DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 21745 Tep1 aucucGUCGU-UUAUUACUA-AGc ||| | || :||||| || guacuCAGGACAAAGAUGAUGUCa 2 18 8 31 [mm9:14:51443812-51443835:-] 0.5657 120 0 -9.05 -0.8628 MIMAT0004545 mmu-miR-200b* 21745 Tep1 agGUUACGACGGGUCAUUCUAc | || :| |::|||||||| guCUAUAUU-CUUAGUAAGAUu 2 21 61 81 [mm9:14:51443762-51443782:-] 0.5657 158 7 -14.76 -1.2445 MIMAT0000376 mmu-miR-298 21745 Tep1 ccCUUCUUGUCGGGAGGAGACGg |:||| ||| ||||||| aaGGAGACCAGGAAGCCUCUGCc 2 22 47 69 [mm9:14:51450852-51450874:-] 0.5009 161 7 -27.80 -0.1339 MIMAT0004619 mmu-miR-200a* 21745 Tep1 aggucGUGACAGGCCAUUCUAc :|:| | : ||||||| gucuaUAUUCU-UAGUAAGAUu 2 18 61 81 [mm9:14:51443762-51443782:-] 0.5657 143 7 -10.28 -1.2445 MIMAT0004629 mmu-miR-22* 21745 Tep1 auUUCGAACGGU--GACUUCU-UGa | || |||:| ||||||| || agAUGC-UGCUAGCCUGAAGACACc 2 21 34 57 [mm9:14:51443786-51443809:-] 0.5657 125 0 -15.60 -0.5138 MIMAT0004660 mmu-miR-19a* 21745 Tep1 caUCACGUUGAUACGUUUUGAu ||| :|:|| :|||||| uuAGUAAGAUUA--UAAAACUa 2 21 71 90 [mm9:14:51443753-51443772:-] 0.5657 137 6 -11.82 -0.3630 MIMAT0004663 mmu-miR-200c* 21745 Tep1 gguuUGUGACGACCCAUUCUGc |:|:| || ||||||: gucuAUAUU-CUUAGUAAGAUu 2 19 61 81 [mm9:14:51443762-51443782:-] 0.5657 136 0 -10.87 -0.1941 MIMAT0004759 mmu-miR-466a-5p 21745 Tep1 auacauguacaUGUGUGUGUau :|||||||| aauauuaaaaaGCACACACAga 3 12 117 138 [mm9:14:51450783-51450804:-] 0.5009 131 0 -12.97 -0.1283 MIMAT0004789 mmu-miR-450a-3p 21745 Tep1 uacuuacguuucguaGGGGUUa |||||| ugugcacauucccucCCCCAAc 2 8 91 112 [mm9:14:51450809-51450830:-] 0.5009 120 6 -13.61 -0.1677 MIMAT0014816 mmu-miR-3099 21745 Tep1 aggGGUUGGAGA-GA-GAUCGGAu :|||| | || ||||||| augUCAACAGAUGCUGCUAGCCUg 2 20 26 49 [mm9:14:51443794-51443817:-] 0.5657 149 7 -21.44 -0.3774 MIMAT0003452 mmu-miR-678 21745 Tep1 ggaggUCAGGAAC--GUGG-CUCUg || ||||| ||| |||| ---ggAGACCUUGAAGACCUGAGAu 2 18 1 22 [mm9:14:51450899-51450920:-] 0.5009 120 0 -18.59 -0.7156 MIMAT0003499 mmu-miR-709 21745 Tep1 aggaggaCGGAGAC-GGAGg ||||||| |||| ccaggaaGCCUCUGCCCUCc 2 13 54 73 [mm9:14:51450848-51450867:-] 0.5009 124 0 -24.35 -0.1031 MIMAT0003508 mmu-miR-501-5p 21745 Tep1 aaaGUGGGUCCCUGUUUC--CUAa :||:|| |||||||| ||| cagUACUCA-GGACAAAGAUGAUg 2 20 6 28 [mm9:14:51443815-51443837:-] 0.5657 121 0 -20.03 -0.5599 MIMAT0004875 mmu-miR-466b-5p 21745 Tep1 guacauguacaUGUGUGUGUag :|||||||| aauauuaaaaaGCACACACAga 3 12 117 138 [mm9:14:51450783-51450804:-] 0.5009 131 0 -14.40 -0.1283 MIMAT0004879 mmu-miR-466e-5p 21745 Tep1 auacauguacaUGUGUGUGUag :|||||||| aauauuaaaaaGCACACACAga 3 12 117 138 [mm9:14:51450783-51450804:-] 0.5009 131 0 -12.97 -0.1283 MIMAT0004884 mmu-miR-466h 21745 Tep1 auguguguucguguaCGUGUGu |||||| uaaaaauauuaaaaaGCACACa 2 8 113 134 [mm9:14:51450787-51450808:-] 0.5009 120 6 -11.24 -0.1560 MIMAT0004888 mmu-miR-493 21745 Tep1 ggacCGUGUGUCAUCC-UGGAAGu || | | |:|| |||||| cucuGCCCUCCUUGGGCACCUUCa 2 20 63 86 [mm9:14:51450835-51450858:-] 0.5009 123 6 -20.52 -0.2677 MIMAT0004930 mmu-miR-466d-5p 21745 Tep1 guacauguacaUGCGUGUGUGu | |||||||| aaaauauuaaaAAGCACACACa 2 12 115 136 [mm9:14:51450785-51450806:-] 0.5009 147 7 -17.30 -1.0506 MIMAT0005292 mmu-miR-582-3p 21745 Tep1 aacccaagUCAAC-A-AGUUGUCc || || | ||||||| caggacaaAGAUGAUGUCAACAGa 2 15 13 36 [mm9:14:51443807-51443830:-] 0.5657 144 7 -13.57 -1.2253 MIMAT0005837 mmu-miR-1187 21745 Tep1 aaUGUGUGUAUGUGUGUGUGUau |:|: | | :|||||||| aaAUAUUAAAAAGCACACACAga 3 22 116 138 [mm9:14:51450783-51450805:-] 0.5009 141 0 -14.73 -0.1283 MIMAT0005845 mmu-miR-466k 21745 Tep1 agUGUACAUGUACAUGUGUGUGu |:|| | | | ||||||| aaAUAUUAAAAAG--CACACACa 2 22 116 136 [mm9:14:51450785-51450805:-] 0.5009 146 7 -16.89 -1.0268 MIMAT0005848 mmu-miR-466j 21745 Tep1 aaUGUGUGUACGUGUACGUGUGu | | |:|| | | |||||| cuAAAAAUAUUAAAAAGCACACa 2 22 112 134 [mm9:14:51450787-51450809:-] 0.5009 129 6 -12.12 -0.1530 MIMAT0007876 mmu-miR-1907 21745 Tep1 uggaggucuaggagACGACGAg ||||||| augaugucaacagaUGCUGCUa 2 9 23 44 [mm9:14:51443799-51443820:-] 0.5657 140 7 -15.62 -0.8254 MIMAT0009390 mmu-miR-1927 21745 Tep1 agUCAGGGAUUGUAG-GUCUCCAg || :: |:| | | :|||||| acAGAUUGUGAAAGCAUAGAGGUa 2 22 134 157 [mm9:14:51450764-51450787:-] 0.5009 136 6 -17.90 -0.1189 MIMAT0009399 mmu-miR-1935 21745 Tep1 ucUCUAGGCGGUCGGAGACGGa ||| | | |||||||||| ggAGACCAGGAAGCCUCUGCCc 2 21 49 70 [mm9:14:51450851-51450872:-] 0.5009 168 7 -30.75 -0.1078 MIMAT0009406 mmu-miR-1941-3p 21745 Tep1 uacccucuaugacgAUUCUAc |||||| gucuauauucuuagUAAGAUu 2 8 61 81 [mm9:14:51443762-51443782:-] 0.5657 120 6 -3.57 -0.2292 MIMAT0009417 mmu-miR-1950 21745 Tep1 acugguauaggaaUCUACGUCu |||||||| -------------AGAUGCAGu 2 10 1 9 [mm9:14:51443834-51443842:-] 0.6527 145 7 -12.03 -0.8954 MIMAT0000123 mmu-miR-1 21745 Tep1 uauGUAUGAAGAAAUGUAAGGu ||| | | | ||||||| cuuCAUUCAUGUGCACAUUCCc 2 20 82 103 [mm9:14:51450818-51450839:-] 0.5009 155 7 -10.19 -0.2462 MIMAT0000124 mmu-miR-15b 21745 Tep1 acaUUUGGUACUACACGACGAu | ::|| | ||||||| augAUGUCAACAGAUGCUGCUa 2 20 23 44 [mm9:14:51443799-51443820:-] 0.5657 147 7 -16.17 -0.8289 MIMAT0000159 mmu-miR-149 21745 Tep1 cccuCACUUCUGUGCCUC-GGUCu ||| : || |||| |||| ccauGUGUGUCCAAGGAGACCAGg 2 20 35 58 [mm9:14:51450863-51450886:-] 0.5009 123 0 -18.46 -0.1103 MIMAT0000225 mmu-miR-195 21745 Tep1 cgGUUAUA-AAGAC-ACGACGAu ::||:| | | ||||||| gaUGAUGUCAACAGAUGCUGCUa 2 20 22 44 [mm9:14:51443799-51443821:-] 0.5657 141 7 -13.87 -0.8254 MIMAT0000239 mmu-miR-206 21745 Tep1 gguGUGUGAAGGAAUGUAAGGu ||: | | : ||||||| cuuCAUUCAUGUGCACAUUCCc 