DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 67345 Herc4 cguuccgucaccgGACAUGUCa |||||||| cauuaauacuaaaCUGUACAGa 2 10 137 158 [mm9:10:62780373-62780394:+] 0.5589 145 7 -13.28 -0.9541 MIMAT0000129 mmu-miR-30a* 67345 Herc4 cgacGUUUGUAGGC-UGACUUUc :|| | | | ||||||| ggguUAAUCCCCAGCACUGAAAg 2 19 366 388 [mm9:10:62736803-62736825:+] 0.4959 145 7 -14.87 -0.1032 MIMAT0000129 mmu-miR-30a* 67345 Herc4 cgacguUUGUAGGCUGACUUUc |:| | ||||||| uagcuuAGCCUGGUACUGAAAa 2 17 571 592 [mm9:10:62737008-62737029:+] 0.5083 144 7 -10.43 -0.9758 MIMAT0004525 mmu-miR-99b* 67345 Herc4 gccUGGGUGUCUGUGCUCGAAc |::: : ||: :|||||| auuAUUUUUUGAU-UGAGCUUc 2 20 674 694 [mm9:10:62737111-62737131:+] 0.5145 129 6 -10.10 -0.1542 MIMAT0000137 mmu-miR-126-5p 67345 Herc4 gcgcaUGGUUUU----CAUUAUUac |: |||| ||||||| uguaaAUAAAAAUUUUGUAAUAAaa 3 17 351 375 [mm9:10:62780587-62780611:+] 0.7236 127 0 -5.91 -0.5679 MIMAT0004534 mmu-miR-145* 67345 Herc4 guucuugucauaaagGUCCUUa |||||| uuaaaguuuuacucaCAGGAAu 2 8 199 220 [mm9:10:62780435-62780456:+] 0.6701 120 6 -11.75 -0.1263 MIMAT0004537 mmu-miR-154* 67345 Herc4 uuAUCCAGUUGGCACAU-ACUAa | | ||| : |||| |||| aaUUGUUCACUACUGUACUGAUg 2 21 91 113 [mm9:10:62780327-62780349:+] 0.6122 120 0 -6.85 -1.0671 MIMAT0000230 mmu-miR-199a-3p 67345 Herc4 auUGGUUACACGUCUGAUGACa |: ||| ||: ||||||| uuAUAAAU-UGUUCACUACUGu 2 21 86 106 [mm9:10:62780322-62780342:+] 0.6122 154 7 -13.38 -1.0297 MIMAT0000234 mmu-miR-201 67345 Herc4 uucUUGUUACGGA---AUGACUCAu :|||:||: | |||||||| agaGACAGUGUAUAAAUACUGAGUu 2 20 435 459 [mm9:10:62736872-62736896:+] 0.5083 158 7 -20.41 -1.0224 MIMAT0004546 mmu-miR-202-5p 67345 Herc4 uuucUUC-AUAUACGUAUCCUu ||| | || || |||| auuaAAGUUUUACUCACAGGAa 2 18 198 219 [mm9:10:62780434-62780455:+] 0.6701 120 0 -8.84 -0.1097 MIMAT0004547 mmu-miR-203* 67345 Herc4 acaACUUGACAGUUCUUGGUGa | |||||| |||||||: uacUAAACUGUACAGAACCAUg 2 20 143 164 [mm9:10:62780379-62780400:+] 0.5589 155 0 -18.42 -0.1168 MIMAT0000249 mmu-miR-30e* 67345 Herc4 cgacAUUUGUAGGC-UGACUUUc ||| | | | ||||||| ggguUAAUCCCCAGCACUGAAAg 2 19 366 388 [mm9:10:62736803-62736825:+] 0.4959 149 7 -16.15 -0.1032 MIMAT0000249 mmu-miR-30e* 67345 Herc4 cgacAUUUGUAGGCUGACUUUc | |:| | ||||||| uagcUUAGCCUGGUACUGAAAa 2 19 571 592 [mm9:10:62737008-62737029:+] 0.5083 146 7 -10.43 -0.9758 MIMAT0000378 mmu-miR-300 67345 Herc4 cuUCUCUCGAA--CGGGAACGUAu ||: | :|| | :|||||| acAGGAAUUUUAAGAGUUUGCAUa 2 21 213 236 [mm9:10:62780449-62780472:+] 0.6701 131 6 -12.44 -0.1651 MIMAT0004579 mmu-miR-302a* 67345 Herc4 cguucauguuggugcAAAUUCa |||||| uuuacucacaggaauUUUAAGa 2 8 206 227 [mm9:10:62780442-62780463:+] 0.6701 120 6 -7.40 -0.2132 MIMAT0004580 mmu-miR-34c* 67345 Herc4 ggaccgacacaccaAUCACUaa |||||| auuuuguaauaaaaUAGUGAca 3 9 362 383 [mm9:10:62780598-62780619:+] 0.7579 120 0 -6.21 -0.9598 MIMAT0004581 mmu-miR-34b-3p 67345 Herc4 cuACCGUCACCUCAAUCACUaa | |:| | | |||||| uuUUGUAAU-AAAAUAGUGAca 3 21 363 383 [mm9:10:62780599-62780619:+] 0.7579 122 0 -5.40 -0.9535 MIMAT0004624 mmu-miR-15a* 67345 Herc4 acUCCGUCGUG-UCAUACCGGAc :|| | || | ||||||| ggGGGAAAGACUACGAUGGCCUg 2 21 299 321 [mm9:10:62780535-62780557:+] 0.6701 147 7 -24.06 -0.3682 MIMAT0004625 mmu-miR-16* 67345 Herc4 agUC-GUCGUGUCAGUUAUGACc || |||:::| | ||||||| agAGACAGUGUA-UAAAUACUGa 2 21 435 456 [mm9:10:62736872-62736893:+] 0.5083 157 7 -15.12 -0.9432 MIMAT0004628 mmu-miR-21* 67345 Herc4 cugUCGGGUAGCUGACGACAAc ||| : | : ||||||| aaaAGCAAGGCUG-UGCUGUUu 2 20 389 409 [mm9:10:62736826-62736846:+] 0.4959 141 7 -13.05 -0.2548 MIMAT0004633 mmu-miR-27a* 67345 Herc4 acgaguguucgucgaUUCGGGa |||||| cuacuguacugaugaAAGCCCa 2 8 100 121 [mm9:10:62780336-62780357:+] 0.6122 120 6 -11.09 -0.3329 MIMAT0004634 mmu-miR-31* 67345 Herc4 cuaccguUAUACAACCGU-AUCGu |||||| ||| |||| uuagaacAUAUGU--GCAGUAGCu 2 17 554 575 [mm9:10:62736991-62737012:+] 0.5083 121 0 -11.02 -0.3076 MIMAT0004635 mmu-miR-92a* 67345 Herc4 cauuacgGUGG-UUAGGGGUGga |||| ||||||| uccccagCACCUUUUCCCCACaa 3 16 254 276 [mm9:10:62736691-62736713:+] 0.4952 130 0 -22.33 -0.1612 MIMAT0004636 mmu-miR-93* 67345 Herc4 gcccuucACGAUCGAGUCGUca ||: | :|||||| uuucucuUGUGAAUUCAGCAca 3 16 38 59 [mm9:10:62780274-62780295:+] 0.6356 131 0 -10.92 -0.1233 MIMAT0004647 mmu-miR-338-5p 67345 Herc4 guGAGUCGUGGUCCUAUAACAa |||| :|| | :|||||| ucCUCA-UACAA--GUAUUGUg 2 21 174 