DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004579 mmu-miR-302a* 66610 Abi3 cgUUCAUGUUGGUGCAAAUUCa ||| :||| | ||||||| agAAG-GCAAGGA-GUUUAAGc 2 21 233 252 [mm9:11:95693775-95693794:-] 0.5435 152 7 -11.70 -0.2128 MIMAT0003739 mmu-miR-673-5p 66610 Abi3 gagguuccuGGUCUCGACACUc |: |:||||||| ugucuaccuCUUGGGCUGUGAa 2 14 99 120 [mm9:11:95693907-95693928:-] 0.5458 149 7 -17.21 -0.4573 MIMAT0003455 mmu-miR-679 66610 Abi3 ugGUUC-UCAGUGGA--GUGUCAGg ||:| || || || ||||||| ccCAGGAAGCCAGCUUCCACAGUCa 2 21 57 81 [mm9:11:95693946-95693970:-] 0.5507 158 7 -24.06 -0.3172 MIMAT0003457 mmu-miR-680 66610 Abi3 ggGGGUAC-AGUCGUCUA-CGGg |:|||| |||| |||| ||| agCUCAUGCUCAGAAGAUCGCCa 2 20 273 295 [mm9:11:95693732-95693754:-] 0.5668 138 0 -24.34 -0.7013 MIMAT0003461 mmu-miR-683 66610 Abi3 cucCUGUGUCGA---AUGUCGUCc | | | ||| |||||||| ucaGUCCCUGCUCCAUACAGCAGu 2 19 127 150 [mm9:11:95693877-95693900:-] 0.5409 149 7 -13.99 -0.2369 MIMAT0004189 mmu-miR-693-3p 66610 Abi3 aaugucGGUGUAGACUUUCGACg ||||| | ||||||| cagcuuCCACA-GUCAAAGCUGg 2 18 67 88 [mm9:11:95693939-95693960:-] 0.5507 155 7 -17.84 -0.1270 MIMAT0003492 mmu-miR-702 66610 Abi3 cucgcCCCAUUUCCCACCCGu ||| |:||||||||| gcaguGGGAAGAGGGUGGGCu 2 17 146 166 [mm9:11:95693861-95693881:-] 0.5409 168 7 -32.75 -0.1971 MIMAT0003499 mmu-miR-709 66610 Abi3 aggaGGACGGAGACGGAGg |||| | ||||||| caacCCUG-CACUGCCUCg 2 16 24 41 [mm9:11:95693986-95694003:-] 0.4905 153 7 -23.78 -0.1143 MIMAT0004837 mmu-miR-615-5p 66610 Abi3 cuaGGCUCGUGGCCCCUGGGGg || || | | ||||||| gcaCCUUGCCCAGAGGACCCCc 2 20 251 272 [mm9:11:95693755-95693776:-] 0.5435 155 7 -29.00 -0.3493 MIMAT0004856 mmu-miR-105 66610 Abi3 uggUGUUCGU-AGACUCGU-GAACc :|||| | |:| |||| |||| aagGCAAGGAGUUUAAGCACCUUGc 2 21 235 259 [mm9:11:95693768-95693792:-] 0.5435 131 0 -15.78 -0.2073 MIMAT0007872 mmu-miR-1906 66610 Abi3 ucgggacgGAGUCC-----GACGACGu |||||| ||||||| gggugguaCUCAGGGGGGACUGCUGCa 2 15 173 199 [mm9:11:95693828-95693854:-] 0.5409 145 7 -24.31 -0.6099 MIMAT0007873 mmu-miR-1896 66610 Abi3 gaGGAGU-GGGUGGUAGUC-UCUc || || |:||: |||| ||| acCCCCAGCUCAUGCUCAGAAGAu 2 21 267 290 [mm9:11:95693737-95693760:-] 0.5435 123 0 -17.32 -0.1710 MIMAT0009425 mmu-miR-1954 66610 Abi3 uuGUCCCAGAGUGA-GACGUCa ||||| ||| |||||| cuCAGGG-GGGACUGCUGCAGa 2 20 181 201 [mm9:11:95693826-95693846:-] 0.5409 121 6 -23.08 -0.4513 MIMAT0009434 mmu-miR-1961 66610 Abi3 aagaUUGAU-GAUGGAGu | ||: ||||||| aaggACCUGUCUACCUCu 2 14 92 109 [mm9:11:95693918-95693935:-] 0.5507 144 7 -12.98 -0.4131 MIMAT0009434 mmu-miR-1961 66610 Abi3 aagaUUGAUGA-UGGAGu ||||:|| ||||| auaaAACUGCUGACCUCc 2 14 303 320 [mm9:11:95693707-95693724:-] 0.5900 125 0 -15.40 -0.3337 MIMAT0009437 mmu-miR-1964 66610 Abi3 uuUCGGCCUCGGGUCUUC-AGCc |||: ||:|||||| ||| ccAGCUCAUGCUCAGAAGAUCGc 2 21 271 293 [mm9:11:95693734-95693756:-] 0.5668 132 0 -22.01 -0.3476 MIMAT0009445 mmu-miR-1274a 66610 Abi3 accgcgGACUUG-UCCCUGGACu |||:|| | ||||||| ucaaagCUGGACUAAGGACCUGu 2 17 79 101 [mm9:11:95693926-95693948:-] 