2 20 82 103 [mm9:14:51450818-51450839:-] 0.5009 147 7 -12.30 -0.2462 MIMAT0000526 mmu-miR-15a 21745 Tep1 gugUUUGGUAAUACACGACGAu | ::|| | ||||||| augAUGUCAACAGAUGCUGCUa 2 20 23 44 [mm9:14:51443799-51443820:-] 0.5657 147 7 -13.48 -0.8289 MIMAT0000527 mmu-miR-16 21745 Tep1 gcgGUUAUAAAUG-C-ACGACGAu ::||:| || | ||||||| agaUGAUGUCAACAGAUGCUGCUa 2 20 21 44 [mm9:14:51443799-51443822:-] 0.5657 149 7 -16.40 -0.8254 MIMAT0000528 mmu-miR-18a 21745 Tep1 gauAGACGUGAUCUA--CGUGGAAu ||||| || | ||||||| gccUCUGCCCUCCUUGGGCACCUUc 2 21 61 85 [mm9:14:51450836-51450860:-] 0.5009 155 7 -17.57 -0.1132 MIMAT0000546 mmu-miR-103 21745 Tep1 aguaucgggACA--UGU-UACGACGa ||| ||| ||||||| caaagaugaUGUCAACAGAUGCUGCu 2 15 18 43 [mm9:14:51443800-51443825:-] 0.5657 148 7 -17.22 -0.3212 MIMAT0000548 mmu-miR-322 21745 Tep1 agguuUUGUACUUAACGACGAc |||| || ||||||| augucAACA-GA--UGCUGCUa 2 18 26 44 [mm9:14:51443799-51443817:-] 0.5657 148 7 -12.82 -0.8012 MIMAT0000647 mmu-miR-107 21745 Tep1 acuaucgggACA--UGU-UACGACGa ||| ||| ||||||| caaagaugaUGUCAACAGAUGCUGCu 2 15 18 43 [mm9:14:51443800-51443825:-] 0.5657 148 7 -19.83 -0.3212 MIMAT0000654 mmu-miR-32 21745 Tep1 acGUUGAA-UCAUUACACGU-UAu || ||| | | ||||||| || ggCACCUUCAUUCAUGUGCACAUu 2 21 77 100 [mm9:14:51450821-51450844:-] 0.5009 131 0 -12.61 -0.2862 MIMAT0000663 mmu-miR-218 21745 Tep1 uguaccAAUCUAGUUCGUGUu ||| | ||||||| aaaauaUUAAA--AAGCACAc 2 16 115 133 [mm9:14:51450788-51450806:-] 0.5009 144 7 -7.77 -0.9886 MIMAT0000679 mmu-miR-217 21745 Tep1 aggucagucaaggaCUACGUCAu |||||||| -------------aGAUGCAGUa 2 10 1 10 [mm9:14:51443833-51443842:-] 0.6527 145 7 -14.18 -1.0538 MIMAT0001091 mmu-miR-410 21745 Tep1 ugUCCGGUAGACACA-AUAUAa | | || |||||| ||||| ugAAGACACCUGUGUCUAUAUu 2 20 48 69 [mm9:14:51443774-51443795:-] 0.5657 135 0 -13.69 -0.4732 MIMAT0003181 mmu-miR-367 21745 Tep1 agUGGUAACGAUUUCACGU-UAa ||| | :| | ||||| || gcACCUUCAUUCAUGUGCACAUu 2 21 78 100 [mm9:14:51450821-51450843:-] 0.5009 120 0 -12.89 -0.2837 MIMAT0003727 mmu-miR-374 21745 Tep1 gugaaucguccaacaUAAUAUa |||||| uauauucuuaguaagAUUAUAa 2 8 64 85 [mm9:14:51443758-51443779:-] 0.5657 120 6 -8.45 -0.4501 MIMAT0003729 mmu-miR-216b 21745 Tep1 aguguaaACGGACGUCUCUAaa || :|| |||||| acuaaaaUG-UUG-AGAGAUcu 3 16 87 106 [mm9:14:51443737-51443756:-] 0.5657 123 0 -8.73 -0.1692 MIMAT0003453 mmu-miR-497 21745 Tep1 auguuuGGUGUCACACGACGAc | |||| ||||||| ugauguCAACAG-AUGCUGCUa 2 17 24 44 [mm9:14:51443799-51443819:-] 0.5657 150 7 -15.32 -0.8182 MIMAT0003513 mmu-miR-505 21745 Tep1 ucUUUUGGUCGUUCACAACUgc |||||:| || |||||| auAAAACUA--AAAUGUUGAga 3 21 82 101 [mm9:14:51443742-51443761:-] 0.5657 145 0 -10.87 -0.3283 MIMAT0004858 mmu-miR-18b 21745 Tep1 gauugucguGAUCUACGUGGAAu || |: ||||||| ucugcccucCUUGG-GCACCUUc 2 15 64 85 [mm9:14:51450836-51450857:-] 0.5009 144 7 -14.79 -0.1047 MIMAT0004869 mmu-miR-421 21745 Tep1 cgcggguuaauuacagACAACUa |||||| gauuauaaaacuaaaaUGUUGAg 2 8 78 100 [mm9:14:51443743-51443765:-] 0.5657 120 6 -5.80 -0.2317