192 [mm9:10:62780410-62780428:+] 0.6145 135 6 -11.22 -0.1492 MIMAT0004647 mmu-miR-338-5p 67345 Herc4 gugagucgugguccuAUAACAa |||||| ucuuuuuacacugauUAUUGUc 2 8 693 714 [mm9:10:62737130-62737151:+] 0.5208 120 6 -9.37 -0.1066 MIMAT0000605 mmu-miR-350 67345 Herc4 cuuucacauacccgaAACACUu |||||| auccucauacaaguaUUGUGAa 2 8 173 194 [mm9:10:62780409-62780430:+] 0.6145 120 6 -7.82 -0.2382 MIMAT0004659 mmu-miR-10a* 67345 Herc4 auAAGGGGAUCUAUGCUUAAAc ||:: || | | |||||| agUUUUACU-CACAGGAAUUUu 2 21 203 223 [mm9:10:62780439-62780459:+] 0.6701 122 6 -6.28 -0.1857 MIMAT0005444 mmu-miR-218-2* 67345 Herc4 gcgccacGAACUGUCUUGGUAc || |||||||||| uacuaaaCUGUACAGAACCAUg 2 16 143 164 [mm9:10:62780379-62780400:+] 0.5589 159 7 -21.47 -1.0596 MIMAT0004666 mmu-miR-33* 67345 Herc4 cacuacgugacaccUUUGUAAc ||||||| auugucuugaaaauAAACAUUu 2 9 709 730 [mm9:10:62737146-62737167:+] 0.5208 140 7 -5.57 -1.2777 MIMAT0000672 mmu-miR-199b* 67345 Herc4 cuugUCCAUCAGAUUUGUGACcc || | |:| |||||| auugAGCUUCUUUUUACACUGau 3 20 685 707 [mm9:10:62737122-62737144:+] 0.5145 131 0 -10.84 -0.1617 MIMAT0004667 mmu-miR-199b 67345 Herc4 auUGGUUACACGUCUGAUGACa |: ||| ||: ||||||| uuAUAAAU-UGUUCACUACUGu 2 21 86 106 [mm9:10:62780322-62780342:+] 0.6122 154 7 -13.38 -1.0297 MIMAT0004691 mmu-miR-382* 67345 Herc4 uuuUUCACAACAGGCACUUAcu |||| || |||||| uacAAGUAUU----GUGAAUac 3 20 180 197 [mm9:10:62780416-62780433:+] 0.6145 126 0 -7.76 -0.1956 MIMAT0004746 mmu-miR-409-5p 67345 Herc4 uacGUUUCAACGAGCCCAUUGGa | :|||| : ||||||| auaCUGAGUUAAGUUGGUAACCa 2 21 450 472 [mm9:10:62736887-62736909:+] 0.5083 152 7 -13.54 -0.9311 MIMAT0001090 mmu-miR-409-3p 67345 Herc4 uccccaaguggcucgUUGUAAg |||||| auugucuugaaaauaAACAUUu 2 8 709 730 [mm9:10:62737146-62737167:+] 0.5208 120 6 -6.43 -0.3116 MIMAT0002108 mmu-miR-467a-1* 67345 Herc4 cacauccacacacaUACAUAUa ||||||| agagcauuggagaaAUGUAUAc 2 9 50 71 [mm9:10:62736487-62736508:+] 0.5082 140 7 -5.13 -0.3990 MIMAT0002109 mmu-miR-468 67345 Herc4 guCUG-UGUGCGUGUAGUCAGUAu ||: :| :|| || ||||||| acGAUGGCCUGCCCA-CAGUCAUu 2 22 311 333 [mm9:10:62780547-62780569:+] 0.6701 154 7 -17.01 -0.9539 MIMAT0002111 mmu-miR-470 67345 Herc4 ugaguggucacggucaGGUUCUu |||||| cuauacaauuaauuagCCAAGAa 2 8 511 533 [mm9:10:62736948-62736970:+] 0.5083 120 6 -13.99 -0.1120 MIMAT0003166 mmu-miR-546 67345 Herc4 cugaggcaCGGUGGUa ||||||| caggauugGCCACCAu 2 9 482 497 [mm9:10:62736919-62736934:+] 0.5083 140 7 -17.48 -0.4397 MIMAT0004790 mmu-miR-503* 67345 Herc4 gguccgUCAC-CUUUGUUAUGAg | || | | :|||||| uuaaaaACUGUGCAUUAAUACUa 2 17 125 147 [mm9:10:62780361-62780383:+] 0.5589 131 6 -10.15 -0.1064 MIMAT0003732 mmu-miR-668 67345 Herc4 ccaucacccggcucggcUCACUGu |||||| aaauuuuguaauaaaauAGUGACa 2 8 360 383 [mm9:10:62780596-62780619:+] 0.7579 120 6 -10.70 -1.0499 MIMAT0004822 mmu-miR-770-5p 67345 Herc4 gcaccgGGUCUGUGCA-CCACGa || ||:::|| ||||| aaauuaCCUGAUGUGUGGGUGCa 2 17 243 265 [mm9:10:62780479-62780501:+] 0.6701 124 0 -20.01 -0.8289 MIMAT0003736 mmu-miR-670 67345 Herc4 aaguggUGUAU-GUGAGUC-CCUa | ||| |:||||| ||| accuggAGAUAUCGCUCAGUGGAa 2 17 193 216 [mm9:10:62736630-62736653:+] 0.4812 123 0 -17.86 -0.3409 MIMAT0003897 mmu-miR-759 67345 Herc4 caguUUUAACAAACGUGA-GACg |||||||| |||| ||| uuauAAAUUGUU--CACUACUGu 2 19 86 106 [mm9:10:62780322-62780342:+] 0.6122 131 0 -14.40 -0.9783 MIMAT0003451 mmu-miR-677 67345 Herc4 agucuucgauuaguaGUGACUu |||||| uugagcuucuuuuuaCACUGAu 2 8 686 707 [mm9:10:62737123-62737144:+] 0.5145 120 6 -12.43 -0.1955 MIMAT0003455 mmu-miR-679 67345 Herc4 ugGUUCUCAGUGGAGUGUCAGg |:| :| | | ||||||| uaCGAUGGCCUGCCCACAGUCa 2 21 310 331 [mm9:10:62780546-62780567:+] 0.6701 152 7 -19.38 -0.9218 MIMAT0003466 mmu-miR-687 67345 Herc4 aguaacgacGUAA-GGUCCU-AUc |||| |||||| || auacccaaaCAUUCCCAGGACUAa 2 14 68 91 [mm9:10:62736505-62736528:+] 0.5082 120 0 -13.64 -0.4310 MIMAT0003470 mmu-miR-691 67345 Herc4 aaaagacggagagaaGUCCUUa |||||| uuaaaguuuuacucaCAGGAAu 2 8 199 220 [mm9:10:62780435-62780456:+] 0.6701 120 6 -13.27 -0.1238 MIMAT0003474 mmu-miR-694 67345 Herc4 gaAGUCCGUUGUAAAAGUc |:| || |:|||||:| --UUAAGC-AUAUUUUUAa 2 18 1 16 [mm9:10:62736438-62736453:+] 0.5041 139 0 -6.19 -0.1256 MIMAT0003478 mmu-miR-467b* 67345 Herc4 cacaaccacacacaUACAUAUa ||||||| agagcauuggagaaAUGUAUAc 2 9 50 71 [mm9:10:62736487-62736508:+] 0.5082 140 7 -7.47 -0.3990 MIMAT0003487 