0.5507 159 7 -23.50 -0.5219 MIMAT0009456 mmu-miR-1839-5p 66610 Abi3 guucuggacaaGAUAGAUGGAa ||:||||||| ggacuaaggacCUGUCUACCUc 2 12 87 108 [mm9:11:95693919-95693940:-] 0.5507 151 7 -21.46 -0.2119 MIMAT0011216 mmu-miR-2140 66610 Abi3 uggUGGUUCUAGACGUGGa |:| | ||||||| aggAUCUAUCCCUGCACCa 2 17 7 25 [mm9:11:95694002-95694020:-] 0.5248 144 7 -15.09 -0.3037 MIMAT0011221 mmu-miR-2145 66610 Abi3 uuGGUCCGGGCUGGGACGa || | || ||||||| ucCCUGCACCAACCCUGCa 2 18 15 33 [mm9:11:95693994-95694012:-] 0.5248 153 7 -22.76 -0.2421 MIMAT0011221 mmu-miR-2145 66610 Abi3 uuGGUCCGGGCU-GGGACGa ||||| :| | |||||| gcCCAGGAUCUAUCCCUGCa 2 18 3 22 [mm9:11:95694005-95694024:-] 0.5248 129 6 -23.64 -0.1473 MIMAT0015641 mmu-miR-3470b 66610 Abi3 ggucGGACCAG--AUGUC-UCACu |||| || ||||| |||| agucCCUGCUCCAUACAGCAGUGg 2 18 129 152 [mm9:11:95693875-95693898:-] 0.5409 128 0 -19.17 -0.1932 MIMAT0000121 mmu-let-7g 66610 Abi3 uuGACAUGUUU----GAU-GAUGGAGu ||| || || ||: ||||||| agCUGGACUAAGGACCUGUCUACCUCu 2 21 83 109 [mm9:11:95693918-95693944:-] 0.5507 150 7 -18.48 -0.4131 MIMAT0000121 mmu-let-7g 66610 Abi3 uuGACAUG-UUUGAUGA-UGGAGu :|| |: |||||:|| ||||| cuUUGAAUAAAACUGCUGACCUCc 2 21 297 320 [mm9:11:95693707-95693730:-] 0.5900 135 0 -17.63 -0.3283 MIMAT0000122 mmu-let-7i 66610 Abi3 uugucgUGUUUGAU-GAUGGAGu | :| ||: ||||||| ggacuaAGGACCUGUCUACCUCu 2 17 87 109 [mm9:11:95693918-95693940:-] 0.5507 147 7 -15.24 -0.4131 MIMAT0000122 mmu-let-7i 66610 Abi3 uugucgugUUUGAUGA-UGGAGu |||||:|| ||||| uuugaauaAAACUGCUGACCUCc 2 15 298 320 [mm9:11:95693707-95693729:-] 0.5900 130 0 -16.33 -0.3310 MIMAT0000135 mmu-miR-125a-5p 66610 Abi3 agUGUCCAAUUUC------CCA-GAGUCCCu :::|| ||:|| ||| ||||||| ggGUGGGCUAGAGAGGGGUGGUACUCAGGGg 2 23 158 188 [mm9:11:95693839-95693869:-] 0.5409 148 7 -27.22 -0.1599 MIMAT0000136 mmu-miR-125b-5p 66610 Abi3 agugUUCAAUCCCA-GAGUCCCu :|| : ||| ||||||| uagaGAGGGGUGGUACUCAGGGg 2 19 166 188 [mm9:11:95693839-95693861:-] 0.5409 149 7 -23.14 -0.1553 MIMAT0004576 mmu-miR-296-3p 66610 Abi3 ccucucGGAGGUGGGUUGGGAg ||| || |||||||| ucuaucCCUGCA-CCAACCCUg 2 17 11 31 [mm9:11:95693996-95694016:-] 0.5248 158 7 -22.21 -0.1071 MIMAT0000381 mmu-miR-34c 66610 Abi3 cguuaGUCGAU-UGAUGUGACGGa || | | ||:||||||| cccugCACCAACCCUGCACUGCCu 2 19 16 39 [mm9:11:95693988-95694011:-] 0.5248 153 7 -20.30 -0.1779 MIMAT0000382 mmu-miR-34b-5p 66610 Abi3 uguuagucgauuaAUGUGACGGa |:||||||| ccugcaccaacccUGCACUGCCu 2 11 17 39 [mm9:11:95693988-95694010:-] 0.5248 146 7 -16.21 -0.1779 MIMAT0000383 mmu-let-7d 66610 Abi3 uuGAUACGUUGGAU-GAUGGAGa ||| | :||||: ||||||| gaCUAAG-GACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 161 7 -24.54 -0.4100 MIMAT0000383 mmu-let-7d 66610 Abi3 uugauacgUUGGAUGA-UGGAGa || ||:|| ||||| uuugaauaAAACUGCUGACCUCc 2 15 298 320 [mm9:11:95693707-95693729:-] 0.5900 122 0 -13.93 -0.3310 MIMAT0000521 mmu-let-7a 66610 Abi3 uuGAUAUGUUGGAU-GAUGGAGu ||| | :||||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 161 7 -22.84 -0.4100 MIMAT0000521 