DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Gabarap ATTTA 99-452 675-679 Identification of TTP mRNA targets in human dendritic cells#RNA 2008; 14(5): 888-902.!

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004525 mmu-miR-99b* 56486 Gabarap gccugggugucuGU-GCUCGAac || |||||| uaaaaaggaaacCACCGAGCUga 3 11 399 421 [mm9:11:69808425-69808447:+] 0.6982 121 0 -18.72 -0.1949 MIMAT0000217 mmu-miR-188-5p 56486 Gabarap gggagguggUACGUUCCCUAc :|| ||||||| gggggguagGUGGAAGGGAUu 2 13 345 365 [mm9:11:69808371-69808391:+] 0.7149 148 7 -13.49 -0.4597 MIMAT0004573 mmu-miR-293* 56486 Gabarap guuuuACAGUGUGU--CAAACUCa || ||| :| ||||||| ggaccUG-CACUUAAUGUUUGAGg 2 18 106 128 [mm9:11:69808132-69808154:+] 0.6404 146 7 -12.17 -0.5143 MIMAT0004630 mmu-miR-26b* 56486 Gabarap cucggUUCAUUACC-UCU-UGUCc ::||||||| ||| |||| aggagGGGUAAUGGUAGAUACAGc 2 18 152 175 [mm9:11:69808178-69808201:+] 0.6404 132 0 -20.29 -0.6397 MIMAT0004636 mmu-miR-93* 56486 Gabarap gcccuUCACGAUCGAGUCGUCa ||| | |||||||| ucuccAGU-CCCUCUCAGCAGg 2 18 134 154 [mm9:11:69808160-69808180:+] 0.6404 147 7 -15.02 -0.1747 MIMAT0004640 mmu-miR-325 56486 Gabarap aaCUAUCCUCCACG-AGUUAUUu |:||||||| | ||||||| gaGGUAGGAGGCACAUCAAUAAa 2 21 380 402 [mm9:11:69808406-69808428:+] 0.6982 171 7 -24.85 -1.0728 MIMAT0000578 mmu-miR-337-3p 56486 Gabarap uccguaguauaucCUCGACUu ||||||| aaaggaaaccaccGAGCUGAa 2 9 402 422 [mm9:11:69808428-69808448:+] 0.6982 140 7 -14.79 -0.9690 MIMAT0004649 mmu-miR-339-3p 56486 Gabarap gccgagacagcggCUCCGCGAGu | ||||||| ucuacgaagagagGUGGCGCUCc 2 11 31 53 [mm9:11:69808057-69808079:+] 0.5978 142 7 -20.59 -0.6003 MIMAT0000740 mmu-miR-376a 56486 Gabarap ugCACCUAAAAGGAGAUGCUa | ||:|| :||||||| ugGGGGGUUCCAUUCUACGAa 2 20 18 38 [mm9:11:69808044-69808064:+] 0.5551 155 7 -19.92 -0.6040 MIMAT0003170 mmu-miR-541 56486 Gabarap ucacacuggUUGUAG-UCUUAGGGAa ||| | | ||||||| cgggcucagAACCCCAAUAAUCCCUu 2 17 299 324 [mm9:11:69808325-69808350:+] 0.6404 147 7 -15.66 -0.8685 MIMAT0003185 mmu-miR-369-5p 56486 Gabarap cgcuuauauugUGCCAGCUAGa |: ||||||| uagacuucuugAUUGUCGAUCu 2 12 226 247 [mm9:11:69808252-69808273:+] 0.6404 143 7 -13.12 -1.0402 MIMAT0003190 mmu-miR-291b-3p 56486 Gabarap uguuuguuuuaCCU--ACGUGAAa ||| ||||||| uccuuucuucaGGACCUGCACUUa 2 12 95 118 [mm9:11:69808121-69808144:+] 0.6404 142 7 -11.30 -0.7630 MIMAT0003897 mmu-miR-759 56486 Gabarap caguuuuaacAAACGUGAGACg || ||||||| uuacccuccaUUCCCACUCUGa 2 13 202 223 [mm9:11:69808228-69808249:+] 0.6404 144 7 -11.85 -1.0490 MIMAT0003454 mmu-miR-423-3p 56486 Gabarap ugacuccccggagucUGGCUCGa ||||||| aauaaaaaggaaaccACCGAGCu 2 9 397 419 [mm9:11:69808423-69808445:+] 0.6982 140 7 -22.46 -0.5577 MIMAT0005448 mmu-miR-467b 56486 Gabarap guAUAUGUAC-GUCCGUGAAUg | | || | | ||||||| uuUCUUCAGGACCUGCACUUAa 2 20 98 119 [mm9:11:69808124-69808145:+] 0.6404 146 7 -11.06 -1.0544 MIMAT0003485 mmu-miR-455* 56486 Gabarap gcuaCAUCAGGUUUCCGUGUAu | || : ::|||||||| ugggGGAGGUAGGAGGCACAUc 2 19 375 396 [mm9:11:69808401-69808422:+] 0.6982 154 7 -18.93 -0.9076 MIMAT0004848 mmu-miR-883a-5p 56486 Gabarap cauuGACGAUGAAGAGAGUCGu || | :: |||||||| gucuCUCCAGUCCCUCUCAGCa 2 19 131 152 [mm9:11:69808157-69808178:+] 0.6404 150 7 -16.30 -0.3136 MIMAT0004862 mmu-miR-877* 56486 Gabarap acCCUCCUCCCUC--UUCUCC-UGu ||| |:||||| |:|||| || uuGGAUGGGGGAGGUAGGAGGCACa 2 21 370 394 [mm9:11:69808396-69808420:+] 0.6982 123 0 -28.54 -0.1246 MIMAT0007878 mmu-miR-1894-3p 56486 Gabarap gaggGAAGUGGGAGA-GGGAACg | || |::||| |||||| cauaCAUCUCUUUCUCCCCUUGu 2 19 179 201 [mm9:11:69808205-69808227:+] 0.6404 130 6 -22.84 -1.0959 MIMAT0009405 mmu-miR-1941-5p 56486 Gabarap uuCGGAGACAUG--GUCGUAGAGGGa ||||| ||| | : |||||| caGCCUCCAUACAUCUCUUUCUCCCc 2 23 172 197 [mm9:11:69808198-69808223:+] 0.6404 129 6 -23.27 -0.1269 MIMAT0009435 mmu-miR-1962 56486 Gabarap uacacaggGUCACGGUCGGAGa :|| ||||||| gguaauggUAGAUACAGCCUCc 2 15 158 179 [mm9:11:69808184-69808205:+] 0.6404 142 7 -17.11 -0.8914 MIMAT0009445 mmu-miR-1274a 56486 Gabarap accgcggacuuGUCCCUGGACu || ||||||| ccuccuuucuuCA-GGACCUGc 2 12 93 113 [mm9:11:69808119-69808139:+] 0.6404 141 7 -18.00 -0.8111 MIMAT0011217 mmu-miR-2141 56486 Gabarap uugaaaagacuGUGGAGGa ||||||| ggcucaaacacCACCUCCu 2 9 80 98 [mm9:11:69808106-69808124:+] 0.6404 140 7 -15.33 -0.7790 MIMAT0011222 mmu-miR-2146 56486 Gabarap guGUACCUUG-GGAAGAGGug ||| | | |:|||||| ucCAUACAUCUCUUUCUCCcc 3 19 177 197 [mm9:11:69808203-69808223:+] 0.6404 133 0 -18.23 -0.1029 