mmu-miR-697 67345 Herc4 agagguguCCUGG--UCCUACAa ||||| ||||||| auagugguGGACCUGAGGAUGUu 2 14 91 113 [mm9:10:62736528-62736550:+] 0.4840 152 7 -19.31 -0.1802 MIMAT0003496 mmu-miR-706 67345 Herc4 aaaaaacucuguCCCAAAGAGa | ||||||| caaaaaccacucGUGUUUCUCu 2 11 23 44 [mm9:10:62780259-62780280:+] 0.6356 142 7 -10.82 -1.0684 MIMAT0003498 mmu-miR-708* 67345 Herc4 gaUCUUCGAGUGUCAGA--UCAAc ||||||| || |||| |||| caAGAAGCU-AC-GUCUAAAGUUu 2 21 528 549 [mm9:10:62736965-62736986:+] 0.5083 120 0 -17.60 -0.2719 MIMAT0003502 mmu-miR-712 67345 Herc4 ccauggcgggcccaCUUCCUc |||||| ccccacaaaaaaaaGAAGGAa 2 8 269 289 [mm9:10:62736706-62736726:+] 0.4905 120 6 -8.88 -0.1184 MIMAT0003507 mmu-miR-500 67345 Herc4 acuUGGG-AACGGGUCCACGUAa |||: ||: ::||||||| auuACCUGAUGUGUGGGUGCAUg 2 20 245 267 [mm9:10:62780481-62780503:+] 0.6701 154 7 -18.86 -0.4672 MIMAT0003507 mmu-miR-500 67345 Herc4 acuugggaacgggucCACGUAa |||||| ccaaaauuaaaaacuGUGCAUu 2 8 119 140 [mm9:10:62780355-62780376:+] 0.5589 120 6 -11.12 -0.1193 MIMAT0003509 mmu-miR-501-3p 67345 Herc4 guUUA--GGA--ACGGGCCCACGUAa ||| ||| ||: :|||||||| gaAAUUACCUGAUGUGUGGGUGCAUg 2 21 242 267 [mm9:10:62780478-62780503:+] 0.6701 158 7 -23.81 -0.4672 MIMAT0003509 mmu-miR-501-3p 67345 Herc4 guuuaggaacgggccCACGUAa |||||| ccaaaauuaaaaacuGUGCAUu 2 8 119 140 [mm9:10:62780355-62780376:+] 0.5589 120 6 -9.64 -0.1193 MIMAT0004210 mmu-miR-804 67345 Herc4 agguccacuccuuguUGAGUGu |||||| auacauuaaaguuuuACUCACa 2 8 194 215 [mm9:10:62780430-62780451:+] 0.6701 120 6 -11.47 -0.1882 MIMAT0004838 mmu-miR-742* 67345 Herc4 acuAAUCGUUG-GUACAC-UCAu |||| ||| :||||| ||| cuuUUAG-AACAUAUGUGCAGUa 2 19 551 572 [mm9:10:62736988-62737009:+] 0.5083 127 0 -14.46 -0.9674 MIMAT0004238 mmu-miR-743a 67345 Herc4 agAUGAGUCGAACCACAGAAag ||| | | || |||||| uuUACACUGAUUAUUGUCUUga 3 21 697 718 [mm9:10:62737134-62737155:+] 0.5208 140 0 -8.32 -0.3226 MIMAT0004840 mmu-miR-743b-3p 67345 Herc4 agAUAAGUCG-UACU-ACAGAAag | | || : || | |||||| uuUUUACACUGAUUAUUGUCUUga 3 21 695 718 [mm9:10:62737132-62737155:+] 0.5208 126 0 -7.01 -0.3253 MIMAT0004843 mmu-miR-879* 67345 Herc4 ggcuuuCGAACUUCGGU-AUUCg |:| || |||| |||| uucauuGUUGGAUGCCAUUAAGa 2 17 415 437 [mm9:10:62736852-62736874:+] 0.5069 124 0 -13.26 -0.6031 MIMAT0004883 mmu-miR-466g 67345 Herc4 acacacacguacacAGACAUa |||||| cagugagaguuacuUCUGUAa 2 8 58 78 [mm9:10:62780294-62780314:+] 0.6356 120 6 -8.95 -0.1167 MIMAT0004887 mmu-miR-467d* 67345 Herc4 cacauccacacacaUACAUAUa ||||||| agagcauuggagaaAUGUAUAc 2 9 50 71 [mm9:10:62736487-62736508:+] 0.5082 140 7 -5.13 -0.3990 MIMAT0004888 mmu-miR-493 67345 Herc4 ggACCGUGUGUCAUC-CUGGAAGu || |:| | ||| ||| ||| uuUGUAAUAAAAUAGUGACAUUCa 2 22 364 387 [mm9:10:62780600-62780623:+] 0.7579 128 0 -11.47 -0.1104 MIMAT0005291 mmu-miR-582-5p 67345 Herc4 ucauugaccaacuugUUGACAu |||||| aagcccaaaauuaaaAACUGUg 2 8 115 136 [mm9:10:62780351-62780372:+] 0.5589 120 6 -7.50 -0.1140 MIMAT0005294 mmu-miR-467e* 67345 Herc4 uauauccacacacaUACAUAUa ||||||| agagcauuggagaaAUGUAUAc 2 9 50 71 [mm9:10:62736487-62736508:+] 0.5082 140 7 -5.13 -0.3990 MIMAT0005836 mmu-miR-1186 67345 Herc4 guACGGAAAUUA-AGGUCGUGAg || ||||| |||||||| ugUGGGGUUAAUCCCCAGCACUg 2 21 362 384 [mm9:10:62736799-62736821:+] 0.4959 159 7 -17.69 -0.1755 MIMAT0005844 mmu-miR-466f 67345 Herc4 uguacGUGUACGUGUG-UGUGCa ::| ||| :|| ||||| uagacUGCUUGCCUACUACACGg 2 18 336 358 [mm9:10:62736773-62736795:+] 0.4959 121 0 -17.37 -0.2493 MIMAT0005846 mmu-miR-467f 67345 Herc4 acauccacacacaCACAUAUa ||||||| ccauuaagagacaGUGUAUAa 2 9 429 449 [mm9:10:62736866-62736886:+] 0.5083 140 7 -7.06 -1.0085 MIMAT0005851 mmu-miR-1193 67345 Herc4 cuAUCAUUUUGCCCACUGGAu || |||||: ||||| | ugUAAUAAAAU-AGUGACAUu 2 20 366 385 [mm9:10:62780602-62780621:+] 0.7579 129 0 -9.32 -0.1295 MIMAT0005851 mmu-miR-1193 67345 Herc4 cuaUCAUUUUGCCCA-CUGGAu | ||| | ||| ||||| aggACUAAUAGUGGUGGACCUg 2 19 84 105 [mm9:10:62736521-62736542:+] 0.4840 122 0 -15.12 -0.3852 MIMAT0007871 mmu-miR-1892 67345 Herc4 uaggagggagggcagGGGUUUa |||||| cuguacugaugaaagCCCAAAa 2 8 103 124 [mm9:10:62780339-62780360:+] 0.5589 120 6 -10.05 -0.3766 MIMAT0009396 mmu-miR-1933-5p 67345 Herc4 uuuGAUUCUGGCUUGUGGUACUGa ||::|| |::| |||||| gcuCUGGGA--AAGUAACAUGACa 2 22 599 620 [mm9:10:62737036-62737057:+] 0.5083 126 6 -15.45 -0.1677 MIMAT0009419 mmu-miR-669m 67345 Herc4 