DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Chd3 ATTTA 1-2121 2903-2907;3571-3575;5256-5260

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT013668 mmu-miR-190a-5p Mus musculus Chd3 216848 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT599419 mmu-miR-204-5p Mus musculus Chd3 216848 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT012148 mmu-let-7b-5p Mus musculus Chd3 216848 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT011706 mmu-miR-15a-5p Mus musculus Chd3 216848 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT599418 mmu-miR-211-5p Mus musculus Chd3 216848 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT009313 mmu-miR-7b-5p Mus musculus Chd3 216848 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 216848 Chd3 cguUCCGUCACCGGACAUGUca |||: | | :|||||| aucAGGUUAUCGGUUGUACAua 3 20 919 940 [mm9:11:69156794-69156815:-] 0.6666 135 0 -13.42 -0.2781 MIMAT0004519 mmu-let-7g* 216848 Chd3 cguUCCGUCACCGGACAUGUca |||: | | :|||||| aucAGGUUAUCGGUUGUACAua 3 20 1038 1059 [mm9:11:69156794-69156815:-] 0.6666 135 0 -13.42 -0.2612 MIMAT0000152 mmu-miR-140* 216848 Chd3 ggcaCCAAGAUGGGACAC-CAu |||| :|||||| || gcucGGUUACCUCCUGUGUGUc 2 18 453 474 [mm9:11:69157260-69157281:-] 0.6318 121 0 -17.74 -0.2716 MIMAT0000152 mmu-miR-140* 216848 Chd3 ggcaCCAAGAUGGGACAC-CAu |||| :|||||| || gcucGGUUACCUCCUGUGUGUc 2 18 572 593 [mm9:11:69157260-69157281:-] 0.6318 121 0 -17.74 -0.2547 MIMAT0004572 mmu-miR-290-3p 216848 Chd3 cccgaaUUUUGAUCCGCCGUGAAa ::::||: :||||||| ggggggGGGGCUGCAUGGCACUUu 2 19 360 383 [mm9:11:69157351-69157374:-] 0.6165 150 7 -25.25 -0.3512 MIMAT0004572 mmu-miR-290-3p 216848 Chd3 cccgaaUUUUGAUCCGCCGUGAAa ::::||: :||||||| ggggggGGGGCUGCAUGGCACUUu 2 19 479 502 [mm9:11:69157351-69157374:-] 0.6165 150 7 -25.25 -0.3289 MIMAT0000370 mmu-miR-292-3p 216848 Chd3 ugugagUUUUGGAC-CGCCGUGAAa :::: ||| :||||||| agggggGGGGGCUGCAUGGCACUUu 2 19 359 383 [mm9:11:69157351-69157375:-] 0.6165 145 7 -19.07 -0.3541 MIMAT0000370 mmu-miR-292-3p 216848 Chd3 ugugagUUUUGGAC-CGCCGUGAAa :::: ||| :||||||| agggggGGGGGCUGCAUGGCACUUu 2 19 478 502 [mm9:11:69157351-69157375:-] 0.6165 145 7 -19.07 -0.3317 MIMAT0004575 mmu-miR-295* 216848 Chd3 cuucacacggGGUGUAAACUCa |:| ||||||| uggauacagaCUAAAUUUGAGu 2 13 690 711 [mm9:11:69157023-69157044:-] 0.5508 148 7 -11.26 -0.4744 MIMAT0004575 mmu-miR-295* 216848 Chd3 cuucacacggGGUGUAAACUCa |:| ||||||| uggauacagaCUAAAUUUGAGu 2 13 809 830 [mm9:11:69157023-69157044:-] 0.5508 148 7 -11.26 -0.4506 MIMAT0000375 mmu-miR-297a 216848 Chd3 uguacguguacGUGUGUAUGUa :::|||||:| agguuaucgguUGUACAUAUAa 2 12 922 943 [mm9:11:69156791-69156812:-] 0.6666 127 0 -12.87 -0.1033 MIMAT0004578 mmu-miR-300* 216848 Chd3 ugUUUCCUAUUGGA--GAGAAGUu ::| || | ||| ||||||| ggGGACGAAAUCCUCCCUCUUCAa 2 21 662 685 [mm9:11:69157049-69157072:-] 0.5508 155 7 -17.49 -0.3898 MIMAT0004578 mmu-miR-300* 216848 Chd3 ugUUUCCUAUUGGA--GAGAAGUu ::| || | ||| ||||||| ggGGACGAAAUCCUCCCUCUUCAa 2 21 781 804 [mm9:11:69157049-69157072:-] 0.5508 155 7 -17.49 -0.3684 MIMAT0004616 mmu-miR-30c-1* 216848 Chd3 ccucauUUGUUGGGAGAGGGUc |:: ::|||||||| uuucccAGUCUUUCUCUCCCAc 2 17 868 889 [mm9:11:69156845-69156866:-] 0.6666 148 7 -17.14 -0.4056 MIMAT0004616 mmu-miR-30c-1* 216848 Chd3 ccucauUUGUUGGGAGAGGGUc |:: ::|||||||| uuucccAGUCUUUCUCUCCCAc 2 17 987 1008 [mm9:11:69156845-69156866:-] 0.6666 148 7 -17.14 -0.3837 MIMAT0005438 mmu-miR-30c-2* 216848 Chd3 ucucauuuGUCGGA---AGAGGGUc |||:|| ||||||| gccuuuccCAGUCUUUCUCUCCCAc 2 15 865 889 [mm9:11:69156845-69156869:-] 0.6666 149 7 -18.78 -0.4056 MIMAT0005438 mmu-miR-30c-2* 216848 Chd3 ucucauuuGUCGGA---AGAGGGUc |||:|| ||||||| gccuuuccCAGUCUUUCUCUCCCAc 2 15 984 1008 [mm9:11:69156845-69156869:-] 0.6666 149 7 -18.78 -0.3837 MIMAT0004622 mmu-let-7c-1* 216848 Chd3 ccuUUCGAUCUUCCAACAUGUc |:|:|| ||||||||| aucAGGUUA-UCGGUUGUACAu 2 20 919 939 [mm9:11:69156795-69156815:-] 0.6666 157 7 -16.19 -0.7267 MIMAT0004622 mmu-let-7c-1* 216848 Chd3 ccuUUCGAUCUUCCAACAUGUc |:|:|| ||||||||| aucAGGUUA-UCGGUUGUACAu 2 20 1038 1058 [mm9:11:69156795-69156815:-] 0.6666 157 7 -16.19 -0.7000 MIMAT0004624 mmu-miR-15a* 216848 Chd3 acUCCGUCGUGUCAUACCG-GAc :|| :| :| | ||||| || ggGGGGGGGGCUGCAUGGCACUu 2 21 360 382 [mm9:11:69157352-69157374:-] 0.6165 120 0 -20.49 -0.2641 MIMAT0004624 mmu-miR-15a* 216848 Chd3 acUCCGUCGUGUCAUACCG-GAc :|| :| :| | ||||| || ggGGGGGGGGCUGCAUGGCACUu 2 21 479 501 [mm9:11:69157352-69157374:-] 0.6165 120 0 -20.49 -0.2460 MIMAT0004628 mmu-miR-21* 216848 Chd3 cugUCGGGUAGCUGACGACAAc ||| : :||:||||||| gagAGCGAGCUGAUUGCUGUUc 2 20 427 448 [mm9:11:69157286-69157307:-] 0.6318 159 7 -21.18 -0.3224 MIMAT0004628 mmu-miR-21* 216848 Chd3 cugUCGGGUAGCUGACGACAAc ||| : :||:||||||| gagAGCGAGCUGAUUGCUGUUc 2 20 546 567 [mm9:11:69157286-69157307:-] 0.6318 159 7 -21.18 -0.3023 MIMAT0004635 mmu-miR-92a* 216848 Chd3 caUUACGGUGGUUA-GGGGUGGa |:| || : :|| ||||||| caAGUACC-UGGAUGCCCCACCa 2 21 139 160 [mm9:11:69157574-69157595:-] 0.6261 149 7 -20.08 -0.6532 MIMAT0004635 mmu-miR-92a* 216848 Chd3 cauuacGGUGGUUAGGGGUGGa ||||| |||||||| aacccuCCACC-UUCCCCACCc 2 17 78 98 [mm9:11:69157755-69157775:-] 0.6076 158 7 -27.99 -0.5060 MIMAT0004635 mmu-miR-92a* 216848 Chd3 caUUACGGUGGUUA-GGGGUGGa |:| || : :|| ||||||| caAGUACC-UGGAUGCCCCACCa 2 21 258 279 [mm9:11:69157574-69157595:-] 0.6261 149 7 -20.08 -0.6235 MIMAT0000578 mmu-miR-337-3p 216848 Chd3 ucCGUAGUAUAUC-CUCGACUu |:: | | || ||||||| aaGUGAGAGAGAGCGAGCUGAu 2 20 419 440 [mm9:11:69157294-69157315:-] 0.6031 146 7 -12.58 -0.1846 MIMAT0000578 mmu-miR-337-3p 216848 Chd3 ucCGUAGUAUAUC-CUCGACUu |:: | | || ||||||| aaGUGAGAGAGAGCGAGCUGAu 2 20 538 559 [mm9:11:69157294-69157315:-] 0.6031 146 7 -12.58 -0.1715 MIMAT0000742 mmu-miR-378* 216848 Chd3 ugugUCCUGGACCUCAGUCCUc :|||||| |||||||| gccaGGGACCU--AGUCAGGAg 2 19 719 738 [mm9:11:69156996-69157015:-] 0.5508 163 7 -30.19 -0.1149 MIMAT0000742 mmu-miR-378* 216848 Chd3 ugugUCCUGGACCUCAGUCCUc :|||||| |||||||| gccaGGGACCU--AGUCAGGAg 2 19 838 857 [mm9:11:69156996-69157015:-] 0.5508 163 7 -30.19 -0.1069 MIMAT0004704 mmu-miR-335-3p 216848 Chd3 ccaguccucGUUAUUACUUUUu ||| :||||||| accuuguuaCAAAGAUGAAAAu 2 14 319 340 [mm9:11:69157394-69157415:-] 0.6165 153 7 -8.32 -0.3993 MIMAT0004704 mmu-miR-335-3p 216848 Chd3 ccaguccucGUUAUUACUUUUu ||| :||||||| accuuguuaCAAAGAUGAAAAu 2 14 438 459 [mm9:11:69157394-69157415:-] 0.6165 153 7 -8.32 -0.3751 MIMAT0003409 mmu-miR-467a 216848 Chd3 gcguauauguACGU-CCGUGAAu |||| ||||||| gggggggggcUGCAUGGCACUUu 2 13 361 383 [mm9:11:69157351-69157373:-] 0.6165 151 7 -17.67 -0.3428 MIMAT0003409 mmu-miR-467a 216848 Chd3 gcguauauguACGU-CCGUGAAu |||| ||||||| gggggggggcUGCAUGGCACUUu 2 13 480 502 [mm9:11:69157351-69157373:-] 0.6165 151 7 -17.67 -0.3208 MIMAT0004781 mmu-miR-532-3p 216848 Chd3 acgUUCGGAACCCACACCCUCc |:|:|| | ||||||| aagAGGUCUAG---GUGGGAGa 2 20 103 121 [mm9:11:69157613-69157631:-] 0.6055 147 7 -18.75 -0.8199 MIMAT0004781 mmu-miR-532-3p 216848 Chd3 acgUUCGGAACCCACACCCUCc |:|:|| | ||||||| aagAGGUCUAG---GUGGGAGa 2 20 222 240 [mm9:11:69157613-69157631:-] 0.6055 147 7 -18.75 -0.7910 MIMAT0004782 mmu-miR-483 216848 Chd3 gaGGGAA--GAGAAGAGGG-CAGAa :|||| | | |:|||| |||| ccUCCUUGCCGCCUUUCCCAGUCUu 2 21 855 879 [mm9:11:69156855-69156879:-] 0.6666 127 0 -24.85 -0.4806 MIMAT0004782 mmu-miR-483 216848 Chd3 gaGGGAA--GAGAAGAGGG-CAGAa :|||| | | |:|||| |||| ccUCCUUGCCGCCUUUCCCAGUCUu 2 21 974 998 [mm9:11:69156855-69156879:-] 0.6666 127 0 -24.85 -0.4565 MIMAT0003120 mmu-miR-483* 216848 Chd3 uucuGCCCUCCCCUCCU-CACu ||||| ||||||| ||| ugucCGGGA-GGGAGGAGGUGg 2 18 191 211 [mm9:11:69157523-69157543:-] 0.6261 135 0 -31.14 -0.1563 MIMAT0003120 mmu-miR-483* 216848 Chd3 uucuGCCCUCCCCUCCU-CACu ||||| ||||||| ||| ugucCGGGA-GGGAGGAGGUGg 2 18 310 330 [mm9:11:69157523-69157543:-] 0.6261 135 0 -31.14 -0.1447 MIMAT0003127 mmu-miR-484 216848 Chd3 uagcccuccccugaCUCGGACu ||||||| agggaccuagucagGAGCCUGu 2 9 722 743 [mm9:11:69156991-69157012:-] 0.5508 140 7 -21.04 -0.1046 MIMAT0003170 mmu-miR-541 216848 Chd3 ucacACUGGUUGUAGUCUUAGGGAa ||::| ::|| ||||||| cuccUGGUC--UGUCCCAAUCCCUu 2 22 889 911 [mm9:11:69156823-69156845:-] 0.6666 150 7 -17.43 -0.5037 MIMAT0003170 mmu-miR-541 216848 Chd3 ucacACUGGUUGUAGUCUUAGGGAa ||::| ::|| ||||||| cuccUGGUC--UGUCCCAAUCCCUu 2 22 1008 1030 [mm9:11:69156823-69156845:-] 0.6666 150 7 -17.43 -0.4791 MIMAT0003733 mmu-miR-665 216848 Chd3 ucccuGGAGUCGGAGGACCa :||| ||||||| cuuucUCUCCCACUCCUGGu 2 16 877 896 [mm9:11:69156838-69156857:-] 0.6666 147 7 -20.28 -0.5110 MIMAT0003733 mmu-miR-665 216848 Chd3 ucccuGGAGUCGGAGGACCa :||| ||||||| cuuucUCUCCCACUCCUGGu 2 16 996 1015 [mm9:11:69156838-69156857:-] 0.6666 147 7 -20.28 -0.4863 MIMAT0003895 mmu-miR-764-3p 216848 Chd3 ugucAAC--GGUGAUA--CCGGAGGa ||| || |||| |||||| ccuuUUGCCCCUCUAUAAUGCCUCCc 2 19 5 30 [mm9:11:69157704-69157729:-] 0.6424 124 6 -19.99 -0.1168 MIMAT0003896 mmu-miR-763 216848 Chd3 cggugaCCAAGAAGGGUC-GACc || || ||||| ||| caaagaGGAGCUCCCCAGCCUGu 2 17 559 581 [mm9:11:69157153-69157175:-] 0.5999 120 0 -17.76 -0.1200 MIMAT0003896 mmu-miR-763 216848 Chd3 