DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000605 mmu-miR-350 66411 Tbcb cuuucacAUACCCGAAACACuu | || | |||||| cuuuuccUCUGAGAUUUGUGca 3 16 56 77 [mm9:7:31009175-31009196:-] 0.5212 131 0 -5.10 -0.1284 MIMAT0004187 mmu-miR-744 66411 Tbcb acgacaaucgggaUCGGGGCGu :||||||| guaccuggaaggaGGCCCCGCc 2 10 3 24 [mm9:7:31009228-31009249:-] 0.4653 141 7 -20.72 -0.2716 MIMAT0004825 mmu-miR-423-5p 66411 Tbcb uuucagagcgaGAGACGGGGAGu | | ||||||| cccgccccugaCACAGCCCCUCu 2 13 19 41 [mm9:7:31009211-31009233:-] 0.5357 144 7 -18.37 -0.2657 MIMAT0003507 mmu-miR-500 66411 Tbcb acuugggaacgggucCACGUAa |||||| uuuccucugagauuuGUGCAUu 2 8 58 79 [mm9:7:31009173-31009194:-] 0.5212 120 6 -15.34 -0.2051 MIMAT0003509 mmu-miR-501-3p 66411 Tbcb guuuaggaacgggccCACGUAa |||||| uuuccucugagauuuGUGCAUu 2 8 58 79 [mm9:7:31009173-31009194:-] 0.5212 120 6 -13.86 -0.2051 MIMAT0012772 mmu-miR-599 66411 Tbcb caaacuauuuGACUGUGUu |||||||| ggccccgcccCUGACACAg 2 10 16 34 [mm9:7:31009218-31009236:-] 0.4653 145 7 -14.35 -0.2468 MIMAT0000662 mmu-miR-216a 66411 Tbcb agugucAACGGUCGACUCUAAu || :| |||||||| uggcccUUUUCCUCUGAGAUUu 2 17 51 72 [mm9:7:31009180-31009201:-] 0.5212 152 7 -13.33 -0.4249

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043742 Tbcb Mus musculus 66411 19536157 0 0 R53419; MOUSE$TBCB_01; Binding factors: mmu-miR-1897-5p , mmu-miR-9-5p // 0 0 R53420; MOUSE$TBCB_02; Binding factors: mmu-miR-138-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Tbcb mcmv-miR-m01-1 beg:44 end:66 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& || .|.| ||.|||||| &5' CCTG-TGGCCC--TTTTCCTCT 3' Tbcb mmu-miR-155 beg:58 end:82 pic:3' TGGGGATAGTGTTAAT--CGTAATT 5'& ||.||. .||| ||||||| &5' -CCTCTGA---GATTTGTGCATTAA 3' Tbcb mmu-miR-1953 beg:39 end:63 pic:3' GTCTT-CGGAC-TCTTGAAAGGGT 5'& ||| ||||| .| ||||.|| &5' --GAATGCCTGTGGCCCTTTTCC- 3' Tbcb mmu-miR-1970 beg:17 end:34 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& || |||| ||||||| &5' -----CCG--CCCC--TGACACA 3' Tbcb mmu-miR-216a beg:50 end:72 pic:3' AGTGTCAACGGTC------GACTCTAAT 5'& ||| |||||||| &5' --------GCCCTTTTCCTCTGAGATT- 3' Tbcb mmu-miR-3099star beg:4 end:19 pic:3' GTTCCCGACCTTCCTTCGACC 5'& |||||||||.|| &5' ------CTGGAAGGAGGC--- 3' Tbcb mmu-miR-423-5p beg:18 end:41 pic:3' TTTCAGAGCGAGAGA------CGGGGAGT 5'& ||| | || ||||||| &5' -------CGCCC-CTGACACAGCCCCTC- 3' Tbcb mmu-miR-469 beg:1 end:19 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& .