DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Stambp; Amsh ATTTA 60-1334 1541-1545;1854-1858;2041-2045 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambp; Amsh WWATTTAWW 60-1334 1539-1547;2039-2047 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambp; Amsh WWWATTTAWWW 60-1334 1538-1548;2038-2048 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambp; Amsh WWWWATTTAWWWW 60-1334 1537-1549 Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT015971 mmu-miR-124-3p Mus musculus Stambp 70527 Mus musculus Microarray Functional MTI (Weak) 18619591 MIRT603277 mmu-miR-132-3p Mus musculus Stambp 70527 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT013674 mmu-miR-190a-5p Mus musculus Stambp 70527 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT013126 mmu-miR-297a-5p Mus musculus Stambp 70527 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT603279 mmu-miR-212-3p Mus musculus Stambp 70527 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603281 mmu-miR-1894-5p Mus musculus Stambp 70527 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT603280 mmu-miR-452-3p Mus musculus Stambp 70527 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000152 mmu-miR-140* 70527 Stambp ggcaccaAGAUGGGACACCAu | |:: ||||||| cuccacaUGUGUGCUGUGGUa 2 15 135 155 [mm9:6:83493819-83493839:-] 0.4978 146 7 -16.19 -0.2657 MIMAT0004575 mmu-miR-295* 70527 Stambp cuuCACACGGGGUGUAAACUca || | :||: |||||| guuGUUUUUCCUUAAUUUGAaa 3 20 375 396 [mm9:6:83493578-83493599:-] 0.5238 135 0 -8.85 -0.1456 MIMAT0004579 mmu-miR-302a* 70527 Stambp cguucauguuggugcAAAUUCa |||||| gaaaucaucuuauuuUUUAAGa 2 8 393 414 [mm9:6:83493560-83493581:-] 0.5134 120 6 -4.63 -0.1309 MIMAT0004616 mmu-miR-30c-1* 70527 Stambp ccucauuuguugggaGAGGGUc |||||| ccucuugaaauuuacCUCCCAa 2 8 511 532 [mm9:6:83493442-83493463:-] 0.6072 120 6 -12.62 -0.1660 MIMAT0005438 mmu-miR-30c-2* 70527 Stambp ucucauuugucggaaGAGGGUc |||||| ccucuugaaauuuacCUCCCAa 2 8 511 532 [mm9:6:83493442-83493463:-] 0.6072 120 6 -9.48 -0.1660 MIMAT0000593 mmu-miR-344 70527 Stambp ugucaguccgaAACCGAUCUAGu || ||||||| agagaaaauacUUCUCUAGAUCc 2 13 470 492 [mm9:6:83493482-83493504:-] 0.5403 144 7 -10.53 -0.5539 MIMAT0000595 mmu-miR-345-5p 70527 Stambp uucgugaccugauccCCAGUCg |||||| guguauuauuuaaaaGGUCAGg 2 8 700 721 [mm9:6:83493253-83493274:-] 0.6115 120 6 -12.57 -0.1593 MIMAT0004660 mmu-miR-19a* 70527 Stambp caUCACGUUGAUACGUUUUGAu :| ||| ||:||||||||| uaGGGGCAUCUGUGCAAAACUg 2 21 560 581 [mm9:6:83493393-83493414:-] 0.6072 176 7 -24.53 -0.3702 MIMAT0004663 mmu-miR-200c* 70527 Stambp gguuugugacgacccAUUCUGc |||||| aaucaucuuauuuuuUAAGACa 2 8 395 416 [mm9:6:83493558-83493579:-] 0.5134 120 6 -7.43 -0.1571 MIMAT0000672 mmu-miR-199b* 70527 Stambp cuuguccAUC-AGAUUUGUGACCc ||| || ||||||||| acuucucUAGAUCCAAACACUGGc 2 17 479 502 [mm9:6:83493472-83493495:-] 0.5737 163 7 -15.82 -0.6924 MIMAT0000742 mmu-miR-378* 70527 Stambp uguguccuggaccUCAGUCCUc :||||||: guauuauuuaaaaGGUCAGGGu 2 10 702 723 [mm9:6:83493251-83493272:-] 0.6115 125 0 -11.63 -0.1054 MIMAT0001094 mmu-miR-412 70527 Stambp gccgAUCACCUGGUC-CACUu | ||| |||| |||| ugugUUGUGCUCCAGAGUGA- 2 17 755 774 [mm9:6:83493200-83493219:-] 0.6083 120 0 -17.22 -0.4825 MIMAT0003120 mmu-miR-483* 70527 Stambp uucUGCCCUCCCCUCCUCACu |:|| | | ||||||| cacAUGGUA--GAAGGAGUGu 2 19 87 105 [mm9:6:83493869-83493887:-] 0.4978 147 7 -17.48 -0.2175 MIMAT0003186 mmu-miR-369-3p 70527 Stambp uuuCUAGUUGGUACAUAAUAa | |:|| :|||||||| cuuGUUUAA-AGUGUAUUAUu 2 19 690 709 [mm9:6:83493265-83493284:-] 0.6147 152 7 -9.27 -1.1215 MIMAT0004822 mmu-miR-770-5p 70527 Stambp gcAC-CGGGUCUGUGCAC-CACGa || |::| ||::||| |||| ugUGUGUUCUCACGUGUGUGUGCa 2 21 156 179 [mm9:6:83493795-83493818:-] 0.4978 123 0 -25.05 -0.5390 MIMAT0003736 mmu-miR-670 70527 Stambp aaGUGGUGUAUGU--GAGUCCCua :|::|: || | |||||| ugUAUUAUUUAAAAGGUCAGGGug 3 21 701 724 [mm9:6:83493250-83493273:-] 0.6115 127 0 -15.17 -0.1310 MIMAT0003477 mmu-miR-669a 70527 Stambp ugUACUUGUACGUGUGUGU-UGa :|| |||| |||||||| || guGUGCACAUACACACACACACg 2 21 173 195 [mm9:6:83493779-83493801:-] 0.4978 144 0 -19.01 -0.6302 MIMAT0003897 mmu-miR-759 70527 Stambp caGUUUUAACAAACGU-GAGACg | || ||||| || ||||| ucCCAACUUGUU--CAUCUCUGc 2 21 527 547 [mm9:6:83493427-83493447:-] 0.6072 125 0 -13.71 -0.6099 MIMAT0003466 mmu-miR-687 70527 Stambp aguaacgacguaagGUCCUAUc ||||||| guaagcuuuuaagaCAGGAUAg 2 9 300 321 [mm9:6:83493653-83493674:-] 0.5238 140 7 -16.63 -0.4073 MIMAT0003471 mmu-miR-692 70527 Stambp cucacuccgcgaguUUCUCUa |||||| aaaaauuaggaugcAAGAGAa 2 8 455 475 [mm9:6:83493499-83493519:-] 0.5403 120 6 -10.88 -0.1127 MIMAT0003472 mmu-miR-693-5p 70527 Stambp cuuuuGAAAGCCUACACCGac :| |:| |||||| gcuuuUUAUUGUUUGUGGCau 3 17 605 625 [mm9:6:83493349-83493369:-] 0.6072 128 0 -11.89 -0.1078 MIMAT0003472 mmu-miR-693-5p 70527 Stambp cuuUUGAAAGCCUACAC-CGAc ||| | | ||||| ||| ucuAACCUCCACAUGUGUGCUg 2 19 129 150 [mm9:6:83493824-83493845:-] 0.4978 122 0 -12.59 -0.3092 MIMAT0003487 mmu-miR-697 70527 Stambp agaGGUGU-CC-UGGUCCU-ACAa ||||| || | |||| ||| gacCCACAUGGUAGAAGGAGUGUa 2 19 83 106 [mm9:6:83493868-83493891:-] 0.4978 120 0 -18.66 -0.1650 MIMAT0003502 mmu-miR-712 70527 Stambp ccauggCGGGCCCACUUCCUc ||| ||||||| guagaaGCCAUUUUGAAGGAu 2 16 581 601 [mm9:6:83493373-83493393:-] 0.6072 143 7 -14.62 -0.9605 MIMAT0004210 mmu-miR-804 70527 Stambp agguccacUCCUUG-UUGAGUgu || ||| |||||| ucacaccaAGCAACUAACUCAaa 3 15 435 457 [mm9:6:83493517-83493539:-] 0.5403 133 0 -12.66 -0.1478 MIMAT0004237 mmu-miR-742 70527 Stambp aaaugggUCGUACCACCGAAAg || || ||||||| auuuugaAGGAU-UUGGCUUUu 2 16 590 610 [mm9:6:83493364-83493384:-] 0.6072 145 7 -11.70 -1.0117 MIMAT0004844 mmu-miR-880 70527 Stambp agaugagucucuccUACCUCAu ||||||| aguuuauugcccccAUGGAGUu 2 9 276 297 [mm9:6:83493677-83493698:-] 0.5238 140 7 -11.00 -0.2083 MIMAT0004856 mmu-miR-105 70527 Stambp ugGUG-UUCGUAGACUCGUGAACc ||| ::|:| | |||||||| auCACUGGGUAAC--AGCACUUGu 2 22 28 49 [mm9:6:83493925-83493946:-] 0.4959 153 7 -18.61 -0.1652 MIMAT0004863 mmu-miR-220 70527 Stambp uuCAC-AGACUGUGACAC-CACc ||| ||| ||: |||| ||| guGUGUUCUCACG-UGUGUGUGc 2 20 157 178 [mm9:6:83493796-83493817:-] 0.4978 124 0 -16.78 -0.3237 MIMAT0004868 mmu-miR-343 70527 Stambp agAC-CCGU-GUACUUCCCUCu || |||| :| ||||||| uuUGUGGCAUUAAUAAGGGAGc 2 19 616 637 [mm9:6:83493337-83493358:-] 0.6072 152 7 -21.25 -0.9775 MIMAT0004882 mmu-miR-466f-3p 70527 Stambp cacacauacacacaCACAUAc |||||| ggaucuuguuuaaaGUGUAUu 2 8 686 706 [mm9:6:83493268-83493288:-] 0.6147 120 6 -5.45 -0.1183 MIMAT0004894 mmu-miR-574-3p 70527 Stambp acACCCACACACGUACU-CGCAc |||| ||||||||| |||| ggUGGG-AUGUGCAUGAGGCGUu 2 21 648 669 [mm9:6:83493305-83493326:-] 0.6147 142 0 -30.71 -0.4110 MIMAT0004897 mmu-miR-654-5p 70527 Stambp uguguacaagaCGUCGAAUGGu | |||||||| gcauuaauaagGGAGCUUACCa 2 12 622 643 [mm9:6:83493331-83493352:-] 0.6072 147 7 -18.31 -0.8873 MIMAT0004930 mmu-miR-466d-5p 70527 Stambp guACAUGUACAUGCGUGUGUGu |||:|| ||| ||||||| ugUGUGCACAUACACACACACa 2 21 172 193 [mm9:6:83493781-83493802:-] 0.4978 172 7 -24.64 -0.8269 MIMAT0004933 mmu-miR-878-3p 70527 Stambp agauGGGUCACACCACA-GUACg :|::||| | ||| |||| ccauUCUGGUGGGAUGUGCAUGa 2 19 641 663 [mm9:6:83493311-83493333:-] 0.6109 126 0 -19.02 -0.2632 MIMAT0004861 mmu-miR-877 70527 Stambp ggGACGCGGU---AGAGGAGAUg :| | ||| | ||||||| caUUCCCCCAAGUUGUCCUCUAa 2 19 111 133 [mm9:6:83493841-83493863:-] 0.4978 145 7 -16.86 -0.4933 MIMAT0005836 mmu-miR-1186 70527 Stambp guacggaAAUUAAGGUCGUGAg | ::| ||||||| ggaucacUGGGUAACAGCACUu 2 16 26 47 [mm9:6:83493927-83493948:-] 0.4959 143 7 -13.65 -0.4120 MIMAT0005843 mmu-miR-1188 70527 Stambp aggACCGGGUUGGAGUGUGGu || || || ||||||| aaaUGACCAAA--UCACACCa 2 19 424 442 [mm9:6:83493532-83493550:-] 0.5403 151 7 -20.02 -1.1552 MIMAT0005844 mmu-miR-466f 70527 Stambp ugUACGUGUA--CGUGUGUGUGCa :||||||| |||||||||| guGUGCACAUACACACACACACGc 2 21 173 196 [mm9:6:83493778-83493801:-] 0.4978 175 7 -29.72 -0.3505 MIMAT0005845 mmu-miR-466k 70527 Stambp agUGUACAUGUACAUGUGUGUGu :::|||:|| ||||||||| guGUGUGUGCACAUACACACACa 2 22 169 191 [mm9:6:83493783-83493805:-] 0.4978 173 7 -26.72 -1.1179 MIMAT0005846 mmu-miR-467f 70527 Stambp acauccACACA-CACACAUAua ||| | |||||| ggaucuUGUUUAAAGUGUAUua 3 16 686 707 [mm9:6:83493267-83493288:-] 0.6147 122 0 -6.15 -0.2187 MIMAT0005849 mmu-miR-1191 70527 Stambp aucccGAUGUAUCAUUCUGac :||: | |||||| ucaucUUAUUUUUUAAGACaa 3 17 397 417 [mm9:6:83493557-83493577:-] 0.5083 128 0 -5.26 -0.1282 MIMAT0007864 mmu-miR-1897-5p 70527 Stambp gggggaGAA-AGAGGUAGGUUUc ||| ||| ||||||| aaaauaCUUCUCUAGAUCCAAAc 2 17 474 496 [mm9:6:83493478-83493500:-] 0.5737 155 7 -15.66 -0.3070 MIMAT0007877 mmu-miR-1894-5p 70527 Stambp ucuccguccaccaUCCCCUCUc |||||||| agggucaacacuaAGGGGAGAc 2 10 325 346 [mm9:6:83493628-83493649:-] 0.5238 145 7 -18.63 -0.5798 MIMAT0009399 mmu-miR-1935 70527 Stambp ucucUAGGCGGUCGGAGACGGa | ::|:: :||||||| cccaACUUGUUCAUCUCUGCCu 2 19 528 549 [mm9:6:83493425-83493446:-] 0.6072 146 7 -19.05 -1.0537 MIMAT0009408 mmu-miR-1943 70527 Stambp agguccacgggucuaGGAGGGaa |||||| uccucuugaaauuuaCCUCCCaa 3 9 510 532 [mm9:6:83493442-83493464:-] 0.6072 120 0 -16.83 -0.1482 MIMAT0009418 mmu-miR-669l 70527 Stambp ugUAUAUGUACGUGUGUGU-UGa :|: |||| |||||||| || guGUGCACAUACACACACACACg 2 21 173 195 [mm9:6:83493779-83493801:-] 0.4978 140 0 -19.13 -0.6302 MIMAT0009431 mmu-miR-1958 70527 Stambp ugAAUGACGA-AGGUGAAAGGAu ||::||:| |: :|||||| ugUUGUUGUUGUUGUUUUUCCUu 2 21 365 387 [mm9:6:83493587-83493609:-] 0.5238 143 6 -14.88 -0.1336 MIMAT0009438 mmu-miR-1965 70527 Stambp acgCGGUGAUGCCGGG-CCGAa ||| | || |||| |||| caaGCC-CAACAGCCCAGGCUc 2 19 53 73 [mm9:6:83493901-83493921:-] 0.4968 124 0 -20.90 -0.1140 MIMAT0009455 mmu-miR-1983 70527 Stambp ucuuuuGUACGAGGUC-CACUc ::|||||||| |||| uuguguUGUGCUCCAGAGUGA- 2 16 754 774 [mm9:6:83493200-83493220:-] 0.6083 131 0 -20.40 -0.4962 MIMAT0009459 mmu-miR-1982* 70527 Stambp ggagggguccugGGAGGGUu ||||||| ucuugaaauuuaCCUCCCAa 2 9 513 532 [mm9:6:83493442-83493461:-] 0.6072 140 7 -18.33 -1.2597 MIMAT0009461 mmu-miR-1982.2 70527 Stambp gacacccucuuguaUCCCACu |||||| uuauuuaaaaggucAGGGUGu 