DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 26893 Cops6 auuugGUGGUAUACUUUGGUCg || || | :|||||| acgugCAACACAAUGAACCAGu 2 18 276 297 [mm9:5:138605012-138605033:+] 0.8121 137 6 -15.10 -0.2010 MIMAT0004530 mmu-miR-127* 26893 Cops6 uaGUCUCGGGAGAC--UCGAAGUc ::|| :|:| | ||||||| caUGGACUCUUAAGGAAGCUUCAc 2 21 524 547 [mm9:5:138605260-138605283:+] 0.5213 147 7 -14.34 -0.5866 MIMAT0000217 mmu-miR-188-5p 26893 Cops6 gggaggugguACGUUCCCUAc || ||||||| augaugguucUGGAAGGGAUg 2 12 368 388 [mm9:5:138605104-138605124:+] 0.6502 147 7 -17.24 -0.2072 MIMAT0000217 mmu-miR-188-5p 26893 Cops6 gggaggugguACGUUCCCUAc || ||||||| -ugaugguucUGGAAGGGAUg 2 12 1 20 [mm9:5:138605105-138605124:+] 0.6502 147 7 -17.24 -0.4086 MIMAT0004547 mmu-miR-203* 26893 Cops6 acaacuugacaGUU-CUUGGUga ||| |||||| aacgugcaacaCAAUGAACCAgu 3 12 275 297 [mm9:5:138605011-138605033:+] 0.8121 126 0 -11.39 -0.1712 MIMAT0000367 mmu-miR-291a-5p 26893 Cops6 ucuCUCCCGGAGGU-GAAACUAc ||| |:: || ||||||| uguGAGUGUUGACACCUUUGAUg 2 20 101 123 [mm9:5:138604837-138604859:+] 0.5997 154 7 -18.51 -0.1306 MIMAT0004624 mmu-miR-15a* 26893 Cops6 acUCCGUCGUGUCAUACCGGAc | |::| :| ||||||| ugACGUGGGGC-UCAUGGCCUa 2 21 236 256 [mm9:5:138604972-138604992:+] 0.8121 142 7 -18.09 -0.6047 MIMAT0004636 mmu-miR-93* 26893 Cops6 gccCUUCACG-AUCGAGUC-GUCa |: |||: :|||||| ||| gauGGUGUGUGGGGCUCAGACAGc 2 20 385 408 [mm9:5:138605121-138605144:+] 0.5264 122 0 -22.93 -0.1330 MIMAT0004636 mmu-miR-93* 26893 Cops6 gccCUUCACG-AUCGAGUC-GUCa |: |||: :|||||| ||| gauGGUGUGUGGGGCUCAGACAGc 2 20 17 40 [mm9:5:138605121-138605144:+] 0.5264 122 0 -22.93 -0.1368 MIMAT0004638 mmu-miR-323-5p 26893 Cops6 cgcuugcgcggugcCUGGUGGa ||||||| aauccacauuuuuuGACCACCu 2 9 553 574 [mm9:5:138605289-138605310:+] 0.4788 140 7 -18.45 -0.9627 MIMAT0000569 mmu-miR-330* 26893 Cops6 agAGACGUCCGGGA---CA-CGAAACg |: |||| ||:| || |||||| ccUUAGCAGCCCUUCCAGUGGCUUUGu 2 22 469 495 [mm9:5:138605205-138605231:+] 0.5642 128 6 -22.22 -0.1528 MIMAT0000605 mmu-miR-350 26893 Cops6 cuuUCACAUACCCGAAACACUu | || | | ||||||| cacAAUGAACCAG-UUUGUGAa 2 20 284 304 [mm9:5:138605020-138605040:+] 0.8121 141 7 -8.25 -0.9452 MIMAT0005444 mmu-miR-218-2* 26893 Cops6 gcgcCACGAACUGU--CUUGGUac |||| ||| |||||| aaacGUGCAACACAAUGAACCAgu 3 19 274 297 [mm9:5:138605010-138605033:+] 0.8121 133 0 -14.54 -0.1762 MIMAT0000672 mmu-miR-199b* 26893 Cops6 cuuguccaUCAGAUUUGUGACCc || | ||||||| guccucucAGGCACCACACUGGu 2 16 494 516 [mm9:5:138605230-138605252:+] 0.5639 143 7 -15.09 -0.2554 MIMAT0000740 mmu-miR-376a 26893 Cops6 ugcaccuaaaAGGAGAUGCUa |||||||||| aaguucaacgUCCUCUACGAc 2 12 306 326 [mm9:5:138605042-138605062:+] 0.8121 155 7 -18.33 -0.3424 MIMAT0000744 mmu-miR-380-5p 26893 Cops6 gcgUACAAGAUACCAGUUGGUa | |||| | ||||||| gagAGGUUCCCU--UCAACCAu 2 20 1 20 [mm9:5:138604737-138604756:+] 0.5982 148 7 -13.82 -0.2315 MIMAT0002889 mmu-miR-532-5p 26893 Cops6 ugcCAG--GAUG-UG--AGUUCCGUAc ||| |||| || |||||||| aacGUCCUCUACGACCGACAAGGCAUu 2 20 312 338 [mm9:5:138605048-138605074:+] 0.8121 152 7 -22.35 -0.2973 MIMAT0003173 mmu-miR-547 26893 Cops6 gagugaguuuCUACAUGGUuc || |||||| ccauggaccuGA-GUACCAca 3 12 45 64 [mm9:5:138605149-138605168:+] 0.5645 121 0 -9.56 -0.1089 MIMAT0003189 mmu-miR-291b-5p 26893 Cops6 ccuCUCCCGGAGGU-GAAACUAg ||| |:: || ||||||| uguGAGUGUUGACACCUUUGAUg 2 20 101 123 [mm9:5:138604837-138604859:+] 0.5997 154 7 -14.29 -0.1306 MIMAT0004820 mmu-miR-744* 