uauacaAACACAC-CUACAUAUa ||| | | ||||||| agagcaUUG-GAGAAAUGUAUAc 2 17 50 71 [mm9:10:62736487-62736508:+] 0.5082 141 7 -6.61 -0.3960 MIMAT0009433 mmu-miR-1960 67345 Herc4 ucgggagaagauuGUCGUGACc |||||||| ugggguuaaucccCAGCACUGa 2 10 364 385 [mm9:10:62736801-62736822:+] 0.4959 145 7 -17.36 -0.2605 MIMAT0009440 mmu-miR-1967 67345 Herc4 cguagaagagggguccUAGGAGu |||||| gaaccaugaauuguccAUCCUCa 2 8 157 179 [mm9:10:62780393-62780415:+] 0.5589 120 6 -16.27 -0.1650 MIMAT0009442 mmu-miR-1969 67345 Herc4 uggguACAAUUUCAGAGGUAGAa || | | |:|||||:| ucauuUGAUUAUUUUUCCAUUUu 2 19 329 351 [mm9:10:62780565-62780587:+] 0.6701 138 0 -12.04 -0.1133 MIMAT0009444 mmu-miR-1970 67345 Herc4 guuucggauagggGUCACUGUGu :|||||||: uuuuguaauaaaaUAGUGACAUu 2 11 363 385 [mm9:10:62780599-62780621:+] 0.7579 130 0 -13.51 -0.3161 MIMAT0009445 mmu-miR-1274a 67345 Herc4 accgCGGACUUGUCCCUGGACu |::|| : |||||||| gaaaGUUUG--UUGGGACCUGg 2 19 179 198 [mm9:10:62736616-62736635:+] 0.4627 147 7 -23.61 -0.2335 MIMAT0009445 mmu-miR-1274a 67345 Herc4 accgcggacUUGUC-CCUGGACu |:::| ||||||| aggacuaauAGUGGUGGACCUGa 2 14 84 106 [mm9:10:62736521-62736543:+] 0.4840 144 7 -22.30 -0.8032 MIMAT0009457 mmu-miR-1839-3p 67345 Herc4 cgACA--ACCAU-CUAUUCAUCCAGa ||| || || ||| ||||||| cuUGUACUGCUAUUAUAUGUAGGUCc 2 22 306 331 [mm9:10:62736743-62736768:+] 0.4959 159 7 -14.49 -0.4665 MIMAT0011210 mmu-miR-2134 67345 Herc4 cguggggcaaagGGUUCUg |||||| acaauuaauuagCCAAGAa 2 8 515 533 [mm9:10:62736952-62736970:+] 0.5083 120 6 -9.45 -0.1143 MIMAT0011222 mmu-miR-2146 67345 Herc4 guGU-ACCUUGGGAAGAGGUg || | || : :||:|||| guCAUUUGAUUAUUUUUCCAu 2 19 328 348 [mm9:10:62780564-62780584:+] 0.6701 133 0 -12.57 -0.1254 MIMAT0015644 mmu-miR-1186b 67345 Herc4 caccacGUACGGAAAUUAGGGu | || ||||||||| caaggcCCUGGGUUUAAUCCCc 2 17 237 258 [mm9:10:62736674-62736695:+] 0.4998 156 7 -14.48 -0.2799 MIMAT0015644 mmu-miR-1186b 67345 Herc4 caCCACGUACGGAAAUUAGGGu || ::|| |||||||| cgGGACUGUGGGGUUAAUCCCc 2 21 356 377 [mm9:10:62736793-62736814:+] 0.4959 152 7 -14.58 -0.1343 MIMAT0015646 mmu-miR-3474 67345 Herc4 cuUAGGUGCAGAG-GAGGGUCCc ||: | ||:|: ||| |||| acAUUAAAGUUUUACUCACAGGa 2 21 196 218 [mm9:10:62780432-62780454:+] 0.6701 131 0 -13.63 -0.1109 MIMAT0015646 mmu-miR-3474 67345 Herc4 cuuaggugcagagGAGGGUCCc :||||||| guauacccaaacaUUCCCAGGa 2 10 66 87 [mm9:10:62736503-62736524:+] 0.5082 141 7 -18.94 -0.9237 MIMAT0000123 mmu-miR-1 67345 Herc4 uauguaugaagaAAUGUAAGgu | |||||| guaauaaaauagUGACAUUCag 3 11 367 388 [mm9:10:62780603-62780624:+] 0.7579 122 0 -6.37 -0.4936 MIMAT0000123 mmu-miR-1 67345 Herc4 uaUGUAUGAAGAAAUGUAAGGu |::||: | ||||||| aaAUGUAUACCCAAACAUUCCc 2 21 62 83 [mm9:10:62736499-62736520:+] 0.5082 148 7 -13.87 -0.3582 MIMAT0000126 mmu-miR-27b 67345 Herc4 cgucUUGAAUCGGUGACACuu || ||| |||||| cccaAAAUUAAAAACUGUGca 3 18 118 138 [mm9:10:62780354-62780374:+] 0.5589 133 0 -9.77 -0.3069 MIMAT0000140 mmu-miR-128 67345 Herc4 uuucucuggccaagUGACACu |||||| gcccaaaauuaaaaACUGUGc 2 8 117 137 [mm9:10:62780353-62780373:+] 0.5589 120 6 -7.85 -0.2191 MIMAT0000151 mmu-miR-140 67345 Herc4 gaugguaucccaUUUUGGUGAc ||||||||| cuguuuaguacaAAAACCACUc 2 11 13 34 [mm9:10:62780249-62780270:+] 0.5961 150 7 -14.12 -0.7780 MIMAT0000153 mmu-miR-141 67345 Herc4 gguagaAAUGGUCUGUCACAAu ||: :| ||||||| guuaagUUGGUAACCAGUGUUg 2 17 457 478 [mm9:10:62736894-62736915:+] 0.5083 148 7 -13.10 -0.1604 MIMAT0000155 mmu-miR-142-3p 67345 Herc4 agguauuucauccuuuGUGAUGu |||||| uuacuuauaaauuguuCACUACu 2 8 82 104 [mm9:10:62780318-62780340:+] 0.6122 120 6 -9.84 -0.1481 MIMAT0000156 mmu-miR-144 67345 Herc4 ucAUGUAGUAGAU-AUGACAu || ||::|: | |||||| uaUAAAUUGUUCACUACUGUa 2 19 87 107 [mm9:10:62780323-62780343:+] 0.6122 126 6 -7.88 -1.1891 MIMAT0000160 mmu-miR-150 67345 Herc4 gugaccAUGUUCCCAACCCUCu || : | ||||||| acauuuUAAUGUGUUUGGGAGg 2 17 120 141 [mm9:10:62736557-62736578:+] 0.4612 144 7 -15.87 -0.4512 MIMAT0000165 mmu-miR-155 67345 Herc4 uggggauaguguuaauCGUAAUu |||||| caaaauuaaaaacuguGCAUUAa 2 8 120 142 [mm9:10:62780356-62780378:+] 0.5589 120 6 -7.06 -0.1280 MIMAT0000165 mmu-miR-155 67345 Herc4 uggggauAGUGUUAAUCGUA-AUu | | ||||||||| || ggaaggcUGAAAAUUAGCAUGUAa 2 17 148 171 [mm9:10:62736585-62736608:+] 0.4627 128 0 -11.79 -1.1046 MIMAT0000212 mmu-miR-183 67345 Herc4 ucACUUAAGAUGGUCACGGUAu || | | | :|||| ||| uuUGUAAUAAAAUAGUGACAUu 