2 8 705 725 [mm9:6:83493249-83493269:-] 0.6115 120 6 -12.11 -0.2180 MIMAT0011217 mmu-miR-2141 70527 Stambp uugaaaagacuGUGGAGGa :|||||| cucuugaaauuUACCUCCc 2 9 512 530 [mm9:6:83493444-83493462:-] 0.6072 124 6 -14.15 -0.1206 MIMAT0011286 mmu-miR-2182 70527 Stambp gcgccgcacccuuuACACCGca |||||| ggcuuuuuauuguuUGUGGCau 3 9 604 625 [mm9:6:83493349-83493370:-] 0.6072 120 0 -9.79 -0.1088 MIMAT0015641 mmu-miR-3470b 70527 Stambp gguCGGACCA-GAUGUCUCACu |: | || || ||||||| cuuGUGUUGUGCUCCAGAGUGa 2 19 753 774 [mm9:6:83493200-83493221:-] 0.6083 153 7 -17.50 -0.7755 MIMAT0000125 mmu-miR-23b 70527 Stambp ccAUUAGGGA--CCG-UUACACUa || |:::| | | ||||||| cuUAUUUUUUAAGACAAAUGUGAa 2 20 401 424 [mm9:6:83493550-83493573:-] 0.5083 145 7 -8.39 -1.0894 MIMAT0000127 mmu-miR-29b 70527 Stambp uuGUGACU-AAAGUUUAC-CACGAu | || | | || ||| ||||| ucCUCUAACCUCCACAUGUGUGCUg 2 22 126 150 [mm9:6:83493824-83493848:-] 0.4978 120 0 -12.05 -0.3170 MIMAT0000128 mmu-miR-30a 70527 Stambp gaAGGUCAGCUCCUACAAAUgu | || | || |||||| caUACA-UGGAUCUUGUUUAaa 3 21 679 699 [mm9:6:83493275-83493295:-] 0.6147 126 0 -6.88 -0.1141 MIMAT0000130 mmu-miR-30b 70527 Stambp ucgacucACAUCCUACAAAUgu || | |||||| ccauacaUGGAUCUUGUUUAaa 3 16 678 699 [mm9:6:83493275-83493296:-] 0.6147 123 0 -5.48 -0.1141 MIMAT0000135 mmu-miR-125a-5p 70527 Stambp aguguccAAUUUCCCAGAGUCCCu ||||| | |||||| guauuauUUAAAAG--GUCAGGGu 2 18 702 723 [mm9:6:83493251-83493272:-] 0.6115 122 6 -15.50 -0.1112 MIMAT0000136 mmu-miR-125b-5p 70527 Stambp aguguucaaucccagAGUCCCu |||||| guauuauuuaaaaggUCAGGGu 2 8 702 723 [mm9:6:83493251-83493272:-] 0.6115 120 6 -13.45 -0.1225 MIMAT0000144 mmu-miR-132 70527 Stambp gcUGGUACCGACAUCUGACAAu ||:| || | |||||||| acACUAAGG--GGAGACUGUUg 2 21 332 351 [mm9:6:83493623-83493642:-] 0.5238 157 7 -18.47 -0.3220 MIMAT0000145 mmu-miR-133a 70527 Stambp gucgaccaACUUCCCCUGGUUu |||| |||||| gacaaaugUGAAAAUGACCAAa 2 15 413 434 [mm9:6:83493540-83493561:-] 0.5403 122 6 -13.41 -0.1355 MIMAT0000146 mmu-miR-134 70527 Stambp ggGGAGACCAGUUGGUC-AGUGu :|| | | || ||| |||| cuUCUAUAAUAAAACAGCUCACu 2 21 732 754 [mm9:6:83493220-83493242:-] 0.6083 120 0 -13.38 -0.8171 MIMAT0000147 mmu-miR-135a 70527 Stambp agUGUAUCCUUAUUUUUCGGUAu :|| | :| |:||||||| guGCAAAACUGU-AGAAGCCAUu 2 22 571 592 [mm9:6:83493382-83493403:-] 0.6072 147 7 -11.26 -0.6663 MIMAT0000165 mmu-miR-155 70527 Stambp ugGGGAUAGUGUUAAUCGUAAUu :::|||::: |:|||||| cuUUUUAUUGUUUGUGGCAUUAa 2 22 606 628 [mm9:6:83493346-83493368:-] 0.6072 141 6 -13.62 -0.1218 MIMAT0000208 mmu-miR-10b 70527 Stambp guguuuaagccaagauGUCCCAu |||||| guauuauuuaaaagguCAGGGUg 2 8 702 724 [mm9:6:83493250-83493272:-] 0.6115 120 6 -13.86 -0.1607 MIMAT0000229 mmu-miR-199a-5p 70527 Stambp cuuguccAUC-AGACUUGUGACCc ||| || |||||||| acuucucUAGAUCCAAACACUGGc 2 17 479 502 [mm9:6:83493472-83493495:-] 0.5737 155 7 -14.54 -0.6924 MIMAT0000238 mmu-miR-205 70527 Stambp gucugaggccaccuuACUUCCu |||||| cuguagaagccauuuUGAAGGa 2 8 579 600 [mm9:6:83493374-83493395:-] 0.6072 120 6 -16.07 -0.1283 MIMAT0000247 mmu-miR-143 70527 Stambp cucgaugUCACGAAGUAGAGu | | |||||||| ccucccaACUUGUUCAUCUCu 2 15 525 545 [mm9:6:83493429-83493449:-] 0.6072 146 7 -11.33 -0.7024 MIMAT0000247 mmu-miR-143 70527 Stambp cucgaugucacgaAGUAGAGu ||||||: ccuuaauuugaaaUCAUCUUa 2 9 384 404 [mm9:6:83493570-83493590:-] 0.5000 124 0 -9.80 -0.2323 MIMAT0000248 mmu-miR-30e 70527 Stambp gaaGGUCAGUUCCU---ACAAAUgu ||| || ||| |||||| cccCCAUACAUGGAUCUUGUUUAaa 3 20 675 699 [mm9:6:83493275-83493299:-] 0.6147 134 0 -11.08 -0.1164 MIMAT0000368 mmu-miR-291a-3p 70527 Stambp cguGUGUUUCACCUUCGUGAAa ||| ::|| ||||||| gauCACUGGGUAACAGCACUUg 2 20 27 48 [mm9:6:83493926-83493947:-] 0.4959 155 7 -14.17 -0.1495 MIMAT0000372 mmu-miR-294 70527 Stambp uguguGUUUUCCCU--UCGUGAAa || :|| | ||||||| uggauCACUGGGUAACAGCACUUg 2 18 25 48 [mm9:6:83493926-83493949:-] 0.4959 144 7 -16.24 -0.1495 MIMAT0000373 mmu-miR-295 70527 Stambp ucugAGU-UUUCAUCAUCGUGAAa ||| ::||| ||||||| uggaUCACUGGGUAACAGCACUUg 2 20 25 48 [mm9:6:83493926-83493949:-] 0.4959 154 7 -15.26 -0.1510 MIMAT0004577 mmu-miR-299 70527 Stambp uucGCCAA-AUGGCAGGGUGUAu | ||| | | ||||||| gcuCAGUUCUUGGGACCCACAUg 2 20 70 92 [mm9:6:83493882-83493904:-] 0.4978 146 7 -23.24 -0.1580 MIMAT0000380 mmu-miR-302a 70527 Stambp agUGGUUUUGUACCUUCGUGAAu |:|| : :| ||||||| ggAUCACUGGGUAACAGCACUUg 2 22 26 48 [mm9:6:83493926-83493948:-] 0.4959 145 7 -15.85 -0.1495 MIMAT0000514 mmu-miR-30c 70527 Stambp cgacucucACAUCCUACAAAUgu || | |||||| cccauacaUGGAUCUUGUUUAaa 3 16 677 699 [mm9:6:83493275-83493297:-] 0.6147 123 0 -5.48 -0.1141 MIMAT0000515 mmu-miR-30d 70527 Stambp gaaGGUCAGCCCCU---ACAAAUgu ||| | ||| |||||| cccCCAUACAUGGAUCUUGUUUAaa 3 20 675 699 [mm9:6:83493275-83493299:-] 0.6147 126 0 -10.02 -0.1153 MIMAT0000532 mmu-miR-23a 70527 Stambp ccuuuagggaccgUUACACUa ||||||| auuuuuuaagacaAAUGUGAa 2 9 404 424 [mm9:6:83493550-83493570:-] 0.5083 140 7 -8.27 -1.0894 MIMAT0000555 mmu-miR-324-5p 70527 Stambp ugugguuacgggauccCCUACGc |||||| acuaacucaaaaauuaGGAUGCa 2 8 447 469 [mm9:6:83493505-83493527:-] 