26893 Cops6 uccaacuccaaucacCGUUGUc |||||| ccaucaccaaaacguGCAACAc 2 8 265 286 [mm9:5:138605001-138605022:+] 0.8121 120 6 -6.19 -0.1158 MIMAT0003891 mmu-miR-770-3p 26893 Cops6 ggucgAGGUGCAGUCCG-GGUGc ||| | |||||| |||| cuuugUCCUC-UCAGGCACCACa 2 18 490 511 [mm9:5:138605226-138605247:+] 0.5639 127 0 -22.07 -0.2351 MIMAT0003892 mmu-miR-762 26893 Cops6 cgagacagggccgggGUCGGGg |||||| ucauuaauaaaagagCAGCCCc 2 8 81 102 [mm9:5:138605185-138605206:+] 0.5645 120 6 -15.85 -0.2810 MIMAT0003468 mmu-miR-689 26893 Cops6 ccuggGGCGGCU--CGCCCCUGc ||| ||| |||||||| auuggCCGGCGAAUGCGGGGACu 2 17 336 358 [mm9:5:138605072-138605094:+] 0.8121 159 7 -28.85 -0.8046 MIMAT0003495 mmu-miR-705 26893 Cops6 acggguggGGUGGA-GGGUGg |||||| ||||| uuuuuugaCCACCUACCCACc 2 13 561 581 [mm9:5:138605297-138605317:+] 0.4788 124 0 -25.85 -0.6871 MIMAT0003496 mmu-miR-706 26893 Cops6 aaaaaacucUGU-CCCAAAGAGa ||| |||||||| ucaggcaccACACUGGUUUCUCa 2 14 500 522 [mm9:5:138605236-138605258:+] 0.5639 148 7 -13.24 -0.6812 MIMAT0004838 mmu-miR-742* 26893 Cops6 acuaaucguUGGUACACUCAu |: |||||||| cagacuuuuAUGAUGUGAGUg 2 13 88 108 [mm9:5:138604824-138604844:+] 0.5982 148 7 -14.09 -0.8166 MIMAT0004237 mmu-miR-742 26893 Cops6 aaauGGGUCGUACCACCGAAAg ||: || |||||||| cagcCCUUCCA--GUGGCUUUg 2 19 475 494 [mm9:5:138605211-138605230:+] 0.5642 147 7 -16.78 -0.1252 MIMAT0004848 mmu-miR-883a-5p 26893 Cops6 cauUGAC--GAUGAAGAGAGUCGu |||| :| | :||||||| gucACUGUCUUCCAGUUCUCAGCa 2 20 49 72 [mm9:5:138604785-138604808:+] 0.5982 150 7 -21.04 -0.7385 MIMAT0004884 mmu-miR-466h 26893 Cops6 auGU-GUGUUCGUGUACG-UGUGu || ||| | ||:||| |||| acCAUCACCAAAACGUGCAACACa 2 21 264 287 [mm9:5:138605000-138605023:+] 0.8121 127 0 -20.75 -1.2524 MIMAT0004861 mmu-miR-877 26893 Cops6 gggaCGCGGUAGAGGAGAUg |: | | ||||||| acaaGUUCAACGUCCUCUAc 2 17 304 323 [mm9:5:138605040-138605059:+] 0.8121 144 7 -16.47 -0.5200 MIMAT0004942 mmu-miR-598 26893 Cops6 auugcuacUGCUGCUACUGCAu |:| | ||||||| ucccagcaAUG-CAAUGACGUg 2 15 222 242 [mm9:5:138604958-138604978:+] 0.6678 144 7 -13.07 -0.2272 MIMAT0005836 mmu-miR-1186 26893 Cops6 guACGGAA-AUUAAG-GUCGUGAg ||:||| |:||| ||||||| acUGUCUUCCAGUUCUCAGCACUg 2 21 52 75 [mm9:5:138604788-138604811:+] 0.5982 166 7 -22.50 -0.6585 MIMAT0005852 mmu-miR-1194 26893 Cops6 uccuAGAUCGUCAAUGAGUAAg |:||| || ||||||| ucccUUUAG-AGAAACUCAUUa 2 19 434 454 [mm9:5:138605170-138605190:+] 0.5645 156 7 -12.35 -1.1910 MIMAT0005852 mmu-miR-1194 26893 Cops6 uccuAGAUCGUCAAUGAGUAAg |:||| || ||||||| ucccUUUAG-AGAAACUCAUUa 2 19 66 86 [mm9:5:138605170-138605190:+] 0.5645 156 7 -12.35 -1.2178 MIMAT0005858 mmu-miR-1197 26893 Cops6 ucUUCA-UCUG-GUACACAG-GAu |:|| | || || ||||| || ggAGGUGAAACUCAAGUGUCACUg 2 20 155 178 [mm9:5:138604891-138604914:+] 0.4230 121 0 -18.77 -0.2005 MIMAT0007863 mmu-miR-1902 26893 Cops6 uucAGUA-CGGAU-GA--CGUGG-AGa |||| ||||| || ||||| || ggcUCAUGGCCUACCUCGGCACCAUCa 2 20 244 270 [mm9:5:138604980-138605006:+] 0.8121 128 0 -22.33 -0.6379 MIMAT0009433 mmu-miR-1960 26893 Cops6 ucGGGAGAAGAUUGUCGUGACc :|| |||| |||||||| cuUCCAGUUCU--CAGCACUGa 2 21 57 76 [mm9:5:138604793-138604812:+] 0.5982 157 7 -19.48 -0.6849 MIMAT0009434 mmu-miR-1961 26893 Cops6 aaGAUUGAU-GAUGGAGu || |: : ||||||| ggCUCAUGGCCUACCUCg 2 16 244 261 [mm9:5:138604980-138604997:+] 0.8121 142 7 -14.67 -0.3691 MIMAT0009445 mmu-miR-1274a 26893 Cops6 accgcggacuuGUCCCUGGACu || ||||||| gacagcuguucCAUGGACCUGa 2 12 403 424 [mm9:5:138605139-138605160:+] 0.5645 147 7 -21.11 -0.5217 MIMAT0009445 mmu-miR-1274a 26893 Cops6 accgcggacuuGUCCCUGGACu || ||||||| gacagcuguucCAUGGACCUGa 2 12 35 56 [mm9:5:138605139-138605160:+] 0.5645 147 7 -21.11 -0.5131 MIMAT0009459 mmu-miR-1982* 26893 Cops6 ggAGGGGU-CCUGGGAGGGUu ||:::: | |||||||| guUCUUUGUGUUCCCUCCCAg 2 19 207 227 [mm9:5:138604943-138604963:+] 0.5235 149 7 -25.81 -0.1404 MIMAT0011214 mmu-miR-2138 26893 Cops6 uaaggcgguucggGCAAGGGAa :||||||| aacugguucuuugUGUUCCCUc 2 10 202 223 [mm9:5:138604938-138604959:+] 0.5235 141 7 -17.02 -0.3006 MIMAT0011214 mmu-miR-2138 26893 Cops6 uaaggcgguucgggCAAGGGAa ||||||| ---------gagagGUUCCCUu 2 9 1 13 [mm9:5:138604737-138604749:+] 0.5982 140 7 -13.27 -0.2683 MIMAT0000121 mmu-let-7g 26893 Cops6 uugacauguuugauGAUGGAGu ||||||| guggggcucauggcCUACCUCg 2 9 240 261 [mm9:5:138604976-138604997:+] 0.8121 140 7 -14.75 -0.3720 MIMAT0000122 mmu-let-7i 26893 Cops6 uugUCGUGU-UUGAUGAUGGAGu :|| || ::| ||||||| uggGGCUCAUGGC--CUACCUCg 2 20 241 261 [mm9:5:138604977-138604997:+] 0.8121 143 7 -17.06 -0.3468 MIMAT0000123 mmu-miR-1 26893 Cops6 uauguaugaagaaaUGUAAGGu ||||||| uggaccugaguaccACAUUCCc 2 9 416 437 [mm9:5:138605152-138605173:+] 0.5645 140 7 -8.81 -0.3473 MIMAT0000123 mmu-miR-1 26893 Cops6 uauguaugaagaaaUGUAAGGu ||||||| uggaccugaguaccACAUUCCc 2 9 48 69 [mm9:5:138605152-138605173:+] 0.5645 140 7 -8.81 -0.3317 MIMAT0000125 mmu-miR-23b 26893 Cops6 ccauuagggaccgUUACACUa ||||||| uugaaguagacaaAAUGUGAu 2 9 608 628 [mm9:5:138605344-138605364:+] 0.4908 140 7 -10.94 -0.4511 MIMAT0000144 mmu-miR-132 26893 Cops6 gcUGGUACCGACAUCUGACAAu :| | || | :||||||| cgGCGAAUGC-GGGGACUGUUu 2 21 342 362 [mm9:5:138605078-138605098:+] 0.8121 146 7 -18.61 -0.6152 MIMAT0000153 mmu-miR-141 26893 Cops6 gguagaaauGGUCUGUC-ACAAu :||||||| |||| guguggggcUCAGACAGCUGUUc 2 14 23 45 [mm9:5:138605127-138605149:+] 0.5264 125 0 -15.08 -0.1040 MIMAT0000158 mmu-miR-146a 26893 Cops6 uugGGU-ACCUUAAGUCAAGAGu :|| || | |||||||| augUCACUGUCUUCCAGUUCUCa 2 20 47 69 [mm9:5:138604783-138604805:+] 0.5982 150 7 -16.80 -0.5964 MIMAT0000229 mmu-miR-199a-5p 26893 Cops6 cuuguccaUCAGACUUGUGACCc || | ||||||| guccucucAGGCACCACACUGGu 2 16 494 516 [mm9:5:138605230-138605252:+] 0.5639 143 7 -15.09 -0.2554 MIMAT0000239 mmu-miR-206 26893 Cops6 ggugugUGAAGGAAUGUAAGGu | | || ||||||| gaccugAGUACC--ACAUUCCc 2 17 418 437 [mm9:5:138605154-138605173:+] 0.5645 141 7 -11.05 -0.3259 MIMAT0000239 mmu-miR-206 26893 Cops6 ggugugUGAAGGAAUGUAAGGu | | || ||||||| gaccugAGUACC--ACAUUCCc 2 17 50 69 [mm9:5:138605154-138605173:+] 0.5645 141 7 -11.05 -0.3110 MIMAT0000383 mmu-let-7d 26893 Cops6 uugauacguuggauGAUGGAGa ||||||| guggggcucauggcCUACCUCg 2 9 240 261 [mm9:5:138604976-138604997:+] 0.8121 140 7 -13.44 -0.3720 MIMAT0000519 mmu-miR-200a 26893 Cops6 uguagcaauGGUCUGUC-ACAAu :||||||| |||| guguggggcUCAGACAGCUGUUc 2 14 23 45 [mm9:5:138605127-138605149:+] 0.5264 125 0 -18.24 -0.1040 MIMAT0000521 mmu-let-7a 26893 Cops6 uugauauguuggauGAUGGAGu ||||||| guggggcucauggcCUACCUCg 2 9 240 261 [mm9:5:138604976-138604997:+] 0.8121 140 7 -14.69 -0.3720 MIMAT0000522 mmu-let-7b 26893 Cops6 uugGUGUGUUGGAUGAUGGAGu | ||:::| ||||||| gggCUCAUGGC---CUACCUCg 2 20 243 261 [mm9:5:138604979-138604997:+] 0.8121 143 7 -18.50 -0.3468 MIMAT0000523 mmu-let-7c 26893 Cops6 uugguauguuggauGAUGGAGu ||||||| guggggcucauggcCUACCUCg 2 9 240 261 [mm9:5:138604976-138604997:+] 