DNA & RNA Element - RepTar |
Gene Name | miRNA | Begin | End | Profile |
Ubxd1 | mmu-miR-1892 | beg:276 | end:287 | pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& |||||||| &5' --------------CCCCAAAT 3' |
Ubxd1 | mmu-let-7e | beg:108 | end:126 | pic:3' TTGATATGTTGGAGGATGGAGT 5'& |||| ||||||||| &5' ------ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-let-7f | beg:108 | end:126 | pic:3' TTGATATGTTAGATGATGGAGT 5'& |||| | ||||||| &5' ------ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-let-7g | beg:108 | end:126 | pic:3' TTGACATGTTTGATGATGGAGT 5'& ||||. | ||||||| &5' ------ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-miR-98 | beg:108 | end:126 | pic:3' TTGTTATGTTGAATGATGGAGT 5'& |||| | ||||||| &5' ------ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-miR-1961 | beg:116 | end:126 | pic:3' AAGATTGATGATGGAGT 5'& ||||||| &5' ---------CTACCTC- 3' |
Ubxd1 | mmu-miR-674star | beg:251 | end:262 | pic:3' AACAAGACTCTACCCTCGACAC 5'& |||||||| &5' -------------GGAGCTGT- 3' |
Ubxd1 | mmu-miR-770-3p | beg:7 | end:22 | pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& .|||. ||||||| &5' --GGCTT-------GGCCCAC- 3' |
Ubxd1 | mmu-miR-329 | beg:153 | end:171 | pic:3' TTTTTCCAATCG-AC-CCACACAA 5'& |.|| || ||||||| &5' --------TGGCTTGCGGTGTGT- 3' |
Ubxd1 | mmu-miR-362-3p | beg:156 | end:171 | pic:3' ACTTAGGAACTTGTCCACACAA 5'& |||| ||||||| &5' ------CTTGC---GGTGTGT- 3' |
Ubxd1 | mmu-miR-183 | beg:180 | end:195 | pic:3' TCACTTAAGATGGTCACGGTAT 5'& || | ||||||| &5' --------CT-CTGGTGCCAT- 3' |
Ubxd1 | mcmv-miR-M23-2 | beg:54 | end:75 | pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || .|| |.|| |.||||| &5' CC-TTTCCCTGA-GTCCCCA- 3' |
Ubxd1 | mmu-let-7a | beg:108 | end:126 | pic:3' TTGATATGTTGGATGATGGAGT 5'& |||| | ||||||| &5' ------ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-let-7astar | beg:78 | end:103 | pic:3' CCTTTCTGTCATCTAACATATC 5'& ||||.|||||||| .||| &5' GGAAGGACAGTAGTAGCAGTAG 3' |
Ubxd1 | mmu-let-7c | beg:108 | end:126 | pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||| | ||||||| &5' ------ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-let-7c-2star | beg:78 | end:103 | pic:3' CCTTTCTGTCATCTAACATATC 5'& ||||.|||||||| .||| &5' GGAAGGACAGTAGTAGCAGTAG 3' |
Ubxd1 | mmu-let-7i | beg:106 | end:126 | pic:3' TTGTCGTGTTTGATGATGGAGT 5'& || ||||. | ||||||| &5' ---AG-ACAAGGTCCTACCTC- 3' |
Ubxd1 | mmu-let-7istar | beg:80 | end:103 | pic:3' TCGTTCC-GTCATCGAACG-CGTC 5'& | |||| ||||||. || |.|| &5' -GGAAGGACAGTAGTA-GCAGTAG 3' |
Ubxd1 | mmu-miR-103 | beg:21 | end:45 | pic:3' AGTATCG-GGACATGTTACGACGA 5'& .|.|| || || . ||||||.| &5' --GTGGCTCCAGTCTCATGCTGTT 3' |
Ubxd1 | mmu-miR-107 | beg:21 | end:45 | pic:3' ACTATCG-GGACATGTTACGACGA 5'& .|.|| || || . ||||||.| &5' --GTGGCTCCAGTCTCATGCTGTT 3' |