cggugaCCAAGAAGGGUC-GACc || || ||||| ||| caaagaGGAGCUCCCCAGCCUGu 2 17 678 700 [mm9:11:69157153-69157175:-] 0.5999 120 0 -17.76 -0.1118 MIMAT0004825 mmu-miR-423-5p 216848 Chd3 uuucagagcGAGAGACGGGGAGu | :|:|||||||| -----gagcCCUUUUGCCCCUCu 2 15 1 18 [mm9:11:69157716-69157733:-] 0.6424 154 7 -21.39 -1.0258 MIMAT0004825 mmu-miR-423-5p 216848 Chd3 uuUCAGAGCGAGAGACGGGGAGu || | || |:|||||||| cuAGGAGCCCU-UUUGCCCCUCu 2 22 116 137 [mm9:11:69157716-69157737:-] 0.6424 155 7 -22.60 -0.9900 MIMAT0003469 mmu-miR-690 216848 Chd3 aaaccaACACUCGGAUCGGAAa || |:| :||||||| ccaaagUGGGGGAUUAGCCUUg 2 17 253 274 [mm9:11:69157460-69157481:-] 0.6213 156 7 -17.99 -0.1574 MIMAT0003469 mmu-miR-690 216848 Chd3 aaaccaACACUCGGAUCGGAAa || |:| :||||||| ccaaagUGGGGGAUUAGCCUUg 2 17 372 393 [mm9:11:69157460-69157481:-] 0.6213 156 7 -17.99 -0.1457 MIMAT0003480 mmu-miR-297b-5p 216848 Chd3 uguacaAGUACGUGUGUAUGUa ||: :::|||||:| agguuaUCGGUUGUACAUAUAa 2 17 922 943 [mm9:11:69156791-69156812:-] 0.6666 132 0 -12.37 -0.1033 MIMAT0003481 mmu-miR-695 216848 Chd3 aagucAGUGGAUACGGGUUAGa | ::||:| ||||||| acuccUGGUCUGU-CCCAAUCc 2 18 888 908 [mm9:11:69156826-69156846:-] 0.6666 151 7 -16.83 -0.5547 MIMAT0003481 mmu-miR-695 216848 Chd3 aagucAGUGGAUACGGGUUAGa | ::||:| ||||||| acuccUGGUCUGU-CCCAAUCc 2 18 1007 1027 [mm9:11:69156826-69156846:-] 0.6666 151 7 -16.83 -0.5292 MIMAT0003485 mmu-miR-455* 216848 Chd3 gcUACAUC-AGGUUUCCGUGUAu | | || |:| :||||||| cuAGGGAGAUUC--GGGCACAUu 2 21 781 801 [mm9:11:69156933-69156953:-] 0.6426 144 7 -15.33 -0.1278 MIMAT0003485 mmu-miR-455* 216848 Chd3 gcUACAUC-AGGUUUCCGUGUAu | | || |:| :||||||| cuAGGGAGAUUC--GGGCACAUu 2 21 900 920 [mm9:11:69156933-69156953:-] 0.6426 144 7 -15.33 -0.1190 MIMAT0003495 mmu-miR-705 216848 Chd3 acGGGU--GGGGUGGAGGGUGg |||| |::: :||||||| uuCCCAGUCUUUCUCUCCCACu 2 19 869 890 [mm9:11:69156844-69156865:-] 0.6666 153 7 -27.56 -0.6718 MIMAT0003495 mmu-miR-705 216848 Chd3 acGGGU--GGGGUGGAGGGUGg |||| |::: :||||||| uuCCCAGUCUUUCUCUCCCACu 2 19 988 1009 [mm9:11:69156844-69156865:-] 0.6666 153 7 -27.56 -0.6452 MIMAT0003512 mmu-miR-450b-3p 216848 Chd3 uacGUACGUUUUACAAGGGUUa :|| || |: ||||||| aaaUAUACACAG-CUUCCCAAu 2 20 163 183 [mm9:11:69157551-69157571:-] 0.6261 149 7 -11.56 -0.6342 MIMAT0003512 mmu-miR-450b-3p 216848 Chd3 uacGUACGUUUUACAAGGGUUa :|| || |: ||||||| aaaUAUACACAG-CUUCCCAAu 2 20 282 302 [mm9:11:69157551-69157571:-] 0.6261 149 7 -11.56 -0.6046 MIMAT0004837 mmu-miR-615-5p 216848 Chd3 cuAGGCUCGUGGCCCCUGGGGg ||| || | ||||||| ccUCCCUUCA-AGAGGACCCCu 2 21 25 45 [mm9:11:69157689-69157709:-] 0.6339 146 7 -20.08 -0.8996 MIMAT0004837 mmu-miR-615-5p 216848 Chd3 cuAGGCUCGUGGCCCCUGGGGg ||| || | ||||||| ccUCCCUUCA-AGAGGACCCCu 2 21 144 164 [mm9:11:69157689-69157709:-] 0.6339 146 7 -20.08 -0.9129 MIMAT0004236 mmu-miR-741 216848 Chd3 agaugUAUCUUACCG-UAGAGAGu | ||:| | ||||||| cuucaAGAGGACCCCUAUCUCUCu 2 19 30 53 [mm9:11:69157681-69157704:-] 0.6339 145 7 -14.62 -0.2279 MIMAT0004236 mmu-miR-741 216848 Chd3 agaugUAUCUUACCG-UAGAGAGu | ||:| | ||||||| cuucaAGAGGACCCCUAUCUCUCu 2 19 149 172 [mm9:11:69157681-69157704:-] 0.6339 145 7 -14.62 -0.1993 MIMAT0004842 mmu-miR-879 216848 Chd3 ccgaaucucGAUAUU-CGGAGa |||||| ||||| uuugccccuCUAUAAUGCCUCc 2 13 8 29 [mm9:11:69157705-69157726:-] 0.6424 124 0 -14.58 -0.4250 MIMAT0004842 mmu-miR-879 216848 Chd3 ccgaaucucGAUAUU-CGGAGa |||||| ||||| uuugccccuCUAUAAUGCCUCc 2 13 127 148 [mm9:11:69157705-69157726:-] 0.6424 124 0 -14.58 -0.4868 MIMAT0004845 mmu-miR-881* 216848 Chd3 ucuacaCUGACAAUAGAGAGAc ||| ||||||||| caagagGACCCCUAUCUCUCUc 2 17 33 54 [mm9:11:69157680-69157701:-] 0.6339 156 7 -18.12 -0.3285 MIMAT0004845 mmu-miR-881* 216848 Chd3 ucuacaCUGACAAUAGAGAGAc ||| ||||||||| caagagGACCCCUAUCUCUCUc 2 17 152 173 [mm9:11:69157680-69157701:-] 0.6339 156 7 -18.12 -0.3030 MIMAT0004846 mmu-miR-881 216848 Chd3 agauaaGUCUUUUCUGUGUCAa | ||: | ||||||| gugggaCCGAGCA-ACACAGUg 2 17 751 771 [mm9:11:69156963-69156983:-] 0.5967 146 7 -10.61 -0.2171 MIMAT0004846 mmu-miR-881 216848 Chd3 agauaaGUCUUUUCUGUGUCAa | ||: | ||||||| gugggaCCGAGCA-ACACAGUg 2 17 870 890 [mm9:11:69156963-69156983:-] 0.5967 146 7 -10.61 -0.2032 MIMAT0004856 mmu-miR-105 216848 Chd3 ugGUGUUCGUAGACUCGU-GAACc | | |::| | |||| |||| acCUCCUGUGUGUCAGCAUCUUGc 2 22 461 484 [mm9:11:69157250-69157273:-] 0.6318 121 0 -13.95 -0.2779 MIMAT0004856 mmu-miR-105 216848 Chd3 ugGUGUUCGUAGACUCGU-GAACc | | |::| | |||| |||| acCUCCUGUGUGUCAGCAUCUUGc 2 22 580 603 [mm9:11:69157250-69157273:-] 0.6318 121 0 -13.95 -0.2610 MIMAT0004865 mmu-miR-297c 216848 Chd3 uguacAU-GUACGUGUGUAUGUa || |: :::|||||:| cagguUAUCGGUUGUACAUAUAa 2 18 921 943 [mm9:11:69156791-69156813:-] 0.6666 128 0 -12.08 -0.1033 MIMAT0004867 mmu-miR-327 216848 Chd3 uaggAGUACG-GGGAGUUCa | || | |||||||| ugggUGAUUCUCCCUCAAGc 2 16 539 558 [mm9:11:69157176-69157195:-] 0.5999 150 7 -16.67 -0.3647 MIMAT0004867 mmu-miR-327 216848 Chd3 uaggAGUACG-GGGAGUUCa | || | |||||||| ugggUGAUUCUCCCUCAAGc 2 16 658 677 [mm9:11:69157176-69157195:-] 0.5999 150 7 -16.67 -0.3443 MIMAT0004892 mmu-miR-568 216848 Chd3 cacACAUAUGUA---AAUAUGua |||| |:|| |||||| gguUGUACAUAUAAAUUAUACuu 3 18 930 952 [mm9:11:69156782-69156804:-] 0.6666 136 0 -9.19 -0.1085 MIMAT0004892 mmu-miR-568 216848 Chd3 cacACAUAUGUA---AAUAUGua |||| |:|| |||||| gguUGUACAUAUAAAUUAUACuu 3 18 1049 1071 [mm9:11:69156782-69156804:-] 0.6666 136 0 -9.19 -0.1010 MIMAT0004930 mmu-miR-466d-5p 216848 Chd3 guacauguacaugcGUGUGUGu ||||||| ucucucuccaccucCACACACc 2 9 47 68 [mm9:11:69157666-69157687:-] 0.6254 140 7 -11.78 -0.4414 MIMAT0004930 mmu-miR-466d-5p 216848 Chd3 guacauguacaugcGUGUGUGu ||||||| ucucucuccaccucCACACACc 2 9 166 187 [mm9:11:69157666-69157687:-] 0.6254 140 7 -11.78 -0.4156 MIMAT0004862 mmu-miR-877* 216848 Chd3 acccuccucccucUUCUCCUGu |||||||| aaugccucccuucAAGAGGACc 2 10 21 42 [mm9:11:69157692-69157713:-] 0.6339 145 7 -11.47 -0.4046 MIMAT0004862 mmu-miR-877* 216848 Chd3 acccuccucccucUUCUCCUGu |||||||| aaugccucccuucAAGAGGACc 2 10 140 161 [mm9:11:69157692-69157713:-] 0.6339 145 7 -11.47 -0.3637 MIMAT0005845 mmu-miR-466k 216848 Chd3 aguguACAUGUACAUGUGUGUGu | | || | ||||||| aucucUCUCCACCUCCACACACc 2 19 46 68 [mm9:11:69157666-69157688:-] 0.6254 150 7 -13.23 -0.4382 MIMAT0005845 mmu-miR-466k 216848 Chd3 aguguACAUGUACAUGUGUGUGu | | || | ||||||| aucucUCUCCACCUCCACACACc 2 19 165 187 [mm9:11:69157666-69157688:-] 0.6254 150 7 -13.23 -0.4124 MIMAT0005851 mmu-miR-1193 216848 Chd3 cuaucauuuugcCCACUGGAu |||||||| cagccuguucuaGGUGACCUa 2 10 574 594 [mm9:11:69157140-69157160:-] 0.5999 145 7 -16.75 -0.4603 MIMAT0005851 mmu-miR-1193 216848 Chd3 cuaucauuuugcCCACUGGAu |||||||| cagccuguucuaGGUGACCUa 2 10 693 713 [mm9:11:69157140-69157160:-] 0.5999 145 7 -16.75 -0.4368 MIMAT0007870 mmu-miR-1900 216848 Chd3 acUUCCUGGUCUCUCCCG--CCGg ::||| || ||||||| ||| ggGGGGAACACAGAGGGCCAGGCa 2 21 603 626 [mm9:11:69157108-69157131:-] 0.5754 124 0 -28.94 -0.2001 MIMAT0007870 mmu-miR-1900 216848 Chd3 acUUCCUGGUCUCUCCCG--CCGg ::||| || ||||||| ||| ggGGGGAACACAGAGGGCCAGGCa 2 21 722 745 [mm9:11:69157108-69157131:-] 0.5754 124 0 -28.94 -0.1872 MIMAT0007877 mmu-miR-1894-5p 216848 Chd3 ucuccGUCC-ACCAUCCCCU-CUc |||| | ||||||| || gggcuCAGGUUUCUAGGGGACGAa 2 18 647 670 [mm9:11:69157064-69157087:-] 0.5508 124 0 -21.88 -0.6153 MIMAT0007877 mmu-miR-1894-5p 216848 Chd3 ucuccGUCC-ACCAUCCCCU-CUc |||| | ||||||| || gggcuCAGGUUUCUAGGGGACGAa 2 18 766 789 [mm9:11:69157064-69157087:-] 0.5508 124 0 -21.88 -0.5890 MIMAT0009393 mmu-miR-1930 216848 Chd3 ugcgacguccaugaUACCUCCa ||||||| ccucccucuuccaaAUGGAGGg 2 9 385 406 [mm9:11:69157328-69157349:-] 0.5955 140 7 -11.82 -0.3677 MIMAT0009393 mmu-miR-1930 216848 Chd3 ugcgacguccaugaUACCUCCa ||||||| ccucccucuuccaaAUGGAGGg 2 9 504 525 [mm9:11:69157328-69157349:-] 0.5955 140 7 -11.82 -0.3447 MIMAT0009399 mmu-miR-1935 216848 Chd3 ucucuaGGCGGUCGGA-GACGGa || ||| ||| ||||| guaucaCCUCCA-CCUCCUGCCa 2 17 234 255 [mm9:11:69157479-69157500:-] 0.6261 122 0 -20.87 -0.4170 MIMAT0009399 mmu-miR-1935 216848 Chd3 ucucuaGGCGGUCGGA-GACGGa || ||| ||| ||||| guaucaCCUCCA-CCUCCUGCCa 2 17 353 374 [mm9:11:69157479-69157500:-] 0.6261 122 0 -20.87 -0.3921 MIMAT0009402 mmu-miR-1938 216848 Chd3 cuGGCUUGAUGUUCAGGGUGGc || || || ||||||| cuCCACAC-ACCUUUCCCACCa 2 21 58 78 [mm9:11:69157656-69157676:-] 0.6254 146 7 -16.78 -1.0726 MIMAT0009402 mmu-miR-1938 216848 Chd3 cuGGCUUGAUGUUCAGGGUGGc || || || ||||||| cuCCACAC-ACCUUUCCCACCa 2 21 177 197 [mm9:11:69157656-69157676:-] 0.6254 146 7 -16.78 -1.0556 MIMAT0009404 mmu-miR-1940 216848 Chd3 uugaCGAGGUGGAAGAGUCAGGA-GGUa |: :||||| | | |||| ||| uguaGUAUCACCUCCAC-CUCCUGCCAa 2 24 230 256 [mm9:11:69157478-69157504:-] 0.6261 125 0 -20.35 -0.4770 MIMAT0009404 mmu-miR-1940 216848 Chd3 uugaCGAGGUGGAAGAGUCAGGA-GGUa |: :||||| | | |||| ||| uguaGUAUCACCUCCAC-CUCCUGCCAa 2 24 349 375 [mm9:11:69157478-69157504:-] 0.6261 125 0 -20.35 -0.4502 MIMAT0009408 mmu-miR-1943 216848 Chd3 agGUCCACGGGUCUAGGAGGGAa :||| | | | ||||||||| ucUAGGGGACGAAAUCCUCCCUc 2 22 658 680 [mm9:11:69157054-69157076:-] 0.5508 169 7 -27.26 -0.6703 MIMAT0009408 mmu-miR-1943 