0.5403 120 6 -10.88 -0.1305 MIMAT0004651 mmu-miR-340-5p 70527 Stambp uuAGU--CAGAGU-AACGAA-AUAUu ||| || |:| || ||| |||| ggUCAGGGUGUUAUUUUCUUCUAUAa 2 21 715 740 [mm9:6:83493234-83493259:-] 0.6115 122 0 -10.00 -1.1762 MIMAT0000609 mmu-miR-351 70527 Stambp guccgaguuucccgaggAGUCCCu |||||| guguauuauuuaaaaggUCAGGGu 2 8 700 723 [mm9:6:83493251-83493274:-] 0.6115 120 6 -15.08 -0.1249 MIMAT0000612 mmu-miR-135b 70527 Stambp aguguauccUUAC-UUUUCGGUAu | || |:||||||| cugugcaaaACUGUAGAAGCCAUu 2 15 569 592 [mm9:6:83493382-83493405:-] 0.6072 149 7 -11.41 -0.6663 MIMAT0000648 mmu-miR-10a 70527 Stambp guguuuaagccuagauGUCCCAu |||||| guauuauuuaaaagguCAGGGUg 2 8 702 724 [mm9:6:83493250-83493272:-] 0.6115 120 6 -13.46 -0.1592 MIMAT0000656 mmu-miR-139-5p 70527 Stambp gaCCUCUGUGCACG---UGACAUCu ||: |: :|||| ||||||| agGGGCAUCUGUGCAAAACUGUAGa 2 21 561 585 [mm9:6:83493389-83493413:-] 0.6072 155 7 -25.26 -1.0818 MIMAT0000659 mmu-miR-212 70527 Stambp accggcACUGACCUCUGACAAu | | |||||||||| caacacUAAGGGGAGACUGUUg 2 17 330 351 [mm9:6:83493623-83493644:-] 0.5238 156 7 -19.56 -0.3247 MIMAT0000711 mmu-miR-365 70527 Stambp uauuccUAAAAAUCCCCGUAAu ||| || | |||||| cuuuuuAUUGUUUGUGGCAUUa 2 17 606 627 [mm9:6:83493347-83493368:-] 0.6072 132 6 -8.84 -0.1398 MIMAT0000766 mmu-miR-335-5p 70527 Stambp uguaaaAAGCAAUAACGAGAACu ||| |:|| |||||| cuggccUUC--UGUUCCUCUUGa 2 18 498 518 [mm9:6:83493456-83493476:-] 0.6072 126 6 -11.08 -0.1591 MIMAT0000769 mmu-miR-133b 70527 Stambp aucgaccaACUUCCCCUGGUUu |||| |||||| gacaaaugUGAAAAUGACCAAa 2 15 413 434 [mm9:6:83493540-83493561:-] 0.5403 122 6 -11.51 -0.1355 MIMAT0004745 mmu-miR-384-5p 70527 Stambp uguaACGGAUCCUUAACAAAUgu | | |:| ||||||| cccaUACAUGGAUCUUGUUUAaa 3 20 677 699 [mm9:6:83493275-83493297:-] 0.6147 131 0 -9.13 -0.1141 MIMAT0001418 mmu-miR-431 70527 Stambp acgUACUGCCGGACGUUCUgu || | || ||||||| aaaAUUA-GG-AUGCAAGAga 3 19 456 474 [mm9:6:83493500-83493518:-] 0.5403 126 0 -12.99 -0.1618 MIMAT0001420 mmu-miR-433 70527 Stambp uguggcuccucgggUAGUACUa ||||||| -------aucucaaAUCAUGAa 2 9 1 15 [mm9:6:83493959-83493973:-] 0.6564 140 7 -9.54 -0.3720 MIMAT0003374 mmu-miR-302b 70527 Stambp gaugAUUUUGU-ACCU----UCGUGAAu |::| || |||: ||||||| gagaUGGAUCACUGGGUAACAGCACUUg 2 20 21 48 [mm9:6:83493926-83493953:-] 0.4959 145 7 -16.30 -0.1495 MIMAT0003377 mmu-miR-302d 70527 Stambp ugugAGUUUGU-ACCU----UCGUGAAu | :| || |||: ||||||| gagaUGGAUCACUGGGUAACAGCACUUg 2 20 21 48 [mm9:6:83493926-83493953:-] 0.4959 141 7 -15.62 -0.1495 MIMAT0003727 mmu-miR-374 70527 Stambp gugaaucguccaacaUAAUAUa |||||| agcgaauaaauguaaAUUAUAa 2 8 215 236 [mm9:6:83493738-83493759:-] 0.4978 120 6 -4.52 -0.1530 MIMAT0004889 mmu-miR-504 70527 Stambp cuaucucacgUCUGGUCCCAga ||::|||||| auuauuuaaaAGGUCAGGGUgu 3 13 704 725 [mm9:6:83493249-83493270:-] 0.6115 132 0 -17.09 -0.1826

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054173 Stambp Mus musculus 70527

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Stambp mghv-miR-M1-9 beg:409 end:424 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& || ||||||||| &5' ----------AGACAAATGTGA 3' Stambp mmu-miR-135b beg:577 end:592 pic:3' AGTGTATCCTTAC-TTTTCGGTAT 5'& || |.||||||| &5' -----------TGTAGAAGCCAT- 3' Stambp mmu-miR-199a-5p beg:483 end:502 pic:3' CTTGTCCATC-AGACTTGTGACCC 5'& ||| || |||||||| &5' -------TAGATCCAAACACTGG- 3' Stambp mmu-miR-199bstar beg:483 end:502 pic:3' CTTGTCCATC-AGATTTGTGACCC 5'& ||| || ||||||||| &5' -------TAGATCCAAACACTGG- 3' Stambp mmu-miR-1 beg:99 end:117 pic:3' TATGTATGAAGAAATGTAAGGT 5'& . ||| ||||||| &5' --GTGTACCG----ACATTCC- 3' Stambp mmu-miR-139-5p beg:568 end:586 pic:3' GACCTCTGTGCACG---TGACATCT 5'& |||| |||||||| &5' ----------GTGCAAAACTGTAGA 3' Stambp mmu-miR-483star beg:87 end:105 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& |.|| || ||||||| &5' ---ATGGTAGA--AGGAGTG- 3' Stambp mmu-miR-212 beg:338 end:352 pic:3' ACCGGCACTGACCTCTGACAAT 5'& ||||||||||. &5' -----------GGAGACTGTTG 3' Stambp mcmv-miR-M23-2 beg:274 end:292 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |.|| |.. |||||||| &5' --GTTT-ATT---GCCCCCAT 3' Stambp mcmv-miR-M23-2 beg:663 end:682 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||.| || |||||||| &5' -CGTTC-ACA---GCCCCCAT 3' Stambp mmu-miR-654-5p beg:630 end:644 pic:3' TGTGTACAAGACGTCGAATGGT 5'& | ||||||||| &5' -----------GGAGCTTACCA 3' Stambp mmu-miR-1894-5p beg:335 end:346 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||||||| &5' -------------AGGGGAGA- 3' Stambp mcmv-miR-M23-2 beg:99 end:121 pic:3' GGCGAAC-TGGCTCC--GGGGGTA 5'& | || ||||| |||||| &5' --GAGTGTACCGACATTCCCCCA- 3' Stambp mghv-miR-M1-3 beg:745 end:756 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& ||||||.| &5' -------------GCTCACTT- 3' Stambp mmu-let-7b beg:521 end:551 pic:3' TTGGTGTGTTGGAT-------GATGGAGT 5'& ||| | ||||.|. ||.|||. &5' -ACCTCCCAACTTGTTCATCTCTGCCTT- 3' Stambp mmu-miR-101a beg:135 end:153 pic:3' AAGTCAATAGTGT---CATGACAT 5'& |||| ||.||||. &5' ---------CACATGTGTGCTGTG 3' Stambp mmu-miR-101b beg:135 end:153 pic:3' AAGTCGATAGTGT---CATGACAT 5'& |||| ||.