mmu-let-7a 66610 Abi3 uugaUAUGUUGGAUGA-UGGAGu ||| || ||:|| ||||| uugaAUA-AAACUGCUGACCUCc 2 19 299 320 [mm9:11:95693707-95693728:-] 0.5900 128 0 -14.07 -0.3255 MIMAT0000522 mmu-let-7b 66610 Abi3 uuGGUGUGUUGGAU-GAUGGAGu |:| | :||||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 157 7 -22.16 -0.4100 MIMAT0000522 mmu-let-7b 66610 Abi3 uuggUGUGUUGGAUGA-UGGAGu |:| || ||:|| ||||| uugaAUA-AAACUGCUGACCUCc 2 19 299 320 [mm9:11:95693707-95693728:-] 0.5900 124 0 -13.82 -0.3283 MIMAT0000523 mmu-let-7c 66610 Abi3 uuGGUAUGUUGGAU-GAUGGAGu |:| | :||||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 157 7 -22.15 -0.4100 MIMAT0000523 mmu-let-7c 66610 Abi3 uuggUAUGUUGGAUGA-UGGAGu ||| || ||:|| ||||| uugaAUA-AAACUGCUGACCUCc 2 19 299 320 [mm9:11:95693707-95693728:-] 0.5900 128 0 -13.85 -0.3255 MIMAT0000524 mmu-let-7e 66610 Abi3 uuGAUAUGUUGGA-GGAUGGAGu ||| | :|||| :||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 161 7 -22.76 -0.4100 MIMAT0000524 mmu-let-7e 66610 Abi3 uugaUAUGUUGGAGGA-UGGAGu ||| || || || ||||| uugaAUA-AAACUGCUGACCUCc 2 19 299 320 [mm9:11:95693707-95693728:-] 0.5900 124 0 -14.11 -0.3255 MIMAT0000525 mmu-let-7f 66610 Abi3 uuGAUAUGUUAGAU-GAUGGAGu ||| | :| ||: ||||||| gaCUA-AGGACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 153 7 -15.97 -0.4131 MIMAT0000525 mmu-let-7f 66610 Abi3 uugaUAUGUUAGAUGA-UGGAGu ||| || ||:|| ||||| uugaAUA-AAACUGCUGACCUCc 2 19 299 320 [mm9:11:95693707-95693728:-] 0.5900 128 0 -13.49 -0.3283 MIMAT0000528 mmu-miR-18a 66610 Abi3 gauagaCGUGAUCUACGUGGAAu | | | | ||||||| aggcaaGGAGUUUAAGCACCUUg 2 18 236 258 [mm9:11:95693769-95693791:-] 0.5435 145 7 -16.37 -0.2951 MIMAT0000542 mmu-miR-34a 66610 Abi3 uguUGGUCGAUUCUGUGACGGu |||| | | ||||||| ugcACCAACCCUG-CACUGCCu 2 20 19 39 [mm9:11:95693988-95694008:-] 0.5248 149 7 -19.07 -0.1653 MIMAT0000545 mmu-miR-98 66610 Abi3 uuGUUAUGUUGAAUGAUGGAGu | | : | || ||||||| gaCUAAGGACCUGUCUACCUCu 2 21 88 109 [mm9:11:95693918-95693939:-] 0.5507 148 7 -12.57 -0.4100 MIMAT0000545 mmu-miR-98 66610 Abi3 uugUUAUGUUGAAUGA-UGGAGu |||| ||| |:|| ||||| uugAAUAAAAC-UGCUGACCUCc 2 20 299 320 [mm9:11:95693707-95693728:-] 0.5900 133 0 -13.69 -0.3255 MIMAT0000609 mmu-miR-351 66610 Abi3 guCCGA-GUUUCC---CGAGGAGUCCCu |||| |:||| | | ||||||| ugGGCUAGAGAGGGGUGGUACUCAGGGg 2 23 161 188 [mm9:11:95693839-95693866:-] 0.5409 156 7 -34.36 -0.1553 MIMAT0000666 mmu-miR-320 66610 Abi3 agcgggagaguugGGUCGAAAa |||||||| gcucagaagaucgCCAGCUUUg 2 10 280 301 [mm9:11:95693726-95693747:-] 0.5668 145 7 -16.52 -0.3070 MIMAT0000743 mmu-miR-379 66610 Abi3 ggAUGCAAGGUAUCAGAUGGu || | || | ||||||| acUAAGGACC-U-GUCUACCu 2 20 89 107 [mm9:11:95693920-95693938:-] 0.5507 143 7 -17.08 -0.4521 MIMAT0001542 mmu-miR-449a 66610 Abi3 ugGUCGAUUGUUAUGUGACGGu || | ||| |:||||||| ugCA-CCAACCCUGCACUGCCu 2 21 19 39 [mm9:11:95693988-95694008:-] 0.5248 158 7 -19.73 -0.1746 MIMAT0003460 mmu-miR-449c 66610 Abi3 ggucGAUCGUUACGUGACGGa | | | ||||||||| ugcaCCAACCCUGCACUGCCu 2 18 19 39 [mm9:11:95693988-95694008:-] 0.5248 153 7 -21.10 -0.1779 MIMAT0004858 mmu-miR-18b 66610 Abi3 gauugUCGUGAUCUACGUGGAAu || | | | ||||||| aggcaAGGAGUUUAAGCACCUUg 2 19 236 258 [mm9:11:95693769-95693791:-] 0.5435 150 7 -16.65 -0.2951 MIMAT0005447 mmu-miR-449b 66610 Abi3 cgGUCGAU-UGUUGUGACGGa || | | | :||||||| ugCACCAACCCUGCACUGCCu 2 19 19 39 [mm9:11:95693988-95694008:-] 0.5248 145 7 -18.54 -0.1779