216848 Chd3 agGUCCACGGGUCUAGGAGGGAa || | || | |||||||| ugCAUG-GCACUUUUCCUCCCUc 2 22 371 392 [mm9:11:69157342-69157363:-] 0.5955 151 7 -20.31 -0.3101 MIMAT0009408 mmu-miR-1943 216848 Chd3 agguccacgggucUA-GGAGGGAa || ||||||| uugccccucuauaAUGCCUCCCUu 2 11 9 32 [mm9:11:69157702-69157725:-] 0.6424 141 7 -21.32 -0.5689 MIMAT0009408 mmu-miR-1943 216848 Chd3 agGUCCACGGGUCUAGGAGGGAa :||| | | | ||||||||| ucUAGGGGACGAAAUCCUCCCUc 2 22 777 799 [mm9:11:69157054-69157076:-] 0.5508 169 7 -27.26 -0.6437 MIMAT0009408 mmu-miR-1943 216848 Chd3 agGUCCACGGGUCUAGGAGGGAa || | || | |||||||| ugCAUG-GCACUUUUCCUCCCUc 2 22 490 511 [mm9:11:69157342-69157363:-] 0.5955 151 7 -20.31 -0.2897 MIMAT0009408 mmu-miR-1943 216848 Chd3 agguccacgggucUA-GGAGGGAa || ||||||| uugccccucuauaAUGCCUCCCUu 2 11 128 151 [mm9:11:69157702-69157725:-] 0.6424 141 7 -21.32 -0.6598 MIMAT0009408 mmu-miR-1943 216848 Chd3 agGUCCACGGGUCUAGGA-GGGAa | || |||||: ||| |||| --CUGGAUCCCAGG-CCUGCCCUu 2 22 1 21 [mm9:11:69157832-69157852:-] 0.6023 127 0 -25.12 -0.2041 MIMAT0009412 mmu-miR-1946a 216848 Chd3 uuUUCACACAC-GGUGGUGACGGGCCGa ||||| | | ::| | :|||||||| caAAGUGGGGGAUUAGCCUUGCCCGGCc 2 26 254 281 [mm9:11:69157453-69157480:-] 0.6213 172 7 -30.71 -0.6644 MIMAT0009412 mmu-miR-1946a 216848 Chd3 uuUUCACACAC-GGUGGUGACGGGCCGa ||||| | | ::| | :|||||||| caAAGUGGGGGAUUAGCCUUGCCCGGCc 2 26 373 400 [mm9:11:69157453-69157480:-] 0.6213 172 7 -30.71 -0.6346 MIMAT0009414 mmu-miR-1937b 216848 Chd3 accccCGAGCAGGCCCUa | |:|||||||| uaaauGAUUGUCCGGGAg 2 14 183 200 [mm9:11:69157534-69157551:-] 0.6261 153 7 -19.63 -0.2944 MIMAT0009414 mmu-miR-1937b 216848 Chd3 accccCGAGCAGGCCCUa | |:|||||||| uaaauGAUUGUCCGGGAg 2 14 302 319 [mm9:11:69157534-69157551:-] 0.6261 153 7 -19.63 -0.2747 MIMAT0009423 mmu-miR-1952 216848 Chd3 guCUUCCUC--CCACCUCu ||:|||| ||||||| ggGAGGGAGGAGGUGGAGc 2 16 196 214 [mm9:11:69157520-69157538:-] 0.6261 158 7 -25.31 -0.1254 MIMAT0009423 mmu-miR-1952 216848 Chd3 guCUUCCUC--CCACCUCu ||:|||| ||||||| ggGAGGGAGGAGGUGGAGc 2 16 315 333 [mm9:11:69157520-69157538:-] 0.6261 158 7 -25.31 -0.1158 MIMAT0009424 mmu-miR-1953 216848 Chd3 gucuucGGACUCUUGAAAGGGu || | | ||||||| ccaccuCCACACACCUUUCCCa 2 17 54 75 [mm9:11:69157659-69157680:-] 0.6254 148 7 -15.22 -0.6864 MIMAT0009424 mmu-miR-1953 216848 Chd3 gucuucGGACUCUUGAAAGGGu |:|| : ||||||| auccucCUUGCCGCCUUUCCCa 2 17 853 874 [mm9:11:69156860-69156881:-] 0.6666 148 7 -16.33 -0.5221 MIMAT0009424 mmu-miR-1953 216848 Chd3 gucuucggacucuUGAAAGGGu |||||||: acauauaaauuauACUUUCCUu 2 10 936 957 [mm9:11:69156777-69156798:-] 0.6666 129 0 -12.46 -0.1048 MIMAT0009424 mmu-miR-1953 216848 Chd3 gucuucGGACUCUUGAAAGGGu || | | ||||||| ccaccuCCACACACCUUUCCCa 2 17 173 194 [mm9:11:69157659-69157680:-] 0.6254 148 7 -15.22 -0.6602 MIMAT0009424 mmu-miR-1953 216848 Chd3 gucuucGGACUCUUGAAAGGGu |:|| : ||||||| auccucCUUGCCGCCUUUCCCa 2 17 972 993 [mm9:11:69156860-69156881:-] 0.6666 148 7 -16.33 -0.4971 MIMAT0009429 mmu-miR-1937c 216848 Chd3 accccCGAGAAGGCCCUa | |: ||||||| uaaauGAUUGUCCGGGAg 2 14 183 200 [mm9:11:69157534-69157551:-] 0.6261 145 7 -13.86 -0.2944 MIMAT0009429 mmu-miR-1937c 216848 Chd3 accccCGAGAAGGCCCUa | |: ||||||| uaaauGAUUGUCCGGGAg 2 14 302 319 [mm9:11:69157534-69157551:-] 0.6261 145 7 -13.86 -0.2747 MIMAT0009431 mmu-miR-1958 216848 Chd3 ugaAUGACGAAGGUGAAAGGAu ||: || :|||||||| acaUAUAAAUUAUACUUUCCUu 2 20 936 957 [mm9:11:69156777-69156798:-] 0.6666 155 7 -12.55 -1.2252 MIMAT0009431 mmu-miR-1958 216848 Chd3 ugaAUGACGAAGGUGAAAGGAu ||: || :|||||||| acaUAUAAAUUAUACUUUCCUu 2 20 1055 1076 [mm9:11:69156777-69156798:-] 0.6666 155 7 -12.55 -1.2149 MIMAT0009443 mmu-miR-1946b 216848 Chd3 uuUUCGUACAC-GGUGGUGACGGGCCg |||:: | | ::| | :||||||| caAAGUGGGGGAUUAGCCUUGCCCGGc 2 25 254 280 [mm9:11:69157454-69157480:-] 0.6213 159 7 -27.60 -0.4054 MIMAT0009443 mmu-miR-1946b 216848 Chd3 uuUUCGUACAC-GGUGGUGACGGGCCg |||:: | | ::| | :||||||| caAAGUGGGGGAUUAGCCUUGCCCGGc 2 25 373 399 [mm9:11:69157454-69157480:-] 0.6213 159 7 -27.60 -0.3810 MIMAT0009446 mmu-miR-1971 216848 Chd3 agaguCGGGUCGGAAAUg ||||:||||||| gccuuGCCCGGCCUUUAg 2 14 269 286 [mm9:11:69157448-69157465:-] 0.6213 161 7 -24.06 -0.1005 MIMAT0009457 mmu-miR-1839-3p 216848 Chd3 cgacaaccaucuAUUCAUCCAGa |:|||||||| acagacuaaauuUGAGUAGGUCa 2 12 695 717 [mm9:11:69157017-69157039:-] 0.5508 151 7 -13.79 -0.4707 MIMAT0009457 mmu-miR-1839-3p 216848 Chd3 cgacaaccaucuAUUCAUCCAGa |:|||||||| acagacuaaauuUGAGUAGGUCa 2 12 814 836 [mm9:11:69157017-69157039:-] 0.5508 151 7 -13.79 -0.4470 MIMAT0009458 mmu-miR-1981 216848 Chd3 cggugcagauuCGGGUCGGAAAUg ||||:||||||| ggauuagccuuGCCCGGCCUUUAg 2 14 263 286 [mm9:11:69157448-69157471:-] 0.6213 161 7 -24.32 -0.1005 MIMAT0011217 mmu-miR-2141 216848 Chd3 uugaAAAGACUGUGGAGGa | ||| ||||||| uaucUCUCU-CCACCUCCa 2 16 45 62 [mm9:11:69157672-69157689:-] 0.6254 145 7 -14.22 -0.6739 MIMAT0011217 mmu-miR-2141 216848 Chd3 uuGAA-AAGACUGUGGAGGa ||| | | ||||||| uuCUUGUAGUAUCACCUCCa 2 18 226 245 [mm9:11:69157489-69157508:-] 0.6261 144 7 -14.75 -0.9254 MIMAT0011217 mmu-miR-2141 216848 Chd3 uugaAAAGACUGUGGAGGa | ||| ||||||| uaucUCUCU-CCACCUCCa 2 16 164 181 [mm9:11:69157672-69157689:-] 0.6254 145 7 -14.22 -0.6475 MIMAT0011217 mmu-miR-2141 216848 Chd3 uuGAA-AAGACUGUGGAGGa ||| | | ||||||| uuCUUGUAGUAUCACCUCCa 2 18 345 364 [mm9:11:69157489-69157508:-] 0.6261 144 7 -14.75 -0.8989 MIMAT0015640 mmu-miR-3470a 216848 Chd3 ggucggaccaGAU-GUUUCACu ||: ||||||| ccuccaccucCUGCCAAAGUGg 2 12 240 261 [mm9:11:69157473-69157494:-] 0.6261 142 7 -19.61 -0.1402 MIMAT0015640 mmu-miR-3470a 216848 Chd3 ggUCGGACCAGAUGUUUC-ACu | ||| || ||||||| || ggAACCUUGU-UACAAAGAUGa 2 20 316 336 [mm9:11:69157398-69157418:-] 0.6165 129 0 -16.50 -0.4108 MIMAT0015640 mmu-miR-3470a 216848 Chd3 ggucggaccaGAU-GUUUCACu ||: ||||||| ccuccaccucCUGCCAAAGUGg 2 12 359 380 [mm9:11:69157473-69157494:-] 0.6261 142 7 -19.61 -0.1296 MIMAT0015640 mmu-miR-3470a 216848 Chd3 ggUCGGACCAGAUGUUUC-ACu | ||| || ||||||| || ggAACCUUGU-UACAAAGAUGa 2 20 435 455 [mm9:11:69157398-69157418:-] 0.6165 129 0 -16.50 -0.3862 MIMAT0015645 mmu-miR-3473 216848 Chd3 ccgacUC-GGUAGAGAGGu || |: ||||||| uucccAGUCUUUCUCUCCc 2 14 869 887 [mm9:11:69156847-69156865:-] 0.6666 144 7 -15.48 -0.7258 MIMAT0015645 mmu-miR-3473 216848 Chd3 ccgacucgguAGAGAGGu ||||||| gaccccuaucUCUCUCCa 2 9 39 56 [mm9:11:69157678-69157695:-] 0.6254 140 7 -14.94 -0.8104 MIMAT0015645 mmu-miR-3473 216848 Chd3 ccgacUC-GGUAGAGAGGu || |: ||||||| uucccAGUCUUUCUCUCCc 2 14 988 1006 [mm9:11:69156847-69156865:-] 0.6666 144 7 -15.48 -0.6992 MIMAT0015645 mmu-miR-3473 216848 Chd3 ccgacucgguAGAGAGGu ||||||| gaccccuaucUCUCUCCa 2 9 158 175 [mm9:11:69157678-69157695:-] 0.6254 140 7 -14.94 -0.7904 MIMAT0015646 mmu-miR-3474 216848 Chd3 cuUAGGUGCAGAGGA-GGGUCCc | |::: |||||| |||||| ggAACUGU-UCUCCUCCCCAGGg 2 21 489 510 [mm9:11:69157224-69157245:-] 0.6158 130 6 -30.62 -0.2473 MIMAT0015646 mmu-miR-3474 216848 Chd3 cuuaggugcagaggAGGGUCCc ||||||| ---------cuggaUCCCAGGc 2 9 1 13 [mm9:11:69157840-69157852:-] 0.6023 140 7 -13.38 -0.2033 MIMAT0015646 mmu-miR-3474 216848 Chd3 cuUAGGUGCAGAGGA-GGGUCCc | |::: |||||| |||||| ggAACUGU-UCUCCUCCCCAGGg 2 21 608 629 [mm9:11:69157224-69157245:-] 0.6158 130 6 -30.62 -0.2319 MIMAT0000148 mmu-miR-136 216848 Chd3 gguaguaguuuuGUUUACCUCa ||||||||| uccucccucuucCAAAUGGAGg 2 11 384 405 [mm9:11:69157329-69157350:-] 0.5955 150 7 -16.91 -0.1868 MIMAT0000148 mmu-miR-136 216848 Chd3 gguaguaguuuuGUUUACCUCa ||||||||| uccucccucuucCAAAUGGAGg 2 11 503 524 [mm9:11:69157329-69157350:-] 0.5955 150 7 -16.91 -0.1732 MIMAT0000155 mmu-miR-142-3p 216848 Chd3 aggUAUUUCAUCCU-UUGU-GAUGu ||::|| :| | |||| |||| caaAUGGAG-GGUACAACAGCUACa 2 21 396 419 [mm9:11:69157315-69157338:-] 0.5745 121 0 -14.04 -0.6090 MIMAT0000155 mmu-miR-142-3p 216848 Chd3 aggUAUUUCAUCCU-UUGU-GAUGu ||::|| :| | |||| |||| caaAUGGAG-GGUACAACAGCUACa 2 21 515 538 [mm9:11:69157315-69157338:-] 0.5745 121 0 -14.04 -0.5796 MIMAT0000208 mmu-miR-10b 216848 Chd3 gugUUUAAGCCAAGAUGUCCCAu |:|| |||| ||||||| gggAGAU--GGUU-AACAGGGUc 2 21 116 135 [mm9:11:69157599-69157618:-] 0.6158 151 7 -18.75 -0.5900 MIMAT0000208 mmu-miR-10b 216848 Chd3 gugUUUAAGCCAAGAUGUCCCAu |:|| |||| ||||||| gggAGAU--GGUU-AACAGGGUc 2 21 235 254 [mm9:11:69157599-69157618:-] 0.6158 151 7 -18.75 -0.5610 MIMAT0000214 mmu-miR-185 216848 Chd3 aguccuuGACGGAAAGAGAGGu | |:|||||||||| ccuuuccCAGUCUUUCUCUCCc 2 16 866 887 [mm9:11:69156847-69156868:-] 0.6666 163 7 -20.71 -0.7295 MIMAT0000214 mmu-miR-185 216848 Chd3 agUCCUUGACGGAAAGAGAGGu |||| | : | ||||||| agAGGACCCCUAUCUCUCUCCa 2 21 35 56 [mm9:11:69157678-69157699:-] 0.6339 156 7 -21.22 -0.8242 MIMAT0000214 mmu-miR-185 216848 Chd3 agUCCUUGACGGAAAGA-GAGGu |||||||| |||| |||| guAGGAACUG---UUCUCCUCCc 2 21 486 505 [mm9:11:69157229-69157248:-] 0.6158 132 0 -23.87 -0.1516 MIMAT0000214 mmu-miR-185 216848 Chd3 aguccuuGACGGAAAGAGAGGu | |:|||||||||| ccuuuccCAGUCUUUCUCUCCc 2 16 985 1006 [mm9:11:69156847-69156868:-] 0.6666 163 7 -20.71 -0.7029 MIMAT0000214 mmu-miR-185 216848 Chd3 agUCCUUGACGGAAAGAGAGGu |||| | : | ||||||| agAGGACCCCUAUCUCUCUCCa 