||| |||.||||| &5' ---TACCTG-------GAAGGAGGC- 3' Tbcb mmu-miR-592 beg:18 end:34 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& ||| |||||||. &5' -------CGCCCC-TGACACAG- 3' Tbcb mmu-miR-599 beg:23 end:34 pic:3' CAAACTATTTGACTGTGTT 5'& ||||||||. &5' ----------CTGACACAG 3' Tbcb mmu-miR-675-5p beg:45 end:66 pic:3' TGACACCCGGGAAAGGCGTGGT 5'& |||| ||||||||.| | |. &5' -CTGT-GGCCCTTTTC-CTCT- 3' Tbcb mmu-miR-877 beg:44 end:67 pic:3' GGGACG-CGGT-AGAGGAGATG 5'& ||||. ||| |.||||||. &5' -CCTGTGGCCCTTTTCCTCTG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Tbcb; Ckap1 mmu-miR-140* 47 68 AGGCACC---AAGAUGGGACACCAU |:|||| ||:| |:||| CCUGUGGCCCUUUUCCUCUGA---- Tbcb; Ckap1 mmu-miR-17-5p 39 61 UGAUGGACGUGACAUUCGUGAAAC ||: ||| |||| :|| |||| UCUGAAUGC-CUGU-GGCCCUUUU Tbcb; Ckap1 mmu-miR-181b 18 48 -GGGUGGC-----UGUCGUU---ACUUACAA |||:|| ||||| |||||| CCCCGCCCCUGACACAGCCCCUCUGAAUGC- Tbcb; Ckap1 mmu-miR-181d 21 48 UUGGGUGGCUGUUGUU------ACUUACAA :||| |:||| |||: |||||| CGCCC-CUGAC-ACAGCCCCUCUGAAUGC- Tbcb; Ckap1 mmu-miR-214 33 53 GACGGACAGAC--ACGGACGACA ||| |||| ||||||: -AGCCCCUCUGAAUGCCUGUG-- Tbcb; Ckap1 mmu-miR-216a 29 73 -GUGUCA---------ACGGUCG-------------ACUCUAAU ||||| |||| |: ||||||| ACACAGCCCCUCUGAAUGCCUGUGGCCCUUUUCCUCUGAGAUUU Tbcb; Ckap1 mmu-miR-24 47 78 -GACA--------AGGACGACUU--GACUCGGU |||| |||| ||||: :|| || CCUGUGGCCCUUUUCCU-CUGAGAUUUGUGCA- Tbcb; Ckap1 mmu-miR-25 48 79 -AGUCUGG----------CUCUGUUCACGUUAC | |:|| ||||: ||||| CUGUGGCCCUUUUCCUCUGAGAUUUGUGCAU-- Tbcb; Ckap1 mmu-miR-292-3p 30 60 -UGU----GAGUUU--UGGACCGCCGUGAA- ||| ||| :|||| :||| ||| CACAGCCCCUCUGAAUGCCUG-UGGCCCUUU Tbcb; Ckap1 mmu-miR-293 28 59 -UGUGAUGUU--------UGAGACGCCGUGA- |||| :| :| |||:||| || GACACAGCCCCUCUGAAUGC-CUGUGGCCCUU Tbcb; Ckap1 mmu-miR-296 6 27 UGUCCUAACUCCCCCCCGGGA | ||| |||| |||| CCUGGAAGGAGGCCCCGCCCC Tbcb; Ckap1 mmu-miR-298 12 50 CCUUCU-------------UGUCGGG-AGGAG-ACGG- |:||: ||||||| ||: |||| AGGAGGCCCCGCCCCUGACACAGCCCCUCUGAAUGCCU Tbcb; Ckap1 mmu-miR-34a 15 38 UUGUUGGU-CGAUU-CUGUGACGGU ::|| || ||||| ||| --AGGCCCCGCCCCUGACACAGCCC Tbcb; Ckap1 mmu-miR-376a 48 72 UGCACCU--AAAAGGAGAUGCUA- :|||| |||||||||: ||| CUGUGGCCCUUUUCCUCUGAGAUU Tbcb; Ckap1 mmu-miR-383 15 45 -UCGG-----------UGUCAGUGGAAGACUAGA :||| |||| | ||| |||| AGGCCCCGCCCCUGACACAGCC-CCU-CUGAA-- Tbcb; Ckap1 mmu-miR-465-3p 3 22 AGAUGAAUCU--UUCCGGGACUAG ||| |:|| :|||||| -GUACCUGGAAGGAGGCCCC---- Tbcb; Ckap1 mmu-miR-465-5p 29 48 AGUGUAGUCACGGUAAGAUUUAU- |||| ||| |||:|||: ACACA-----GCCCCUCUGAAUGC Tbcb; Ckap1 mmu-miR-469 3 20 CCUGUGGUUCUAGUUACUUUCUCCGU :||| |||:||||| --GUACCUG-------GAAGGAGGCC Tbcb; Ckap1 mmu-miR-491 7 25 GGAGUACCUUCCCAAGGGGUGA ||||||| ||||:| ----CUGGAAGGAGGCCCCGCC Tbcb; Ckap1 mmu-miR-500 39 80 -GACUUG-GGAA--CGGG----------UC----CACGUA |||||: ||| |||| || |||||| UCUGAAUGCCUGUGGCCCUUUUCCUCUGAGAUUUGUGCAUU Tbcb; Ckap1 mmu-miR-541 26 51 ACACUG-GUUGU--AGUCUUAGGGAA |||| ||:| || |||| ||| -CUGACACAGCCCCUCUGAAUGCCUG Tbcb; Ckap1 mmu-miR-592 20 36 UGUAGUAGCGUAUAACUGUGUUA ||| |||||||: ------CCGCCCC-UGACACAGC Tbcb; Ckap1 mmu-miR-665 10 30 AUUCC-CUGGAGUCGGAGGACCA |||| |:|| | ||| |||| GAAGGAGGCC-CCGCC-CCUGA- Tbcb; Ckap1 mmu-miR-666 25 53 CCGAGAGUGUCG-----AC--ACGGGCGA || |||||| || ||||:|: -CCUGACACAGCCCCUCUGAAUGCCUGUG Tbcb; Ckap1 mmu-miR-669a 21 37 UGUACUUGUACGUGUGUGUUGA :| | |||||:| -----CGCCC-CUGACACAGCC Tbcb; Ckap1 mmu-miR-671 24 65 -GGAG---GUCGGGGAGGU-------C-CCG----AAGGA ||| |||||||||: | ||| ||||| CCCUGACACAGCCCCUCUGAAUGCCUGUGGCCCUUUUCCUC Tbcb; Ckap1 mmu-miR-678 46 72 -GGAGGUCAGGAACGU--GGCUCUG- ||| ::| |||| |:||||: GCCUGUGGCCCUUUUCCUCUGAGAUU Tbcb; Ckap1 mmu-miR-679 4 39 -UGG----UUCUCA---GUGGA----GUGUCAGG- ||| |:||| |:|| ||||| || UACCUGGAAGGAGGCCCCGCCCCUGACACAGCCCC Tbcb; Ckap1 mmu-miR-688 44 55 CUUAUUCAUCAGCGGACGCU- :|||||:|: ----------AUGCCUGUGGC Tbcb; Ckap1 mmu-miR-693-3p 30 53 AAUGUCGGUGUAGACUUUC-GACG- |||||| | |||||| | |||: -CACAGCC-CCUCUGAAUGCCUGUG Tbcb; Ckap1 mmu-miR-700 7 25 CCACCUGAG-CCAAGGGCGCAC |||| || ||||| -CUGGAAGGAGGC-CCCGCC-- Tbcb; Ckap1 mmu-miR-709 36 64 AGGAGG---ACGGAGA-CGG----AGG- ||||: ||||| | ||| ||| CCCUCUGAAUGCCUGUGGCCCUUUUCCU Tbcb; Ckap1 mmu-miR-710 55 75 GAGUUGAGAGGGG--UUCUGAACC ||:|:||: :|||:||| ----CCUUUUCCUCUGAGAUUUGU Tbcb; Ckap1 mmu-miR-712 2 18 CCAUGGCGGGCCCACUUCCUC- ||||| ||||||| UGUACCUG------GAAGGAGG Tbcb; Ckap1 mmu-miR-712* 3 25 GUUGUGGGCCC-CCACUGA-GCGU :|||:|| || |:| ||| --GUACCUGGAAGGAGGCCCCGCC Tbcb; Ckap1 mmu-miR-744 1 25 CGACAAUCGGGA-------UCGGGGCGU |||| ||| :||||||| -CUGUA---CCUGGAAGGAGGCCCCGCC Tbcb; Ckap1 mmu-miR-762 1 28 