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G065777 Tep1 Mus musculus 21745

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Tep1 mmu-miR-217 beg:0 end:11 pic:3' AGGTCAGTCAAGGACTACGTCAT 5'& ||||||||| &5' --------------GATGCAGTA 3' Tep1 mmu-miR-103 beg:25 end:44 pic:3' AGTATCGGGACATGTTACGACGA 5'& |.| .|||||||| &5' -----GTCAACA--GATGCTGCT 3' Tep1 mmu-miR-1950 beg:0 end:9 pic:3' ACTGGTATAGGAATCTACGTCT 5'& |||||||| &5' -------------AGATGCAG- 3' Tep1 mmu-miR-107 beg:21 end:44 pic:3' ACTATCGGGACATGTTACGACGA 5'& |||| |.| .|||||||| &5' TGAT-GTCAACA--GATGCTGCT 3' Tep1 mmu-miR-15b beg:25 end:45 pic:3' ACATTTGGTACTACACGACGAT 5'& ||| ||| || |||||||| &5' TGTCAACA--GA--TGCTGCTA 3' Tep1 mmu-miR-16 beg:25 end:45 pic:3' GCGGTTATAAATGC-ACGACGAT 5'& |.||| | |||||||| &5' -GTCAACA-----GATGCTGCTA 3' Tep1 mmu-miR-1948 beg:32 end:51 pic:3' GACATGCTCACGA-GA-CGGATTT 5'& || |||| || ||||.|| &5' ------GA-TGCTGCTAGCCTGAA 3' Tep1 mmu-miR-19astar beg:69 end:91 pic:3' CATCACGTTGATACGTTTTGAT 5'& |||| .|.||| ||||||| &5' -TAGTAAGATTAT--AAAACTA 3' Tep1 mmu-miR-200bstar beg:60 end:81 pic:3' AGGTTACGACGGGTCATTCTAC 5'& ||.| |..|||||||| &5' TCTATATT--CTTAGTAAGAT- 3' Tep1 mmu-miR-20astar beg:0 end:10 pic:3' GAAATTCACGAGCATTACGTCA 5'& .||||||| &5' --------------GATGCAGT 3' Tep1 mmu-miR-3099 beg:27 end:50 pic:3' AGGGGTTGGAGA-GA-GATCGGAT 5'& .|||| || |||||||. &5' ---TCAACAGATGCTGCTAGCCTG 3' Tep1 mmu-miR-322 beg:28 end:44 pic:3' AGGTTTTGTACTTAACGACGAC 5'& |||| || ||||||| &5' -----AACA-GA--TGCTGCT- 3' Tep1 mmu-miR-484 beg:35 end:51 pic:3' TAGCCCTCCCCTGAC--TCGGACT 5'& .||| ||||||| &5' -----------GCTGCTAGCCTGA 3' Tep1 mmu-miR-496 beg:0 end:15 pic:3' CTCTAACCGGTACATTATGAGT 5'& ||| |.|||||| &5' ----------ATGCAGTACTCA 3' Tep1 mmu-miR-497 beg:29 end:44 pic:3' ATGTTTGGTGTCACACGACGAC 5'& |||| ||||||| &5' --------ACAGA-TGCTGCT- 3' Tep1 mmu-miR-503star beg:0 end:14 pic:3' GGTCCGTCACCTTTGTTATGAG 5'& || .||.||||| &5' ----------GATGCAGTACTC 3' Tep1 mmu-miR-582-3p beg:18 end:36 pic:3' AACCCAAGTCAACA--AGTTGTCC 5'& || || ||||||| &5' --------AGATGATGTCAACAG- 3' Tep1 mmu-miR-669g beg:20 end:43 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& || ||||||||| ||.| ||| &5' ATGATGTCAACAGATGC--TGC- 3' Tep1 mmu-miR-680 beg:21 end:41 pic:3' GGGGGTACAGTCGTCTACGGG 5'& . |||||| |||||||. &5' ---TGATGTCAACAGATGCT- 3' Tep1 mmu-miR-876-5p beg:95 end:106 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& ||||.|||.