0.8121 140 7 -15.83 -0.3720 MIMAT0000524 mmu-let-7e 26893 Cops6 uugauauguuggaGGAUGGAGu |||||||| guggggcucauggCCUACCUCg 2 10 240 261 [mm9:5:138604976-138604997:+] 0.8121 145 7 -19.28 -0.3720 MIMAT0000525 mmu-let-7f 26893 Cops6 uugauauguUAGAUGAUGGAGu || ||||||| guggggcucAUGGCCUACCUCg 2 14 240 261 [mm9:5:138604976-138604997:+] 0.8121 141 7 -13.50 -0.3720 MIMAT0000532 mmu-miR-23a 26893 Cops6 ccuuuagggaccgUUACACUa ||||||| uugaaguagacaaAAUGUGAu 2 9 608 628 [mm9:5:138605344-138605364:+] 0.4908 140 7 -12.51 -0.4511 MIMAT0000539 mmu-miR-92a 26893 Cops6 guccggcccUGUUCACGUUau | | |||||| ccaucaccaAAACGUGCAAca 3 13 265 285 [mm9:5:138605001-138605021:+] 0.8121 124 0 -7.54 -0.1667 MIMAT0000545 mmu-miR-98 26893 Cops6 uuguuauguugaauGAUGGAGu ||||||| guggggcucauggcCUACCUCg 2 9 240 261 [mm9:5:138604976-138604997:+] 0.8121 140 7 -15.16 -0.3720 MIMAT0000567 mmu-miR-329 26893 Cops6 uuUUUCCAAUCGACCCACACAa :|||| | | ||||||| ugGAAGG---GAU-GGUGUGUg 2 21 378 395 [mm9:5:138605114-138605131:+] 0.4883 142 7 -17.65 -0.1495 MIMAT0000590 mmu-miR-342-3p 26893 Cops6 ugcccacgcuAAAGAC-ACACUCu ||| || |||||| aagacagacuUUUAUGAUGUGAGu 2 14 84 107 [mm9:5:138604820-138604843:+] 0.5982 121 6 -11.47 -0.6885 MIMAT0000652 mmu-miR-25 26893 Cops6 agucUGGCUCUGUUCACGUUac ||| | || |||||| caucACCAAAAC--GUGCAAca 3 19 266 285 [mm9:5:138605002-138605021:+] 0.8121 131 0 -7.69 -0.1517 MIMAT0000654 mmu-miR-32 26893 Cops6 acguugaaucaUUACACGUUau || |||||| accaucaccaaAACGUGCAAca 3 12 264 285 [mm9:5:138605000-138605021:+] 0.8121 127 0 -5.66 -0.1683 MIMAT0000659 mmu-miR-212 26893 Cops6 acCGG-CACUGA--CCUCUGACAAu ||| | || | ||:||||||| ugGCCGGCGAAUGCGGGGACUGUUu 2 21 338 362 [mm9:5:138605074-138605098:+] 0.8121 158 7 -29.28 -0.6189 MIMAT0000667 mmu-miR-33 26893 Cops6 acguuacguuGAUGUUACGUg | :||||||| uguucccuccCAGCAAUGCAa 2 12 215 235 [mm9:5:138604951-138604971:+] 0.6678 143 7 -11.56 -0.5399 MIMAT0000677 mmu-miR-7a 26893 Cops6 uguuGUUUUAGUGAUCAGAAGGu | | :||||| ||||||| ugccCUAUGUCACU-GUCUUCCa 2 20 41 62 [mm9:5:138604777-138604798:+] 0.5982 161 7 -21.45 -0.6163 MIMAT0000678 mmu-miR-7b 26893 Cops6 uguuGUUUUAGUGUUCAGAAGGu | | :|||| ||||||| ugccCUAUGUCAC-UGUCUUCCa 2 20 41 62 [mm9:5:138604777-138604798:+] 0.5982 153 7 -19.23 -0.6449 MIMAT0004684 mmu-miR-362-3p 26893 Cops6 acUUAGGAACUUGU---CCACACAa ::|:|| ||| : ||||||| auGGUUCUGGAAGGGAUGGUGUGUg 2 21 371 395 [mm9:5:138605107-138605131:+] 0.4883 151 7 -18.36 -0.1642 MIMAT0000708 mmu-miR-363 26893 Cops6 augucuaccUAUGGCACGUUaa | | ||||||| accaucaccAAAACGUGCAAca 3 14 264 285 [mm9:5:138605000-138605021:+] 0.8121 129 0 -10.28 -0.1683 MIMAT0000739 mmu-miR-375 26893 Cops6 agugcGCUCGGCUUGCUUGUUu | ||:: ::|||||| augaaCCAGUU-UGUGAACAAg 2 18 288 308 [mm9:5:138605024-138605044:+] 0.8121 127 6 -14.25 -0.1186 MIMAT0001092 mmu-miR-376b 26893 Cops6 uuCACCU-ACAAGGAGA-UACUa | ||| ||||::||| |||| gcGGGGACUGUUUUUCUGAUGAu 2 20 350 372 [mm9:5:138605086-138605108:+] 0.6502 134 0 -18.80 -0.5495 MIMAT0003181 mmu-miR-367 26893 Cops6 agUGGUAACGAUUU--CACGUUaa ||||| | ||| |||||| gcACCAUCACCAAAACGUGCAAca 3 21 262 285 [mm9:5:138604998-138605021:+] 0.8121 143 0 -16.02 -0.1699 MIMAT0003456 mmu-miR-495 26893 Cops6 uucuUCACGUGGUACAAACAaa | || |||| |||||| acacAAUGAACCA-GUUUGUga 3 19 283 303 [mm9:5:138605019-138605039:+] 0.8121 140 0 -11.98 -0.1036 MIMAT0003475 mmu-miR-146b 26893 Cops6 ucGGAUAC-----CUUAA-GUCAAGAGu |||||| | || |||||||| gcCCUAUGUCACUGUCUUCCAGUUCUCa 2 21 42 69 [mm9:5:138604778-138604805:+] 0.5982 150 7 -20.49 -0.5964 MIMAT0003513 mmu-miR-505 26893 Cops6 ucuuuugguCGUUCACAACUGc |::||||||||| uuuuaugauGUGAGUGUUGACa 2 14 93 114 [mm9:5:138604829-138604850:+] 0.5982 157 7 -14.53 -0.7484 MIMAT0004899 mmu-miR-92b 26893 Cops6 ccuccggcccugcuCACGUUau |||||| accaucaccaaaacGUGCAAca 3 9 264 285 [mm9:5:138605000-138605021:+] 0.8121 120 0 -8.41 -0.1667 MIMAT0004936 mmu-miR-873 26893 Cops6 ucCUCUGAG--UGUU--CAAGG-ACg |:|:||| |||: ||||| || guGGGGCUCAGACAGCUGUUCCAUGg 2 20 393 418 [mm9:5:138605129-138605154:+] 0.5264 121 0 -19.38 -0.1834 MIMAT0004936 mmu-miR-873 26893 Cops6 ucCUCUGAG--UGUU--CAAGG-ACg |:|:||| |||: ||||| || guGGGGCUCAGACAGCUGUUCCAUGg 2 20 25 50 [mm9:5:138605129-138605154:+] 0.5264 121 0 -19.38 -0.1629 MIMAT0005850 mmu-miR-1192 26893 Cops6 uuaaaccagacaaaCAAACAaa |||||| aacacaaugaaccaGUUUGUga 3 9 282 303 [mm9:5:138605018-138605039:+] 0.8121 120 0 -4.77 -0.1165

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061383 Cops6 Mus musculus 26893

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cops6 mmu-miR-188-5p beg:7 end:21 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& || |||||||| &5' ----------TGGAAGGGATG 3' Cops6 mmu-miR-1194 beg:67 end:86 pic:3' TCCTAGATCGTCAATGAGTAAG 5'& |.||| || ||||||| &5' ----TTTAG-AGAAACTCATT- 3' Cops6 mmu-miR-362-3p beg:9 end:27 pic:3' ACTTAGGAACTTGTCCACACAA 5'& ||| |.|. ||||||| &5' -GAAG----GGAT-GGTGTGT- 3' Cops6 mmu-miR-1199 beg:18 end:37 pic:3' GGCGCGCTGGCCCTGAGTCT 5'& |.|.| .|||.|||||| &5' --GTGTG--TGGGGCTCAGA 3' Cops6 mmu-miR-122 beg:48 end:69 pic:3' GTTTGTGGTAACA--GTGTGAGGT 5'& ||| || ||||.||| &5' -----ACCTGAGTACCACATTCC- 3' Cops6 mmu-miR-1274a beg:36 end:57 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& ||. || |||||||| &5' ----GCTGTTCCATGGACCTGA 3' Cops6 mmu-miR-150star beg:42 end:63 pic:3' GATAGGGGGT-CC-GGA--CATGGTC 5'& ..||| || ||| |||||| &5' -----TTCCATGGACCTGAGTACCA- 3' Cops6 mmu-miR-1968 beg:22 end:44 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& || . | || .|||||||. &5' -GTGGGGC-TCA--GACAGCTGT- 3' Cops6 mmu-miR-221 beg:73 end:97 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& |||||.|| .| |.|| ||| &5' GAAACTCATTA-ATAAAAGAGC- 3' Cops6 mmu-miR-296-5p beg:12 end:34 pic:3' TGTCCTAACTCCC-CCCCGGGA 5'& .|||| | | | |||||.| &5' --GGGATGGTGTGTGGGGCTC- 3' Cops6 mmu-miR-804 beg:65 end:85 pic:3' AGGTCCACTCCTTGTTGAGTGT 5'& || ||| ||||||. &5' -CCTTTAGAGA---AACTCAT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cops6; Csn6 mmu-miR-1 56 70 AUGUAUGAAGAAAUGUAAGGU :||| ||||||| --AGUACC-----ACAUUCCC Cops6; Csn6 mmu-miR-122a 32 70 UGUUUGU------GGUAA-------CA--GUGUGAGGU ||:||| |||| || ||||:||| UCAGACAGCUGUUCCAUGGACCUGAGUACCACAUUCCC Cops6; Csn6 mmu-miR-125a 19 37 GUGUCCAAUU-UCCCAGAGUCCCU ||| :||| ||||| ---UGGUGUGUGGGG-CUCAGA-- Cops6; Csn6 mmu-miR-127 24 58 -CGGUUCGAGUCUG-----------CCUAGGCU- |: ::|||||||| ||| |:|| UGUGGGGCUCAGACAGCUGUUCCAUGGACCUGAG Cops6; Csn6 mmu-miR-133a 35 55 -UGUCGACCAACUUCCCCUGGUU ||||||| ||||| GACAGCUGUUCCAU--GGACCU- Cops6; Csn6 mmu-miR-141 22 46 GGUAGAAA-UG-GUCUGUC-ACAAU :| | :| ||||||| |||| -UGUGUGGGGCUCAGACAGCUGUUC Cops6; Csn6 mmu-miR-149 4 30 -CCUCA--CUUCUGUGCCUCGGUCU- || ||||: |:|| |: |: UGGUUCUGGAAGGGAUGGUGUGUGGG Cops6; Csn6 mmu-miR-188 9 22 UGGGAGGUGGUACGUUCCCUAC- || |||||||| ----------CUGGAAGGGAUGG Cops6; Csn6 mmu-miR-193 