2 21 154 175 [mm9:11:69157678-69157699:-] 0.6339 156 7 -21.22 -0.8044 MIMAT0000214 mmu-miR-185 216848 Chd3 agUCCUUGACGGAAAGA-GAGGu |||||||| |||| |||| guAGGAACUG---UUCUCCUCCc 2 21 605 624 [mm9:11:69157229-69157248:-] 0.6158 132 0 -23.87 -0.1414 MIMAT0000220 mmu-miR-190 216848 Chd3 uggAUUAUAUAGUUUGUAUAgu | || :|:: |||||| aggUUAUCGGUUGUACAUAUaa 3 20 922 943 [mm9:11:69156791-69156812:-] 0.6666 131 0 -7.49 -0.2488 MIMAT0000220 mmu-miR-190 216848 Chd3 uggAUUAUAUAGUUUGUAUAgu | || :|:: |||||| aggUUAUCGGUUGUACAUAUaa 3 20 1041 1062 [mm9:11:69156791-69156812:-] 0.6666 131 0 -7.49 -0.2333 MIMAT0000235 mmu-miR-202-3p 216848 Chd3 agaAGGGUACGCGAUA-UGGAGa |::| ||: ||| ||||| gccUUUCUUGUAGUAUCACCUCc 2 20 222 244 [mm9:11:69157490-69157512:-] 0.6261 123 0 -15.91 -0.4637 MIMAT0000235 mmu-miR-202-3p 216848 Chd3 agaAGGGUACGCGAUA-UGGAGa |::| ||: ||| ||||| gccUUUCUUGUAGUAUCACCUCc 2 20 341 363 [mm9:11:69157490-69157512:-] 0.6261 123 0 -15.91 -0.4374 MIMAT0000237 mmu-miR-204 216848 Chd3 uccGUAUCCUACU-GUUUC-CCUu :||: ||| | ||||| ||| uucUAUGAGAUCAUCAAAGAGGAg 2 20 291 314 [mm9:11:69157420-69157443:-] 0.6165 126 0 -14.45 -0.4177 MIMAT0000237 mmu-miR-204 216848 Chd3 uccGUAUCCUACU-GUUUC-CCUu :||: ||| | ||||| ||| uucUAUGAGAUCAUCAAAGAGGAg 2 20 410 433 [mm9:11:69157420-69157443:-] 0.6165 126 0 -14.45 -0.3929 MIMAT0004576 mmu-miR-296-3p 216848 Chd3 ccUCUCGGAGGUGGGUUGGGAg :|:|||| : |||||||| uuGGGGCCUGUUGCCAACCCUc 2 21 63 84 [mm9:11:69157769-69157790:-] 0.6076 164 7 -30.40 -0.1520 MIMAT0000385 mmu-miR-106a 216848 Chd3 gauggaCGUGAC-AAUCGUGAAAc | :||| |:||||||| ggggggGGGCUGCAUGGCACUUUu 2 18 361 384 [mm9:11:69157350-69157373:-] 0.6165 152 7 -16.58 -0.1057 MIMAT0000529 mmu-miR-20a 216848 Chd3 gauggaCGUGAUAU-UCGUGAAAu | :||: | :||||||| ggggggGGGCUGCAUGGCACUUUu 2 18 361 384 [mm9:11:69157350-69157373:-] 0.6165 148 7 -17.05 -0.1068 MIMAT0000540 mmu-miR-93 216848 Chd3 gauggaCGUGCUUGUCGUGAAAc || :| |::||||||| ggggggGC-UGCAUGGCACUUUu 2 18 363 384 [mm9:11:69157350-69157371:-] 0.6165 151 7 -18.22 -0.1079 MIMAT0000565 mmu-miR-328 216848 Chd3 ugCCUUCCCGUCUCUCCCGGUc ||::| || ||||||||| ugGGGGGAACACAGAGGGCCAg 2 21 602 623 [mm9:11:69157111-69157132:-] 0.5999 168 7 -34.66 -0.1033 MIMAT0004642 mmu-miR-330 216848 Chd3 cgGAUUCUGUGUCCGG-GUCUCu | |:||| || || ||||| acCAAGGAC-CACCCCACAGAGu 2 21 511 532 [mm9:11:69157202-69157223:-] 0.5999 122 0 -21.76 -0.1188 MIMAT0004642 mmu-miR-330 216848 Chd3 cgGAUUCUGUGUCCGG-GUCUCu | |:||| || || ||||| acCAAGGAC-CACCCCACAGAGu 2 21 630 651 [mm9:11:69157202-69157223:-] 0.5999 122 0 -21.76 -0.1106 MIMAT0000648 mmu-miR-10a 216848 Chd3 guguuuaagcCUAGAUGUCCCAu |:|: ||||||| ggugggagauGGUUAACAGGGUc 2 14 113 135 [mm9:11:69157599-69157621:-] 0.6158 149 7 -15.37 -0.5937 MIMAT0000648 mmu-miR-10a 216848 Chd3 guguuuaagcCUAGAUGUCCCAu |:|: ||||||| ggugggagauGGUUAACAGGGUc 2 14 232 254 [mm9:11:69157599-69157621:-] 0.6158 149 7 -15.37 -0.5646 MIMAT0000649 mmu-miR-17 216848 Chd3 gauggaCGUGACAU-UCGUGAAAc | :||| | :||||||| ggggggGGGCUGCAUGGCACUUUu 2 18 361 384 [mm9:11:69157350-69157373:-] 0.6165 152 7 -16.15 -0.1057 MIMAT0000666 mmu-miR-320 216848 Chd3 agCGGGAGAGUUGGGUC-GAAAa ||| ||: ||||| |||| uuGCCGCCUU-UCCCAGUCUUUc 2 21 860 881 [mm9:11:69156853-69156874:-] 0.6666 122 0 -20.67 -0.3626 MIMAT0000666 mmu-miR-320 216848 Chd3 agCGGGAGAGUUGGGUC-GAAAa ||| ||: ||||| |||| uuGCCGCCUU-UCCCAGUCUUUc 2 21 979 1000 [mm9:11:69156853-69156874:-] 0.6666 122 0 -20.67 -0.3422 MIMAT0000677 mmu-miR-7a 216848 Chd3 ugUUGUUUUAGUGAU--CAGAAGGu :| | ::|:| | ||||||| ggGAGAUGGUUAACAGGGUCUUCCa 2 22 116 140 [mm9:11:69157594-69157618:-] 0.6158 144 7 -16.34 -0.3142 MIMAT0000677 mmu-miR-7a 216848 Chd3 ugUUGUUUUAGUGAU--CAGAAGGu :| | ::|:| | ||||||| ggGAGAUGGUUAACAGGGUCUUCCa 2 22 235 259 [mm9:11:69157594-69157618:-] 0.6158 144 7 -16.34 -0.2936 MIMAT0000678 mmu-miR-7b 216848 Chd3 ugUUGUUUUAG-UGU-UCAGAAGGu :| | ::|: ||| :||||||| ggGAGAUGGUUAACAGGGUCUUCCa 2 22 116 140 [mm9:11:69157594-69157618:-] 0.6158 151 7 -17.18 -0.3142 MIMAT0000678 mmu-miR-7b 216848 Chd3 ugUUGUUUUAG-UGU-UCAGAAGGu :| | ::|: ||| :||||||| ggGAGAUGGUUAACAGGGUCUUCCa 2 22 235 259 [mm9:11:69157594-69157618:-] 0.6158 151 7 -17.18 -0.2936 MIMAT0000748 mmu-miR-383 216848 Chd3 ucGGUGUCAGUG--GAAGAC-UAGa :| || || | |||||| ||| ugUCCCAAUCCCUUCUUCUGUAUCa 2 21 898 922 [mm9:11:69156812-69156836:-] 0.6666 123 0 -16.03 -0.8577 MIMAT0000748 mmu-miR-383 216848 Chd3 ucGGUGUCAGUG--GAAGAC-UAGa :| || || | |||||| ||| ugUCCCAAUCCCUUCUUCUGUAUCa 2 21 1017 1041 [mm9:11:69156812-69156836:-] 0.6666 123 0 -16.03 -0.8325 MIMAT0001092 mmu-miR-376b 216848 Chd3 uucaccUACAAGGAGAUACUa | | |:||||||| gccuuuAGGAACUUCUAUGAg 2 16 279 299 [mm9:11:69157435-69157455:-] 0.6165 147 7 -14.50 -0.5705 MIMAT0001092 mmu-miR-376b 216848 Chd3 uucaccUACAAGGAGAUACUa | | |:||||||| gccuuuAGGAACUUCUAUGAg 2 16 398 418 [mm9:11:69157435-69157455:-] 0.6165 147 7 -14.50 -0.5417 MIMAT0003377 mmu-miR-302d 216848 Chd3 uguGAGUUUGUACCUUCGU-GAAu ||| :::|| |||| ||| uacCUCCUGUGUGUCAGCAUCUUg 2 21 460 483 [mm9:11:69157251-69157274:-] 0.6318 120 0 -15.09 -0.3593 MIMAT0003377 mmu-miR-302d 216848 Chd3 uguGAGUUUGUACCUUCGU-GAAu ||| :::|| |||| ||| uacCUCCUGUGUGUCAGCAUCUUg 2 21 579 602 [mm9:11:69157251-69157274:-] 0.6318 120 0 -15.09 -0.3390 MIMAT0003450 mmu-miR-488 216848 Chd3 cugguucuuugucGGAAAGuu |||||| uaaauuauacuuuCCUUUC-- 3 9 941 959 [mm9:11:69156775-69156793:-] 0.6666 120 0 -6.52 -0.3007 MIMAT0003450 mmu-miR-488 216848 Chd3 cugguucuuugucGGAAAGuu |||||| uaaauuauacuuuCCUUUC-- 3 9 1060 1078 [mm9:11:69156775-69156793:-] 0.6666 120 0 -6.52 -0.2828 MIMAT0003486 mmu-miR-491 216848 Chd3 ggaguaccuucccAAGGGGUGa |||||||| ccaacccuccaccUUCCCCACc 2 10 76 97 [mm9:11:69157756-69157777:-] 0.6076 145 7 -17.69 -0.3161 MIMAT0003780 mmu-miR-490 216848 Chd3 gucguaccucaggaGGUCCAAc :|||||| ucccuucuucuguaUCAGGUUa 2 9 906 927 [mm9:11:69156807-69156828:-] 0.6666 124 6 -9.62 -0.1485 MIMAT0003780 mmu-miR-490 216848 Chd3 gucguaccucaggaGGUCCAAc :|||||| ucccuucuucuguaUCAGGUUa 2 9 1025 1046 [mm9:11:69156807-69156828:-] 0.6666 124 6 -9.62 -0.1385 MIMAT0003783 mmu-miR-615-3p 216848 Chd3 uucucccucuGGGUCCGAGCCu | | ||||||| gauugcuguuCACUGGCUCGGu 2 13 438 459 [mm9:11:69157275-69157296:-] 0.6318 144 7 -16.99 -0.4472 MIMAT0003783 mmu-miR-615-3p 216848 Chd3 uucucccucuGGGUCCGAGCCu | | ||||||| gauugcuguuCACUGGCUCGGu 2 13 557 578 [mm9:11:69157275-69157296:-] 0.6318 144 7 -16.99 -0.4229 MIMAT0004847 mmu-miR-882 216848 Chd3 ugauuacGCGAUUGAGAGAGGa | ||| |||||||| agaggacCCCUAUCUCUCUCCa 2 16 35 56 [mm9:11:69157678-69157699:-] 0.6339 159 7 -17.13 -0.8242 MIMAT0004847 mmu-miR-882 216848 Chd3 ugauuacgcgauuGAGAGAGGa :||||||| ccuuucccagucuUUCUCUCCc 2 10 866 887 [mm9:11:69156847-69156868:-] 0.6666 141 7 -13.72 -0.7332 MIMAT0004847 mmu-miR-882 216848 Chd3 ugauuacGCGAUUGAGAGAGGa | ||| |||||||| agaggacCCCUAUCUCUCUCCa 2 16 154 175 [mm9:11:69157678-69157699:-] 0.6339 159 7 -17.13 -0.8044 MIMAT0004847 mmu-miR-882 216848 Chd3 ugauuacgcgauuGAGAGAGGa :||||||| ccuuucccagucuUUCUCUCCc 2 10 985 1006 [mm9:11:69156847-69156868:-] 0.6666 141 7 -13.72 -0.7066 MIMAT0004852 mmu-miR-190b 216848 Chd3 uuggguuaUAGUUUGUAUAgu :|:: |||||| gguuaucgGUUGUACAUAUaa 3 14 923 943 [mm9:11:69156791-69156811:-] 0.6666 125 0 -8.16 -0.2510 MIMAT0004852 mmu-miR-190b 216848 Chd3 uuggguuaUAGUUUGUAUAgu :|:: |||||| gguuaucgGUUGUACAUAUaa 3 14 1042 1062 [mm9:11:69156791-69156811:-] 0.6666 125 0 -8.16 -0.2354 MIMAT0004854 mmu-miR-876-5p 216848 Chd3 aucaCUAAGUGUCU----CUUUAGGu |:||: :||: ||||||| cucaGGUUUCUAGGGGACGAAAUCCu 2 19 650 675 [mm9:11:69157059-69157084:-] 0.5508 145 7 -14.82 -0.1169 MIMAT0004854 mmu-miR-876-5p 216848 Chd3 aucaCUAAGUGUCU----CUUUAGGu |:||: :||: ||||||| cucaGGUUUCUAGGGGACGAAAUCCu 2 19 769 794 [mm9:11:69157059-69157084:-] 0.5508 145 7 -14.82 -0.1088 MIMAT0004889 mmu-miR-504 216848 Chd3 cuaUCUC-ACGUCUGGUCCCAGa :||| || | ||||||| gugGGAGAUGGUUAACAGGGUCu 2 20 114 136 [mm9:11:69157598-69157620:-] 0.6158 150 7 -21.14 -0.6747 MIMAT0004889 mmu-miR-504 216848 Chd3 cuaUCUC-ACGUCUGGUCCCAGa :||| || | ||||||| gugGGAGAUGGUUAACAGGGUCu 2 20 233 255 [mm9:11:69157598-69157620:-] 0.6158 150 7 -21.14 -0.6449 MIMAT0004896 mmu-miR-590-3p 216848 Chd3 ugAUCGAAUAUGUAU-UUUAAu | | ||:|||||| ||||| uaUCGGUUGUACAUAUAAAUUa 2 20 926 947 [mm9:11:69156787-69156808:-] 0.6666 139 0 -12.19 -1.1497 MIMAT0004896 mmu-miR-590-3p 216848 Chd3 ugAUCGAAUAUGUAU-UUUAAu | | ||:|||||| ||||| uaUCGGUUGUACAUAUAAAUUa 2 20 1045 1066 [mm9:11:69156787-69156808:-] 0.6666 139 0 -12.19 -1.1350