2 21 364 385 [mm9:10:62780600-62780621:+] 0.7579 124 0 -8.01 -0.1033 MIMAT0000215 mmu-miR-186 67345 Herc4 ucggguuuuccucUUAAGAAac ||||||| gaguuacuucuguAAUUCUUac 3 10 64 85 [mm9:10:62780300-62780321:+] 0.6506 125 0 -8.58 -0.1891 MIMAT0000229 mmu-miR-199a-5p 67345 Herc4 cuugUCCAUCAGACUUGUGACcc || | |:| |||||| auugAGCUUCUUUUUACACUGau 3 20 685 707 [mm9:10:62737122-62737144:+] 0.5145 131 0 -10.03 -0.1617 MIMAT0000236 mmu-miR-203 67345 Herc4 gaucaccaggAUUUGUAAAGUg |||||||||:| gucuugaaaaUAAACAUUUUAa 2 13 712 733 [mm9:10:62737149-62737170:+] 0.5208 144 0 -10.85 -0.2611 MIMAT0000239 mmu-miR-206 67345 Herc4 ggugugugaaggAAUGUAAGgu | |||||| guaauaaaauagUGACAUUCag 3 11 367 388 [mm9:10:62780603-62780624:+] 0.7579 122 0 -6.34 -0.4936 MIMAT0000239 mmu-miR-206 67345 Herc4 ggUGUGUGAAGGAAUGUAAGGu |:::|: || ||||||| aaAUGUAUACCCAAACAUUCCc 2 21 62 83 [mm9:10:62736499-62736520:+] 0.5082 152 7 -14.64 -0.3611 MIMAT0004577 mmu-miR-299 67345 Herc4 uuCGCCAAAUGGCAGGGUGUau || || :| |||||| caGCACCUUUUC--CCCACAaa 3 21 258 277 [mm9:10:62736695-62736714:+] 0.4952 121 0 -14.93 -0.1065 MIMAT0000513 mmu-miR-19b 67345 Herc4 agUCAAAACGUACCUAAACGUGu | |||| | | :||||||: ggAAUUUU--AAGAGUUUGCAUa 2 22 216 236 [mm9:10:62780452-62780472:+] 0.6701 138 0 -9.09 -0.1405 MIMAT0000519 mmu-miR-200a 67345 Herc4 uguagCAAUGGUCUGUCACAAu |||: :| ||||||| guuaaGUUGGUAACCAGUGUUg 2 18 457 478 [mm9:10:62736894-62736915:+] 0.5083 153 7 -16.23 -0.1588 MIMAT0000528 mmu-miR-18a 67345 Herc4 gauagacgugaucuaCGUGGAAu ||||||| uggguuuaauccccaGCACCUUu 2 9 245 267 [mm9:10:62736682-62736704:+] 0.4952 140 7 -16.16 -0.3953 MIMAT0000537 mmu-miR-27a 67345 Herc4 cgccUUGAAUCGGUGACACuu || ||| |||||| cccaAAAUUAAAAACUGUGca 3 18 118 138 [mm9:10:62780354-62780374:+] 0.5589 133 0 -8.39 -0.3069 MIMAT0004651 mmu-miR-340-5p 67345 Herc4 uuAGUCAGAGUAACGA-AAUAUu ||| |: :| |||| ||||| gaUCACUUGUACUGCUAUUAUAu 2 21 301 323 [mm9:10:62736738-62736760:+] 0.4932 132 0 -8.86 -0.3395 MIMAT0000651 mmu-miR-19a 67345 Herc4 agUCAAAACGUAUCUAAACGUGu | |||| | || ||||||: ggAAUUUU-AAGAG-UUUGCAUa 2 22 216 236 [mm9:10:62780452-62780472:+] 0.6701 137 0 -10.57 -0.1303 MIMAT0000656 mmu-miR-139-5p 67345 Herc4 gaccucUGUGCACGUGACAUcu |:|| | |||||| gcauuaAUAC-UAAACUGUAca 3 17 136 156 [mm9:10:62780372-62780392:+] 0.5589 126 0 -7.95 -0.1035 MIMAT0000658 mmu-miR-210 67345 Herc4 agucgGCGACAGUGUGCGUGUc ||| | ::||||||| gcucaCGC-CUAGUACGCACAa 2 18 219 239 [mm9:10:62736656-62736676:+] 0.4998 147 7 -17.66 -0.3028 MIMAT0000671 mmu-miR-224 67345 Herc4 uuGCCUUG-GUGAUCACUGAAu :| ||: | ||||||| | uuUGUAAUAAAAUAGUGACAUu 2 20 364 385 [mm9:10:62780600-62780621:+] 0.7579 122 0 -10.32 -0.1347 MIMAT0000673 mmu-miR-181b 67345 Herc4 ugggUGGC-UGUC--GUUACUU-ACAa ||:| |||| | ||||| ||| cuaaACUGUACAGAACCAUGAAUUGUc 2 20 145 171 [mm9:10:62780381-62780407:+] 0.5589 125 0 -14.78 -0.8516 MIMAT0001537 mmu-miR-429 67345 Herc4 ugccGUAAUGGUCUG-UCAUAAu ||| :|| || |||||| ugucCAUCCUCAUACAAGUAUUg 2 19 168 190 [mm9:10:62780404-62780426:+] 0.6145 126 6 -11.96 -0.9979 MIMAT0003112 mmu-miR-489 67345 Herc4 cgACGGUAUAUACACCACAGUAa ||: ||| | | ||| ||| uuUGUAAUA-AAAUAGUGACAUu 2 22 364 385 [mm9:10:62780600-62780621:+] 0.7579 123 0 -6.09 -0.1002 MIMAT0003182 mmu-miR-494 67345 Herc4 cuCCAAAGGGCACAUACA-AAGu | | | |:|| ||||| ||| agGCUGUGCUGUUUAUGUCUUCa 2 21 396 418 [mm9:10:62736833-62736855:+] 0.5007 128 0 -15.60 -0.7919 MIMAT0003182 mmu-miR-494 67345 Herc4 cuccaaagggcacauACAAAGu |||||| uuuaguugauauuauUGUUUCa 2 8 623 644 [mm9:10:62737060-62737081:+] 0.5083 120 6 -8.64 -0.1444 MIMAT0003184 mmu-miR-487b 67345 Herc4 uucACCUACUGG-GACAUG-CUAa | | | ||: |||||| ||| aaaUUGUUCACUACUGUACUGAUg 2 20 90 113 [mm9:10:62780326-62780349:+] 0.6122 122 0 -11.28 -1.0697 MIMAT0003727 mmu-miR-374 67345 Herc4 guGAAUCGUCCAACAUAAUAUa ||| |:| | ||||||| caCUU-GUA-CUGCUAUUAUAu 2 21 304 323 [mm9:10:62736741-62736760:+] 0.4959 144 7 -11.06 -0.3104 MIMAT0003456 mmu-miR-495 67345 Herc4 uucUUCACGUGGUACAAACAAa || || | | ||||||| auaAAUUGGA--AAGUUUGUUg 2 20 171 190 [mm9:10:62736608-62736627:+] 0.4627 148 7 -6.00 -0.2502 MIMAT0003486 mmu-miR-491 67345 Herc4 ggaguaccuucccAAGGGGUGa |||||||| uccccagcaccuuUUCCCCACa 2 10 254 275 [mm9:10:62736691-62736712:+] 0.4952 145 7 -17.05 -1.0017 MIMAT0004324 mmu-miR-181d 67345 Herc4 ugGGUGGCUGUUGUUACUU-ACAa |::: | ||| ||||| ||| aaCUGUACAGAACCAUGAAUUGUc 2 22 148 171 [mm9:10:62780384-62780407:+] 0.5589 125 0 -12.96 -0.8481 MIMAT0004855 mmu-miR-876-3p 67345 Herc4 acuuAAUGAAACAUUUGGUGAu ||| | |||||||| cuguUUAGUACAAAAACCACUc 2 19 13 34 [mm9:10:62780249-62780270:+] 0.5961 150 7 -10.14 -0.7817 MIMAT0004858 mmu-miR-18b 67345 Herc4 gauugucgugaucuaCGUGGAAu ||||||| uggguuuaauccccaGCACCUUu 2 9 245 267 [mm9:10:62736682-62736704:+] 0.4952 140 7 -18.06 -0.3953 MIMAT0004896 mmu-miR-590-3p 67345 Herc4 ugaUCGAAUAUGUAUUUUAau | :||:|| ||||||| aaaAUUUUGUA-AUAAAAUag 3 19 359 378 [mm9:10:62780595-62780614:+] 0.7236 140 0 -5.00 -0.4327 MIMAT0004896 mmu-miR-590-3p 67345 Herc4 ugaUCGAAUAUGUAUUUUAAu | :||:|| |||||| | uccAUUUUGUAAAUAAAAAUu 2 19 344 364 [mm9:10:62780580-62780600:+] 0.7236 134 0 -4.59 -0.2152 MIMAT0004896 mmu-miR-590-3p 67345 Herc4 ugAUCGAAUAUGUAU-UUUAAu || :| ||| || ||||| ugUAAUUCUUACUUAUAAAUUg 2 20 74 95 [mm9:10:62780310-62780331:+] 0.6506 123 0 -6.31 -1.2250 MIMAT0004896 mmu-miR-590-3p 67345 Herc4 ugaucgaauauguaUUUUAAu |||||| acugaugaaagcccAAAAUUa 2 8 107 127 [mm9:10:62780343-62780363:+] 0.5589 120 6 -5.30 -0.1092 MIMAT0004896 mmu-miR-590-3p 67345 Herc4 ugAUCGAAUAUGUAUUU-UAAu |: |||: | ||||| ||| auUGUCUUGAAAAUAAACAUUu 2 20 709 730 [mm9:10:62737146-62737167:+] 0.5208 127 0 -5.39 -1.2659 MIMAT0005850 mmu-miR-1192 67345 Herc4 uuaaaccagacaaaCAAACAAa ||||||| uaauaaauuggaaaGUUUGUUg 2 9 169 190 [mm9:10:62736606-62736627:+] 0.4627 140 7 -9.89 -0.2569

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061748 Herc4 Mus musculus 67345

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Herc4 mmu-miR-199a-3p beg:91 end:107 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||. |||||||| &5' ---------TGTTCACTACTGT 3' Herc4 mmu-miR-199b beg:91 end:107 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||. |||||||| &5' ---------TGTTCACTACTGT 3' Herc4 mmu-miR-218-2star beg:148 end:165 pic:3' GCGCCACGAAC-TGTCTTGGTAC 5'& || ||||||||||| &5' ---------TGTACAGAACCATG 3' Herc4 mghv-miR-M1-8 beg:245 end:265 pic:3' CTGGTTTGGGGGT--CACTCACGA 5'& |||. |||.|||| &5' ------ACCTGATGTGTGGGTGC- 3' Herc4 mmu-let-7gstar beg:147 end:158 pic:3' CGTTCCGTCACCGGACATGTCA 5'& |||||||| &5' -------------CTGTACAG- 3' Herc4 mmu-miR-124star beg:179 end:198 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& |||| .||||||.|| &5' --CAAGTA---TTGTGAATAC- 3' Herc4 mmu-miR-151-5p beg:141 end:166 pic:3' TGATCTGACAC-TCGAGGAGCT 5'& |||| ||||| || || .|| &5' ACTAAACTGTACAGAACCATGA 3' Herc4 mmu-miR-15astar beg:299 end:322 pic:3' ACTCCG-TCGTGTCA-TACCGGAC 5'& |.|| || || |||||||| &5' -GGGGAAAG-ACTACGATGGCCTG 3' Herc4 mmu-miR-1894-5p beg:295 end:305 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& ||||.|| &5' --------------GGGGGGA- 3' Herc4 mmu-miR-1970 beg:373 end:385 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& .|||||||. &5' -------------TAGTGACAT- 3' Herc4 mmu-miR-19a beg:222 end:237 pic:3' AGTCAAAACGTATCT-AAACGTGT 5'& ||| ||||||.| &5' ------------AGAGTTTGCATA 3' Herc4 mmu-miR-19b beg:223 end:237 pic:3' AGTCAAAACGTACCTAAACGTGT 5'& | ||||||.| &5' ------------GAGTTTGCATA 3' Herc4 mmu-miR-207 beg:295 end:319 pic:3' CTCCCTCCTCTC-GGTCCTCTTCG 5'& |||.||| || |.| || .|| &5' --GGGGGGAAAGACTACGAT-GGC 3' Herc4 mmu-miR-322 beg:260 end:279 pic:3' AGGTTTTGTACTTA-ACGACGAC 5'& .||||.| ||.|||| &5' ------GCATGGAAATGTTGCT- 3' Herc4 mmu-miR-338-5p beg:173 end:192 pic:3' GTGAGTCGTGGTCCTATAACAA 5'& |||| .|| .|||||| &5' --CTCA-TACAA--GTATTGT- 3' Herc4 mmu-miR-342-3p beg:251 end:262 pic:3' TGCCCACGCTAAAGACACACTCT 5'& ||||||.| &5' --------------TGTGTGGG- 3' Herc4 mmu-miR-361 beg:96 end:115 pic:3' CATGGGGACCTCTAAGACTATT 5'& || ||| |||||.| &5' --ACTACTGTA----CTGATGA 3' Herc4 mmu-miR-377 beg:246 end:261 pic:3' TGTTTTCAACGGAA-ACACACTA 5'& ||| ||||||. &5' ----------CCTGATGTGTGG- 3' Herc4 mmu-miR-450b-3p beg:258 end:279 pic:3' TACGTACGTTTTACAAGGGTTA 5'& .|||||| .||||||| |. &5' GTGCATG-GAAATGTTGCT--- 3' Herc4 mmu-miR-452 beg:339 end:359 pic:3' CAGAGTCAAAGG--AGACGTTTGT 5'& ||||| |.||.|||.| &5' -------TTTCCATTTTGTAAATA 3' Herc4 mmu-miR-468 beg:313 end:333 pic:3' GTCTGTGTGCGTGTAGTCAGTAT 5'& |.| | .|| || ||||||| &5' --GGC-C-TGCCCA-CAGTCAT- 3' Herc4 mmu-miR-500 beg:245 end:267 pic:3' ACTTGGGA-ACGGGTCCACGTAA 5'& |||. ||. ..