14 37 GACCCUGAAACA---UCCG-GUCAA ||||: ||| :||| ||| -AGGGAUGGUGUGUGGGGCUCAGA- Cops6; Csn6 mmu-miR-194 24 49 AGGUGUACCUCAA------CGACAAUGU- :|||:| |||||| || ----UGUGGGGCUCAGACAGCUGUUCCAU Cops6; Csn6 mmu-miR-200a 25 46 UGUAGCAAUG-GUCUGUC-ACAAU :| :| ||||||| |||| ---GUGGGGCUCAGACAGCUGUUC Cops6; Csn6 mmu-miR-206 35 70 GGUGU-GUGAAGGAA-------------UGUAAGGU ||| | |||| | ||||||| -GACAGCUGUUCCAUGGACCUGAGUACCACAUUCCC Cops6; Csn6 mmu-miR-24 39 60 -GACAAGGACGACUU-GACUCGGU ||||||| ||:| |||||: GCUGUUCCA--UGGACCUGAGUA- Cops6; Csn6 mmu-miR-296 14 35 UGUCCUAACUCCC-CCCCGGGA :|||| | | | |||||:| -AGGGAUGGUGUGUGGGGCUCA Cops6; Csn6 mmu-miR-324-5p 5 22 GUGGUUACGGGAUC--CCCUACGC |::||:| |||||| ------GGUUCUGGAAGGGAUGG- Cops6; Csn6 mmu-miR-326 8 38 UGACC-UCCU---------UCCCGGGUCUCC |||| |||: :||||:|||| UCUGGAAGGGAUGGUGUGUGGGGCUCAGAC- Cops6; Csn6 mmu-miR-328 9 37 UGCCUUCCC-GUCUC---UCCCG-GUC- :||||||| ::| | :|||| ||| CUGGAAGGGAUGGUGUGUGGGGCUCAGA Cops6; Csn6 mmu-miR-329 10 29 UUUUUCCAAUCGACC-CACACAA ::|||| ||| ||||| UGGAAGGGA---UGGUGUGUGG- Cops6; Csn6 mmu-miR-342 9 32 CUGCCCACGCUAAAGACACACUCU- :|| | ||| ||||||:|: -CUGGAAGGGAUGG-UGUGUGGGGC Cops6; Csn6 mmu-miR-346 10 40 -UC-UCCGU-CCGUG-AGCCCG--UCUGU- :| ||| | ||: | |||| ||||| UGGAAGGGAUGGUGUGUGGGGCUCAGACAG Cops6; Csn6 mmu-miR-362 31 53 AAGUGUGGAUCCAAGGUUCCUAA ||| || |||||| ||| CUCAGACAGCUGUUCCAUGGAC- Cops6; Csn6 mmu-miR-380-3p 47 67 UUCUACACCUGG---UAUGAUGUAU |||||| :||| |||| -----AUGGACCUGAGUACCACAUU Cops6; Csn6 mmu-miR-409 26 69 UUCCC-----------CAAG-----UGG-CUCGU--UGUAAG :||| |||| ||| |||:| |||||| UGGGGCUCAGACAGCUGUUCCAUGGACCUGAGUACCACAUUCC Cops6; Csn6 mmu-miR-425 47 71 CCGCCUG------UGCUGUAAGGGCUA :|||| || |||||||| -AUGGACCUGAGUACCACAUUCCCU-- Cops6; Csn6 mmu-miR-434-5p 4 34 -CCAAG------UUUGGUACUCAGCUCGA- ||||| ::|: :|| || |:||| UGGUUCUGGAAGGGAUGGUGUGUGGGGCUC Cops6; Csn6 mmu-miR-615 10 38 UUC-UCCCU----CUGGGUCCGAGCCU- :| ||||| | : :||||| || UGGAAGGGAUGGUGUGUGGGGCUCAGAC Cops6; Csn6 mmu-miR-673 43 60 GAGGUUCCUGGUCUCGACACUC |||| ||||| |||: UUCCAUGGACCUGAGUA----- Cops6; Csn6 mmu-miR-674* 5 27 AACAAGACUCUACCCU-CGACAC- |||||| || |||| | |||| -GGUUCUG-GAAGGGAUGGUGUGU Cops6; Csn6 mmu-miR-678 30 62 GGAG---GUC----AGGAACGUGG-CUC-UG- ||| ||| ||| || ||| ||| || GCUCAGACAGCUGUUCCAUGGACCUGAGUACC Cops6; Csn6 mmu-miR-679 50 70 -UGGUUCUCAGUGGAGUGUCAGG- ||| |||| | |||| ||| GACCU-GAGUA--C-CACAUUCCC Cops6; Csn6 mmu-miR-683 14 52 CUCCUG-------UGUCGAA--UGUCGU-------CC- :|||: : :||| ||||| || AGGGAUGGUGUGUGGGGCUCAGACAGCUGUUCCAUGGA Cops6; Csn6 mmu-miR-702 1 33 CUCGCCCCA---UUUCCCA---------CCCGU | || :||||| |||| -UGAUGGUUCUGGAAGGGAUGGUGUGUGGGGCU Cops6; Csn6 mmu-miR-763 25 44 CGGUGACCAAGAAGG--GUCGACC ||| | || |||||| ----GUGGGGC-UCAGACAGCUGU Cops6; Csn6 mmu-miR-764-5p 48 63 UCCUCCUGUACACUCGUGG- |||| ||||:||| ---UGGACC--UGAGUACCA Cops6; Csn6 mmu-miR-1 62 69 AUGUAUGAAGAAA----------------------UGUAAGGU ||||||| GGGGCUCAGACAGCUGUUCCAUGGACCUGAGUACCACAUUCCC Cops6; Csn6 mmu-miR-206 62 69 ------------------GGUGUGUGAA-----GGAAUGUAAGGU |||:: || || ||||||| GGGGCUCAGACAGCUGUUCCAUGGACCUGAGUACC--ACAUUCCC Cops6; Csn6 mmu-miR-122a 45 69 uGUUUGUGGUAACA--GUGUGAGGu || : ||| || ||||:||| cCATGGACCTGAGTACCACATTCCc Cops6; Csn6 mmu-miR-125a 16 38 guguCCAAUUUCCCAGAGUCccu ||| : ||| ||||| ggatGGTGTGTGGGGCTCAGaca Cops6; Csn6 mmu-miR-127 25 56 CGGUUCGAGUCUG-----------CCUAGGCU |: ::|||||||| ||| |:|| GTGGGGCTCAGACAGCTGTTCCATGGACCTGA