MIMAT0015644 mmu-miR-1186b 56486 Gabarap caccaCGUACGGAAAUUAGGGu | | || ||||||| gcucaGAACCCCAAUAAUCCCu 2 18 302 323 [mm9:11:69808328-69808349:+] 0.6404 145 7 -11.23 -0.9395 MIMAT0015645 mmu-miR-3473 56486 Gabarap ccGACU-CGGUAGAGAGGu :||| ||::||||||| guUUGAGGCUGUCUCUCCa 2 17 121 139 [mm9:11:69808147-69808165:+] 0.6404 159 7 -23.41 -0.5674 MIMAT0015646 mmu-miR-3474 56486 Gabarap cuUAGGUGCAGAGGAGG--GUCCc ||||| || |||||| |||| acAUCCA-GU-UCCUCCUUCAGGc 2 21 61 82 [mm9:11:69808087-69808108:+] 0.6404 120 0 -23.58 -0.5662 MIMAT0000128 mmu-miR-30a 56486 Gabarap gaaggucagcuccuACAAAUGu ||||||| ucucuuucuccccuUGUUUACc 2 9 185 206 [mm9:11:69808211-69808232:+] 0.6404 140 7 -9.63 -0.6707 MIMAT0000130 mmu-miR-30b 56486 Gabarap ucgacucacauccuACAAAUGu ||||||| ucucuuucuccccuUGUUUACc 2 9 185 206 [mm9:11:69808211-69808232:+] 0.6404 140 7 -5.18 -0.6707 MIMAT0000158 mmu-miR-146a 56486 Gabarap uuGGGUACCUUAAGUCAA-GAGu :|| || || ||||| ||| cuUCCUUGACAUCCAGUUCCUCc 2 21 53 75 [mm9:11:69808079-69808101:+] 0.6404 128 0 -12.61 -0.7932 MIMAT0000214 mmu-miR-185 56486 Gabarap aguccuugaCGGAAAGAGAGGu | || ||||||| aauguuugaGGCUGUCUCUCCa 2 14 118 139 [mm9:11:69808144-69808165:+] 0.6404 149 7 -18.14 -0.5783 MIMAT0000248 mmu-miR-30e 56486 Gabarap gaaggucaguuccuACAAAUGu ||||||| ucucuuucuccccuUGUUUACc 2 9 185 206 [mm9:11:69808211-69808232:+] 0.6404 140 7 -9.63 -0.6707 MIMAT0000366 mmu-miR-290-5p 56486 Gabarap uuucACGGGGGUAUCAAACUCa ||| |::| ||||||| gaccUGCACUUAAUGUUUGAGg 2 19 107 128 [mm9:11:69808133-69808154:+] 0.6404 158 7 -13.77 -0.5108 MIMAT0000369 mmu-miR-292-5p 56486 Gabarap guuuucuCGGGGGU--CAAACUCa || |::| ||||||| aggaccuGCACUUAAUGUUUGAGg 2 16 105 128 [mm9:11:69808131-69808154:+] 0.6404 146 7 -14.52 -0.5178 MIMAT0000514 mmu-miR-30c 56486 Gabarap cgacucucacauccuACAAAUGu ||||||| aucucuuucuccccuUGUUUACc 2 9 184 206 [mm9:11:69808210-69808232:+] 0.6404 140 7 -4.97 -0.6707 MIMAT0000515 mmu-miR-30d 56486 Gabarap gaaggucagccccuACAAAUGu ||||||| ucucuuucuccccuUGUUUACc 2 9 185 206 [mm9:11:69808211-69808232:+] 0.6404 140 7 -9.63 -0.6707 MIMAT0004745 mmu-miR-384-5p 56486 Gabarap uguaacggauccuuAACAAAUGu |||||||| aucucuuucuccccUUGUUUACc 2 10 184 206 [mm9:11:69808210-69808232:+] 0.6404 145 7 -7.12 -0.6707 MIMAT0001095 mmu-miR-370 56486 Gabarap ugGUCCAAGGUGGGGUCGUCCg ||| ||| :|:||||||| ucCAG--UCCCUCUCAGCAGGa 2 21 136 155 [mm9:11:69808162-69808181:+] 0.6404 161 7 -30.52 -0.4990 MIMAT0003128 mmu-miR-485 56486 Gabarap cuuaaguagugccgGUCGGAGa ||||||| gguaaugguagauaCAGCCUCc 2 9 158 179 [mm9:11:69808184-69808205:+] 0.6404 140 7 -16.48 -0.8981 MIMAT0003172 mmu-miR-542-3p 56486 Gabarap aaAGUCAAUAGUU--AGACAGUGu |:: ||:||:| |||||||| ucUUGAUUGUCGAUCUCUGUCACa 2 21 232 255 [mm9:11:69808258-69808281:+] 0.6404 163 7 -20.25 -1.1618 MIMAT0003450 mmu-miR-488 56486 Gabarap cuGGUUCUU--UGUCGGAAAGUu |||| || | ||||||| ccCCAAUAAUCCCUUCCUUUCAc 2 20 310 332 [mm9:11:69808336-69808358:+] 0.6860 150 7 -11.41 -1.1660 MIMAT0003475 mmu-miR-146b 56486 Gabarap ucGGAUACCUUAAGUCAA-GAGu ||| || || ||||| ||| uuCCU-UGACAUCCAGUUCCUCc 2 21 54 75 [mm9:11:69808080-69808101:+] 0.6404 126 0 -13.09 -0.7932 MIMAT0004847 mmu-miR-882 56486 Gabarap ugAUUACGCGAU-UG--AGAGAGGa |||||: : | :| ||||||| cuUAAUGUUUGAGGCUGUCUCUCCa 2 21 115 139 [mm9:11:69808141-69808165:+] 0.6404 150 7 -18.13 -0.5747

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G053539 Gabarap Mus musculus 56486 23804767 -28 -23 R61823; MOUSE$GABARAP_01; Binding factors: CHOP-10:C/EBPbeta

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Gabarap mmu-miR-188-5p beg:351 end:365 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& .|| ||||||| &5' ---------GTGGAAGGGAT- 3' Gabarap mmu-miR-759 beg:213 end:223 pic:3' CAGTTTTAACAAACGTGAGACG 5'& ||||||| &5' --------------CACTCTG- 3' Gabarap mmu-miR-485 beg:161 end:179 pic:3' CTTAAGTAGTGCCG-----GTCGGAGA 5'& |.||. ||||||| &5' ---------ATGGTAGATACAGCCTC- 3' Gabarap mmu-miR-1962 beg:163 end:179 pic:3' TACACAGGGTCACGGTCGGAGA 5'& .|| ||||||| &5' --------TAGATACAGCCTC- 3' Gabarap mcmv-miR-m88-1 beg:224 end:251 pic:3' TCTGGGG--CT-GTAGCTGAAGAC 5'& ||||..| || ..|||| |||| &5' AGACTTCTTGATTGTCGATCTCTG 3' Gabarap mmu-miR-337-3p beg:412 end:421 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||||||| &5' -------------GAGCTGA- 3' Gabarap mmu-miR-455star beg:377 end:396 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& || |||| .