||||||| &5' ---ACCTGATGTGTGGGTGCAT- 3' Herc4 mmu-miR-501-3p beg:247 end:267 pic:3' GTTTAGGA--ACGGGCCCACGTAA 5'& ||| ||. .|||||||| &5' -----CCTGATGTGTGGGTGCAT- 3' Herc4 mmu-miR-539 beg:25 end:45 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& |||| .||||||. &5' ----ACCACTCGT-GTTTCTCT 3' Herc4 mmu-miR-677 beg:280 end:301 pic:3' AGTCTTCGATT-AG-TAGTGACTT 5'& |.| || |||||||.. &5' ------GTTTCTTCAATCACTGGG 3' Herc4 mmu-miR-679 beg:309 end:331 pic:3' TGGTTCTCA-GTGGAGTGTCAGG 5'& |.| .| ..|| ||||||| &5' --CGATGGCCTGCC-CACAGTC- 3' Herc4 mmu-miR-715 beg:250 end:270 pic:3' GTGCGCCCCCACACGTGCCTC 5'& |.|.| |||| |||.||| &5' -ATGTGTGGGT--GCATGGA- 3' Herc4 mmu-miR-742star beg:245 end:263 pic:3' ACTAATCGTTGG----TACACTCAT 5'& ||| .||||.||. &5' ---------ACCTGATGTGTGGGTG 3' Herc4 mcmv-miR-m01-2 beg:28 end:46 pic:3' TGGCAAGGTTGGGCT--AAGAGAAG 5'& || ||.|| ||||||| &5' ------CC-ACTCGTGTTTCTCTT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Herc4 mmu-miR-103 259 280 AGUAUCGGG-ACAUGUUACGACGA- :|: | || ||||:|||| ---GGGUGCAUGGA-AAUGUUGCUU Herc4 mmu-miR-107 250 280 -ACUAU-CGGGACAUGU-----UACGACGA- ||||: |: ||:|| |||:|||| CUGAUGUGUGG-GUGCAUGGAAAUGUUGCUU Herc4 mmu-miR-134 38 61 GGGGAGACCAGUUG-GUCAGUGU- ::|||| || ||: ||| |||| UUUCUCUUGUGAAUUCAG-CACAG Herc4 mmu-miR-142-3p 292 315 -GGUAUUUCAUCCUUUGUGAUGU- :|| ::| :||||| |||||: AUCACUGGG-GGGAAAGACUACGA Herc4 mmu-miR-144 133 156 GAUCAUGUAGUA--GAUAUGACAU- ||:|||:| ||| |||||| --UGUGCAUUAAUACUAAACUGUAC Herc4 mmu-miR-15b 247 266 ACAUUUGGUACUACACG---ACGAU ||| |||||||: ||| ----UACC-UGAUGUGUGGGUGCA- Herc4 mmu-miR-193 295 321 -GACCC-------UGAAACAUCCGGUCAA ||||| ||| |||| ACUGGGGGGAAAGACUACGAUGGCCU--- Herc4 mmu-miR-194 262 283 AGGUGUACCU---CAACGACAAUGU :|||||| |||||| ||| --UGCAUGGAAAUGUUGCU--UACU Herc4 mmu-miR-196a 231 254 GGUUGUU---GUACUUUGAUGGAU- :|| : ||||:|||||: --UGCAUAUUUCGGAAAUUACCUGA Herc4 mmu-miR-196b 231 254 GGUUGUUGU---CCUUUGAUGGAU- :|| |||||:|||||: --UGCAUAUUUCGGAAAUUACCUGA Herc4 mmu-miR-199a 258 302 CUUGUCCAU---------CA------GACUU--------GUGACCC :|||: || ||| ||||||| ---UGGGUGCAUGGAAAUGUUGCUUACUGUUUCUUCAAUCACUGGGG Herc4 mmu-miR-199b 285 302 CUUGUCCAUCAGAUUU--GUGACCC- ||| ||||||| ---------UUCUUCAAUCACUGGGG Herc4 mmu-miR-200a 43 64 UGUAGCAAU--GGUC-UGUCACAAU |:|| :||| |||||| --CUUGUGAAUUCAGCACAGUGA-- Herc4 mmu-miR-24 93 121 GACAAG-GACGACUUGACU-----CGGU ||||| || ||| ||||| ||| UUGUUCACUACUGUACUGAUGAAAGCCC Herc4 mmu-miR-291a-5p 297 339 -UCUCUC------------CCGGA--GGUG-----AAACUAC :|:|:| ||||| |||| |||||| UGGGGGGAAAGACUACGAUGGCCUGCCCACAGUCAUUUGAUU Herc4 mmu-miR-291b-5p 312 340 CUCUCCCGGA--GGUG-----AAACUAG- || ||||| |||| ||||||: -CGAUGGCCUGCCCACAGUCAUUUGAUUA Herc4 mmu-miR-326 294 330 -UGACCUCCUU-----------CC---CGGGUCUCC |||||:||:| || ||||| || CACUGGGGGGAAAGACUACGAUGGCCUGCCCACAGU Herc4 mmu-miR-328 296 321 UGCCUUCCCGUCU----CUCCCGGUC :|| || ||| || |||| CUGGGGGGAAAGACUACGAUGGCCU- Herc4 mmu-miR-34a 289 325 UUGUUGGUCGAUUCUGU---------------GACGGU |||:|| ||::|: : ||||| -UCAAUCA-CUGGGGGGAAAGACUACGAUGGCCUGCCC Herc4 mmu-miR-377 222 262 UGUUUUCAA-CGG--AA---------------ACACACUA :||:|||| || || ||||||: UUAAGAGUUUGCAUAUUUCGGAAAUUACCUGAUGUGUGGG Herc4 mmu-miR-383 320 340 UC-GGUGUCAGUGGAAGACUAGA | |||||||||: :||||: UGCCCACAGUCAU---UUGAUUA Herc4 mmu-miR-449b 305 325 GGUC-GAUCGUUAC-GUGACGGA || ||| |:||| | ||||| -AAGACUA-CGAUGGC-CUGCCC Herc4 mmu-miR-468 305 334 GUCUG-UGU------GCGUGUAGUCAGUAU |||| ||: :|| || ||||||| AAGACUACGAUGGCCUGCCCA-CAGUCAUU Herc4 mmu-miR-484 296 323 UAGCCCUCCC--CUGAC----UCGGACU :|||:|| |||| :||||| -CUGGGGGGAAAGACUACGAUGGCCUGC Herc4 mmu-miR-500 241 268 GACUUG---GGA--ACGGGUCCACGUA- ||| ||| ||: ::||||||| -GGAAAUUACCUGAUGUGUGGGUGCAUG Herc4 mmu-miR-501* 248 268 GUUUAGGA--ACGGGCCCACGUAA ||| ||: :|||||||| ----ACCUGAUGUGUGGGUGCAUG Herc4 mmu-miR-539 323 348 UGUGU-GGUUC-CUAUUAAAGAGG- |||| :|| ||| ||||:||| CCACAGUCAUUUGAUUAUUUUUCCA Herc4 mmu-miR-551b 241 264 GUGACUU---UGGUU--CAUACCCAGC ||| ||| ||:||||| ---GGAAAUUACCUGAUGUGUGGGUG- Herc4 mmu-miR-669c 171 190 UGUGUGUAGGUGUGUGUUGAUA- ||||| ||:|||| ||| ----CCAUCCUCAUACAAGUAUU Herc4 mmu-miR-679 294 332 -UGGUUCUC------------AGUGGA---GUGUCAGG ||: |:| | :||| ||||||| CACUGGGGGGAAAGACUACGAUGGCCUGCCCACAGUCA Herc4 mmu-miR-684 294 312 AACUGAACUUCCCU-UUUGA- || || |||| |:||| --CAC-UGGGGGGAAAGACUA Herc4 mmu-miR-685 316 338 