAGAAAG 5'& .|. || |||.|||| &5' -------GGTTTGTCTGTTTTTC 3' Ufd1l mmu-miR-759 beg:77 end:90 pic:3' CAGTTTTAACAAAC-GTGAGACG 5'& | .||||||. &5' -------------GATACTCTGT 3' Ufd1l mmu-miR-764-3p beg:355 end:376 pic:3' TGTCAACGGTGA-TACCGGAGGA 5'& ||| || ||||||||. &5' -CAGA---CAAAGATGGCCTCT- 3' Ufd1l mmu-miR-767 beg:292 end:314 pic:3' ACGAGT-CTGTT-GGTACCACGT 5'& || | | .||||||||| &5' ----CATGTCTGTTCATGGTGCA 3' Ufd1l mmu-miR-883a-5p beg:239 end:260 pic:3' CATTGACGA---TGAAGAGAGTCGT 5'& || || | ||||||| &5' ------GCCCTCACAGC-CTCAGCA 3' Ufd1l mmu-miR-883a-5p beg:429 end:451 pic:3' CATT-GACGATGAAGAGAGTCGT 5'& ||| ||||| |||||||. &5' -TAATCTGCTCG--CTCTCAGT- 3' Ufd1l mmu-miR-93 beg:825 end:849 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& | || || || |||||||| &5' -TGTCTTCA-GATCTGCACTTTG 3' Ufd1l mmu-miR-93star beg:237 end:261 pic:3' GCCCTTCACGATC-GAGTCGTCA 5'& ||| || |||||||| &5' -GGGCCCTCACAGCCTCAGCAG- 3' Ufd1l mmu-miR-98 beg:629 end:639 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||.|||| &5' --------------CTGCCTC- 3' Ufd1l mmu-miR-877 beg:185 end:204 pic:3' GGGACGCGGTAG-AGGAGATG 5'& ||||.. ||||||| &5' ----GCGCTGGGGTCCTCTA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ufd1l RAID00089920 mmu-miR-3110-5p miRNA MIMAT0014951 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00183467 mmu-miR-1199-5p miRNA MIMAT0005860 Ufd1l mRNA 22230 CLIP-seq//Prediction 0.6308 Ufd1l RAID00216881 mmu-miR-93-5p miRNA MIMAT0000540 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00330964 mmu-miR-1195 miRNA MIMAT0005856 Ufd1l mRNA 22230 CLIP-seq 0.5483 Ufd1l RAID00430214 mmu-miR-106b-5p miRNA MIMAT0000386 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00524951 mmu-miR-466l-3p miRNA MIMAT0005830 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00557584 mmu-miR-20b-5p miRNA MIMAT0003187 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00750605 mmu-miR-7074-5p miRNA MIMAT0028054 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00755119 mmu-miR-16-5p miRNA MIMAT0000527 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00762206 mmu-miR-20a-5p miRNA MIMAT0000529 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID00836009 mmu-miR-709 miRNA MIMAT0003499 Ufd1l mRNA 22230 CLIP-seq 0.5483 Ufd1l RAID00847570 mmu-miR-17-5p miRNA MIMAT0000649 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01025431 mmu-miR-6979-5p miRNA MIMAT0027860 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01236893 mmu-miR-449a-5p miRNA MIMAT0001542 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01309813 mmu-miR-7118-5p miRNA MIMAT0028133 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01400026 mmu-miR-328-5p miRNA MIMAT0017030 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01485977 mmu-miR-7222-3p miRNA MIMAT0028413 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01657310 mmu-miR-693-5p miRNA MIMAT0003472 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01658038 mmu-miR-330-5p miRNA MIMAT0004642 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01777281 mmu-miR-6897-5p miRNA MIMAT0027694 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID01801083 mmu-miR-298-5p miRNA MIMAT0000376 Ufd1l mRNA 22230 CLIP-seq 0.5483 Ufd1l RAID01854408 mmu-miR-1192 miRNA MIMAT0005850 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02089050 mmu-miR-485-5p miRNA MIMAT0003128 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02366798 mmu-miR-148a-3p miRNA MIMAT0000516 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02491563 mmu-miR-3471 miRNA MIMAT0015642 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02521356 mmu-miR-1896 miRNA MIMAT0007873 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02533483 mmu-miR-3089-5p miRNA MIMAT0014899 Ufd1l mRNA 22230 CLIP-seq 0.5483 Ufd1l RAID02568654 mmu-miR-145a-5p miRNA MIMAT0000157 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02665482 mmu-miR-495-3p miRNA MIMAT0003456 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02700721 mmu-miR-106a-5p miRNA MIMAT0000385 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID02803406 mmu-miR-7116-5p miRNA MIMAT0028129 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03010585 mmu-miR-3098-3p miRNA MIMAT0014918 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03042237 mmu-miR-363-5p miRNA MIMAT0017076 Ufd1l mRNA 22230 CLIP-seq 0.5483 Ufd1l RAID03084766 mmu-miR-223-3p miRNA MIMAT0000665 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03271380 mmu-miR-1982-5p miRNA MIMAT0009459 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03341691 mmu-miR-374b-5p miRNA MIMAT0003727 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03452918 mmu-miR-188-5p miRNA MIMAT0000217 Ufd1l mRNA 22230 CLIP-seq 0.5483 Ufd1l RAID03545936 mmu-miR-127-3p miRNA MIMAT0000139 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03627907 mmu-miR-802-5p miRNA MIMAT0004188 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03876718 mmu-miR-590-3p miRNA MIMAT0004896 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03878950 mmu-miR-7094-1-5p miRNA MIMAT0028094 Ufd1l mRNA 22230 Prediction 0.1828 Ufd1l RAID03950877 mmu-miR-876-5p miRNA MIMAT0004854 Ufd1l mRNA 22230 CLIP-seq 0.5483