Cops6; Csn6 mmu-miR-133a 36 55 UGUCGACCAACUUCCCCUGGuu ||||||| | | ||||| ACAGCTGTTCCAT--GGACCtg Cops6; Csn6 mmu-miR-141 23 45 gguagaaaugGUCUGUC-ACAAu ||||||| |||| gtgtggggctCAGACAGCTGTTc Cops6; Csn6 mmu-miR-149 11 36 CC-UCACUUC--UGUGCCUCG-GUCU || || || | ::::||:|| |||| GGAAGGGATGGTGTGTGGGGCTCAGA Cops6; Csn6 mmu-miR-188 1 20 ugggaggugguACGUUCCCUAC || |||||||| --tgatggttcTGGAAGGGATG Cops6; Csn6 mmu-miR-193 13 37 gaCCCUG--AAACA-UCCG-GUCaa ||||: | ||| :||| ||| aaGGGATGGTGTGTGGGGCTCAGac Cops6; Csn6 mmu-miR-194 20 47 agguguACCUCAA------CGACAAUGU |||:| | |||||| || ggtgtgTGGGGCTCAGACAGCTGTTCCA Cops6; Csn6 mmu-miR-200a 23 45 uguagcaaugGUCUGUC-ACAAu ||||||| |||| gtgtggggctCAGACAGCTGTTc Cops6; Csn6 mmu-miR-24 40 62 GACAAGG-ACGACUUGACUC--GGU ||||||| || || ||||| ||| CTGTTCCATG--GACCTGAGTACCA Cops6; Csn6 mmu-miR-296 13 34 UGUCCUAACUC-CCCCCCGGGa | :|||| | | | |||||:| AAGGGATGGTGTGTGGGGCTCa Cops6; Csn6 mmu-miR-324-5p 1 22 gugguuaCGGGAUC--CCCUACgc |::||:| |||||| --tgatgGTTCTGGAAGGGATGgt Cops6; Csn6 mmu-miR-326 17 38 ugACCUC-CUUCCCGGGUCUcc ||| | | :||||:|||| gaTGGTGTGTGGGGCTCAGAca Cops6; Csn6 mmu-miR-342 8 30 cugCCCACGCUAAAGACACACUCu || | || | ||||||:| tctGGAAGGGA-TGGTGTGTGGGg Cops6; Csn6 mmu-miR-346 12 38 ucUCCGU-CCGUG-AGCCC--GUCUGU ||| | ||::: | ||| |||||| gaAGGGATGGTGTGTGGGGCTCAGACA Cops6; Csn6 mmu-miR-362 31 53 aAGUGUGGAUC--CAAGGUUCCUaa ||| || || |||||| ||| cTCAGAC--AGCTGTTCCATGGAcc Cops6; Csn6 mmu-miR-380-3p 37 66 uUCUAC-----ACCUGG---UAUGAUGUAu || || |||||| :||| |||| cAGCTGTTCCATGGACCTGAGTACCACATt Cops6; Csn6 mmu-miR-409 37 67 uUCCCCAAG-----UGG-CUC--GUUGUAAG || |||| ||| ||| | |||||| cAGCTGTTCCATGGACCTGAGTACCACATTC Cops6; Csn6 mmu-miR-425 49 72 CC--GCCU-GUGCUGUAAGGGcua || | || :|| |||||||| GGACCTGAGTACCACATTCCCttt Cops6; Csn6 mmu-miR-434-5p 5 32 CCAAG---UU---UGGUACUCAGCUCGA ||||| || |: :|| || |:||| GGTTCTGGAAGGGATGGTGTGTGGGGCT Cops6; Csn6 mmu-miR-615 13 36 UUCUC--CCUCUGGGUCCGAGCCU |||:| || | : :||||| || AAGGGATGGTGTGTGGGGCTCAGA Cops6; Csn6 mmu-miR-673 23 46 gAGGUUCCUGGUC--UCGACAcuc | :::|| :||| |||||| gTGTGGGGCTCAGACAGCTGTtcc Cops6; Csn6 mmu-miR-674* 4 25 AACAAGACUCUACCCU-CGACAC | |||||| || |||| | |||| TGGTTCTG-GAAGGGATGGTGTG Cops6; Csn6 mmu-miR-679 51 68 UGGUUCUCAGUGGAGUGUCAGG ||| |||| || |||| ||| ACC-TGAGT-AC--CACATTCC Cops6; Csn6 mmu-miR-683 26 43 cuCCUGUGUCGAAUGUCGUCc ||:| ||| ||||| | tgGGGCTCAG---ACAGCTGt Cops6; Csn6 mmu-miR-702 11 31 cucgCCCCAUUUCCCACCCgu ||| |:: | ||||| ggaaGGGATGGTGTGTGGGgc Cops6; Csn6 mmu-miR-763 22 43 cggugaccaagaaggGUCGACc |||||| tgtgtggggctcagaCAGCTGt Cops6; Csn6 mmu-miR-764-5p 45 61 uccuCCUGUACACUCGUGG |||| ||||:||| ccatGGAC--CTGAGTACC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cops6 RAID00085048 mmu-let-7c-5p miRNA MIMAT0000523 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00149980 mmu-miR-367-3p miRNA MIMAT0003181 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00214124 mmu-miR-7b-5p miRNA MIMAT0000678 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00266953 mmu-miR-505-3p miRNA MIMAT0003513 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00295526 mmu-miR-200a-3p miRNA MIMAT0000519 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00327329 mmu-miR-495-3p miRNA MIMAT0003456 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00339244 mmu-miR-199a-5p miRNA MIMAT0000229 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00469706 