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038697 Abi3 Mus musculus 66610

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Abi3 mmu-miR-2145 beg:14 end:33 pic:3' TTGGTCCG-GGCTGGGACGA 5'& || || || ||||||| &5' --CCT-GCACCAACCCTGC- 3' Abi3 mmu-miR-296-3p beg:14 end:31 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& ||| || |||||||| &5' ------CCTGCA-CCAACCCT- 3' Abi3 mmu-miR-449b beg:20 end:40 pic:3' CGGTCGATTGTTGTGACGGA 5'& ||| | .|||||||| &5' -CCAACCCT--GCACTGCCT 3' Abi3 mmu-miR-34a beg:21 end:39 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||||| || .||||||| &5' -CAACC--CT---GCACTGCC- 3' Abi3 mmu-miR-34c beg:26 end:40 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& ||.|||||||| &5' ------------CTGCACTGCCT 3' Abi3 mmu-miR-34b-5p beg:27 end:40 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& |.|||||||| &5' -------------TGCACTGCCT 3' Abi3 mmu-miR-145star beg:50 end:65 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||.| ||||||| &5' ---GAGCC------CCAGGAA- 3' Abi3 mmu-miR-326 beg:255 end:267 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||||||||| &5' ------------GCCCAGAGG 3' Abi3 mmu-let-7i beg:90 end:109 pic:3' TTGTCGTGTTTGAT-GATGGAGT 5'& || || ||. ||||||| &5' ---AGGAC---CTGTCTACCTC- 3' Abi3 mmu-let-7d beg:92 end:110 pic:3' TTGATACGTTGGAT-GATGGAGA 5'& .||||. |||||||| &5' --------GACCTGTCTACCTCT 3' Abi3 mmu-let-7f beg:95 end:109 pic:3' TTGATATGTTAGAT-GATGGAGT 5'& ||. ||||||| &5' -----------CTGTCTACCTC- 3' Abi3 mmu-miR-1961 beg:95 end:109 pic:3' AAGATTGAT-GATGGAGT 5'& ||. ||||||| &5' ------CTGTCTACCTC- 3' Abi3 mmu-miR-2140 beg:18 end:36 pic:3' TGGTGGTTCTAGACGTGGA 5'& |||||| ||||||. &5' --CACCAACC-CTGCACT- 3' Abi3 mmu-miR-709 beg:25 end:41 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||| ||||||| &5' ----CCTGCA-CTGCCTC- 3' Abi3 mmu-miR-1274a beg:82 end:101 pic:3' ACCGCGGACTTGTC-CCTGGACT 5'& |||.|| ||||||| &5' ------CTGGACTAAGGACCTG- 3' Abi3 mmu-miR-702 beg:38 end:48 pic:3' CTCGCCCCATTTCCCACCCGT 5'& ||||||| &5' -------------GGTGGGC- 3' Abi3 mcmv-miR-M23-2 beg:252 end:274 pic:3' GGCGAACTGG-CTCC-GGGGGTA 5'& | |||| || |||| |||||| &5' -C-CTTGCCCAGAGGACCCCCA- 3' Abi3 mcmv-miR-m59-1 beg:183 end:197 pic:3' GACTGCCAGCTCCGTGACGATT 5'& |.|| ||||||. &5' ---------GGGGGACTGCTG- 3' Abi3 mcmv-miR-m59-1 beg:296 end:316 pic:3' GACTGCCAGCTCCG--TGACGATT 5'& |.|| ||||||.| &5' -------TTGAATAAAACTGCTGA 3' Abi3 mmu-let-7a beg:21 end:41 pic:3' TTGATATGTTGGA---TGATGGAGT 5'& ||||| |||.|||| &5' -------CAACCCTGCACTGCCTC- 3' Abi3 mmu-let-7a beg:87 end:109 pic:3' TTGATATGTTGGAT-GATGGAGT 5'& .