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052052 Chd3 Mus musculus 216848 19536157 0 0 R44982; MOUSE$CHD3_01; Binding factors: mmu-miR-27a-3p , mmu-miR-27b-3p , mmu-miR-350-3p // 0 0 R44996; MOUSE$CHD3_10; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7d-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-202-3p , mmu-miR-98-5p // 0 0 R44995; MOUSE$CHD3_09; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1906 , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p , mmu-miR-761 // 0 0 R44994; MOUSE$CHD3_08; Binding factors: mmu-miR-26a-5p , mmu-miR-26b-5p // 0 0 R44993; MOUSE$CHD3_07; Binding factors: mmu-miR-9-5p // 0 0 R44991; MOUSE$CHD3_05; Binding factors: mmu-miR-27a-3p , mmu-miR-27b-3p , mmu-miR-350-3p // 0 0 R44990; MOUSE$CHD3_04; Binding factors: mmu-miR-124-3p // 0 0 R44989; MOUSE$CHD3_03; Binding factors: mmu-miR-133a-3p , mmu-miR-133b-3p , mmu-miR-9-5p // 0 0 R44988; MOUSE$CHD3_02; Binding factors: mmu-miR-128-3p , mmu-miR-27a-3p , mmu-miR-27b-3p // 0 0 R44998; MOUSE$CHD3_12; Binding factors: mmu-miR-26a-5p , mmu-miR-26b-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Chd3 mmu-miR-881 beg:875 end:890 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& ||. ||||||| &5' --------GAGCA-ACACAGT- 3' Chd3 mmu-miR-10a beg:239 end:254 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& |.|. ||||||| &5' ----------GGTTAACAGGGT- 3' Chd3 mmu-miR-1 beg:906 end:923 pic:3' TATGTATGAAGAAA-TGTAAGGT 5'& ||| ||||||| &5' --------TTCGGGCACATTCC- 3' Chd3 mmu-miR-877star beg:150 end:161 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||||||| &5' -------------AAGAGGAC- 3' Chd3 mmu-miR-295star beg:816 end:830 pic:3' CTTCACACGGGGTGTAAACTCA 5'& |.| |||||||| &5' ----------CTAAATTTGAGT 3' Chd3 mmu-miR-296-3p beg:65 end:85 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& |.|||| . ||||||||| &5' ---GGGCCTGTTGCCAACCCTC 3' Chd3 mmu-miR-2141 beg:167 end:181 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||| ||||||| &5' ------TCTC-CACCTCC- 3' Chd3 mmu-miR-2141 beg:354 end:364 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||||||| &5' -----------CACCTCC- 3' Chd3 mmu-miR-299 beg:36 end:55 pic:3' TTCGCCAAATGGCAGGGTGTAT 5'& ||| .||| ||||||| &5' ---CGGA--GCCGACCCACAT- 3' Chd3 mmu-miR-92astar beg:81 end:98 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||||| |||||||| &5' ------CCACCT-TCCCCACC- 3' Chd3 mmu-miR-1982star beg:330 end:349 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||| |||||| ||.|.|. &5' CCT-CCCAGG-CCTTTCT-- 3' Chd3 mmu-miR-1943 beg:493 end:511 pic:3' AGGTCCACG-GGTCTAGGAGGGAA 5'& || |. |||||||| &5' -------GCACTTT-TCCTCCCT- 3' Chd3 mmu-miR-665 beg:998 end:1016 pic:3' TCCCTGGAGTCGGAGGACCA 5'& .||| |||||||| &5' -----TCTCCCACTCCTGGT 3' Chd3 mmu-miR-1953 beg:978 end:994 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| |||||||| &5' -----GCCGC----CTTTCCCA 3' Chd3 mmu-miR-1958 beg:1064 end:1076 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& .|||||||| &5' ------------TACTTTCCT- 3' Chd3 mmu-miR-876-5p beg:778 end:794 pic:3' ATCACTAAGTGTCT-CTTTAGGT 5'& . .|| ||||||| &5' ---------GGGGACGAAATCC- 3' Chd3 mmu-miR-323-5p beg:624 end:643 pic:3' CGCTTGCGC-GGTGCCTGGTGGA 5'& | | ||| |||||||| &5' ------GGGACCAAGGACCACC- 3' Chd3 mmu-miR-106b beg:486 end:503 pic:3' TAGACGTGACAGTCGTGAAAT 5'& |||||. .||||||| &5' --CTGCAT----GGCACTTT- 3' Chd3 mmu-miR-546 beg:96 end:111 pic:3' CTGAGGCACGGTGGTA 5'& ||. | ||||||| &5' --CTTGG-GCCACCA- 3' Chd3 mmu-miR-423-5p beg:119 end:137 pic:3' TTTCAGAGCGA-GAGACGGGGAGT 5'& || .|.|||||||| &5' --------GCCCTTTTGCCCCTC- 3' Chd3 mmu-miR-1946a beg:385 end:400 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& .|| .|||||||| &5' -------------GCC-TTGCCCGGC- 3' Chd3 mmu-miR-1971 beg:387 end:405 pic:3' AGAGTCGGGTCGGAAATG 5'& ||. ||||.||||||| &5' -CTT-GCCCGGCCTTTA- 3' Chd3 mmu-miR-1981 beg:387 end:405 pic:3' CGGTGCAGATTCGGGTCGGAAATG 5'& ||| ||||.||||||| &5' GCCTT------GCCCGGCCTTTA- 3' Chd3 mmu-miR-133a beg:624 end:636 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& ||||||||. &5' -------------GGGACCAAG 3' Chd3 mmu-miR-133b beg:624 end:636 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& ||||||||. &5' -------------GGGACCAAG 3' Chd3 mmu-miR-290-3p beg:483 end:503 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& ||||| .|||||||| &5' GGGCTGCA-------TGGCACTTT 3' Chd3 mmu-miR-467a beg:485 end:502 pic:3' GCGTATATGTACGT-CCGTGAAT 5'& .| |||| ||||||| &5' -------GC-TGCATGGCACTT- 3' Chd3 mmu-miR-1839-3p beg:823 end:836 pic:3' CGACAACCATCTATTCATCCAGA 5'& |.|||||||| &5' ------------TGAGTAGGTC- 3' Chd3 mmu-miR-378star beg:839 end:858 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& .|||||| ||||||||| &5' ----GGGACCT--AGTCAGGAG 3' Chd3 mmu-miR-7a beg:242 end:260 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& .||||. .|||||||| &5' -TAACAG-------GGTCTTCCA 3' Chd3 mmu-miR-1193 beg:702 end:714 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||||||| &5' ------------GGTGACCTA 3' Chd3 mmu-miR-532-3p beg:222 end:240 pic:3' ACGTTCGGAACCCACACCCTCC 5'& |.|.|| ||||||| &5' ---AGGTCTAG---GTGGGAG- 3' Chd3 mcmv-miR-m01-1 beg:602 end:623 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& || || |.|||||||| &5' --GTAGGAAC-TGTTCTCCTC- 3' Chd3 mcmv-miR-m01-1 beg:491 end:508 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& .|.| ||.||||| &5' -----TGGCAC--TTTTCCTC- 3' Chd3 mcmv-miR-m01-3 beg:5 end:26 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& | |||| | | ||||||| &5' -CCAGGCCT--GCC-CTTCACC- 3' Chd3 mcmv-miR-M23-2 beg:77 end:96 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || || ||| .||||| &5' CC-CTCCACCT---TCCCCA- 3' Chd3 mcmv-miR-M23-2 beg:344 end:365 pic:3' GGCGAACTGGCTCC-GGGGGTA 5'& |||| ||.||| &5' ---CTTGTAGTATCACCTCCA- 3' Chd3 mcmv-miR-M23-2 beg:673 end:695 pic:3' GGCGAACTGGCTCC---GGGGGTA 5'& || |||| .||||| &5' --GCCAAA--GAGGAGCTCCCCA- 3' Chd3 mghv-miR-M1-2 beg:465 end:492 pic:3' TTTC-TCCC--CCTCTCCCCCAGAC 5'& .|.| |||| ||.|.||||| ||| &5' GAGGAAGGGAAGGGGGGGGGG-CTG 3' Chd3 mghv-miR-M1-7-5p beg:69 end:91 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& |||.|| |||||||||| &5' --GTTGCCAACCCTCCACCTT- 3' Chd3 mmu-let-7c-1star beg:1038 end:1058 pic:3' CCTTTCGATCTTCCAACATGTC 5'& |.|.|| ||||||||| &5' ---AGGTTATC-GGTTGTACA- 3' Chd3 mmu-let-7e beg:153 end:170 pic:3' TTGATATGTTGGAGGATGGAGT 5'& | .||| ||||.||| &5' ------AGGACC-CCTATCTC- 3' Chd3 mmu-miR-106a beg:484 end:503 pic:3' GATGGACGTGACAATCGTGAAAC 5'& . |||||. .||||||| &5' --GGCTGCAT----GGCACTTT- 3' Chd3 mmu-miR-10b beg:233 end:254 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& ..| .|||| ||||||| &5' ---GGAGATGGTTA-ACAGGGT- 3' Chd3 mmu-miR-1196 beg:312 end:332 pic:3' TCCG-TCTCCGTCCATCTAAA 5'& .|| .|||| ||||.|| &5' GGGAGGGAGG-AGGTGGA--- 3' Chd3 mmu-miR-1199 beg:754 end:774 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& || | || |.|||.|||||. &5' CC-CACG-CTGGGGCTCAGG 3' Chd3 mmu-miR-1224 beg:789 end:804 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& |||||| ||.||| &5' -----CCTCCC---TCTTCA- 3' Chd3 mmu-miR-1224 beg:79 end:102 pic:3' GAGGTGG-AGGGGTCAGGAGTG 5'& ||||||| |||||| |||. &5' CTCCACCTTCCCCACCCCTT-- 3' Chd3 mmu-miR-125a-3p beg:394 end:417 pic:3' CCGAGGGTTCTTGGAGTGGACA 5'& ||| ..|.||||.|| || &5' GGCCTTTAGGAACTTCTA-TG- 3' Chd3 mmu-miR-125b-3p beg:328 end:352 pic:3' TC-GAGGGTTCTCGGATTGGGCA 5'& || |||||| .|||| |..|| &5' AGCCTCCCA--GGCCTTTCTTGT 3' Chd3 mmu-miR-130bstar beg:530 end:549 pic:3' TCATCACGTTGTCC-CTTTCTCA 5'& || ||| | ||.|||| &5' ------GCTACAAGTGAGAGAG- 3' Chd3 mmu-miR-130bstar beg:312 end:324 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& ||||..||| &5' ------------GGGAGGGAG- 3' Chd3 mmu-miR-130bstar beg:463 end:483 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& || | ||||||.|.| &5' ---AG-GAGGAAGGGAAGGGG- 3' Chd3 mmu-miR-149 beg:722 end:743 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||.| ||| ||| |.|||||. &5' -GGGG-GAACACAGAGGGCCAGG 3' Chd3 mmu-miR-150 beg:223 end:241 pic:3' GTGACCATGTTCCCAACCCTCT 5'& ||| | ||| ||||||| &5' ----GGT-CTAGG--TGGGAGA 3' Chd3 mmu-miR-150star beg:1013 end:1043 pic:3' GATAGG----GGGTCC-GGACATGGTC 5'& ||.||| ||| .|||||.||| &5' CTGTCCCAATCCCTTCTTCTGTATCAG 3' Chd3 mmu-miR-150star beg:331 end:359 pic:3' GATAGGGGGTCCGGA--------CATGGTC 5'& |.||||||||| |||.|| &5' ----CTCCCAGGCCTTTCTTGTAGTATCA- 3' Chd3 mmu-miR-15b beg:547 end:567 pic:3' ACATTTGGTACTACACGACGAT 5'& | |.| |||| |||||.| &5' -GCGAGC--TGAT-TGCTGTT- 3' Chd3 mmu-miR-17 beg:484 end:503 pic:3' GATGGACGTGACATTCGTGAAAC 5'& . |||||. .||||||| &5' --GGCTGCAT----GGCACTTT- 3' Chd3 mmu-miR-182 beg:358 end:377 pic:3' GCCACACTCAAGATGGTA-ACGGTTT 5'& || ||| ||||||| &5' ----------TCCACCTCCTGCCAAA 3' Chd3 mmu-miR-182 beg:61 end:80 pic:3' GCCACACTCAAGATGG-TAACGGTTT 5'& ||.| .|| .||||||| &5' -----TGGG----GCCTGTTGCCAA- 3' Chd3 mmu-miR-185 beg:154 end:176 pic:3' AGTCCTTGACGGAA--AGAGAGGT 5'& |||| ||| |||||||| &5' --AGGACC--CCTATCTCTCTCCA 3' Chd3 mmu-miR-185 beg:991 end:1006 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |.|||||||||| &5' ---------GTCTTTCTCTCC- 3' Chd3 mmu-miR-185 beg:780 end:804 pic:3' AGTCCTTGAC---GGAAAGAGAGGT 5'& .||.|| ||| ||||.|| &5' --GGGGACGAAATCCTCCCTCTTCA 3' Chd3 mmu-miR-188-3p beg:854 end:876 pic:3' ACGTTTGGGACGTACACCCTC 5'& || ..|.||| ||||||| &5' -GCCTGTCTTGCCTGTGGGA- 3' Chd3 mmu-miR-1894-5p beg:461 end:487 pic:3' TCTCCGTCCA--CCATCCCCTCTC 5'& .|||| ||| || |||||.|.| &5' GGAGG-AGGAAGGGAAGGGGGGGG 3' Chd3 mmu-miR-1894-5p beg:887 end:909 pic:3' TCTCC----GTCCACCATCCCCTCTC 5'& | || |||| || |||||| &5' -GTGGATATCAGGC--TA-GGGAGA- 3' Chd3 mmu-miR-18a beg:582 end:602 pic:3' GATAGACGTGATCTACGTGGAAT 5'& ||| . |||.