DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004531 mmu-miR-135a* 22190 Ubc gcggugccgagguuAGGGAUAu ||||||| aggugucuuaguuuUCCCUAUc 2 9 7 28 [mm9:5:125866399-125866420:-] 0.4713 140 7 -14.26 -0.4669 MIMAT0004531 mmu-miR-135a* 22190 Ubc gcggugccgagguuAGGGAUAu ||||||| aggugucuuaguuuUCCCUAUc 2 9 7 28 [mm9:5:125866399-125866420:-] 0.4713 140 7 -14.26 -0.1611 MIMAT0000367 mmu-miR-291a-5p 22190 Ubc ucucucccgGAGGUGAAACUac :| |||||||| caaguuucaUUGCACUUUGAau 3 14 43 64 [mm9:5:125866363-125866384:-] 0.6777 133 0 -12.72 -0.1004 MIMAT0000378 mmu-miR-300 22190 Ubc cuucucucgaaCGGGAACGUAu |::||||||| cuuugaauaaaGUUCUUGCAUu 2 12 57 78 [mm9:5:125866349-125866370:-] 0.6777 147 7 -13.74 -1.1512 MIMAT0000378 mmu-miR-300 22190 Ubc cuucucucgaaCGGGAACGUAu |::||||||| cuuugaauaaaGUUCUUGCAUu 2 12 57 78 [mm9:5:125866349-125866370:-] 0.6777 147 7 -13.74 -1.0251 MIMAT0004628 mmu-miR-21* 22190 Ubc cugucggguagcugaCGACAAc |||||| uucccuaucuuuuaaGCUGUUa 2 8 20 41 [mm9:5:125866386-125866407:-] 0.3844 120 6 -13.82 -0.1078 MIMAT0003189 mmu-miR-291b-5p 22190 Ubc ccucucccgGAGGUGAAACUag :| |||||||| caaguuucaUUGCACUUUGAau 3 14 43 64 [mm9:5:125866363-125866384:-] 0.6777 133 0 -12.72 -0.1004 MIMAT0003190 mmu-miR-291b-3p 22190 Ubc uguUUGUUUUACCU-ACGUGAAa |||||: | | ||||||| guuAACAAGUUUCAUUGCACUUu 2 20 38 60 [mm9:5:125866367-125866389:-] 0.4957 158 7 -14.64 -0.9108 MIMAT0003190 mmu-miR-291b-3p 22190 Ubc uguUUGUUUUACCU-ACGUGAAa |||||: | | ||||||| guuAACAAGUUUCAUUGCACUUu 2 20 38 60 [mm9:5:125866367-125866389:-] 0.4957 158 7 -14.64 -0.8757 MIMAT0003734 mmu-miR-667 22190 Ubc gaacccgACCCACCGUCCACAGu |||| || ||||||| -------UGGG-GG-AGGUGUCu 2 17 1 14 [mm9:5:125866413-125866426:-] 0.4713 152 7 -21.93 -0.4932 MIMAT0003734 mmu-miR-667 22190 Ubc gaacccgACCCACCGUCCACAGu |||| || ||||||| -------UGGG-GG-AGGUGUCu 2 17 1 14 [mm9:5:125866413-125866426:-] 0.4713 152 7 -21.93 -0.2027 MIMAT0005448 mmu-miR-467b 22190 Ubc guauauguacgucCGUGAAug |||||| aacaaguuucauuGCACUUug 3 9 41 61 [mm9:5:125866366-125866386:-] 0.5831 120 0 -7.78 -0.1413 MIMAT0005448 mmu-miR-467b 22190 Ubc guauauguacgucCGUGAAug |||||| aacaaguuucauuGCACUUug 3 9 41 61 [mm9:5:125866366-125866386:-] 0.5831 120 0 -7.78 -0.1180 MIMAT0004856 mmu-miR-105 22190 Ubc uggUGUUCGUAGACUCGUGAAcc |||||: || |||||| uuaACAAGUUUCAUUGCACUUug 3 21 39 61 [mm9:5:125866366-125866388:-] 0.5831 144 0 -17.08 -0.1427 MIMAT0004856 mmu-miR-105 22190 Ubc uggUGUUCGUAGACUCGUGAAcc |||||: || |||||| uuaACAAGUUUCAUUGCACUUug 3 21 39 61 [mm9:5:125866366-125866388:-] 0.5831 144 0 -17.08 -0.1192 MIMAT0000123 mmu-miR-1 22190 Ubc uaUGUAUGAAGAAAUGUAAGGu |:| | ||| ||:|||||| gaAUAAAGUUC-UUGCAUUCCa 2 21 61 81 [mm9:5:125866346-125866366:-] 0.7579 150 6 -16.60 -0.8821 MIMAT0000123 mmu-miR-1 22190 Ubc uaUGUAUGAAGAAAUGUAAGGu |:| | ||| ||:|||||| gaAUAAAGUUC-UUGCAUUCC- 2 21 61 80 [mm9:5:125866347-125866366:-] 0.7579 150 6 -13.52 -0.4130 MIMAT0000141 mmu-miR-130a 22190 Ubc uacgggaAAAUUGUAACGUGAc ||| ||||||||| uaacaagUUU--CAUUGCACUu 2 16 40 59 [mm9:5:125866368-125866387:-] 0.4957 152 7 -12.48 -0.8763 MIMAT0000141 mmu-miR-130a 22190 Ubc uacgggaAAAUUGUAACGUGAc ||| ||||||||| uaacaagUUU--CAUUGCACUu 2 16 40 59 [mm9:5:125866368-125866387:-] 0.4957 152 7 -12.48 -0.8447 MIMAT0000158 mmu-miR-146a 22190 Ubc uuGGGUACCUUAAGUCAAGAGu | | | |||| ||||||: ugCACUUUGAAUAAAGUUCUUg 2 21 