Ubxd1 | mmu-miR-125bstar | beg:137 | end:163 | pic:3' TCCAGGGTTCTT---GGACTGAACA 5'& ||| ||.| ||||.|||| &5' AGGGA-CAGGCTTGTCCTGGCTTG- 3' |
Ubxd1 | mmu-miR-128 | beg:6 | end:27 | pic:3' TTTCTCTG-GCCAAGTGACACT 5'& ||.| .|| |||||||. &5' ----AGGCTTGGCCCACTGTGG 3' |
Ubxd1 | mmu-miR-139-5p | beg:6 | end:27 | pic:3' GACCTCTGTGCAC-GTGACATCT 5'& | ||.| .| ||||||.| &5' --GCAGGCTTGGCCCACTGTGG- 3' |
Ubxd1 | mmu-miR-1907 | beg:24 | end:46 | pic:3' TGGAGGTCTAGGAGACGACGAG 5'& |||||| ||. |||||.|| &5' --CTCCAG-TCTCATGCTGTTC 3' |
Ubxd1 | mmu-miR-1928 | beg:240 | end:260 | pic:3' CTCGACCGT--TACATCGA 5'& |||||||| ||| |||| &5' -AGCTGGCAGCATGGAGCT 3' |
Ubxd1 | mmu-miR-1944 | beg:192 | end:212 | pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||||. ||||||||. &5' --------CTTGGAGTGCAGCACAGG- 3' |
Ubxd1 | mmu-miR-195 | beg:26 | end:45 | pic:3' CGGTTATAAAGACACGACGAT 5'& |||.| || |||||.| &5' -CCAGTC--TCA-TGCTGTT- 3' |
Ubxd1 | mmu-miR-1962 | beg:14 | end:37 | pic:3' TACACAGGGT--CAC---GGTCGGAGA 5'& |||| ||| ||||.||| &5' ------CCCACTGTGGCTCCAGTCTC- 3' |
Ubxd1 | mmu-miR-1967 | beg:50 | end:75 | pic:3' CGTAGA-AGAGGGGTCCTAGGAGT 5'& |||. |.||||. | ||| || &5' -CATTCCTTTCCCT-GAGTCCCCA 3' |
Ubxd1 | mmu-miR-1968 | beg:118 | end:140 | pic:3' TCAGGTGGTAGGA-ATTGTCGACGT 5'& |.||| |||| |. .|||||| &5' ---CTACC-TCCTCTGTGGGCTGCA 3' |
Ubxd1 | mmu-miR-1983 | beg:195 | end:216 | pic:3' TCTTTTGTACGAGGTCCACTC 5'& .||. .|| || ||||||. &5' GGAGTGCA-GCA-CAGGTGG- 3' |
Ubxd1 | mmu-miR-2139 | beg:188 | end:208 | pic:3' CGTCAATGGTCCT-CGTCGCGTCGA 5'& |.||| | ||.||||| &5' -----TGCCATCTTGGAGTGCAGC- 3' |
Ubxd1 | mmu-miR-214star | beg:129 | end:150 | pic:3' CGTGTCGTTCACATCTGTCCGT 5'& | .| ||||| .||||||| &5' GGGCTGCAAG---GGACAGGC- 3' |
Ubxd1 | mmu-miR-21star | beg:23 | end:45 | pic:3' CTGTCG-GGT-AGCTGACGACAAC 5'& .|| ||| || ||||||| &5' ---GGCTCCAGTCTCATGCTGTT- 3' |
Ubxd1 | mmu-miR-24 | beg:52 | end:71 | pic:3' GACAAGGACGACTTGACTCGGT 5'& ||||| |||||.| &5' ---TTCCTTTCC--CTGAGTC- 3' |
Ubxd1 | mmu-miR-27a | beg:7 | end:27 | pic:3' CGCCTTGAATC-GGTGACACTT 5'& ..|||.| ||||||||. &5' ----GGCTTGGCCCACTGTGG- 3' |
Ubxd1 | mmu-miR-27b | beg:7 | end:27 | pic:3' CGTCTTGAATC-GGTGACACTT 5'& ||| .|||.| ||||||||. &5' -CAG-GCTTGGCCCACTGTGG- 3' |
Ubxd1 | mmu-miR-293star | beg:211 | end:233 | pic:3' GTTTTACAGTGTGTCAAACTCA 5'& ..|||| ||||||| || | &5' -GGAATG-CACACAGGCTGTG- 3' |
Ubxd1 | mmu-miR-298 | beg:111 | end:132 | pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& |||. |||||||||. &5' ---AAGGTCCTACCTCCTCTGT- 3' |
Ubxd1 | mmu-miR-30c-2star | beg:29 | end:49 | pic:3' TCTCATTTGTCGGAA------GAGGGTC 5'& |||.|| .||||| &5' --------CAGTCTCATGCTGTTCCCA- 3' |
Ubxd1 | mmu-miR-324-3p | beg:243 | end:262 | pic:3' TCGTCGTGGACCCCGTCACC 5'& .|||||| ||| || || &5' GGCAGCA--TGGAGCTGT-- 3' |