|||| | .||||. ||||||| &5' GACTA-AGGACCTGTCTACCTC- 3' Abi3 mmu-let-7b beg:87 end:109 pic:3' TTGGTGTGTTGGAT-GATGGAGT 5'& .||.| | .||||. ||||||| &5' GACTA-AGGACCTGTCTACCTC- 3' Abi3 mmu-let-7b beg:21 end:41 pic:3' TTGGTGTGTTGGA---TGATGGAGT 5'& || ||||| |||.|||| &5' ----AC-CAACCCTGCACTGCCTC- 3' Abi3 mmu-let-7c beg:21 end:41 pic:3' TTGGTATGTTGGA---TGATGGAGT 5'& ||||| |||.|||| &5' -------CAACCCTGCACTGCCTC- 3' Abi3 mmu-let-7c beg:85 end:109 pic:3' TTGGTATGTTGGAT-GATGGAGT 5'& .||.| | .||||. ||||||| &5' GACTA-AGGACCTGTCTACCTC- 3' Abi3 mmu-let-7d beg:21 end:41 pic:3' TTGATACGTTGGA---TGATGGAGA 5'& ||||| |||.|||| &5' -------CAACCCTGCACTGCCTC- 3' Abi3 mmu-let-7e beg:90 end:109 pic:3' TTGATATGTTGGA-GGATGGAGT 5'& | .|||| .||||||| &5' ------AGGACCTGTCTACCTC- 3' Abi3 mmu-let-7g beg:90 end:109 pic:3' TTGACATGTTTGAT-GATGGAGT 5'& | .| ||. ||||||| &5' ------AGGACCTGTCTACCTC- 3' Abi3 mmu-let-7g beg:23 end:41 pic:3' TTGACATGTT-TGATGATGGAGT 5'& || .| |||.|||| &5' ------ACCCTGC-ACTGCCTC- 3' Abi3 mmu-let-7i beg:23 end:41 pic:3' TTGTCGTGTT-TGATGATGGAGT 5'& || .| |||.|||| &5' ------ACCCTGC-ACTGCCTC- 3' Abi3 mmu-miR-1190 beg:181 end:205 pic:3' CTGTCTCCCCT--TGGAGTCGACT 5'& |||.||||| .|. ||| ||. &5' --CAGGGGGGACTGCTGCAGATGG 3' Abi3 mmu-miR-125a-5p beg:167 end:189 pic:3' AGTGTCCAATTTCCCA----GAGTCCCT 5'& .|.|||| |||||||. &5' ---------GAGGGGTGGTACTCAGGGG 3' Abi3 mmu-miR-125b-5p beg:167 end:189 pic:3' AGTGTTCAATCCCA-GAGTCCCT 5'& .|| . ||| |||||||. &5' ----GAGGGGTGGTACTCAGGGG 3' Abi3 mmu-miR-138 beg:279 end:299 pic:3' GCCGGACTAAGTGTT---GTGGTCGA 5'& ||| || |.|||||| &5' ---------TCAGAAGATCGCCAGCT 3' Abi3 mmu-miR-145 beg:69 end:91 pic:3' TCCCTAAGGA--CCCTTTTGACCTG 5'& |||| | |||.|||||| &5' -----TTCCACAGTCAAAGCTGGAC 3' Abi3 mmu-miR-148a beg:27 end:37 pic:3' TGTTTCAAGACATCACGTGACT 5'& ||||||| &5' --------------TGCACTG- 3' Abi3 mmu-miR-148b beg:27 end:37 pic:3' TGTTTCAAGACACTACGTGACT 5'& ||||||| &5' --------------TGCACTG- 3' Abi3 mmu-miR-152 beg:15 end:37 pic:3' GGTTCAAGACAGT-------ACGTGACT 5'& ||| || ||||||| &5' -------CTG-CACCAACCCTGCACTG- 3' Abi3 mmu-miR-1839-5p beg:90 end:108 pic:3' GTTCTGGACAAGATAGATGGAA 5'& |.|||||| ||||||| &5' -AGGACCTG-----TCTACCT- 3' Abi3 mmu-miR-188-3p beg:133 end:155 pic:3' ACGTTTGGGA---CGTACACCCTC 5'& || || ||| |||||| &5' -GCT--CCATACAGCA-GTGGGA- 3' Abi3 mmu-miR-18a beg:235 end:259 pic:3' GATAGACGTGA-TCTA---CGTGGAAT 5'& ||| || |||||||. &5' ------GCAAGGAGTTTAAGCACCTTG 3' Abi3 mmu-miR-18astar beg:166 end:191 pic:3' GTCTTCC--TCGTGAATCCCGTCA 5'& |||.|| .|.||| |||| .| &5' -AGAGGGGTGGTACTCAGGGGGG- 3' Abi3 mmu-miR-1902 beg:242 end:258 pic:3' TTCAGTACGGATGACGTGGAGA 5'& |..|| ||||||. &5' -------GTTTAA-GCACCTT- 3' Abi3 mmu-miR-193star beg:249 end:271 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& || ||||||| .|.||||| &5' -CACCTTGCCCA-GAGGACCC- 3' Abi3 mmu-miR-193star beg:81 end:100 pic:3' AGTAGAACGGGC-G-TTTCTGGGT 5'& ||. | | ||.