|||||||| &5' -GAGGTAG----GAGGCACAT- 3' Gabarap mmu-miR-369-5p beg:232 end:248 pic:3' CGCTTATATTGTGCCAGCTAGA 5'& |.|. |||||||| &5' -------TGATT--GTCGATCT 3' Gabarap mmu-miR-292-5p beg:109 end:128 pic:3' GTTTTCTCG-GGGGT-CAAACTCA 5'& || |.. ||||||| &5' -------GCACTTAATGTTTGAG- 3' Gabarap mmu-miR-293star beg:109 end:128 pic:3' GTTTTACAGTGTGT----CAAACTCA 5'& .||| ||||||| &5' ---------GCACTTAATGTTTGAG- 3' Gabarap mcmv-miR-m108-1 beg:290 end:310 pic:3' GCTGTGCTC-GGTGGC---AGTCTTT 5'& | |||.|| |||||| &5' --------GCCCATCGGGCTCAGAA- 3' Gabarap mcmv-miR-m22-1 beg:369 end:382 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& |||.||||.| &5' ------------GGATGGGGGA 3' Gabarap mcmv-miR-m88-1 beg:214 end:235 pic:3' TCTGGGGCTGTAGCTGAAGAC 5'& ||.|.||. ||||||| &5' --ACTCTGATTTAGACTTCT- 3' Gabarap mghv-miR-M1-2 beg:369 end:392 pic:3' TTTCT-CCCCCTC--TCCCCCAGAC 5'& .|| ||||||| ||| || | &5' --GGATGGGGGAGGTAGGAGG-C-- 3' Gabarap mmu-miR-1186b beg:309 end:323 pic:3' CACCACGTACGGAAATTAGGGT 5'& || ||||||| &5' ----------CCAATAATCCC- 3' Gabarap mmu-miR-1196 beg:373 end:391 pic:3' TCCGTCTCCGTCCATCTAAA 5'& || .||||.||| ||. &5' -GGGGGAGGTAGG-AGG--- 3' Gabarap mmu-miR-1199 beg:288 end:309 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& |.|| | |.|||| |||||| &5' CTGC-CCATCGGG-CTCAGA 3' Gabarap mmu-miR-1274a beg:93 end:112 pic:3' ACCGCGGACTT--GTCCCTGGACT 5'& ||| || ||||||| &5' -----CCTTTCTTCA-GGACCTG- 3' Gabarap mmu-miR-142-3p beg:392 end:414 pic:3' AGGTATTTCATCCTTT-GTGATGT 5'& || ||||| |||||| ||| &5' TCAATAAAA-AGGAAACCAC---- 3' Gabarap mmu-miR-1894-3p beg:321 end:343 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||.|||||. |||.|.|| &5' -TCCTTTCACTATCTTCTTT-- 3' Gabarap mmu-miR-1957 beg:237 end:255 pic:3' CAGTATACGAGATGGTGAC 5'& |||. || |||| ||| &5' GTCG-AT-CTCTGTCAC-- 3' Gabarap mmu-miR-1982star beg:130 end:151 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |||.|||| |||||.||. &5' -CTCTCCAGT-CCCTCTCAG 3' Gabarap mmu-miR-199a-5p beg:356 end:374 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& ||| .|| |||.||| &5' ----AGGGA--TTG-ACATTGG- 3' Gabarap mmu-miR-199bstar beg:353 end:374 pic:3' CTTGTCCATCAGAT-TTGTGACCC 5'& || || .|||.||| &5' -----GGAAGGGATTGACATTGG- 3' Gabarap mmu-miR-2140 beg:97 end:118 pic:3' TGGTGGTTCTAGACGTGGA 5'& .| .||.|| ||||||.| &5' -TCTTCAGGACCTGCACTT 3' Gabarap mmu-miR-2141 beg:77 end:99 pic:3' TTGAAAAGACTGTGGAGGA 5'& ..|| |||||||| &5' GGCTCAAACACCACCTCCT 3' Gabarap mmu-miR-2146 beg:121 end:140 pic:3' GTGTACCTTGGGA-AGAGGTG 5'& || .|. | |||||| &5' ----TGAGGCTGTCTCTCCA- 3' Gabarap mmu-miR-218 beg:374 end:395 pic:3' TGTACCAATCTAG--TTCGTGTT 5'& || ||.| |.||||| &5' ----GGGGAGGTAGGAGGCACA- 3' Gabarap mmu-miR-2861 beg:65 end:85 pic:3' GGC-GGGCGGCGGTCCGGGG 5'& | .|| || .|||||.| &5' --GTTCCTCCTTCAGGCTC- 3' Gabarap mmu-miR-290-5p beg:108 end:128 pic:3' TTTCACGGGGGTATCAAACTCA 5'& ||| |..| ||||||| &5' ----TGCACTTAATGTTTGAG- 3' Gabarap mmu-miR-291b-3p beg:103 end:118 pic:3' TGTTTGTTTTACCT--ACGTGAAA 5'& ||| ||||||| &5' -----------GGACCTGCACTT- 3' Gabarap mmu-miR-302a beg:97 end:119 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& || .||..|| ||||||| &5' TCTTCAGGACCT----GCACTTA 3' Gabarap mmu-miR-302b beg:103 end:119 pic:3' GATGATTTTGTACCTT--CGTGAAT 5'& ||| ||||||| &5' ------------GGACCTGCACTTA 3' Gabarap mmu-miR-302d beg:96 end:119 pic:3' TGTGAGTTTGTACCTT--CGTGAAT 5'& .|| || ||| ||||||| &5' ---TTCTT-CA-GGACCTGCACTTA 3' Gabarap mmu-miR-3072star beg:90 end:112 pic:3' GGACGGGAGGGAGCCCCAGGGA 5'& ||| ||.|.|.|| || ||| &5' CCT-CCTTTCTTCAGGA--CCT 3' Gabarap mmu-miR-3099 beg:173 end:199 pic:3' AGGGGT---TGGAGAGAGATCGGAT 5'& |.||| |.||||.||| ||| &5' -CTCCATACATCTCTTTCTCCCCT- 3' Gabarap mmu-miR-330star beg:242 end:272 pic:3' AGAGAC-GTCCGGGAC----ACGAAACG 5'& |||||| || .|| ||.|||| &5' TCTCTGTCACATCCGATGATTGTTTTG- 3' Gabarap mmu-miR-3473 beg:120 end:140 pic:3' CCGACT-CGGTAGAGAGGT 5'& .||| ||..|||||||| &5' --TTGAGGCTGTCTCTCCA 3' Gabarap mmu-miR-3473 beg:180 end:192 pic:3' CCGACTCGGTAGAGAGGT 5'& |||||||.. &5' --------CATCTCTTT- 3' Gabarap mmu-miR-3475 beg:119 end:141 pic:3' AAGTTTGGTACACGGAGGTCT 5'& || |. | ||| .|||||| &5' TTTGAGGC-TGTCTCTCCAG- 3' Gabarap mmu-miR-370 beg:134 end:155 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& |||| ||| .|.||||||| &5' -CCAG--TCCCTCTCAGCAGG- 3' Gabarap mmu-miR-374star beg:155 end:177 pic:3' GAGCCTGTTACTA-TTATGTTGG 5'& || ||||.| .|||||.|| &5' ---GGGTAATGGTAGATACAGCC 3' Gabarap mmu-miR-432 beg:87 end:109 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& |||| ||.