CGAGACA-GGG-------CCGGGGUCGGGG- |||| ||: |||||| ||||| ---CUGUACCUGGAAGGAGGCCCC-GCCCCU Tbcb; Ckap1 mmu-miR-764-3p 44 65 UGUCAACGGUGAUACCGG----AGGA- |||| |:||||| |||| ----AUGCC--UGUGGCCCUUUUCCUC Tbcb; Ckap1 mmu-miR-216a 65 72 GUGUCA---------ACGGUC-------------GACUCUAAU ||||| |||| |||||||| CACAGCCCCUCUGAAUGCCUGUGGCCCUUUUCCUCUGAGAUUU Tbcb; Ckap1 mmu-miR-140* 34 55 aggcaccaagaugGGACACCau ||||||| gcccctctgaatgCCTGTGGcc Tbcb; Ckap1 mmu-miR-181b 19 48 GGGUGG---C--UGUC---GUUACUUACaa |||:|| | |||| | |||||| CCCGCCCCTGACACAGCCCCTCTGAATGcc Tbcb; Ckap1 mmu-miR-181d 17 48 uuGGGUGG---CUGUUGUU------ACUUACaa |||:|| ||| |||: |||||| gcCCCGCCCCTGAC-ACAGCCCCTCTGAATGcc Tbcb; Ckap1 mmu-miR-214 32 54 GACGGACAGAC--ACGGACGACa | ||| |||| ||||||: | CAGCCCCTCTGAATGCCTGTGGc Tbcb; Ckap1 mmu-miR-24 32 56 GACAAGGACGACUU---GAC-UCGGu | | ||| ||||| ||| :||| CAGCCCCT-CTGAATGCCTGTGGCCc Tbcb; Ckap1 mmu-miR-25 59 80 agucuGGCUCUGUUCACGUUAc |:||||: ||||| | ttcctCTGAGATTTGTGCATTa Tbcb; Ckap1 mmu-miR-292-3p 37 58 uGUGAGUUUUGGACCGCCGUGAA | || || :||| |:||| ||| cCTCTGAATGCCT-GTGGCCCTT Tbcb; Ckap1 mmu-miR-293 37 57 uGUGAUGUUUGAGACGCCGUGA | ||: | :| |||:||| || cCTCTGAATGC-CTGTGGCCCT Tbcb; Ckap1 mmu-miR-296 1 21 uguccuaACUCCCCCCCGGGa ||: || ||||| ctgtaccTGGAAGGAGGCCCc Tbcb; Ckap1 mmu-miR-298 24 44 ccuuCU-UGUCGGGAGGAGACgg || |||||| |||||| ccctGACACAGCC--CCTCTGaa Tbcb; Ckap1 mmu-miR-298 41 68 cCUUCUUG---UCGGG---AGGAGACgg ||| : | :|||| ||||||| tGAATGCCTGTGGCCCTTTTCCTCTGag Tbcb; Ckap1 mmu-miR-326 6 31 uGACC-UCCUUC----CCGGGUCUcc |||| ||||:| | ||| || cCTGGAAGGAGGCCCCGCCCCTGAca Tbcb; Ckap1 mmu-miR-383 27 46 uCGGUGUCAGUGGAAGACUaga | ||||| | || ||||| tGACACAG-C-CCCTCTGAatg Tbcb; Ckap1 mmu-miR-465-3p 2 31 AGAUGAAUCUU--UCC------GGGACUag | ||| |:||| ||| |||||| TGTACCTGGAAGGAGGCCCCGCCCCTGAca Tbcb; Ckap1 mmu-miR-465-5p 27 46 AGUGUAGUCACGGUAAGAUUUAu | ||| || ||| |||:||| TGACA-CA--GCCCCTCTGAATg Tbcb; Ckap1 mmu-miR-469 1 19 ccugugguucuaguuaCUUUCUCCGu |||:||||| -------ctgtacctgGAAGGAGGCc Tbcb; Ckap1 mmu-miR-491 3 24 ggaGUACCUUCCCAAGGGGUGa | ||||||| ||||:| gtaCCTGGAAGGAGGCCCCGCc Tbcb; Ckap1 mmu-miR-500 48 78 GAC-UUGGGAACGGG----UC----CACGUA ||| ::||||| :|| || |||||| CTGTGGCCCTTTTCCTCTGAGATTTGTGCAT Tbcb; Ckap1 mmu-miR-541 25 50 acACUG-GUU--GUAGUCUUAGGGAa |||| ||: | || |||| ||| ccTGACACAGCCCCTCTGAATGCCTg Tbcb; Ckap1 mmu-miR-592 14 35 