||||. &5' ---------CACATGTGTGCTGTG 3' Stambp mmu-miR-105 beg:25 end:49 pic:3' TGGTG-TTCGTAGACTCGTGAACC 5'& |.||| ..|.| | |||||||| &5' ATCACTGGGTAAC--AGCACTTG- 3' Stambp mmu-miR-1187 beg:171 end:194 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& |. |||||||||||||||| &5' -TGTGCACATACACACACACA-- 3' Stambp mmu-miR-1188 beg:424 end:443 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& || |||| |||||||| &5' ---TGA-CCAAA-TCACACCA 3' Stambp mmu-miR-133a beg:418 end:435 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& |||| ||||||| &5' --------TGAAAATGACCAAA 3' Stambp mmu-miR-133b beg:418 end:435 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& |||| ||||||| &5' --------TGAAAATGACCAAA 3' Stambp mmu-miR-135a beg:570 end:592 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& .|| |.||||||| &5' --GCAAAACTGT-AGAAGCCAT- 3' Stambp mmu-miR-145star beg:13 end:23 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||||.| &5' --------------CCAGGGA- 3' Stambp mmu-miR-145star beg:306 end:325 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& .||| |||| .||||| &5' TAAG-ACAGGA----TAGGAA- 3' Stambp mmu-miR-146a beg:60 end:81 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |.|||| || ||||||||. &5' AGCCCA-GGC--TCAGTTCTT- 3' Stambp mmu-miR-146a beg:147 end:168 pic:3' TTGGGTACCTTAAGT-CAAGAGT 5'& |..||| || ||||||| &5' ---CTGTGGTATGTGTGTTCTCA 3' Stambp mmu-miR-146b beg:60 end:81 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& |||| || ||||||||. &5' AGCCCA-GGC--TCAGTTCTT- 3' Stambp mmu-miR-146b beg:146 end:168 pic:3' TCGGATACCTTAAGT-CAAGAGT 5'& ||.||| || ||||||| &5' ---CTGTGGTATGTGTGTTCTCA 3' Stambp mmu-miR-155 beg:609 end:629 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& .||| . |.||||||| &5' ----TTATTGTTTGTGGCATTAA 3' Stambp mmu-miR-183 beg:132 end:153 pic:3' TCACTTAAGATGGT-----CACGGTAT 5'& || ||| ||||..|. &5' --------CT-CCACATGTGTGCTGTG 3' Stambp mmu-miR-188-3p beg:633 end:655 pic:3' ACGTTTGGGACGTACACCCTC 5'& || ||| |||||| &5' -GCTTACCATTCTGGTGGGA- 3' Stambp mmu-miR-1927 beg:69 end:95 pic:3' AGTCAGGGATTGTAGGTCT-CCAG 5'& |||||.|.|.. | ||| ||| &5' TCAGTTCTTGGGACCCACATGGT- 3' Stambp mmu-miR-1940 beg:112 end:133 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& .||| || ||||||.| &5' -----TTCC-CCCAAGTTGTCCTCTA- 3' Stambp mmu-miR-1942 beg:551 end:572 pic:3' GTTGGTCTACTTCTGTAGACT 5'& .||.| || .|.|||||| &5' -GACTAAATAGGGGCATCTG- 3' Stambp mmu-miR-1955 beg:65 end:86 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& |.||| |||| ||.|||||| &5' --AGGCT-CAGT---TCTTGGGAC- 3' Stambp mmu-miR-1957 beg:747 end:768 pic:3' CAGT--ATACGAGATGGTGAC 5'& ||| |.||.| |.| | &5' -TCACTTGTGTTGTGCTCC-- 3' Stambp mmu-miR-1968 beg:245 end:266 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& .||| ||| ||||||| &5' ----TACCCCCCTCTTAAGCTGCA 3' Stambp mmu-miR-196astar beg:336 end:358 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& .|| || | ||||||..| &5' --GGGGAGACTGTTGTTGTTG- 3' Stambp mmu-miR-196astar beg:348 end:367 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& |. ||| ||||||..| &5' ----GTTGTTG-TTGTTGTTG- 3' Stambp mmu-miR-196astar beg:360 end:379 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& |. ||| ||||||..| &5' ----GTTGTTG-TTGTTGTTG- 3' Stambp mmu-miR-1971 beg:534 end:553 pic:3' AGAGTCGGGTCGGAAATG 5'& .||| |.| ||||||. &5' -TTCATCTCTGCCTTTG- 3' Stambp mmu-miR-19astar beg:560 end:582 pic:3' CATCACGTTGATACGTTTTGAT 5'& .| ||| ||.|||||||||. &5' --GG-GCATCTGTGCAAAACTG 3' Stambp mmu-miR-201 beg:20 end:39 pic:3' TTCTTGTTACGGAATGACTCAT 5'& .||| | ||||.||| &5' ------GATGGATCACTGGGTA 3' Stambp mmu-miR-202-5p beg:313 end:325 pic:3' TTTCTTCATATACGTATCCTT 5'& | ||||||| &5' ------------GGATAGGAA 3' Stambp mmu-miR-205 beg:579 end:601 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& .||| || ||||||| &5' TAGAAGCCATTT---TGAAGGA 3' Stambp mmu-miR-20bstar beg:568 end:585 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |||| ||||.|| &5' ------GTGCAAA-ACTGTAG- 3' Stambp mmu-miR-2141 beg:511 end:530 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||| .|||||| &5' --CTTGAAATTTACCTCC- 3' Stambp mmu-miR-215 beg:699 end:720 pic:3' CAGACAGTTTAGTA--TCCAGTA 5'& ||| ||. |||||| &5' ---TGTATTATTTAAAAGGTCA- 3' Stambp mmu-miR-22star beg:584 end:603 pic:3' ATTTCGAACGGTG--ACTTCTTGA 5'& ||||. |||||.|.| &5' --------GCCATTTTGAAGGATT 3' Stambp mmu-miR-291a-3p beg:27 end:48 pic:3' CGTGTGTTTCACCTTCGTGAAA 5'& ||| .|| ||||||| &5' ---CACTGGGTAACAGCACTT- 3' Stambp mmu-miR-294 beg:27 end:48 pic:3' TGTGTGTTTTCCCT---TCGTGAAA 5'& ||| ||| ||||||| &5' ---CACT---GGGTAACAGCACTT- 3' Stambp mmu-miR-295 beg:26 end:48 pic:3' TCTGAGTT-TTCATCATCGTGAAA 5'& || ||| ..||| ||||||| &5' -GA-TCACTGGGTAACAGCACTT- 3' Stambp mmu-miR-29b beg:714 end:728 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& ||| ||||.|| &5' ----------TCAG--GGTGTTA 3' Stambp mmu-miR-29c beg:714 end:728 pic:3' ATTGGCTAAAGTTTACCACGAT 5'& ||| ||||.