Ubxd1 | mmu-miR-3473 | beg:182 | end:198 | pic:3' CCGACT-CGGTAGAGAGGT 5'& |||. |||||||. &5' --CTGGTGCCATCTT---- 3' |
Ubxd1 | mmu-miR-377 | beg:155 | end:173 | pic:3' TGTTTTCAACGGAA---ACACACTA 5'& ||.| ||||||. &5' ---------GCTTGCGGTGTGTGG- 3' |
Ubxd1 | mmu-miR-450a-3p | beg:34 | end:50 | pic:3' TACTTACGTTTCGTAGGGGTTA 5'& |||| .|.||||| &5' ----ATGCT----GTTCCCAA- 3' |
Ubxd1 | mmu-miR-450b-3p | beg:33 | end:50 | pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||||| ||||||||| &5' ---CATGC----TGTTCCCAA- 3' |
Ubxd1 | mmu-miR-466j | beg:205 | end:226 | pic:3' AATGTGTGTACGTGTACGTGTGT 5'& .|||| .|| | ||||||||| &5' --GCACAGGTGGA-ATGCACACA 3' |
Ubxd1 | mmu-miR-485 | beg:16 | end:37 | pic:3' CTTAAGTAGTGCCG--GTCGGAGA 5'& || ..||| |||.||| &5' -----CACTGTGGCTCCAGTCTC- 3' |
Ubxd1 | mmu-miR-509-5p | beg:183 | end:203 | pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||. |||||. .||||||. &5' -TGG-TGCCATC--TTGGAGTG 3' |
Ubxd1 | mmu-miR-542-5p | beg:50 | end:69 | pic:3' AGCACTGTACTACTAGGGGCTC 5'& ||| ||||.||| &5' ------CATTCCTTTCCCTGAG 3' |
Ubxd1 | mmu-miR-652 | beg:177 | end:195 | pic:3' GTGTTGGGATCACCGCGGTAA 5'& .|.|||| |||.||||| &5' --TAGCCCTC-TGGTGCCAT- 3' |
Ubxd1 | mmu-miR-682 | beg:243 | end:263 | pic:3' GTCTGAAGTGACACTGACGTC 5'& |.| || || .|||.| &5' --GGCAGCA-TGGAGCTGTA- 3' |
Ubxd1 | mmu-miR-683 | beg:81 | end:103 | pic:3' CTCCTGT-GTCGAATGTCGTCC 5'& |||||| .||. .|||.|| &5' -AGGACAGTAGTA-GCAGTAG- 3' |
Ubxd1 | mmu-miR-693-5p | beg:10 | end:29 | pic:3' CTTTTGAAAGCCT----ACACCGAC 5'& |.|| ||||||| &5' --------TTGGCCCACTGTGGCT- 3' |
Ubxd1 | mmu-miR-709 | beg:114 | end:132 | pic:3' AGGA-GGACGGAGACGGAGG 5'& |||| ||| ||||||. &5' TCCTACCT-CCTCTGT---- 3' |
Ubxd1 | mmu-miR-712 | beg:69 | end:88 | pic:3' CCATGG-CGGGCCCACTTCCTC 5'& || || |||||| &5' ----CCAGCAATAG-GAAGGA- 3' |
Ubxd1 | mmu-miR-715 | beg:240 | end:258 | pic:3' GTGCGCCCCCACACGTGCCTC 5'& || || |||.|||| &5' ---GCTGGCA---GCATGGAG 3' |
Ubxd1 | mmu-miR-744star | beg:234 | end:253 | pic:3' TCCAACTCCAATC-ACCGTTGTC 5'& ||| || |||||.|| &5' -----GAGAC-AGCTGGCAGCA- 3' |
Ubxd1 | mmu-miR-760 | beg:58 | end:77 | pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||||.. || ||| ||| &5' TCCCTG-AGTCCCC-AGC-- 3' |
Ubxd1 | mmu-miR-764-5p | beg:77 | end:98 | pic:3' TCC-TCCTGTACACTCGTGG 5'& ||| |||||| || ||.| | &5' AGGAAGGACA-GT-AGTAGC 3' |
Ubxd1 | mmu-miR-877 | beg:113 | end:131 | pic:3' GGGACGCGGTAGAGGAGATG 5'& |. |.| |||||||. &5' ----GTCCTACCTCCTCTG- 3' |
Ubxd1 | mmu-miR-877 | beg:178 | end:205 | pic:3' GGGA---CGCGGTAGAGGAG-ATG 5'& |||| |.|||||||. |.| &5' CCCTCTGGTGCCATCTTGGAGTGC 3' |
Ubxd1 | mmu-miR-879 | beg:247 | end:269 | pic:3' CCGAATCTCGATATTC-GGAGA 5'& || |.|||||.||| ||| &5' -GCATGGAGCTGTAATTCCT-- 3' |
Ubxd1 | mmu-miR-466h | beg:206 | end:226 | pic:3' ATGTGTGTTCGTG-TACGTGTGT 5'& ||||.|.. ||||||||| &5' ----CACAGGTGGAATGCACACA 3' |