||.|| &5' ----CCACCTCCTTTCTTCAGGA 3' Gabarap mmu-miR-465a-3p beg:216 end:240 pic:3' AGA-TGAATCTTTCCGGGACTAG 5'& ||| |.||||| .|.||||. &5' TCTGATTTAGACT--TCTTGATT 3' Gabarap mmu-miR-465b-3p beg:216 end:240 pic:3' AGA-TGAATCTTTCCGGGACTAG 5'& ||| |.||||| .|.||||. &5' TCTGATTTAGACT--TCTTGATT 3' Gabarap mmu-miR-465c-3p beg:216 end:240 pic:3' AGA-TGAATCTTTCCGGGACTAG 5'& ||| |.||||| .|.||||. &5' TCTGATTTAGACT--TCTTGATT 3' Gabarap mmu-miR-483star beg:369 end:390 pic:3' TTCTGCCCTC-CCCTCCTCACT 5'& .||.|||.| || ||||| &5' -GGATGGGGGAGGTAGGAG--- 3' Gabarap mmu-miR-541 beg:55 end:74 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& . ||||| |.|.||| &5' -------TTGACATCC-AGTTCCT- 3' Gabarap mmu-miR-542-3p beg:235 end:256 pic:3' AAAGTCAATAGTT--AGACAGTGT 5'& ||.||.| ||||||||| &5' ------TTGTCGATCTCTGTCACA 3' Gabarap mmu-miR-582-3p beg:144 end:155 pic:3' AACCCAAGTCAACAAGTTGTCC 5'& |||.|||| &5' --------------TCAGCAGG 3' Gabarap mmu-miR-741 beg:173 end:191 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& || |||| |||||||. &5' -CTCCATA------CATCTCTT- 3' Gabarap mmu-miR-882 beg:125 end:139 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |||. ||||||| &5' --------GCTG--TCTCTCC- 3' Gabarap mmu-miR-882 beg:185 end:196 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||.||||| &5' -------------CTTTCTCC- 3' Gabarap mmu-miR-883a-5p beg:141 end:153 pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||||||||| &5' -------------CTCTCAGCA 3' Gabarap mmu-miR-325 beg:383 end:403 pic:3' AACTATCCTCCACG-AGTTATTT 5'& ||||||| |||||||| &5' ----TAGGAGGCACATCAATAAA 3' Gabarap mmu-miR-376a beg:19 end:38 pic:3' TGCACCTAAAAGG--AGATGCTA 5'& ||. |||| ||||||| &5' ----GGGGGTTCCATTCTACGA- 3' Gabarap mmu-miR-185 beg:122 end:140 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& | .|||. ||||||| &5' ---GAGGCTGT----CTCTCCA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Gabarap mmu-let-7i 79 98 UGUCGUGUUUGAUGAUGGAGU :|| ||||| || ||||| -AGGCUCAAAC-ACCACCUCC Gabarap mmu-miR-106a 107 134 AUGGACGUG----ACAA---UCGUGAAAC |||||||| |||| :|| | GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap mmu-miR-122a 33 55 -UGUUUGUGGUAACAGUGUGAGGU ||:|| | || :|:|||| UACGAAGAGAG--GUGGCGCUCCU Gabarap mmu-miR-129-3p 338 364 UACGAAAAACCCCA--------UUCCCGAA |||||||||| ||||| --UCUUUUUGGGGGGUAGGUGGAAGGGA-- Gabarap mmu-miR-130b 94 118 UACGGGAAAGUAGUA----ACGUGAC :|||||| ||| |||||| --CUCCUUUCUUCAGGACCUGCACUU Gabarap mmu-miR-134 229 257 -GGGGAGAC--CAGUUGGU--CAGUGU- |::||: |||:|:| |||||| ACUUCUUGAUUGUCGAUCUCUGUCACAU Gabarap mmu-miR-150 352 383 GUGACCAUGUUCCCA-----------ACCCUCU- |||: ||||| ||||:|| ---AGGUGGAAGGGAUUGACAUUGGAUGGGGGAG Gabarap mmu-miR-17-3p 138 155 AUGUUCACGGGAGUGACGUCA ||| ||||| | |||| ---CAGU-CCCUCUCAGCAGG Gabarap mmu-miR-17-5p 107 134 UGAUGGACGUG----ACA---UUCGUGAAAC |||||||| ||| |:|| | --GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap mmu-miR-184 54 81 UGGGAAUA----GUCAA-GAGGCAGGU- :||||: ||||| |||| |:|| UUCCUUGACAUCCAGUUCCUCC-UUCAG Gabarap mmu-miR-185 105 141 -CUU-GACG-GAA--------------AGAGAGGU- |:| |||| ||| |||||||| AGGACCUGCACUUAAUGUUUGAGGCUGUCUCUCCAG Gabarap mmu-miR-188 141 162 UGGGAG-GUGGUACGUUCCCUAC ||||| || || :||||:| UCCCUCUCAGCAG--GAGGGGUA Gabarap mmu-miR-196b 394 416 -GGUUGUUG-UCCUUUGAUGGAU :|||:|| ||||||| ||| AUCAAUAAAAAGGAAACCACCG- Gabarap mmu-miR-199a 347 375 -CUUGUCCAUCAGA-CU---UGUGACCC | :||||:| || |||:||| GGGGUAGGUGGAAGGGAUUGACAUUGGA Gabarap mmu-miR-199b 347 375 -CUUGUCCAUCAGAU----UUGUGACCC | :||||:| :|||:||| GGGGUAGGUGGAAGGGAUUGACAUUGGA Gabarap mmu-miR-204 350 383 -GUCCGUA--UCCU-ACUGUU-----UCCCUU- :|||:: :||| ||||| :|||:| GUAGGUGGAAGGGAUUGACAUUGGAUGGGGGAG Gabarap mmu-miR-206 46 69 GGUGUGU-GAAGGAA-UGUAAGGU- :|:| ||||||| |||| ||| -GGCGCUCCUUCCUUGACAU-CCAG Gabarap mmu-miR-207 358 393 CUCCCU-------------CCUCUCGGUCCUCUUCG- ||||| ||:||| :||||| || AAGGGAUUGACAUUGGAUGGGGGAGGUAGGAG--GCA Gabarap mmu-miR-20a 107 134 GAUGGACGUGAUA-------UUCGUGAAAU ||||||||| |:|| | -GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap mmu-miR-20b 107 134 AUGGACGUGAU------ACU-CGUGAAAC ||||||||| ||| || | GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap mmu-miR-211 351 383 -UCCG--UUUCCU-ACUGUU-----UCCCUU- |||: ||:||| ||||| :|||:| UAGGUGGAAGGGAUUGACAUUGGAUGGGGGAG Gabarap mmu-miR-218 373 396 UGUACCAA-UCUAG--UUCGUGUU |||| ||:| |:||||| -GAUGGGGGAGGUAGGAGGCACAU