53 74 [mm9:5:125866353-125866374:-] 0.6777 144 0 -11.69 -0.1434 MIMAT0000239 mmu-miR-206 22190 Ubc ggUGUGUGAAGGAAUGUAAGGu |:| | || |||:|||||| gaAUAAAGUU-CUUGCAUUCCa 2 21 61 81 [mm9:5:125866346-125866366:-] 0.7579 150 6 -19.85 -0.8821 MIMAT0000239 mmu-miR-206 22190 Ubc ggUGUGUGAAGGAAUGUAAGGu |:| | || |||:|||||| gaAUAAAGUU-CUUGCAUUCC- 2 21 61 80 [mm9:5:125866347-125866366:-] 0.7579 150 6 -16.77 -0.4130 MIMAT0000379 mmu-miR-301a 22190 Ubc cgaAACUGUU-AUGAUAACGUGAc || |||| | : |||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 36 59 [mm9:5:125866368-125866391:-] 0.4957 163 7 -12.08 -0.8763 MIMAT0000379 mmu-miR-301a 22190 Ubc cgaAACUGUU-AUGAUAACGUGAc || |||| | : |||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 36 59 [mm9:5:125866368-125866391:-] 0.4957 163 7 -12.08 -0.8447 MIMAT0000385 mmu-miR-106a 22190 Ubc gaUGGACGUGACAAUCGUGAAAc || |: :| | ||||||| uaACAAGU-UUCAUUGCACUUUg 2 22 40 61 [mm9:5:125866366-125866387:-] 0.5831 143 7 -13.65 -1.1064 MIMAT0000385 mmu-miR-106a 22190 Ubc gaUGGACGUGACAAUCGUGAAAc || |: :| | ||||||| uaACAAGU-UUCAUUGCACUUUg 2 22 40 61 [mm9:5:125866366-125866387:-] 0.5831 143 7 -13.65 -1.0614 MIMAT0000386 mmu-miR-106b 22190 Ubc uagacgUGACAGU--CGUGAAAu | | ||| ||||||| uuaacaAGUUUCAUUGCACUUUg 2 16 39 61 [mm9:5:125866366-125866388:-] 0.5831 146 7 -11.92 -1.1064 MIMAT0000386 mmu-miR-106b 22190 Ubc uagacgUGACAGU--CGUGAAAu | | ||| ||||||| uuaacaAGUUUCAUUGCACUUUg 2 16 39 61 [mm9:5:125866366-125866388:-] 0.5831 146 7 -11.92 -1.0614 MIMAT0000387 mmu-miR-130b 22190 Ubc uacgggaaaguAGUAACGUGAc |||||||||| guuaacaaguuUCAUUGCACUu 2 12 38 59 [mm9:5:125866368-125866389:-] 0.4957 155 7 -13.62 -0.8694 MIMAT0000387 mmu-miR-130b 22190 Ubc uacgggaaaguAGUAACGUGAc |||||||||| guuaacaaguuUCAUUGCACUu 2 12 38 59 [mm9:5:125866368-125866389:-] 0.4957 155 7 -13.62 -0.8377 MIMAT0000529 mmu-miR-20a 22190 Ubc gaUGGACGUGAUAUUCGUGAAAu || |: : || ||||||| uaACAAGUUUCAU-UGCACUUUg 2 22 40 61 [mm9:5:125866366-125866387:-] 0.5831 143 7 -11.15 -1.1064 MIMAT0000529 mmu-miR-20a 22190 Ubc gaUGGACGUGAUAUUCGUGAAAu || |: : || ||||||| uaACAAGUUUCAU-UGCACUUUg 2 22 40 61 [mm9:5:125866366-125866387:-] 0.5831 143 7 -11.15 -1.0614 MIMAT0000540 mmu-miR-93 22190 Ubc gauggacgugcuUGUCGUGAAAc |: ||||||| uuaacaaguuucAUUGCACUUUg 2 12 39 61 [mm9:5:125866366-125866388:-] 0.5831 143 7 -13.26 -1.1064 MIMAT0000540 mmu-miR-93 22190 Ubc gauggacgugcuUGUCGUGAAAc |: ||||||| uuaacaaguuucAUUGCACUUUg 2 12 39 61 [mm9:5:125866366-125866388:-] 0.5831 143 7 -13.26 -1.0614 MIMAT0000649 mmu-miR-17 22190 Ubc gauggacgugacauuCGUGAAAc ||||||| uuaacaaguuucauuGCACUUUg 2 9 39 61 [mm9:5:125866366-125866388:-] 0.5831 140 7 -13.40 -1.1064 MIMAT0000649 mmu-miR-17 22190 Ubc gauggacgugacauuCGUGAAAc ||||||| uuaacaaguuucauuGCACUUUg 2 9 39 61 [mm9:5:125866366-125866388:-] 0.5831 140 7 -13.40 -1.0614 MIMAT0003187 mmu-miR-20b 22190 Ubc gaUGGACGUGAUACUCGUGAAAc || |: : || ||||||| uaACAAGUUUCAU-UGCACUUUg 2 22 40 61 [mm9:5:125866366-125866387:-] 0.5831 143 7 -13.26 -1.1064 MIMAT0003187 mmu-miR-20b 22190 Ubc gaUGGACGUGAUACUCGUGAAAc || |: : || ||||||| uaACAAGUUUCAU-UGCACUUUg 2 22 40 61 [mm9:5:125866366-125866387:-] 0.5831 143 7 -13.26 -1.0614 MIMAT0004186 mmu-miR-301b 22190 Ubc cgaAACUGUU-AUGGUAACGUGAc || |||| | :||||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 36 59 [mm9:5:125866368-125866391:-] 