||||. &5' -------GCTGGACTAAGGACCT- 3' Abi3 mmu-miR-1961 beg:26 end:41 pic:3' AAGATTGATGATGGAGT 5'& || .| |||.|||| &5' --CT-GC-ACTGCCTC- 3' Abi3 mmu-miR-1962 beg:278 end:301 pic:3' TACACAGGGTCA-----CGGTCGGAGA 5'& || |.||| ||||||.|. &5' ---TG-CTCAGAAGATCGCCAGCTTT- 3' Abi3 mmu-miR-1962 beg:52 end:74 pic:3' TACACAGGGTCA--CGGTCGGAGA 5'& | ||||| ||||||.|| &5' ----GCCCCAGGAAGCCAGCTTC- 3' Abi3 mmu-miR-196a beg:24 end:40 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ||| .| |||.||| &5' CCCTGC--------ACTGCCT- 3' Abi3 mmu-miR-196b beg:13 end:40 pic:3' GGGTTGTTGTCCTT---TGATGGAT 5'& ||| .|| || |||.||| &5' CCCTGCACCAACCCTGCACTGCCT- 3' Abi3 mmu-miR-19astar beg:291 end:312 pic:3' CATCAC-GTTGATAC--GTTTTGAT 5'& | ||.|| || .||||||. &5' -----GCCAGCTTTGAATAAAACTG 3' Abi3 mmu-miR-2145 beg:117 end:138 pic:3' TTGGTCCGGG-CTGGGACGA 5'& |||.. |..| | ||||||| &5' AACTGTGTTCAGTCCCTGCT 3' Abi3 mmu-miR-27a beg:105 end:120 pic:3' CGCCTTGAATCGGTGACACTT 5'& |||.| .||||||| &5' ------CTTGG--GCTGTGAA 3' Abi3 mmu-miR-29bstar beg:50 end:71 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& .|.|| ||| |||.||||| &5' -GAGCC-CCAG--GAAGCCAGC 3' Abi3 mmu-miR-330 beg:242 end:267 pic:3' CGGATTCTGTGTC-CGGGTCTCT 5'& |..|||| ||| ||||||||. &5' GTTTAAG-CACCTTGCCCAGAGG 3' Abi3 mmu-miR-375 beg:288 end:308 pic:3' AGTGCGCTCGGCTTGCTTGTTT 5'& ||| |||. .|||.||| &5' ---CGCCAGCTT--TGAATAAA 3' Abi3 mmu-miR-376astar beg:4 end:17 pic:3' TGAGTATCTTCCTCTTAGATGG 5'& ||.|||||.| &5' ------------AGGATCTATC 3' Abi3 mmu-miR-379 beg:87 end:107 pic:3' GGATGCAAGGTATCAGATGGT 5'& ||| | || ||||||| &5' -CTAAGGACCT--GTCTACC- 3' Abi3 mmu-miR-449a beg:14 end:39 pic:3' TGGTCGA--TTGTTATGTGACGGT 5'& || || ||| |.||||||| &5' -CCTGCACCAACCCTGCACTGCC- 3' Abi3 mmu-miR-449c beg:17 end:40 pic:3' GGTCGATCGTT---ACGTGACGGA 5'& || ||| |||||||||| &5' ---GCAC-CAACCCTGCACTGCCT 3' Abi3 mmu-miR-483star beg:155 end:179 pic:3' TTCTGCCCTCCC-----CTCCTCACT 5'& ||| ||| ||||.|||. &5' -----GGGTGGGCTAGAGAGGGGTGG 3' Abi3 mmu-miR-485 beg:279 end:301 pic:3' CTTAAGTAG--TGCCGGTCGGAGA 5'& ||| |. ||||||.|. &5' ----TCAGAAGATCGCCAGCTTT- 3' Abi3 mmu-miR-485 beg:56 end:74 pic:3' CTTAAGTAGTGC--CGGTCGGAGA 5'& || | ||||||.|| &5' --------CAGGAAGCCAGCTTC- 3' Abi3 mmu-miR-496 beg:165 end:185 pic:3' CTCTAACCGGTACATTATGAGT 5'& |||| || ||..|||||| &5' GAGA--GGG---GTGGTACTCA 3' Abi3 mmu-miR-615-3p beg:165 end:192 pic:3' TTCTCCC--TC-TGGGTCCGAGCCT 5'& .|||||| .| ||.|||| ||| &5' GAGAGGGGTGGTACTCAGGGG-GGA 3' Abi3 mmu-miR-615-5p beg:251 end:273 pic:3' CTAGGCTCGTGGCC-CCTGGGGG 5'& || || || | |||||||| &5' ---CCTTGC-CCAGAGGACCCCC 3' Abi3 mmu-miR-670 beg:176 end:189 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .||||||||. &5' -----------TACTCAGGGG- 3' Abi3 mmu-miR-673-5p beg:98 end:120 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& ||.| |. |.||||||| &5' -TCTACCT-CTTGGGCTGTGA- 3' Abi3 mmu-miR-674star beg:108 end:119 pic:3' AACAAGACTCTACCCTCGACAC 5'& |.|||||| &5' --------------GGGCTGTG 3' Abi3 mmu-miR-693-3p beg:66 end:88 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& .