Gabarap mmu-miR-223 346 371 -CCCCAUAAACUG--UUUGACUGU- |||||| ||: ::|:||||| GGGGGUAGGUGGAAGGGAUUGACAU Gabarap mmu-miR-24 2 20 GACAAGGACGACUU-GACUCGGU |||||| ||||| : -----GCUGCUGUACCUGAGGUG Gabarap mmu-miR-24* 372 395 UGACUAUAGUCGA-GUCAUCCGUG- |||: :| :|| |||||| --GGAUGGGGGAGGUAGGAGGCACA Gabarap mmu-miR-28 34 57 GAGUUA-UCUGACACU-CGAGGAA- |:| ||| |||: ||||||| -ACGAAGAGAG-GUGGCGCUCCUUC Gabarap mmu-miR-292-3p 27 53 UGUGAG---UUUUGGACCGCCGUGAA ||:|| :||: ||:|||:|| CCAUUCUACGAAGAGAGGUGGCGCUC Gabarap mmu-miR-292-5p 104 129 GUUUUCUCGGGGGU------CAAACUCA |:|| ||: || ||||||| --CAGGA-CCUGCACUUAAUGUUUGAGG Gabarap mmu-miR-296 359 386 UGUCCUAACU--------CCCCC-CCGGGA :||||||| ||||| ||: -AGGGAUUGACAUUGGAUGGGGGAGGUA-- Gabarap mmu-miR-300 35 66 -CUUCUCUCGAACG-------GGAAC-GUAU |||||||| | || ||||| ||| CGAAGAGAGGUGGCGCUCCUUCCUUGACAUC Gabarap mmu-miR-324-3p 2 25 GGUCGUCGUGGACCCCGUCACC- | || |:||||| ||::| || GCUGCUGUACCUGAGGUGGGGGG Gabarap mmu-miR-337 385 423 -UUUCCGU--AGUAUA---UCCU---------CGACUU ::||||| ||| |||| ||||| AGGAGGCACAUCAAUAAAAAGGAAACCACCGAGCUGAA Gabarap mmu-miR-340 1 23 CCGAUAUUUCAUUGACUCUGCCU- |||: ||| |||||::||: AGCUGCU--GUACCUGAGGUGGGG Gabarap mmu-miR-351 77 109 -GUCCGAGUUUCCC---GAGG-----AGUCCCU |||||||||| |||| ||||| UCAGGCUCAAACACCACCUCCUUUCUUCAGGA- Gabarap mmu-miR-369-5p 234 249 GCUUAUAUUGUGCCAGCUAGA- |:|: |||||||| -----UUGAUU--GUCGAUCUC Gabarap mmu-miR-374-3p 156 178 GAGCCUGUUACUA-UUAUGUUGG- ||::||||:| :|||||:|| --GGGGUAAUGGUAGAUACAGCCU Gabarap mmu-miR-376a 16 39 UGCACCUAA-AAGG--AGAUGCUA ||||: |||| ||||||| -GGUGGGGGGUUCCAUUCUACGAA Gabarap mmu-miR-376b 13 39 -UUUCACCUA-CAAGG--AGAUACUA :|:||||: ||||| |||| || UGAGGUGGGGGGUUCCAUUCUACGAA Gabarap mmu-miR-378 366 391 -UGUGUCCUGGA-CCUCAGUCCUC- |||: |||: |||| :||||| GACAUUGGAUGGGGGAGGUAGGAGG Gabarap mmu-miR-412 1 24 UGCCGAUCACCUGG--UCCACUUCA |||: || ||| ||||| | --AGCUGCUGUACCUGAGGUGGGGG Gabarap mmu-miR-434-5p 223 249 CCAAGUUUGGU--ACU--CAGCUCGA- ||:|:||: ||| ||||| || -AUUUAGACUUCUUGAUUGUCGAUCUC Gabarap mmu-miR-451 145 168 UUGAGUCAUUA---CCAUUGCCAAA ||||| |: |||||:||| -UCUCAGCAGGAGGGGUAAUGGUA- Gabarap mmu-miR-455-5p 372 397 GCUACA---UCAGGUUUCCGUGUAU |||| || ::|||||||| GGAUGGGGGAGGUAGGAGGCACAUC Gabarap mmu-miR-465-3p 30 63 -AGAUGAAUCUUUCC-----------GGGACUAG ||||| |||:||| ||:||| UUCUACGAAGAGAGGUGGCGCUCCUUCCUUGAC- Gabarap mmu-miR-469 352 387 -CCUGUGGUUCUAG-------UUACUUUCUCCGU- || : ::|||: :||| :||||:| AGGUGGAAGGGAUUGACAUUGGAUGGGGGAGGUAG Gabarap mmu-miR-471 16 38 ACACUUUUCGUGAUAUGAUGCAU ||| ::|: ||||| GGUGGGGGGUUCCAUUCUACGA- Gabarap mmu-miR-483 366 391 -UGU--UCUGCCCUC-CCCUCCUCACU ||| :||:|||:| || ||||| GACAUUGGAUGGGGGAGGUAGGAGG-- Gabarap mmu-miR-485-5p 152 180 -CUUAAGUAGUGCCG-----GUCGGAGA |:| |:||: ||||||| AGGAGGGGUAAUGGUAGAUACAGCCUCC Gabarap mmu-miR-495 104 127 -UUCUUCACGUGG--UACAAACAAA |:|| |||||: ||||||| CAGGACCUGCACUUAAUGUUUGA-- Gabarap mmu-miR-541 291 326 ACACUGGU----UGUAGUCU---------UAGGGAA- || ||| :| ||||| ||||||| -CUGCCCAUCGGGC-UCAGAACCCCAAUAAUCCCUUC Gabarap mmu-miR-542-3p 223 257 AAAGUC---------AAUAGUU--AGACAGUGU- ||:|| ||:||:| ||||||||| AUUUAGACUUCUUGAUUGUCGAUCUCUGUCACAU Gabarap mmu-miR-667 342 358 GAACCCGACCCACCGUCCACAGU :|||| ||:||||| -----UUUGGGGGGUAGGUGG-- Gabarap mmu-miR-672 77 98 -GUGUGUGUCAUGUGGUUGGAGU || :| || ||||| ||||| UCAGGCUCAA-ACACC-ACCUCC Gabarap mmu-miR-681 126 162 -UCGACGGAC-GGUCG--------------CUCCGAC :||||:|| ||||: |:||: AGGCUGUCUCUCCAGUCCCUCUCAGCAGGAGGGGUA- Gabarap mmu-miR-683 124 156 -CUCCU---GU---GUCGAAU---GUCGUCC- |||| | |||: ||||||| UGAGGCUGUCUCUCCAGUCCCUCUCAGCAGGA Gabarap mmu-miR-691 93 110 AAAAGACGGAGAGAAGUCCUUA || |||:||||||||| ---CCU-CCUUUCUUCAGGAC- Gabarap mmu-miR-692 15 44 CUCACUCCGCGAG--------UUUCUCUA :|||:|| |:|| :|||||| AGGUGGGGGGUUCCAUUCUACGAAGAGAG Gabarap mmu-miR-697 93 134 AGAGGU-----GUCCUGG---------------UCCUACAA |||| ||||||| ||| ||| CCUCCUUUCUUCAGGACCUGCACUUAAUGUUUGAGGCUGUC Gabarap mmu-miR-702 15 52 CUCGCCCCA--------------UUUC-CCACC-CGU :|:|||| |:|| ||||| || AGGUGGGGGGUUCCAUUCUACGAAGAGAGGUGGCGCU Gabarap mmu-miR-705 80 112 ACGGGUGG--GGUGGAGGG---------UGG- ||:|| ||||||||: ||| GGCUCAAACACCACCUCCUUUCUUCAGGACCU Gabarap mmu-miR-710 81 114 -GAGUU----------GAGAGGGGUUCUGAACC ||||| ||:||::||:||| || GCUCAAACACCACCUCCUUUCUUCAGGACCUGC Gabarap mmu-miR-721 92 118 AAGGGGGAAAA-----UUA-ACGUGAC ||:||||| :| |||||| -ACCUCCUUUCUUCAGGACCUGCACUU Gabarap mmu-miR-744 127 154 -CGACAAUCGGGAUCGGGG-----CGU- ||||| :|| ||:||| ||| GGCUGUCUCUCC-AGUCCCUCUCAGCAG