| &5' ------------GAGAGATCTA 3' Tep1 mmu-miR-883b-5p beg:55 end:77 pic:3' ACTGACGATGG-GTAAGAGTCAT 5'& |||. .|||||.|||| &5' ---CTGTGTCTATATTCTTAGTA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tep1 RAID00358676 mmu-miR-103-3p miRNA MIMAT0000546 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID00463272 mmu-miR-410-3p miRNA MIMAT0001091 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID00709229 mmu-miR-322-5p miRNA MIMAT0000548 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID00816991 mmu-miR-374b-5p miRNA MIMAT0003727 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID00833064 mmu-miR-1a-3p miRNA MIMAT0000123 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID00899975 mmu-miR-15a-5p miRNA MIMAT0000526 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID00963801 mmu-miR-218-5p miRNA MIMAT0000663 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID01271060 mmu-miR-149-5p miRNA MIMAT0000159 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID01330734 mmu-miR-497a-5p miRNA MIMAT0003453 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID01348042 mmu-miR-206-3p miRNA MIMAT0000239 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID01353584 mmu-miR-18b-5p miRNA MIMAT0004858 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID01451937 mmu-miR-107-3p miRNA MIMAT0000647 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID01470990 mmu-miR-6419 miRNA MIMAT0025175 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID01475860 mmu-miR-542-3p miRNA MIMAT0003172 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID02203934 mmu-miR-421-3p miRNA MIMAT0004869 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID02344665 mmu-miR-18a-5p miRNA MIMAT0000528 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID02346916 mmu-miR-367-3p miRNA MIMAT0003181 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID02916167 mmu-miR-216b-5p miRNA MIMAT0003729 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID03134002 mmu-miR-195a-5p miRNA MIMAT0000225 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID03339190 mmu-miR-16-5p miRNA MIMAT0000527 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID03425935 mmu-miR-32-5p miRNA MIMAT0000654 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID03625512 mmu-miR-15b-5p miRNA MIMAT0000124 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID03663611 mmu-miR-505-3p miRNA MIMAT0003513 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID03848412 mmu-miR-6996-3p miRNA MIMAT0027895 Tep1 mRNA 21745 Prediction 0.1828 Tep1 RAID04054124 mmu-miR-217-5p miRNA MIMAT0000679 Tep1 mRNA 21745 CLIP-seq//Prediction 0.6308 Tep1 RAID04380601 G730013B05Rik lncRNA 619312 Tep1 protein 21745 Microarray//RNA-seq 0.6606