uguaguaGCGUAUAACUGUGUua ||| ||||||| gaggcccCGC-CCCTGACACAgc Tbcb; Ckap1 mmu-miR-665 10 30 aUUCC-CUGGAGUCGGAGGACca |||| |:|| | | | |||| gAAGGAGGCC-CCG-CCCCTGac Tbcb; Ckap1 mmu-miR-666 22 52 CCGAGA--GUGUC-----GAC--ACGGGCga | | || ||||| ||| ||||:| GCCCCTGACACAGCCCCTCTGAATGCCTGtg Tbcb; Ckap1 mmu-miR-669a 12 36 uguaCUUGUACGUG---UGUGUUGa |: | || | |||||:| aggaGGCCCCGCCCCTGACACAGCc Tbcb; Ckap1 mmu-miR-671 25 63 GGA--G-GUCGGGGA-------GGUC-CCG----AAGGA ||| | |||||||| || | ||| ||||| CCTGACACAGCCCCTCTGAATGCCTGTGGCCCTTTTCCT Tbcb; Ckap1 mmu-miR-678 47 70 GGAGGUCAGG--AACGUGGCUCUg ||| ::| || || | |:|||| CCTGTGGCCCTTTTCCTCTGAGAt Tbcb; Ckap1 mmu-miR-679 5 37 UGG----UUCUC-----AGUGGA--GUGUCAGG ||| |:||| | ||| ||||| || ACCTGGAAGGAGGCCCCGCCCCTGACACAGCCC Tbcb; Ckap1 mmu-miR-688 34 53 cuuauucaucagCGGACGCu |||||:| gcccctctgaatGCCTGTGg Tbcb; Ckap1 mmu-miR-693-3p 29 51 aaUGUCGGUGUAGACUUUC-GACg |||||| | |||||| | ||| acACAGCC-CCTCTGAATGCCTGt Tbcb; Ckap1 mmu-miR-700 6 26 ccACCUGAGCCAAGGGCGcac |||| | ||||| ccTGGAAGGAGGCCCCGCccc Tbcb; Ckap1 mmu-miR-709 22 39 aGGAGGACGGAGACGGAGg || |||| | | ||| | gCC-CCTGACACAGCCCCt Tbcb; Ckap1 mmu-miR-710 52 74 gaguugAGAGG-GGUUCUGAACc |:||| |::|||:||| ggccctTTTCCTCTGAGATTTGt Tbcb; Ckap1 mmu-miR-712 1 16 ccauGGCG-GGCCCACUUCCUC |:|: || | ||||||| ----CTGTACCTG--GAAGGAG Tbcb; Ckap1 mmu-miR-712* 1 24 GUUGUGGGCC--CCCACUGAGCGu | ::|||:|| || | | ||| CTGTACCTGGAAGGAGGCCCCGCc Tbcb; Ckap1 mmu-miR-744 6 24 cGACAAUCGGGAUCGGGGCGu ||| || :||||||| cCTGGAAG--GAGGCCCCGCc Tbcb; Ckap1 mmu-miR-744 16 45 cgacaaucGGGA-----UCGGGGCGU---- |||| |||||| | ggccccgcCCCTGACACAGCCCCTCTGAAT Tbcb; Ckap1 mmu-miR-762 17 38 CGAGACAGGGCCGGGGUCGGGG || | | ||| | | ||||||| GCCCCGCCCCTGACACAGCCCC Tbcb; Ckap1 mmu-miR-764-3p 40 63 ugucaACGGUGAUACCGG----AGGA ||| ||:||||| |||| ctgaaTGC--CTGTGGCCCTTTTCCT Tbcb; Ckap1 mmu-miR-770-3p 31 59 gGUCGAGG-----UGCAG--UCCGGGugc |||| || |:| | ||||| aCAGCCCCTCTGAATGCCTGTGGCCCttt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tbcb RAID00135611 mmu-miR-5113 miRNA MIMAT0020621 Tbcb mRNA 66411 Prediction 0.1828 Tbcb RAID02155845 mmu-miR-423-5p miRNA MIMAT0004825 Tbcb mRNA 66411 Prediction 0.1828 Tbcb RAID02603279 mmu-miR-6921-5p miRNA MIMAT0027742 Tbcb mRNA 66411 Prediction 0.1828 Tbcb RAID03413698 mmu-miR-216a-5p miRNA MIMAT0000662 Tbcb mRNA 66411 Prediction 0.1828