Gabarap mmu-miR-762 128 146 CGAGACAGGGCCGGGGUCGGGG- |||||: |:||||:||| --GCUGUCU---CUCCAGUCCCU Gabarap mmu-miR-763 127 156 CGGUGACCAAGA--------AGGGUCGACC- :||| ||| ||:|||| || --GGCUGUCUCUCCAGUCCCUCUCAGCAGGA Gabarap mmu-miR-764-3p 22 56 UGUCAACGGUGA------------UACCG-GAGGA- :||| |||:| :|||| ||||| -GGGUU-CCAUUCUACGAAGAGAGGUGGCGCUCCUU Gabarap mmu-miR-770-3p 64 87 -GGUCGAGGU-GCAGUCCGGGUGC ||||:||| | ||||||:|| UCCAGUUCCUCCUUCAGGCUCAA- Gabarap mmu-miR-93 107 134 GAUGGACGUGCUUG-------UCGUGAAAC |||||||| | :|| | -GACCUGCACUUAAUGUUUGAGGCUGUC-- Gabarap mmu-miR-185 132 139 ----------CUUGACG-GAA--------------AGAGAGGU || |||| ||| |||||||| CUUUCUUCAGGACCUGCACUUAAUGUUUGAGGCUGUCUCUCCAG Gabarap mmu-miR-292-5p 121 128 GUUU---------------UCUCGGGGGU------CAAACUCA || ||: || ||||||| AACACCACCUCCUUUCUUCAGGACCUGCACUUAAUGUUUGAGG Gabarap mmu-miR-369-5p 240 247 GCUUAU------------------------AUUGUGCCAGCUAGA |:|: |||||||| CCCUCCAUUCCCACUCUGAUUUAGACUUCUUGAUU--GUCGAUCUC Gabarap mmu-miR-370 148 155 UU----------------------GGUCCAAGGUGGGGUCGUCCG |||| ||| :|:||||||| CACUUAAUGUUUGAGGCUGUCUCUCCAG--UCCCUCUCAGCAGGA Gabarap mmu-miR-423 412 419 GAC-----UCC-CCGG--AGUC-------------UGGCUCGA ||| ||| ||| |||||||| GGGGAGGUAGGAGGCACAUCAAUAAAAAGGAAACCACCGAGCUG Gabarap mmu-miR-455-5p 389 396 G------------------CUACA---UCAGGUUUCCGUGUAU |||| || ::|||||||| GUGGAAGGGAUUGACAUUGGAUGGGGGAGGUAGGAGGCACAUC Gabarap mmu-miR-485-5p 172 179 ----------------CUUAAGUAGUGCCG-----GUCGGAGA |:| |:||: ||||||| CCAGUCCCUCUCAGCAGGAGGGGUAAUGGUAGAUACAGCCUCC Gabarap mmu-miR-541 317 324 ACAC-------UGGUUGUAGUC---------------UUAGGGAA :|| ||||:| |||||||| CCUUUCUAACUGCC--CAUCGGGCUCAGAACCCCAAUAAUCCCUUC Gabarap mmu-miR-542-3p 248 255 A-----------------AAGU-C-AAUAGUU--AGACAGUGU ||| | ||:||:| ||||||||| UCCCACUCUGAUUUAGACUUCUUGAUUGUCGAUCUCUGUCACAU Gabarap mmu-let-7i 77 97 uGU-CGUGUUUGAUGAUGGAGu || || ||||| || ||||| tCAGGCTCAAAC-ACCACCTCc Gabarap mmu-miR-106a 91 119 aUGGACGUGACAA----U---CGUGAAac |||| | :| || | |||||| cACCTCCTTTCTTCAGGACCTGCACTTaa Gabarap mmu-miR-122a 34 54 UGUUUGUGGUAACAGUGUGAGGu ||:|| | : || :|:|||| ACGAAGA--GAGGTGGCGCTCCt Gabarap mmu-miR-129-3p 336 365 uACGAAAAACC------CCA--UUCCCGAA | |||||||| ||| ||||| || cTTCTTTTTGGGGGGTAGGTGGAAGGGATT Gabarap mmu-miR-130b 92 117 uacgGGAAAGUAGU----AACGUGAc |||||| ||| |||||| acctCCTTTCTTCAGGACCTGCACTt Gabarap mmu-miR-134 230 255 GGGGAG--ACCAGUU--GGUCAGUGU |::||: | |||:| :| |||||| CTTCTTGATTGTCGATCTCTGTCACA Gabarap mmu-miR-150 362 381 gUGACCAUGUUCCCAACCCUCU |:|| ||| || ||||:|| gATTG--ACATTGGATGGGGGA Gabarap mmu-miR-17-3p 135 154 auGUUCACGGGAGUGACGUCa | ||| ||||| | |||| ctCCAGT-CCCTCTCAGCAGg Gabarap mmu-miR-17-5p 89 119 UGAUGGACGUGACA----UU---CGUGAAac || |||| | :| | :| |||||| ACCACCTCCTTTCTTCAGGACCTGCACTTaa Gabarap mmu-miR-185 122 139 cuugaCGGAAAGAGAGGU | || |||||||| tttgaGGCTGTCTCTCCA Gabarap mmu-miR-191 1 32 UCGACGAAA--------A--CCCUAAGGCAAc ||||||| | | |||:|||| || AGCTGCTGTACCTGAGGTGGGGGGTTCCATTc Gabarap mmu-miR-196b 395 416 gGUUG-UUGUCCUUUGAUGGau |||: || ||||||| ||| tCAATAAAAAGGAAACCACCga Gabarap mmu-miR-199a 348 374 CUUGUCCAUCAGAC----UUGUGACCc |:::||||:| | :|||:||| GGGTAGGTGGAAGGGATTGACATTGGa Gabarap mmu-miR-199b 348 374 CUUGUCCA----UCAGAUUUGUGACCc |:::|||| :| | :|||:||| GGGTAGGTGGAAGGGATTGACATTGGa Gabarap mmu-miR-204 345 364 guCCGUAUCCUACUGUUUCCCUu || :|||| || :|||||| ggGGGGTAGG-TG--GAAGGGAt Gabarap mmu-miR-206 47 67 gGUGUGUGAAGGAA-UGUAAGGU |:| | ||||||| ||| |||| gCGCTC-CTTCCTTGACA-TCCA Gabarap mmu-miR-207 353 383 CUCCCUCCUCU--CGGU------CCUCUUCg |: ||| |:|| | || ||:|:|| GGTGGAAGGGATTGACATTGGATGGGGGAGg Gabarap mmu-miR-20a 97 119 GAUGGACGUGAUAUUCGUGAAau || :|| || | |||||| CTTTCTTCAGGACCTGCACTTaa Gabarap mmu-miR-20b 91 119 aUGGACG--UGA--UACU---CGUGAAac |||| | || | || |||||| cACCTCCTTTCTTCAGGACCTGCACTTaa Gabarap mmu-miR-211 346 364 uCCGUUUCCUACUGUUUCCCUu || : ||| || :|||||| gGGGGTAGG-TG--GAAGGGAt Gabarap mmu-miR-218 367 395 UGU-ACCAA-----UCUA--GUUCGUGUu ||| ||| | ||:| |:||||| ACATTGGATGGGGGAGGTAGGAGGCACAt Gabarap mmu-miR-223 347 369 CCCCAUAAAC--UGUUUGACUGU |||||| || | ::|:||||| GGGGTAGGTGGAAGGGATTGACA Gabarap mmu-miR-24 1 19 gacaagGACGAC-UUGACUCggu |||||| | ||||| ----agCTGCTGTACCTGAGgtg Gabarap mmu-miR-24* 363 393 UGACUAUAGUCGA--------GUCAUCCGUG |:||| ||::| | :|| |||||| ATTGACATTGGATGGGGGAGGTAGGAGGCAC Gabarap mmu-miR-292-3p 29 52 UGUGA-GUUUUGGACCGCCGUGAa |: || |:||: ||:|||:|| ATTCTACGAAGAGAGGTGGCGCTc Gabarap mmu-miR-292-5p 102 128 guuUUCU---CGGGGGU--CAAACUCa |:|| || |::| ||||||| ttcAGGACCTGCACTTAATGTTTGAGg Gabarap mmu-miR-296 358 384 UGUCCUAACU----CC--CCCCCggga | :||||||| || ||||| AAGGGATTGACATTGGATGGGGGaggt Gabarap mmu-miR-300 36 65 CUUCUCUCGAACG-------GGAAC-GUAu |||||||| | || ||||| ||| GAAGAGAGGTGGCGCTCCTTCCTTGACATc Gabarap mmu-miR-337 402 422 UUUCCGUAGUAUAUCCUCGACUU ||||| | | | |||||||| AAAGGAAAC-CA-CCGAGCTGAA Gabarap mmu-miR-351 78 109 GUCCGAGUUUCCCG--------AGGAGUCCcu |||||||||| | ||:||||| CAGGCTCAAACACCACCTCCTTTCTTCAGGac Gabarap mmu-miR-370 135 155 uuGGUCCAAGGUGGGGUCGUCCg |||| ||| :|:||||||| ctCCAG--TCCCTCTCAGCAGGa Gabarap mmu-miR-374-3p 154 176 gagCCUGUUACUAU-UAUGUUGG ||::||||:|| |||||:|| gagGGGTAATGGTAGATACAGCC Gabarap mmu-miR-376a 15 38 UGCA-CCUAAAAGG--AGAUGCUa | || ||: |||| ||||||| AGGTGGGGGGTTCCATTCTACGAa Gabarap mmu-miR-376b 14 38 uUUCA-CCUACAAGG--AGAUACUa |:|| ||: ||||| |||| || gAGGTGGGGGGTTCCATTCTACGAa Gabarap mmu-miR-378 367 389 UGUGUCCUG-GACCUCAGUCCUC |||: |||: |||| :||||| ACATTGGATGGGGGAGGTAGGAG Gabarap mmu-miR-423 385 419 gaCUCCCCGGAGU--------C-----UGGCUCGA |||| | ||| | |||||||| agGAGGCACATCAATAAAAAGGAAACCACCGAGCT Gabarap mmu-miR-434-5p 222 247 CCAAGUUUG--GUACU--CAGCUCGA | ||:|:|| | ||| ||||| || GATTTAGACTTCTTGATTGTCGATCT Gabarap mmu-miR-451 147 168 uugaGUCAUUACCAUUGCCAaa ||| |: |||||:||| tcagCAGGAGGGGTAATGGTag Gabarap mmu-miR-455-5p 379 396 gCUACAUCAGGUUUCCGUGUAu || |||| :|||||||| gGAGGTAG----GAGGCACATc Gabarap mmu-miR-465-3p 31 63 AGAUGAAUCUUUCC-----------GGGACUag ||||| |||:||| ||:||| TCTACGAAGAGAGGTGGCGCTCCTTCCTTGAca Gabarap mmu-miR-469 365 392 cCUGUGGUUCUAGUUACU---UUCUCCGU ||||:: :||| :: || |:|||||| tGACATT-GGATGGGGGAGGTAGGAGGCA Gabarap mmu-miR-471 16 38 aCACUUUUCGUGAUAUGAUGCau |||::::|: | || ||||| gGTGGGGGGTTCCATTCTACGaa Gabarap mmu-miR-483 367 392 UGU--UCUGCCCUC-CCCUCCUCacu ||| :||:|||:| || ||||| ACATTGGATGGGGGAGGTAGGAGgca Gabarap mmu-miR-485-5p 153 179 CUUAAGUAGUGCCG-----GUCGGAGa |:| :| |:||: ||||||| GGAGGGGTAATGGTAGATACAGCCTCc Gabarap mmu-miR-495 105 128 UUCUUCACGUGG--UACAAACaaa |:|| |||||: ||||||| AGGACCTGCACTTAATGTTTGagg Gabarap mmu-miR-541 290 324 acACUGGUUGU---AGUC---------UUAGGGAA || ||| |: |||| |||||||| acTGCCCATCGGGCTCAGAACCCCAATAATCCCTT Gabarap mmu-miR-542-3p 232 255 AAAGUCAAUAGUU--AGACAGUGU | |:: ||:||:| ||||||||| TCTTGATTGTCGATCTCTGTCACA Gabarap mmu-miR-667 339 359 GAACCCGACCCACCGUCCACagu ||| :|||| ||:||||| CTT--TTTGGGGGGTAGGTGgaa Gabarap mmu-miR-672 78 97 GUGUGUGUCAUGUGGUUGGAGu || :| || ||| | ||||| CAGGCTCA-AACA-CCACCTCc Gabarap mmu-miR-681 108 131 UCGACG-GACGGUC--GCUCCGAC | |||| || | :||||||| ACCTGCACTTAATGTTTGAGGCTG Gabarap mmu-miR-683 134 154 cuccugugucgaauGUCGUCC ||||||| tctccagtccctctCAGCAGG Gabarap mmu-miR-691 90 110 aaaaGACGGAGAGAAGUCCUua || |||:||||||||| ccacCT-CCTTTCTTCAGGAcc Gabarap mmu-miR-692 14 43 CU-CACUCCGC-------GA-GUUUCUCUa || |||:|| | || |:|||||| GAGGTGGGGGGTTCCATTCTACGAAGAGAg Gabarap mmu-miR-697 98 133 AGAGGUGUCCUGG---------------UCCUACAa |:||: ||||||| ||| ||| TTTCTTCAGGACCTGCACTTAATGTTTGAGGCTGTc Gabarap mmu-miR-702 1 23 cUCG-CCCCAU--UUCCCACCCgu ||| | ||| : |||||| -AGCTGCTGTACCTGAGGTGGGgg Gabarap mmu-miR-702 17 51 CUCGCCCCA------------UUUC-CCACC-CGu | | ||||| |:|| ||||| || GTGGGGGGTTCCATTCTACGAAGAGAGGTGGCGCt Gabarap mmu-miR-710 94 113 GAGUUGAGAGGGGUUCUGAACc ||| ||:||::||:||| || CTC--CTTTCTTCAGGACCTGc Gabarap mmu-miR-721 91 117 aaGGGGGAA--AA----UUAACGUGAc ||:|||| || | |||||| caCCTCCTTTCTTCAGGACCTGCACTt Gabarap mmu-miR-744 128 147 CGACAAUCGGGAUCGGGGCGu |||| | |:| ||:||| | GCTG-TCTCTCCAGTCCCTCt Gabarap mmu-miR-762 126 144 cgaGACAGGGCCGGGGUCGGGG |||||: |:||||:||| aggCTGTCT---CTCCAGTCCC Gabarap mmu-miR-763 131 154 CGGUGA--CCAAGAAGGGUCGACC |:| || || | ||:|||| || GTCTCTCCAGTCCCTCTCAGCAGG Gabarap mmu-miR-764-3p 32 54 ugucaacggugauACCG-GAGGA |||| ||||| ctacgaagagaggTGGCGCTCCT Gabarap mmu-miR-770-3p 65 87 GGUCGAGG-UGCAGUCCGGGUgc ||||:||| | ||||||:|| CCAGTTCCTCCTTCAGGCTCAaa Gabarap mmu-miR-93 97 119 GAUGGACGUGCUUGUCGUGAAac || :|| || || | |||||| CTTTCTTCAGGACCTGCACTTaa