|| &5' ---------TCAG--GGTGTTA 3' Stambp mmu-miR-302a beg:26 end:49 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& |||| .. |||||||. &5' TCACTGGGTAAC---AGCACTTG 3' Stambp mmu-miR-302b beg:28 end:49 pic:3' GATGATTTTGTACCT----TCGTGAAT 5'& || |||. |||||||. &5' --------AC-TGGGTAACAGCACTTG 3' Stambp mmu-miR-302d beg:27 end:49 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& |||| .. |||||||. &5' -CACTGGGTAAC---AGCACTTG 3' Stambp mmu-miR-30c-2star beg:523 end:532 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |||||| &5' ---------------CTCCCA- 3' Stambp mmu-miR-322star beg:347 end:369 pic:3' CACAACGTC-GCGAAGTACAAA 5'& |||||. | .|.| |||| &5' -TGTTGTTGTTGTTGT-TGTT- 3' Stambp mmu-miR-322star beg:360 end:382 pic:3' CACAACGTC-GCGAAGTACAAA 5'& |||||. | .|.| ||||| &5' -TGTTGTTGTTGTTGT-TGTTT 3' Stambp mmu-miR-328 beg:313 end:332 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& ||| .|| ||||.|| &5' --GGATA---GGAAAGGGTCA- 3' Stambp mmu-miR-33 beg:213 end:229 pic:3' ACGTTACGTTGATGTTACGTG 5'& ||.| ||||.| &5' ------GCGAATA-AATGTA- 3' Stambp mmu-miR-331-5p beg:72 end:94 pic:3' CCTAGGGACCCTGGTATGGATC 5'& .|.|.||||||| || |.| &5' --GTTCTTGGGACCC-ACATGG 3' Stambp mmu-miR-337-3p beg:281 end:301 pic:3' TCCGTA-GTATATCCTCGACTT 5'& || ||| ||||.|||. &5' --GCCCCCAT---GGAGTTGAG 3' Stambp mmu-miR-343 beg:614 end:637 pic:3' AGAC-CCGTGTAC-TTCCCTCT 5'& |.|| ||||. ||||||| &5' TTTGTGGCATTAATAAGGGAG- 3' Stambp mmu-miR-344 beg:14 end:32 pic:3' TGTCAGTCCGAAACCGATCTAGT 5'& |||| |.||||| &5' -----CAGGGAGA---TGGATCA 3' Stambp mmu-miR-3470b beg:753 end:773 pic:3' GGTCGGACCA-GATGTCTCACT 5'& |. | || || |||||||| &5' ---GTGTTGTGCTCCAGAGTGA 3' Stambp mmu-miR-3471 beg:671 end:693 pic:3' TTACGGA---ATGTCAACCTAGAGT 5'& ||| |||| |||||||. &5' ---GCCCCCATACA--TGGATCTT- 3' Stambp mmu-miR-3475 beg:757 end:771 pic:3' AAGTTTGGTACACGGAGGTCT 5'& |||| ||||||| &5' ---------TGTG-CTCCAGA 3' Stambp mmu-miR-361 beg:630 end:652 pic:3' CATGGGGACCTC------TAAGACTATT 5'& |||| ||||||.|.. &5' --------GGAGCTTACCATTCTGGTGG 3' Stambp mmu-miR-378 beg:499 end:518 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& ||||||| .||| ||. | &5' CCTTCTG-TTCC---TCTTG- 3' Stambp mmu-miR-378star beg:712 end:723 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& .||||||. &5' -------------GGTCAGGG- 3' Stambp mmu-miR-384-3p beg:309 end:325 pic:3' TAACACTTGTTAAAGATCCTTA 5'& .|||. |||||| &5' ------GACAGGA--TAGGAA- 3' Stambp mmu-miR-425 beg:712 end:730 pic:3' AGTTGCCCTCACTAG---CACAGTAA 5'& |.|| ||||.||| &5' -----------GGTCAGGGTGTTATT 3' Stambp mmu-miR-450b-5p beg:565 end:587 pic:3' ATAAGTCCTTGTA-TGACGTTTT 5'& || .|| ||||.|.|| &5' ---TCTGT-GCAAAACTGTAGAA 3' Stambp mmu-miR-450b-5p beg:559 end:579 pic:3' ATAAGTCCTTGTATG-ACGTTTT 5'& .|||..||| ||||||| &5' ----TAGGGGCATCTGTGCAAAA 3' Stambp mmu-miR-466a-3p beg:141 end:162 pic:3' AGAATACACACG-CA-CATACATAT 5'& ||||||| || ||||||.|. &5' -----TGTGTGCTGTGGTATGTGTG 3' Stambp mmu-miR-466a-5p beg:169 end:192 pic:3' ATACATGTACATGTGTGTGTAT 5'& |.|||.|| |||||||||| &5' TGTGTGCACATACACACACA-- 3' Stambp mmu-miR-466b-3-3p beg:141 end:161 pic:3' AGAATACACACG-CA-CATACATAA 5'& ||||||| || ||||||.| &5' -----TGTGTGCTGTGGTATGTGT- 3' Stambp mmu-miR-466b-3p beg:141 end:162 pic:3' AGAATACACACG-CA-CATACATAT 5'& ||||||| || ||||||.|. &5' -----TGTGTGCTGTGGTATGTGTG 3' Stambp mmu-miR-466c-3p beg:141 end:162 pic:3' AGAATACACACG-CA-CATACATAT 5'& ||||||| || ||||||.|. &5' -----TGTGTGCTGTGGTATGTGTG 3' Stambp mmu-miR-466c-5p beg:171 end:194 pic:3' ATACATGTACGTGTGTGTGTAG 5'& |.|||.|| .||||||||| &5' TGTGTGCACATACACACACA-- 3' Stambp mmu-miR-466d-3p beg:141 end:162 pic:3' GATACACACG-CA-CATACATAT 5'& ||||||| || ||||||.|. &5' ---TGTGTGCTGTGGTATGTGTG 3' Stambp mmu-miR-466d-5p beg:170 end:194 pic:3' GTACATGTACATGCGTGTGTGT 5'& .|||.|| ||| |||||||| &5' -GTGTGCACATACACACACACA 3' Stambp mmu-miR-466e-3p beg:141 end:162 pic:3' AGAATACACACG-CA-CATACATAT 5'& ||||||| || ||||||.|. &5' -----TGTGTGCTGTGGTATGTGTG 3' Stambp mmu-miR-466e-5p beg:169 end:192 pic:3' ATACATGTACATGTGTGTGTAG 5'& |.|||.|| |||||||||| &5' TGTGTGCACATACACACACA-- 3' Stambp mmu-miR-466f beg:164 end:187 pic:3' TGTACGTGTACGTGTGTGTGCA 5'& ||.|| ..||||||.|||| &5' ACGTGTGTGTGCACATACAC-- 3' Stambp mmu-miR-466f-5p beg:172 end:193 pic:3' GTACGTGTACGTGTGTGTGCAT 5'& .||||||| ||||||||| &5' -GTGCACATACACACACAC--- 3' Stambp mmu-miR-466h beg:173 end:198 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& |.||||.| |||| |||.|| &5' TGCACATACACACACACACGCA 3' Stambp mmu-miR-466j beg:173 end:198 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& |.||||.| |||| |||.|| &5' -TGCACATACACACACACACGCA 3' Stambp mmu-miR-466k beg:171 end:192 pic:3' AGTGTACATGTACATGTGTGTGT 5'& .|||.|| |||||||||| &5' ----GTGTGCACATACACACACA 3' Stambp mmu-miR-467a-1star beg:141 end:163 pic:3' CACATCCACACACATACATATA 5'& |||| | |||| ||||||.|.| &5' GTGT-GCTGTG-GTATGTGTGT 3' Stambp mmu-miR-467dstar beg:141 end:163 pic:3' CACATCCACACACATACATATA 5'& |||| | |||| ||||||.|.| &5' GTGT-GCTGTG-GTATGTGTGT 3' Stambp mmu-miR-467estar beg:138 end:163 pic:3' TATATCC-ACACACATACATATA 5'& ||.