| ||||| ||||||| &5' --GCTTCCACAGTC-AAAGCTG- 3' Abi3 mmu-miR-696 beg:53 end:71 pic:3' GGGTGTCGTTCGTGTGCG 5'& ||| ||| |||| || || &5' CCC-CAGGAAGC-CA-GC 3' Abi3 mmu-miR-702 beg:145 end:166 pic:3' CTCGCCCCATTTCCCACCCGT 5'& ||.||| |.||||||||| &5' -AGTGGGA-AGAGGGTGGGC- 3' Abi3 mmu-miR-762 beg:253 end:278 pic:3' CGAGACAGGG---CC--GGGGTCGGGG 5'& ||. ||| || |||||||.| &5' -CTTG--CCCAGAGGACCCCCAGCTC- 3' Abi3 mmu-miR-770-3p beg:63 end:89 pic:3' GGTCG-AGGTG-CAGTC-CGGGTGC 5'& ||||| ||||| |||| ||. . &5' CCAGCTTCCACAGTCAAAGCTGG-- 3' Abi3 mmu-miR-98 beg:21 end:41 pic:3' TTGTTATGTTGAA---TGATGGAGT 5'& |||| |||.|||| &5' -------CAACCCTGCACTGCCTC- 3' Abi3 mmu-miR-98 beg:90 end:109 pic:3' TTGTTATGTTGAAT-GATGGAGT 5'& | .|| |. ||||||| &5' ------AGGACCTGTCTACCTC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Abi3 RAID00033360 mmu-miR-882 miRNA MIMAT0004847 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00071532 mmu-miR-615-5p miRNA MIMAT0004837 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00071622 mmu-miR-19b-3p miRNA MIMAT0000513 Abi3 mRNA 66610 Prediction 0.2202 Abi3 RAID00156727 mmu-let-7a-5p miRNA MIMAT0000521 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID00283347 mmu-miR-125a-5p miRNA MIMAT0000135 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00372065 mmu-let-7g-5p miRNA MIMAT0000121 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID00437297 mmu-miR-6909-5p miRNA MIMAT0027718 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00586078 mmu-miR-449b miRNA MIMAT0005447 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00654083 mmu-miR-673-5p miRNA MIMAT0003739 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00673825 mmu-miR-532-3p miRNA MIMAT0004781 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00720535 mmu-miR-320-3p miRNA MIMAT0000666 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00829282 mmu-miR-674-3p miRNA MIMAT0003741 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID00973360 mmu-miR-501-3p miRNA MIMAT0003509 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01047540 mmu-miR-5621-5p miRNA MIMAT0022369 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01117473 mmu-miR-34c-5p miRNA MIMAT0000381 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01163541 mmu-miR-296-3p miRNA MIMAT0004576 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01257032 mmu-miR-5129-3p miRNA MIMAT0022987 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01269261 mmu-let-7b-5p miRNA MIMAT0000522 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID01325528 mmu-miR-34b-5p miRNA MIMAT0000382 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01326036 mmu-miR-34a-5p miRNA MIMAT0000542 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01384561 mmu-miR-125b-5p miRNA MIMAT0000136 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01525877 mmu-miR-449a-5p miRNA MIMAT0001542 