0.4957 171 7 -18.00 -0.8763 MIMAT0004186 mmu-miR-301b 22190 Ubc cgaAACUGUU-AUGGUAACGUGAc || |||| | :||||||||| cugUUAACAAGUUUCAUUGCACUu 2 21 36 59 [mm9:5:125866368-125866391:-] 0.4957 171 7 -18.00 -0.8447 MIMAT0003475 mmu-miR-146b 22190 Ubc ucgGAUACCUUAAGUCAAGAGu || | |||| ||||||: gcaCU-UUGAAUAAAGUUCUUg 2 20 54 74 [mm9:5:125866353-125866373:-] 0.6777 141 0 -12.29 -0.1434 MIMAT0003515 mmu-miR-721 22190 Ubc aagggggaAAAUUAACGUGAc ||| |||||||| uuaacaagUUUCAUUGCACUu 2 14 39 59 [mm9:5:125866368-125866388:-] 0.4957 157 7 -10.85 -0.8831 MIMAT0003515 mmu-miR-721 22190 Ubc aagggggaAAAUUAACGUGAc ||| |||||||| uuaacaagUUUCAUUGCACUu 2 14 39 59 [mm9:5:125866368-125866388:-] 0.4957 157 7 -10.85 -0.8518

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056978 Ubc Mus musculus 22190

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubc RAID00106663 mmu-miR-291b-3p miRNA MIMAT0003190 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID00156600 mmu-miR-301b-3p miRNA MIMAT0004186 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID00202717 mmu-miR-294-3p miRNA MIMAT0000372 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID00206974 mmu-miR-93-5p miRNA MIMAT0000540 Ubc mRNA 22190 CLIP-seq//Prediction 0.6478 Ubc RAID00228962 mmu-miR-106a-5p miRNA MIMAT0000385 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID00281268 mmu-miR-301a-3p miRNA MIMAT0000379 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID00798222 mmu-miR-290a-3p miRNA MIMAT0004572 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID00894005 mmu-miR-17-5p miRNA MIMAT0000649 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID01030106 mmu-miR-130b-3p miRNA MIMAT0000387 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID01211684 mmu-miR-130a-3p miRNA MIMAT0000141 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID01365393 mmu-miR-1a-3p miRNA MIMAT0000123 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID01367796 mmu-miR-206-3p miRNA MIMAT0000239 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID01825269 mmu-miR-295-3p miRNA MIMAT0000373 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID01868733 mmu-miR-106b-5p miRNA MIMAT0000386 Ubc mRNA 22190 CLIP-seq//Prediction 0.6478 Ubc RAID02064109 mmu-miR-20a-5p miRNA MIMAT0000529 Ubc mRNA 22190 CLIP-seq//Prediction 0.6478 Ubc RAID02089106 mmu-miR-146b-5p miRNA MIMAT0003475 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID02099399 mmu-miR-292a-3p miRNA MIMAT0000370 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID03494499 mmu-miR-6399 miRNA MIMAT0025151 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID03523602 mmu-miR-721 miRNA MIMAT0003515 Ubc mRNA 22190 CLIP-seq//Prediction 0.6478 Ubc RAID03729959 mmu-miR-350-5p miRNA MIMAT0017040 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID03742455 mmu-miR-146a-5p miRNA MIMAT0000158 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308 Ubc RAID03856132 mmu-miR-6389 miRNA MIMAT0025137 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID03856424 mmu-miR-135a-1-3p miRNA MIMAT0004531 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID03925425 mmu-miR-291a-3p miRNA MIMAT0000368 Ubc mRNA 22190 Prediction 0.1828 Ubc RAID03982645 mmu-miR-20b-5p miRNA MIMAT0003187 Ubc mRNA 22190 CLIP-seq//Prediction 0.6308