|. | |||| ||||||.|.| &5' ATGTGTGCTGTG-GTATGTGTGT 3' Stambp mmu-miR-467g beg:140 end:162 pic:3' TATATAC-ACACACATACATAT 5'& ||.|.|| |||| ||||||.|. &5' ATGTGTGCTGTG-GTATGTGTG 3' Stambp mmu-miR-467h beg:165 end:185 pic:3' TGTATATGTACGTGTGTGAATA 5'& ||.|.|. ||||||.|| &5' ACGTGTGTGTGCACATAC---- 3' Stambp mmu-miR-468 beg:183 end:207 pic:3' GTCTGTGTGCGTGTAGTCAGTAT 5'& || |||||||||.|||| |.| &5' CACACACACGCATATCAATTA-- 3' Stambp mmu-miR-489 beg:713 end:730 pic:3' CGACGGTATATACACCACAGTAA 5'& |.|| |||||.||| &5' ---GTCAG------GGTGTTATT 3' Stambp mmu-miR-501-5p beg:584 end:603 pic:3' AAAGTGGGTCCCTGTTTCCTAA 5'& .|| ..||||||| &5' ----GCCATTT--TGAAGGATT 3' Stambp mmu-miR-501-5p beg:311 end:330 pic:3' AAAGTGGGTCCC--TGTTTCCTAA 5'& |||| . |||||.| &5' -------CAGGATAGGAAAGGGT- 3' Stambp mmu-miR-574-5p beg:174 end:197 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& .||||. |||||||||||.| &5' GCACATACACACACACACGC--- 3' Stambp mmu-miR-669c beg:174 end:197 pic:3' TGTGTGTAGGTGTGTGT-TGATA 5'& .||||.| |||||||| .| &5' GCACATACACACACACACGC--- 3' Stambp mmu-miR-669c beg:182 end:207 pic:3' TGTGTGTAGGTGTGT-GTTGATA 5'& ||||||| |.||.| |||.|| &5' ACACACACACGCATATCAATTA- 3' Stambp mmu-miR-669d beg:164 end:186 pic:3' TGTATATGTACGTGTGTGTTCA 5'& ||.|.|. ||||||.||| &5' ACGTGTGTGTGCACATACA--- 3' Stambp mmu-miR-669e beg:301 end:321 pic:3' TACTTGTACGTG---TGTGTTCTGT 5'& || | |||.||.| &5' --------GCTTTTAAGACAGGATA 3' Stambp mmu-miR-669e beg:172 end:198 pic:3' TACTTGTACGTGTGTGTTC-TGT 5'& .|| |||| |||||||| .|| &5' GTGCACATACACACACACACGCA 3' Stambp mmu-miR-669j beg:646 end:661 pic:3' ACAAACGTACACTCATATACGT 5'& |||.| ||.|||| &5' ---------GTGGG-ATGTGCA 3' Stambp mmu-miR-669l beg:164 end:189 pic:3' TGTATATGTACGTGTGTGT-TGA 5'& ||.|.|. ||||||.||| || &5' ACGTGTGTGTGCACATACACAC- 3' Stambp mmu-miR-669m beg:140 end:163 pic:3' TATACAAACACACC-TACATATA 5'& ||.||| ||||| ||||.|.| &5' ATGTGTGC-TGTGGTATGTGTGT 3' Stambp mmu-miR-669n beg:174 end:194 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& .||||.| |||||||| &5' GCACATACACACACACA--- 3' Stambp mmu-miR-669o beg:176 end:198 pic:3' TGTATTTGTACGTGTGTGTTGAT 5'& ||||| ||| |||||.|| &5' ACATACACACACACACGCA---- 3' Stambp mmu-miR-670 beg:1 end:23 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& ||| |||. || |||||| &5' -TCAAATCATGAAC-CAGGGA- 3' Stambp mmu-miR-672 beg:185 end:206 pic:3' AGTGTGTGT-CATGTGGTTGGAGT 5'& |||||||| | |.|.|||.. &5' -CACACACACGCATATCAATT--- 3' Stambp mmu-miR-673-5p beg:132 end:154 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& ||||| | ||||||. &5' CTCCACATGT--GTGCTGTGG- 3' Stambp mmu-miR-676 beg:52 end:72 pic:3' TCGAGTTGTTGGAGTCCTGCC 5'& ||| |||||.|| |||| | &5' AGCCCAACAGCC-CAGG-C-- 3' Stambp mmu-miR-677 beg:16 end:35 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& .|.|| |||||||. &5' --GGGAGATGG--ATCACTGG- 3' Stambp mmu-miR-687 beg:301 end:322 pic:3' AGTAACGACGTAAG-GTCCTATC 5'& ||| |||||||| &5' -----GCTTTTAAGACAGGATAG 3' Stambp mmu-miR-697 beg:638 end:658 pic:3' AGAGGTGT--CCTGGTCCTACAA 5'& |||. || .|||||| &5' ---CCATTCTGGT--GGGATGT- 3' Stambp mmu-miR-705 beg:239 end:259 pic:3' AC-GGGTGGGGTGGAGGGTGG 5'& | ||.||||| ||||..| &5' -GTCCTACCCC-CCTCTTA-- 3' Stambp mmu-miR-764-3p beg:493 end:508 pic:3' TGTCAACGGTGATACCGGAGGA 5'& ||| ||||||.|| &5' --------CAC--TGGCCTTCT 3' Stambp mmu-miR-877 beg:113 end:133 pic:3' GGGACGCGGTAGAGGAGATG 5'& ||| |. | |||||| &5' CCCCAAGTTGT--CCTCTA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stambp RAID00064703 mmu-miR-340-5p miRNA MIMAT0004651 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00066283 mmu-miR-133a-3p miRNA MIMAT0000145 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00154763 mmu-miR-132-3p miRNA MIMAT0000144 Stambp mRNA 70527 CLIP-seq//Prediction 0.6308 Stambp RAID00161527 mmu-miR-1894-5p miRNA MIMAT0007877 Stambp mRNA 70527 CLIP-seq//Prediction 0.6308 Stambp RAID00172455 mmu-miR-7056-5p miRNA MIMAT0028016 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00268260 mmu-miR-452-3p miRNA MIMAT0017194 Stambp mRNA 70527 CLIP-seq 0.5483 Stambp RAID00359956 mmu-miR-365-3p miRNA MIMAT0000711 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00406467 mmu-miR-384-5p miRNA MIMAT0004745 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00467096 mmu-miR-351-5p miRNA MIMAT0000609 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00471607 mmu-miR-294-3p miRNA MIMAT0000372 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00573585 mmu-miR-431-5p miRNA MIMAT0001418 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00585654 mmu-miR-143-3p miRNA MIMAT0000247 Stambp mRNA 70527 Prediction 0.2202 Stambp RAID00599934 mmu-miR-7069-5p miRNA MIMAT0028044 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00658558 mmu-miR-190a-5p miRNA MIMAT0000220 Stambp mRNA 70527 NGS (Next Generation Sequencing) 0.5483 Stambp RAID00659158 mmu-miR-6897-5p miRNA MIMAT0027694 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00661866 mmu-miR-433-3p miRNA MIMAT0001420 