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01660704 mmu-miR-7002-5p miRNA MIMAT0027906 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01690573 mmu-miR-6985-3p miRNA MIMAT0027873 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01744556 mmu-let-7d-5p miRNA MIMAT0000383 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID01780469 mmu-miR-1906 miRNA MIMAT0007872 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01790160 mmu-miR-1894-3p miRNA MIMAT0007878 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID01888202 mmu-let-7e-5p miRNA MIMAT0000524 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID02368759 mmu-let-7c-5p miRNA MIMAT0000523 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID02372696 mmu-miR-7647-3p miRNA MIMAT0029797 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID02425294 mmu-miR-874-3p miRNA MIMAT0004853 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID02429017 mmu-miR-18b-5p miRNA MIMAT0004858 Abi3 mRNA 66610 Prediction 0.2202 Abi3 RAID02517888 mmu-miR-7048-5p miRNA MIMAT0028000 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID02776125 mmu-miR-3097-3p miRNA MIMAT0014916 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID02782839 mmu-miR-449c-5p miRNA MIMAT0003460 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID02885529 mmu-miR-665-3p miRNA MIMAT0003733 Abi3 mRNA 66610 Prediction 0.2202 Abi3 RAID02996766 mmu-let-7f-5p miRNA MIMAT0000525 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID03108418 mmu-miR-6929-3p miRNA MIMAT0027759 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03131499 mmu-miR-665-5p miRNA MIMAT0017238 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03263648 mmu-miR-339-5p miRNA MIMAT0000584 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03270115 mmu-miR-379-5p miRNA MIMAT0000743 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID03395879 mmu-miR-18a-5p miRNA MIMAT0000528 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03589367 mmu-miR-1961 miRNA MIMAT0009434 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID03762479 mmu-miR-98-5p miRNA MIMAT0000545 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308 Abi3 RAID03812568 mmu-miR-185-3p miRNA MIMAT0016996 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03817324 mmu-miR-19a-3p miRNA MIMAT0000651 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03842743 mmu-miR-292b-3p miRNA MIMAT0029865 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03860300 mmu-miR-344f-3p miRNA MIMAT0014932 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03865996 mmu-miR-683 miRNA MIMAT0003461 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03877997 mmu-miR-7074-5p miRNA MIMAT0028054 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03940760 mmu-miR-351-5p miRNA MIMAT0000609 Abi3 mRNA 66610 Prediction 0.1828 Abi3 RAID03948175 mmu-let-7i-5p miRNA MIMAT0000122 Abi3 mRNA 66610 CLIP-seq//Prediction 0.6308