|||. &5' ----CTGTGTGTCA-GCATCTTG 3' Chd3 mmu-miR-18a beg:486 end:503 pic:3' GATAGACGTGATCTACGTGGAAT 5'& |||||. ||||.|| &5' ----CTGCATG----GCACTTT- 3' Chd3 mmu-miR-18astar beg:732 end:754 pic:3' GTCTTCC---TCGTGAATCCCGTCA 5'& |||.|| .|||. .|||||| &5' -AGAGGGCCAGGCAT--GGGGCAG- 3' Chd3 mmu-miR-1902 beg:484 end:504 pic:3' TTCAGTACGGATGA--CGTGGAGA 5'& | ||.| ||||.|.| &5' -------GGCTGCATGGCACTTTT 3' Chd3 mmu-miR-1903 beg:307 end:331 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& |||| |.|||.|.||.||. || &5' TGTC-CGGGAGGGAGGAGGTGG 3' Chd3 mmu-miR-192 beg:819 end:838 pic:3' CCGACAGTTAAG--TATCCAGTC 5'& ||||. .|||||||| &5' -------AATTTGAGTAGGTCAG 3' Chd3 mmu-miR-1929 beg:694 end:717 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||.|||| | ||||||| &5' --CTGTTCTAGGT-GACCTAGAA 3' Chd3 mmu-miR-1929 beg:790 end:813 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||| |||| ||.| |||.|| &5' CTCC-CTCTTCAAGG-CCTGGA- 3' Chd3 mmu-miR-1934 beg:730 end:755 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& |||||.| |.||| |||. |||| &5' AGAGGGCCAGGCATGGGG-CAGA 3' Chd3 mmu-miR-1938 beg:176 end:197 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& || || || ||||||| &5' --CCACAC-ACCTTTCCCACC- 3' Chd3 mmu-miR-193star beg:144 end:163 pic:3' AGTAGAACGGGCG---TTTCTGGGT 5'& ||| .|.||||| &5' --------CCCTTCAAGAGGACCC- 3' Chd3 mmu-miR-1940 beg:343 end:365 pic:3' TTGACGAGGTGGAAGAG--TCA----GGAGGTA 5'& .||||. ||| |||||| &5' -----------TTTCTTGTAGTATCACCTCCA- 3' Chd3 mmu-miR-1941-5p beg:154 end:173 pic:3' TTCGGAGACATGGTCGTAGAGGGA 5'& | ||| .|||||.|| &5' --------GGACCCCTATCTCTCT 3' Chd3 mmu-miR-1946a beg:557 end:580 pic:3' TTTTCACACACGGTG-GTGA-CGGGCCGA 5'& ||| . |||| ||.|||.| &5' ---------TGCTGTTCACTGGCTCGGTT 3' Chd3 mmu-miR-1952 beg:313 end:332 pic:3' GTCTTCCTC--CCACCTCT 5'& .||.|||| ||||||| &5' -GGAGGGAGGAGGTGGAG- 3' Chd3 mmu-miR-1952 beg:709 end:726 pic:3' GTCTTCCTCCCACCTCT 5'& .|||| |||||||.|. &5' TAGAA--AGGGTGGGGG 3' Chd3 mmu-miR-1952 beg:472 end:488 pic:3' GTCTTCCTCCCACCTCT 5'& .|||||.||| ||.| &5' -GGAAGGGGGG-GGGG- 3' Chd3 mmu-miR-1953 beg:173 end:195 pic:3' GTCTTCGGACTCTT---GAAAGGGT 5'& ||| |||||||| &5' ------CCTCCACACACCTTTCCCA 3' Chd3 mmu-miR-1956 beg:791 end:814 pic:3' AGGCGACTGAG-TCGGGACCTGA 5'& ||| || .|| || ||||||. &5' TCC-CTC-TTCAAGGCCTGGAT- 3' Chd3 mmu-miR-1962 beg:385 end:404 pic:3' TACACAGGGTCAC-GGTCGGAGA 5'& | ||. || ||.||||.| &5' ----G-CCT--TGCCCGGCCTTT 3' Chd3 mmu-miR-1967 beg:493 end:512 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& ||| |||.|||.| |||| &5' GCA-CTTTTCCTC-----CCTC- 3' Chd3 mmu-miR-1967 beg:161 end:180 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& .||| ||||.||| |||| &5' -TATC-TCTCTCCA----CCTC- 3' Chd3 mmu-miR-1967 beg:241 end:258 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& |. ||||.||.|| &5' --------TTAACAGGGTCTTC- 3' Chd3 mmu-miR-1982.2 beg:720 end:739 pic:3' GACACCCTCTTGTA--TCCCACT 5'& || |||.||||| |||| &5' -TG-GGGGGAACACAGAGGG--- 3' Chd3 mmu-miR-1983 beg:218 end:238 pic:3' TCTTTTGTACGAGGTCCACTC 5'& |||.| | ||.|||||.| &5' -GAAGA---GGTCTAGGTGGG 3' Chd3 mmu-miR-200astar beg:689 end:710 pic:3' AGGTCGTGACAGG--CCATTCTAC 5'& ||||| ||||.| |||.| &5' -CCAGC-CTGTTCTAGGTGA---- 3' Chd3 mmu-miR-203star beg:625 end:642 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& |.|| ||||.||||| &5' ----GGAC---CAAGGACCAC- 3' Chd3 mmu-miR-206 beg:176 end:202 pic:3' GGTGTGTG--AAGGAATGTAAGGT 5'& |||||||| |||| || || &5' CCACACACCTTTCCCACCAAACC- 3' Chd3 mmu-miR-20a beg:484 end:503 pic:3' GATGGACGTGATATTCGTGAAAT 5'& . |||||. .||||||| &5' --GGCTGCAT----GGCACTTT- 3' Chd3 mmu-miR-20b beg:484 end:503 pic:3' GATGGACGTGATACTCGTGAAAC 5'& . |||||. .||||||| &5' --GGCTGCAT----GGCACTTT- 3' Chd3 mmu-miR-2135 beg:327 end:347 pic:3' CAAAGC-CGG-GGTTCTGGAGA 5'& | ||| || ||.|||.| &5' -----GAGCCTCCCAGGCCTTT 3' Chd3 mmu-miR-2140 beg:1021 end:1041 pic:3' TGGTGGTTCTAGACGTGGA 5'& |.| || ||||.|.| &5' ATC-CCTTCTTCTGTATC- 3' Chd3 mmu-miR-2145 beg:5 end:23 pic:3' TTGGTCCGGGCTGGGACGA 5'& |||||||.| |||| | &5' --CCAGGCCTG-CCCTTC- 3' Chd3 mmu-miR-215 beg:1030 end:1055 pic:3' CAGAC--AGTTTAGTATCCAGTA 5'& |||| |||..|.|| ||| | &5' -TCTGTATCAGGTTATCGGTTGT 3' Chd3 mmu-miR-215 beg:817 end:837 pic:3' CAGACAGTTTAG---TATCCAGTA 5'& .||||. .||||||| &5' ------TAAATTTGAGTAGGTCA- 3' Chd3 mmu-miR-217 beg:588 end:608 pic:3' AGGTCAGTCAAGGACTACGTCAT 5'& ||||| .|| ||||||| &5' ----GTCAGCATCT--TGCAGTA 3' Chd3 mmu-miR-21star beg:546 end:567 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& ||| . .||.||||||| &5' ---AGCGAGCTGATTGCTGTT- 3' Chd3 mmu-miR-22 beg:936 end:955 pic:3' TGTCAAGAAGTTGACCGTCGAA 5'& ||| .| ||||||.|| &5' -CAGG-----GAGTGGCAGTTT 3' Chd3 mmu-miR-23a beg:206 end:223 pic:3' CCTTTAGGGAC-CG-TTACACTA 5'& ||| || ..||||| &5' --------CTGTGCTGGTGTGA- 3' Chd3 mmu-miR-23b beg:206 end:223 pic:3' CCATTAGGGAC-CG-TTACACTA 5'& ||| || ..||||| &5' --------CTGTGCTGGTGTGA- 3' Chd3 mmu-miR-2861 beg:324 end:346 pic:3' GGCGGG-CGGC-GGTCCGGGG 5'& |. ||| |||||||.. &5' --GTGGAGCCTCCCAGGCCTT 3' Chd3 mmu-miR-291a-3p beg:485 end:503 pic:3' CG-TGTGTTTCACCTTCGTGAAA 5'& || .||. .||||||| &5' GCTGCAT--------GGCACTTT 3' Chd3 mmu-miR-295 beg:483 end:503 pic:3' TCTGA-GTTTTCATCATCGTGAAA 5'& .|.|| || |.||||||| &5' GGGCTGCA-------TGGCACTTT 3' Chd3 mmu-miR-296-5p beg:54 end:72 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||| ||||||. &5' -CAGGCCTT----GGGGCCT- 3' Chd3 mmu-miR-300 beg:938 end:957 pic:3' CTTCTCTCGAACGG-GAACGTAT 5'& ||.|||. || .|||||| &5' --AGGGAGTG-GCAGTTTGCAT- 3' Chd3 mmu-miR-300star beg:783 end:805 pic:3' TGTTTCCTATTGGAGAGAAGTT 5'& ||.|| || |||||||| &5' ACGAAATCCT-CC-CTCTTCAA 3' Chd3 mmu-miR-3072 beg:467 end:490 pic:3' TCTTCCGAAGGACCTCCCCCGT 5'& .||||| ||.|||||| &5' GGAAGGGAAGG-GGGGGGGGC- 3' Chd3 mmu-miR-3099 beg:332 end:355 pic:3' AGGGGTTGGAGAGAG-ATCGGAT 5'& |||| .|||.|||. |||. &5' TCCCAGGCCTTTCTTGTAGT--- 3' Chd3 mmu-miR-3099 beg:985 end:1007 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |.|||| ||.||||| || &5' TTCCCAGTCTTTCTCTC-CC-- 3' Chd3 mmu-miR-3099 beg:157 end:179 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |||| |.||||||| ||| &5' -CCCCTATCTCTCTCCA-CCT- 3' Chd3 mmu-miR-30c-1star beg:995 end:1008 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& ..|||||||| &5' -----------TTCTCTCCCA- 3' Chd3 mmu-miR-30c-1star beg:178 end:195 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& ||| |||.||||| &5' -------ACACACCTTTCCCA- 3' Chd3 mmu-miR-30c-1star beg:982 end:995 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& |||.|||||| &5' ------------CCTTTCCCAG 3' Chd3 mmu-miR-30c-2star beg:978 end:995 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& .| ||| |.|||||| &5' -------GCCGCC-TTTCCCAG 3' Chd3 mmu-miR-30c-2star beg:180 end:194 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||| || |.||||| &5' -------ACA-CC-TTTCCCA- 3' Chd3 mmu-miR-30c-2star beg:989 end:1008 pic:3' TCTCATTTGTCGGA---AGAGGGTC 5'& |||.|| ||||||| &5' --------CAGTCTTTCTCTCCCA- 3' Chd3 mmu-miR-31 beg:854 end:870 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ||| .|||||||| &5' -------GCCT--GTCTTGCCT 3' Chd3 mmu-miR-31star beg:477 end:499 pic:3' CTACCGTTATACAACCGTATCGT 5'& || .. | ||||.||| &5' ---GGGGGGGGGGCTGCATGGCA 3' Chd3 mmu-miR-327 beg:787 end:806 pic:3' TAGGAGTACGGGGAGTTCA 5'& |||||| |.|.||||| &5' ATCCTCC--CTCTTCAAG- 3' Chd3 mmu-miR-327 beg:141 end:156 pic:3' TAGGAGTACGGGGAGTTCA 5'& ||| |||.||||| &5' --CCT----CCCTTCAAG- 3' Chd3 mmu-miR-328 beg:719 end:743 pic:3' TGCCTTCCC-GTCTCTCCCGGTC 5'& ||..|| || |||||||||| &5' --GGGGGGAACACAGAGGGCCAG 3' Chd3 mmu-miR-343 beg:308 end:323 pic:3' AGACCCGTGTACTTCCCTCT 5'& | |. |.|||||| &5' -----GTCCG-GGAGGGAG- 3' Chd3 mmu-miR-346 beg:734 end:756 pic:3' TCTCC-GTCCGTGAGCCCGTCTGT 5'& .|| ||||||. |||||||| &5' --GGGCCAGGCATG-GGGCAGAC- 3' Chd3 mmu-miR-3470a beg:689 end:710 pic:3' GGTCGGACCAGATGTTTCACT 5'& |||||||| |||| .|||| &5' CCAGCCTGTTCTA---GGTGA 3' Chd3 mmu-miR-3470a beg:359 end:380 pic:3' GGTCGGACCAGAT-GTTTCACT 5'& ||| ||| ||. |||||||. &5' CCA-CCTC--CTGCCAAAGTGG 3' Chd3 mmu-miR-3470b beg:689 end:710 pic:3' GGTCGGACCAGATGTCTCACT 5'& |||||||| |||| .|||| &5' CCAGCCTGTTCTA---GGTGA 3' Chd3 mmu-miR-3473 beg:990 end:1006 pic:3' CCGACTCGGT-AGAGAGGT 5'& ||.| ||||||| &5' -----AGTCTTTCTCTCC- 3' Chd3 mmu-miR-3473 beg:111 end:133 pic:3' CCGA--CTCGGTAGAGAGGT 5'& |||| ||||| |.| || &5' GGCTAGGAGCCCTTTTGCC- 3' Chd3 mmu-miR-3473 beg:152 end:173 pic:3' CCGACTC-----GGTAGAGAGGT 5'& ||| |.|||||||. &5' ----GAGGACCCCTATCTCTCT- 3' Chd3 mmu-miR-3474 beg:326 end:342 pic:3' CTTAGGTGCAGAGGAGGGTCCC 5'& | ||||||||| &5' --------GGAGCCTCCCAGG- 3' Chd3 mmu-miR-377 beg:209 end:223 pic:3' TGTTTTCAACGGAAACACACTA 5'& |||. |||||| &5' --------TGCTG--GTGTGA- 3' Chd3 mmu-miR-378 beg:215 end:233 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& | ||| |.|||.|| &5' ---TGTGAAG--AGGTCTAG- 3' Chd3 mmu-miR-412 beg:311 end:332 pic:3' GCCGATCACCTGGTCCACTT 5'& ||| || ||| |||||.