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Gabarap RAID00062919 mmu-miR-325-3p miRNA MIMAT0004640 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID00081531 mmu-miR-485-5p miRNA MIMAT0003128 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00159495 mmu-miR-3100-3p miRNA MIMAT0014920 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00212439 mmu-miR-30c-5p miRNA MIMAT0000514 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00310813 mmu-miR-7054-5p miRNA MIMAT0028012 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00333000 mmu-miR-6946-5p miRNA MIMAT0027792 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00378514 mmu-miR-383-5p miRNA MIMAT0000748 Gabarap mRNA 56486 CLIP-seq 0.5483 Gabarap RAID00410725 mmu-miR-6999-5p miRNA MIMAT0027900 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00471703 mmu-miR-384-5p miRNA MIMAT0004745 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00505683 mmu-miR-5129-3p miRNA MIMAT0022987 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID00572741 mmu-miR-7072-5p miRNA MIMAT0028050 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID00937380 mmu-miR-488-3p miRNA MIMAT0003450 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID00945382 mmu-miR-455-5p miRNA MIMAT0003485 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01052231 mmu-miR-6338 miRNA MIMAT0025081 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01058913 mmu-miR-292a-5p miRNA MIMAT0000369 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID01099496 mmu-miR-7045-3p miRNA MIMAT0027995 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01100569 mmu-miR-293-5p miRNA MIMAT0004573 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01159174 mmu-miR-541-5p miRNA MIMAT0003170 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01209269 mmu-miR-185-5p miRNA MIMAT0000214 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01269701 mmu-miR-369-5p miRNA MIMAT0003185 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01504154 mmu-miR-882 miRNA MIMAT0004847 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID01761725 mmu-miR-30e-5p miRNA MIMAT0000248 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01867596 mmu-miR-7681-3p miRNA MIMAT0029883 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01900694 mmu-miR-30b-5p miRNA MIMAT0000130 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID01955274 mmu-miR-7035-3p miRNA MIMAT0027975 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID02003698 mmu-miR-759 miRNA MIMAT0003897 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID02124590 mmu-miR-6947-3p miRNA MIMAT0027795 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID02587471 mmu-miR-7676-5p miRNA MIMAT0029860 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID02741345 mmu-miR-370-3p miRNA MIMAT0001095 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID02844217 mmu-miR-6956-5p miRNA MIMAT0027812 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID02915943 mmu-mir-325 miRNA MI0000597 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID02943120 mmu-miR-6916-5p miRNA MIMAT0027732 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03091270 mmu-miR-6918-3p miRNA MIMAT0027737 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03101267 mmu-miR-6942-5p miRNA MIMAT0027784 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03136015 mmu-miR-6998-5p miRNA MIMAT0027898 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03143110 mmu-miR-7020-3p miRNA MIMAT0027945 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03260774 mmu-miR-30d-5p miRNA MIMAT0000515 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03297450 mmu-miR-290a-5p miRNA MIMAT0000366 Gabarap mRNA 56486 Prediction 0.2202 Gabarap RAID03358142 mmu-miR-146a-5p miRNA MIMAT0000158 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03419478 mmu-miR-376a-3p miRNA MIMAT0000740 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03473985 mmu-miR-146b-5p miRNA MIMAT0003475 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03548693 mmu-miR-542-3p miRNA MIMAT0003172 Gabarap mRNA 56486 CLIP-seq//Prediction 0.6559 Gabarap RAID03601985 mmu-miR-6971-3p miRNA MIMAT0027845 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03803235 mmu-miR-1968-3p miRNA MIMAT0017350 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03904600 mmu-miR-30a-5p miRNA MIMAT0000128 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03921922 mmu-miR-7052-5p miRNA MIMAT0028008 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID03952671 mmu-miR-29b-2-5p miRNA MIMAT0017063 Gabarap mRNA 56486 Prediction 0.1828 Gabarap RAID04103496 G730013B05Rik lncRNA 619312 Gabarap protein 56486 Microarray//RNA-seq 0.6606