mmu-miR-23b-3p miRNA MIMAT0000125 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00630558 mmu-let-7a-5p miRNA MIMAT0000521 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00668024 mmu-miR-329-3p miRNA MIMAT0000567 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00677093 mmu-miR-6946-5p miRNA MIMAT0027792 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID00917184 mmu-miR-342-3p miRNA MIMAT0000590 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01010291 mmu-let-7i-5p miRNA MIMAT0000122 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01061489 mmu-let-7d-5p miRNA MIMAT0000383 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01062954 mmu-miR-32-5p miRNA MIMAT0000654 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01472222 mmu-miR-92a-3p miRNA MIMAT0000539 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01607960 mmu-miR-23a-3p miRNA MIMAT0000532 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01657345 mmu-miR-206-3p miRNA MIMAT0000239 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01682624 mmu-miR-212-3p miRNA MIMAT0000659 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01889827 mmu-let-7e-5p miRNA MIMAT0000524 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID01976099 mmu-miR-93-5p miRNA MIMAT0000540 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02131292 mmu-miR-873a-5p miRNA MIMAT0004936 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02230268 mmu-miR-92b-3p miRNA MIMAT0004899 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02292722 mmu-miR-363-3p miRNA MIMAT0000708 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02364993 mmu-let-7b-5p miRNA MIMAT0000522 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02406206 mmu-miR-1a-3p miRNA MIMAT0000123 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02452072 mmu-miR-3108-5p miRNA MIMAT0014947 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02460746 mmu-miR-132-3p miRNA MIMAT0000144 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02510042 mmu-miR-7a-5p miRNA MIMAT0000677 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02660916 mmu-miR-141-3p miRNA MIMAT0000153 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02685607 mmu-miR-98-5p miRNA MIMAT0000545 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02763121 mmu-miR-146b-5p miRNA MIMAT0003475 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02869121 mmu-miR-376b-3p miRNA MIMAT0001092 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID02883785 mmu-miR-33-5p miRNA MIMAT0000667 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03097562 mmu-miR-25-3p miRNA MIMAT0000652 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03245263 mmu-miR-375-3p miRNA MIMAT0000739 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03263913 mmu-let-7g-5p miRNA MIMAT0000121 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03273365 mmu-miR-146a-5p miRNA MIMAT0000158 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03389900 mmu-miR-142a-5p miRNA MIMAT0000154 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03591286 mmu-miR-1192 miRNA MIMAT0005850 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03643669 mmu-let-7f-5p miRNA MIMAT0000525 Cops6 mRNA 26893 Prediction 0.1828 Cops6 RAID03815545 mmu-miR-362-3p miRNA MIMAT0004684 Cops6 mRNA 26893 Prediction 0.1828