| &5' CGGG-AG-GGAGGAGGTGGA 3' Chd3 mmu-miR-412 beg:220 end:236 pic:3' GCCGATCACCTGGTCCACTT 5'& || || |.|||||. &5' -----AGAGGTCTAGGTGG- 3' Chd3 mmu-miR-412 beg:651 end:665 pic:3' GCCGATCACCTGGTCCACTT 5'& ||. .||||| &5' --------GGGTTGGGTGA- 3' Chd3 mmu-miR-423-3p beg:856 end:882 pic:3' TGACTCCCCGGAG--TCTGGCTCGA 5'& ||| |||| .|||||||| &5' -CTGTCTTGCCTGTGGGACCGAGC- 3' Chd3 mmu-miR-423-5p beg:9 end:24 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& || ||||||.||| &5' --------GC---CTGCCCTTCA 3' Chd3 mmu-miR-432 beg:790 end:807 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& || ||| ||.||||. &5' CT-CCCT--------CTTCAAGG 3' Chd3 mmu-miR-450a-3p beg:679 end:696 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& | .||| ||||||. &5' ------GAGGAGC-TCCCCAG- 3' Chd3 mmu-miR-450a-3p beg:286 end:303 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& || ||| |.|||||| &5' -------CACAGC-TTCCCAAT 3' Chd3 mmu-miR-450b-3p beg:290 end:303 pic:3' TACGTACGTTTTACAAGGGTTA 5'& || |||||||| &5' ------GC------TTCCCAAT 3' Chd3 mmu-miR-450b-3p beg:977 end:996 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||| || ||||||.| &5' -TGCC-GCCT----TTCCCAGT 3' Chd3 mmu-miR-455star beg:900 end:920 pic:3' GCTACATC-AGGTTTCCGTGTAT 5'& |. || |.| .||||||| &5' -GGG--AGATTC--GGGCACAT- 3' Chd3 mmu-miR-465a-3p beg:1006 end:1017 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||||.|| &5' --------------TCCTGGTC 3' Chd3 mmu-miR-465b-3p beg:1006 end:1017 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||||.|| &5' --------------TCCTGGTC 3' Chd3 mmu-miR-465c-3p beg:1006 end:1017 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||||.|| &5' --------------TCCTGGTC 3' Chd3 mmu-miR-470star beg:198 end:219 pic:3' AGAAGAGTCTTTCCATGACCAA 5'& ||| ||| ||.||||| &5' -CTTGA-AGACT-GTGCTGGT- 3' Chd3 mmu-miR-483star beg:466 end:488 pic:3' TTCTGCCC-TCCCCTCCTCACT 5'& |.|| ||| |||||.||.| &5' AGGAAGGGAAGGGGGGGGG--- 3' Chd3 mmu-miR-491 beg:78 end:97 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& |||| |||||||| &5' CCTCCACC-----TTCCCCAC- 3' Chd3 mmu-miR-504 beg:233 end:256 pic:3' CTATCTCA--CGTCTGGTCCCAGA 5'& .||| |. |||||||| &5' ---GGAGATGGTTAA-CAGGGTCT 3' Chd3 mmu-miR-532-3p beg:368 end:384 pic:3' ACGTTCGGAACCCACACCCTCC 5'& ||| |||||.| &5' -----GCCAAA---GTGGGGG- 3' Chd3 mmu-miR-541 beg:1009 end:1031 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& || | .|| |||||||| &5' ----TGGTCT--GTCCCAATCCCTT 3' Chd3 mmu-miR-582-3p beg:231 end:252 pic:3' AACCCAAGTCAACAAGTTGTCC 5'& |||| || || |.|||||| &5' -TGGG---AGATGGTTAACAGG 3' Chd3 mmu-miR-592 beg:798 end:817 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& ||| || ||.|||. &5' ---TCAAGGCCTG--GATACAG- 3' Chd3 mmu-miR-615-5p beg:143 end:165 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& ||| || | |||||||. &5' --TCCCTTCAA-GAGGACCCCT 3' Chd3 mmu-miR-668 beg:928 end:951 pic:3' CCATCACCCGGCTCGGCTCACTGT 5'& || || ||||| | |||||.|| &5' GG-AG-GGGCCAGG--GAGTGGCA 3' Chd3 mmu-miR-669a beg:278 end:296 pic:3' TGTACTTGTACGTGTGTGTTGA 5'& || .|.|||||.|| &5' -------CAAATATACACAGCT 3' Chd3 mmu-miR-669l beg:278 end:296 pic:3' TGTATATGTACGTGTGTGTTGA 5'& || .|.|||||.|| &5' -------CAAATATACACAGCT 3' Chd3 mmu-miR-670 beg:825 end:846 pic:3' AAGTGGTGTA-TGTGAGTCCCTA 5'& | | .| .| | .| |||||| &5' -TGAGTAGGTCAGGC-CAGGGA- 3' Chd3 mmu-miR-672 beg:877 end:902 pic:3' AGTG-TGTGTCA--TGTGGTTGGAGT 5'& .| ||||||| |.|.||. || &5' --GCAACACAGTGGATATCAGGCT-- 3' Chd3 mmu-miR-672 beg:272 end:298 pic:3' AGTGTGTGTC--ATGTG-GTTGGAGT 5'& ||| ||| ||.|| ||.|.|| &5' -CAC-CACCAAATATACACAGCTTC- 3' Chd3 mmu-miR-692 beg:412 end:431 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& |||| ||||||||. &5' ---TGAGATCATCAAAGAGG- 3' Chd3 mmu-miR-692 beg:673 end:685 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& || |||||||. &5' ---------GC-CAAAGAGG- 3' Chd3 mmu-miR-698 beg:470 end:488 pic:3' TCCCTTCCTTTGCTCTTAC 5'& |||||||| . |.|. &5' AGGGAAGGGGGGGGGG--- 3' Chd3 mmu-miR-705 beg:981 end:1010 pic:3' ACGGGTGGGGT-------GGAGGGTGG 5'& |||. .|||| .|||||||. &5' -GCCTTTCCCAGTCTTTCTCTCCCACT 3' Chd3 mmu-miR-705 beg:350 end:374 pic:3' ACG-GGTGG-GGTGGAGGGTGG 5'& |. .|||| |||||||| || &5' -GTATCACCTCCACCTCCTGCC 3' Chd3 mmu-miR-705 beg:169 end:197 pic:3' ACGGGTGG-GGTG------GAGGGTGG 5'& .||||| |||| .||||||| &5' --TCCACCTCCACACACCTTTCCCACC 3' Chd3 mmu-miR-741 beg:153 end:172 pic:3' AGATGTATCTTACC-GTAGAGAGT 5'& ||.| .||||||| &5' -------AGGACCCCTATCTCTC- 3' Chd3 mmu-miR-758 beg:429 end:451 pic:3' ATCACC-TGGTCCAGTGTTT 5'& || || ||| ||.||||| &5' -AGGGGAACCTTGTTACAAA 3' Chd3 mmu-miR-758 beg:730 end:747 pic:3' ATCACCTGGTCCAGTGTTT 5'& || ||.||||| || . &5' -AGAGGGCCAGG-CATGG- 3' Chd3 mmu-miR-760 beg:638 end:659 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||||||||| . ||.|..| &5' -CCCCACAGAGTAAGGGTTG 3' Chd3 mmu-miR-760 beg:618 end:640 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& |||||| .|||| || || &5' TCCCCAGGGACCAAGGACC- 3' Chd3 mmu-miR-762 beg:681 end:699 pic:3' CGAGACAGGGCC----GGGGTCGGGG 5'& || ||||||||. &5' ----------GGAGCTCCCCAGCCT- 3' Chd3 mmu-miR-764-5p beg:316 end:338 pic:3' TCCTCCTGTACACTCGT-GG 5'& .|||||| .|| |||| || &5' GGGAGGAGGTG-GAGCCTCC 3' Chd3 mmu-miR-7b beg:986 end:1001 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& || | ||||||.| &5' ---------TC-CCAGTCTTTC- 3' Chd3 mmu-miR-871 beg:814 end:832 pic:3' GTACTGACCGTGATTAGACTTAT 5'& |||| |||.|||.|| &5' ---GACTA-----AATTTGAGTA 3' Chd3 mmu-miR-877star beg:460 end:486 pic:3' ACCCTCCTCC--CTCTTCTCCTGT 5'& ||||||||| |.||||.||. . &5' -GGGAGGAGGAAGGGAAGGGGGGG 3' Chd3 mmu-miR-879 beg:325 end:347 pic:3' CCGAATCTCGATA--TTCGGAGA 5'& ||. .|||| |.||||.| &5' GGT--GGAGCCTCCCAGGCCTTT 3' Chd3 mmu-miR-881star beg:151 end:173 pic:3' TCTACACTGACAATAGAGAGAC 5'& ||| ||| ||||||||| &5' AGAG--GACCCCTATCTCTCT- 3' Chd3 mmu-miR-882 beg:160 end:175 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||| |||||||| &5' ---------CTATCTCTCTCC- 3' Chd3 mmu-miR-882 beg:991 end:1006 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |. .||||||| &5' --------GTCT-TTCTCTCC- 3' Chd3 mmu-miR-9 beg:414 end:430 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |||| |.|||||| &5' ----------AGATCATCAAAGA 3' Chd3 mmu-miR-9 beg:672 end:684 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |.||||||| &5' --------------AGCCAAAGA 3' Chd3 mmu-miR-9 beg:623 end:638 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||. .|||||.|| &5' ----------AGG-GACCAAGGA 3' Chd3 mmu-miR-93 beg:484 end:503 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& . |||||.| ||||||| &5' --GGCTGCATG----GCACTTT- 3' Chd3 mmu-miR-1937b beg:306 end:319 pic:3' ACCCCCGAGCAGGCCCTA 5'& |.|||||||| &5' -------TTGTCCGGGA- 3' Chd3 mmu-miR-1937c beg:309 end:319 pic:3' ACCCCCGAGAAGGCCCTA 5'& ||||||| &5' ----------TCCGGGA- 3' Chd3 mmu-miR-376b beg:402 end:418 pic:3' TTCACCTACAAGGAGATACTA 5'& ||| |.||||||| &5' ----GGAA---CTTCTATGA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chd3 RAID00040757 mmu-miR-1953 miRNA MIMAT0009424 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00085161 mmu-miR-881-5p miRNA MIMAT0004845 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00098516 mmu-miR-323-5p miRNA MIMAT0004638 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00122598 mmu-miR-7235-5p miRNA MIMAT0028438 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00154984 mmu-miR-7683-3p miRNA MIMAT0029887 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00212634 mmu-miR-466k miRNA MIMAT0005845 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00284042 mmu-miR-185-5p miRNA MIMAT0000214 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID00334584 mmu-miR-7027-5p miRNA MIMAT0027958 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00396500 mmu-miR-7005-5p miRNA MIMAT0027914 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00460785 mmu-miR-504-5p miRNA MIMAT0004889 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00496987 mmu-miR-15a-5p miRNA MIMAT0000526 Chd3 mRNA 216848 NGS (Next Generation Sequencing) 0.5483 Chd3 RAID00512390 mmu-miR-6933-5p miRNA MIMAT0027766 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00512771 mmu-miR-7b-5p miRNA MIMAT0000678 Chd3 mRNA 216848 NGS (Next Generation Sequencing)//Prediction 0.6559 Chd3 RAID00530777 mmu-miR-3473a miRNA MIMAT0015645 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00675966 mmu-miR-615-3p miRNA MIMAT0003783 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00679770 mmu-miR-6956-5p miRNA MIMAT0027812 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00751098 mmu-miR-6368 miRNA MIMAT0025112 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00755729 mmu-miR-106a-5p miRNA MIMAT0000385 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00850162 mmu-miR-423-5p miRNA MIMAT0004825 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00852424 mmu-miR-23a-5p miRNA MIMAT0017019 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00873455 mmu-let-7c-1-3p miRNA MIMAT0004622 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00916197 