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00695298 mmu-miR-299a-3p miRNA MIMAT0004577 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00770997 mmu-miR-133b-3p miRNA MIMAT0000769 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00784259 mmu-miR-712-5p miRNA MIMAT0003502 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00854019 mmu-miR-290b-5p miRNA MIMAT0029900 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00864447 mmu-miR-134-5p miRNA MIMAT0000146 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00930281 mmu-miR-7024-5p miRNA MIMAT0027952 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00948601 mmu-miR-30c-5p miRNA MIMAT0000514 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00974558 mmu-miR-504-5p miRNA MIMAT0004889 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00990382 mmu-miR-125a-5p miRNA MIMAT0000135 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID00996798 mmu-miR-374b-5p miRNA MIMAT0003727 Stambp mRNA 70527 CLIP-seq//Prediction 0.6308 Stambp RAID01195147 mmu-miR-10a-5p miRNA MIMAT0000648 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01217226 mmu-miR-291a-3p miRNA MIMAT0000368 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01239439 mmu-miR-30b-5p miRNA MIMAT0000130 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01252851 mmu-miR-7119-5p miRNA MIMAT0028135 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01327314 mmu-miR-297a-5p miRNA MIMAT0000375 Stambp mRNA 70527 NGS (Next Generation Sequencing) 0.5483 Stambp RAID01474335 mmu-miR-135a-5p miRNA MIMAT0000147 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01478642 mmu-miR-15a-5p miRNA MIMAT0000526 Stambp mRNA 70527 CLIP-seq 0.5483 Stambp RAID01585679 mmu-miR-30a-5p miRNA MIMAT0000128 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01593464 mmu-miR-877-5p miRNA MIMAT0004861 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01633631 mmu-miR-328-5p miRNA MIMAT0017030 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01764221 mmu-miR-1982-5p miRNA MIMAT0009459 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01808930 mmu-miR-135b-5p miRNA MIMAT0000612 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID01972355 mmu-miR-29b-3p miRNA MIMAT0000127 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02013981 mmu-miR-107-3p miRNA MIMAT0000647 Stambp mRNA 70527 CLIP-seq 0.5483 Stambp RAID02075974 mmu-miR-302a-3p miRNA MIMAT0000380 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02079716 mmu-miR-23a-3p miRNA MIMAT0000532 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02160241 mmu-miR-10b-5p miRNA MIMAT0000208 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02190293 mmu-miR-1188-5p miRNA MIMAT0005843 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02272657 mmu-miR-322-5p miRNA MIMAT0000548 Stambp mRNA 70527 CLIP-seq 0.5483 Stambp RAID02359390 mmu-miR-324-5p miRNA MIMAT0000555 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02414479 mmu-miR-295-3p miRNA MIMAT0000373 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02429763 mmu-miR-7023-5p miRNA MIMAT0027950 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02532792 mmu-miR-6390 miRNA MIMAT0025139 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02581591 mmu-miR-466q miRNA MIMAT0020631 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02663391 mmu-miR-205-5p miRNA MIMAT0000238 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02665166 mmu-miR-335-5p miRNA MIMAT0000766 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02706710 mmu-miR-7073-5p miRNA MIMAT0028052 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02758534 mmu-miR-1897-5p miRNA MIMAT0007864 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02789411 mmu-miR-199a-5p miRNA MIMAT0000229 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02796040 mmu-miR-302b-3p miRNA MIMAT0003374 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02830232 mmu-miR-30d-5p miRNA MIMAT0000515 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID02935407 mmu-miR-125b-5p miRNA MIMAT0000136 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID03084637 mmu-miR-23b-3p miRNA MIMAT0000125 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID03102353 mmu-miR-139-5p miRNA MIMAT0000656 Stambp mRNA 70527 Prediction 0.2202 Stambp RAID03180821 mmu-miR-30e-5p miRNA MIMAT0000248 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID03260424 mmu-miR-302d-3p miRNA MIMAT0003377 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID03564055 mmu-miR-155-5p miRNA MIMAT0000165 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID03730062 mmu-miR-212-3p miRNA MIMAT0000659 Stambp mRNA 70527 CLIP-seq//Prediction 0.6308 Stambp RAID03740669 mmu-miR-124-3p miRNA MIMAT0000134 Stambp mRNA 70527 Microarray 0.5483 Stambp RAID03774343 mmu-miR-669c-3p miRNA MIMAT0017253 Stambp mRNA 70527 Prediction 0.1828 Stambp RAID03828874 mmu-miR-6941-5p miRNA MIMAT0027782 Stambp mRNA 70527 Prediction 0.1828