mmu-miR-8108 miRNA MIMAT0031413 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00926063 mmu-miR-1952 miRNA MIMAT0009423 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID00952523 mmu-miR-6903-5p miRNA MIMAT0027706 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01052410 mmu-miR-363-5p miRNA MIMAT0017076 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01077235 mmu-miR-8093 miRNA MIMAT0031394 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01134191 mmu-miR-383-5p miRNA MIMAT0000748 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01191543 mmu-miR-1938 miRNA MIMAT0009402 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01219970 mmu-miR-204-3p miRNA MIMAT0017002 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01222582 mmu-miR-3154 miRNA MIMAT0035714 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01231861 mmu-miR-7056-5p miRNA MIMAT0028016 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01251121 mmu-miR-5617-3p miRNA MIMAT0022362 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01295608 mmu-miR-7218-3p miRNA MIMAT0028405 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01345423 mmu-miR-488-3p miRNA MIMAT0003450 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID01364640 mmu-miR-7210-3p miRNA MIMAT0028389 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01405968 mmu-miR-7047-5p miRNA MIMAT0027998 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01431707 mmu-miR-6916-5p miRNA MIMAT0027732 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01450032 mmu-miR-466d-5p miRNA MIMAT0004930 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01463372 mmu-miR-7652-5p miRNA MIMAT0029810 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01528582 mmu-miR-7011-5p miRNA MIMAT0027926 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01535477 mmu-miR-7003-5p miRNA MIMAT0027910 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID01539559 mmu-miR-6405 miRNA MIMAT0025157 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01539822 mmu-miR-328-3p miRNA MIMAT0000565 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01653443 mmu-miR-92a-2-5p miRNA MIMAT0004635 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01660511 mmu-miR-6931-5p miRNA MIMAT0027762 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01698291 mmu-miR-7076-5p miRNA MIMAT0028058 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01731895 mmu-miR-6975-5p miRNA MIMAT0027852 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01733320 mmu-miR-302d-3p miRNA MIMAT0003377 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01801278 mmu-miR-532-3p miRNA MIMAT0004781 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID01846760 mmu-miR-7240-5p miRNA MIMAT0028448 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01857320 mmu-miR-882 miRNA MIMAT0004847 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID01918741 mmu-miR-590-3p miRNA MIMAT0004896 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01925126 mmu-miR-190a-5p miRNA MIMAT0000220 Chd3 mRNA 216848 NGS (Next Generation Sequencing)//Prediction 0.6308 Chd3 RAID01969098 mmu-miR-3103-5p miRNA MIMAT0014937 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID01974571 mmu-miR-876-5p miRNA MIMAT0004854 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02015979 mmu-miR-874-5p miRNA MIMAT0017268 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02077034 mmu-miR-6967-5p miRNA MIMAT0027836 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02079482 mmu-miR-10b-5p miRNA MIMAT0000208 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02112012 mmu-miR-7010-5p miRNA MIMAT0027924 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02169934 mmu-miR-149-3p miRNA MIMAT0016990 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02171291 mmu-miR-10a-5p miRNA MIMAT0000648 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02237880 mmu-miR-466i-5p miRNA MIMAT0017325 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02275992 mmu-miR-7075-5p miRNA MIMAT0028056 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02285913 mmu-miR-6923-3p miRNA MIMAT0027747 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02310092 mmu-miR-93-5p miRNA MIMAT0000540 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02314013 mmu-miR-6929-5p miRNA MIMAT0027758 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02337144 mmu-miR-320-3p miRNA MIMAT0000666 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02349367 mmu-miR-211-5p miRNA MIMAT0000668 Chd3 mRNA 216848 CLIP-seq 0.5483 Chd3 RAID02367957 mmu-miR-1843b-5p miRNA MIMAT0019345 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02386787 mmu-miR-7016-5p miRNA MIMAT0027936 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02396871 mmu-miR-190b-5p miRNA MIMAT0004852 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02419486 mmu-miR-7684-5p miRNA MIMAT0029890 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02426500 mmu-miR-6961-5p miRNA MIMAT0027822 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02428178 mmu-miR-490-3p miRNA MIMAT0003780 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02432592 mmu-miR-6404 miRNA MIMAT0025156 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02545528 mmu-miR-6982-3p miRNA MIMAT0027867 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02590038 mmu-miR-6922-5p miRNA MIMAT0027744 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02693866 mmu-miR-6961-3p miRNA MIMAT0027823 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02717529 mmu-let-7b-5p miRNA MIMAT0000522 Chd3 mRNA 216848 NGS (Next Generation Sequencing) 0.5483 Chd3 RAID02771853 mmu-miR-6953-5p miRNA MIMAT0027806 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02807143 mmu-miR-7a-5p miRNA MIMAT0000677 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID02824692 mmu-miR-5129-3p miRNA MIMAT0022987 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02831364 mmu-miR-1958 miRNA MIMAT0009431 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02859077 mmu-miR-20a-5p miRNA MIMAT0000529 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02899064 mmu-miR-6966-3p miRNA MIMAT0027835 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02930781 mmu-miR-17-5p miRNA MIMAT0000649 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02937127 mmu-miR-3547-5p miRNA MIMAT0027832 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID02955917 mmu-miR-1668 miRNA MIMAT0031414 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03064609 mmu-miR-202-3p miRNA MIMAT0000235 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03156885 mmu-miR-6921-5p miRNA MIMAT0027742 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID03162965 mmu-miR-6987-5p miRNA MIMAT0027876 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03166419 mmu-miR-6979-5p miRNA MIMAT0027860 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03192161 mmu-miR-3075-3p miRNA MIMAT0014859 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03194865 mmu-miR-7030-5p miRNA MIMAT0027964 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03206230 mmu-miR-376b-3p miRNA MIMAT0001092 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03239627 mmu-miR-136-5p miRNA MIMAT0000148 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03312283 mmu-miR-7007-5p miRNA MIMAT0027918 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03337095 mmu-miR-6952-5p miRNA MIMAT0027804 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03403072 mmu-miR-471-3p miRNA MIMAT0017195 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03412010 mmu-miR-1943-5p miRNA MIMAT0009408 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03421212 mmu-miR-7118-5p miRNA MIMAT0028133 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03505994 mmu-miR-9-5p miRNA MIMAT0000142 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID03676643 mmu-miR-6942-5p miRNA MIMAT0027784 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03751736 mmu-miR-330-5p miRNA MIMAT0004642 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03759209 mmu-miR-504-3p miRNA MIMAT0017277 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03785934 mmu-miR-7058-5p miRNA MIMAT0028020 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03813196 mmu-miR-6965-5p miRNA MIMAT0027830 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03875628 mmu-miR-491-5p miRNA MIMAT0003486 Chd3 mRNA 216848 Prediction 0.2202 Chd3 RAID03895053 mmu-miR-296-3p miRNA MIMAT0004576 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03903944 mmu-miR-7052-5p miRNA MIMAT0028008 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03981379 mmu-miR-665-3p miRNA MIMAT0003733 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID03990288 mmu-miR-142a-3p miRNA MIMAT0000155 Chd3 mRNA 216848 Prediction 0.1828 Chd3 RAID04018769 mmu-miR-204-5p miRNA MIMAT0000237 Chd3 mRNA 216848 CLIP-seq//Prediction 0.6308