CACGGAGUGGA-GUCGGUA-ACU- |||| :|| |||:||| ||| -GGCCU-GCCCACAGUCAUUUGAU Herc4 mmu-miR-705 314 351 -ACGGGUGGGGUG---------------GAGGGUGG- || || ||||| :|:|||:: AUGGCCUGCCCACAGUCAUUUGAUUAUUUUUCCAUUU Herc4 mmu-miR-712* 289 315 -GUU-GUGGGCCCCCA--CUGA-GCGU ||| |||: ||||| |||| || UCAAUCACUGGGGGGAAAGACUACGA- Herc4 mmu-miR-714 311 332 CGCUGGCUGGCCGGGAG-CAGC ||| :|:|| |||| ||| ACGA-UGGCCUGCCCACAGUCA Herc4 mmu-miR-715 252 271 GUGCGCCCCCACACGUGCCUC |:|:| |||| |||:||| GAUGUGUGGGU--GCAUGGAA Herc4 mmu-miR-718 291 307 GCUGUGGGCCGGCCCGCCUUC |:| |:||| |||| ---AAUCA--CUGGGGGGAAA Herc4 mmu-miR-762 314 332 CGAGACAGGGCCGGG-GUCGGGG || ||: |||| |||:| ---AUGGCCU-GCCCACAGUCA- Herc4 mmu-miR-764-3p 306 325 UGUCAAC-GGUGAUACCGGA-GGA | |:|| ||||||| || -----AGACUACGAUGGCCUGCCC Herc4 mmu-miR-770-3p 305 328 GGUCGAGGUGCA---GUCCGGGUGC || |:||| | |||||| -AAGA-CUACGAUGGCCUGCCCACA Herc4 mmu-miR-99b 231 265 GCGUUCC-AGCCAA-----GAU-----GCCCAC- ||| |||| ||: :||||| UGCAUAUUUCGGAAAUUACCUGAUGUGUGGGUGC Herc4 mmu-miR-199a* 100 107 UUGGUUAC---------------------ACGUCUGAUGACAU ||: ||||||||| AGUUACUUCUGUAAUUCUUACUUAUAAAUUGUUCACUACUGUAC Herc4 mmu-miR-468 326 333 G--------------UCUG-UGU------GCGUGUAGUCAGUAU |||| ||: :|| || ||||||| AAUCACUGGGGGGAAAGACUACGAUGGCCUGCCCA-CAGUCAUU Herc4 mmu-miR-501* 260 267 GUUUA-------------------GGA--ACGGGCCCACGUAA ||| ||: :|||||||| AGAGUUUGCAUAUUUCGGAAAUUACCUGAUGUGUGGGUGCAUG Herc4 mmu-miR-679 324 331 ------UGGUUCUCAG----------------UGGAGUGUCAGG || :|:| :|| ||||||| UCAAUCACUGGGGGGAAAGACUACGAUGGCCUGCC-CACAGUCA Herc4 mmu-miR-103 257 278 aguaucgGGACAUGUUACGACGA | || | ||||:|||| gtgggtgCATGGA-AATGTTGCT Herc4 mmu-miR-107 256 278 ACUAUCG-GGACAUGUUACGACGA || :|: | || | ||||:|||| TGTGGGTGCATGGA-AATGTTGCT Herc4 mmu-miR-142-3p 290 313 GGUAUU--UCAUCCUUUGUGAUGu | || | :| :||||| ||||| CAATCACTGGGGGGAAAGACTACg Herc4 mmu-miR-144 132 154 GAUCAUGUAG-UA-GAUAUGACAU || ||:|||: || ||| |||||| CT-GTGCATTAATACTAAACTGTA Herc4 mmu-miR-15b 256 279 ACAUUUG-GUA-CUACACGACGAu |||:::: ||| || ||:|||| TGTGGGTGCATGGAAATGTTGCTt Herc4 mmu-miR-193 296 323 GACC-------CUGAAACAUCCGGUCaa |||| |||| | |||| | CTGGGGGGAAAGACTACGATGGCCTGcc Herc4 mmu-miR-194 260 288 agguGUACCU---CAAC----GACAAUGu |||||| |||| ||||| | ggtgCATGGAAATGTTGCTTACTGTTTCt Herc4 mmu-miR-196a 232 252 gguuguuguaCUUUGAUGGAu ||||:||||| gcatatttcgGAAATTACCTg Herc4 mmu-miR-196b 232 252 gguuguuguCCUUUGAUGGAu |||||:||||| gcatatttcGGAAATTACCTg Herc4 mmu-miR-199a 278 300 cuuguccaucagacuuGUGACCC ||||||| ttactgtttcttcaatCACTGGG Herc4 mmu-miR-199a* 87 107 uUGGUUACACGUCUGAUGACAU |: ||| ||: ||||||||| tATAAAT-TGTTCACTACTGTA Herc4 mmu-miR-199b 278 300 cuUGUCCAUCAGAUUUGUGACCC || | | |: || ||||||| ttACTGTTTCTTCAATCACTGGG Herc4 mmu-miR-200a 41 65 uguAGCAAU--GGUC-UGUCACaau |:|| | :||| |||||| ctcTTGTGAATTCAGCACAGTGaga Herc4 mmu-miR-291a-5p 310 338 ucuCUCCCGGA--GGU----G-AAACUAc || ||||| ||| | |||||| tacGATGGCCTGCCCACAGTCATTTGATt Herc4 mmu-miR-291b-5p 311 338 cuCUCCCGGA--GGU----G-AAACUAg || ||||| ||| | |||||| acGATGGCCTGCCCACAGTCATTTGATt Herc4 mmu-miR-326 295 329 UGACCUCCUU-----------CC---CGGGUCUCc |||||:||:| || ||||| || ACTGGGGGGAAAGACTACGATGGCCTGCCCACAGt Herc4 mmu-miR-328 295 321 UG-CCUUCCCGUCU----CUCCCGGuc || ||::|| ||| || |||| ACTGGGGGGAAAGACTACGATGGCCtg Herc4 mmu-miR-34a 304 324 UUGUUGGUCGAUUCUGUGACGGu || :||:| | | |:| ||||| AAAGACTA-CGATGGC-CTGCCc Herc4 mmu-miR-377 239 261 uGUUUUCAACGGA-AACACACua |::|| || ||| |||||| tCGGAAATTACCTGATGTGTGgg Herc4 mmu-miR-383 321 339 ucGGUGUCAGUGGAAGACUAga ||||||||| |:|||| gcCCACAGTCA---TTTGATta Herc4 mmu-miR-449b 304 324 ggUC-GAUCGUUA-CGUGACGGa || ||| |:|| || ||||| aaAGACTA-CGATGGC-CTGCCc Herc4 mmu-miR-468 311 333 guCUG-UGUGCGUGUAGUCAGUAu ||: :| :|| || ||||||| acGATGGCCTGCCCA-CAGTCATt Herc4 mmu-miR-484 294 322 uaGCCCUCCC---CUGA--CU--CGGACu | ||:||| |||| || ||||| caCTGGGGGGAAAGACTACGATGGCCTGc Herc4 mmu-miR-500 240 266 GACUU---GGGA--ACGGGUCCACGUA | ||| ||| ||: ::||||||| CGGAAATTACCTGATGTGTGGGTGCAT Herc4 mmu-miR-501* 242 267 gUUUA--GGA--ACGGGCCCACGUAa |||| ||| ||: :|||||||| gAAATTACCTGATGTGTGGGTGCATg Herc4 mmu-miR-551b 238 264 guGACUU---UGG--UUCAUACCCAgc | ||| ||| | ||:||||| ttCGGAAATTACCTGATGTGTGGGTgc Herc4 mmu-miR-669c 167 188 uguguGUAGGUGUGUGUUGAUA ||||| ||:|||| ||| ttgtcCATCCTCATACAAGTAT Herc4 mmu-miR-679 308 331 UGGUUCUCAGUGGA---GUGUCAGg ||:| || | :||| ||||||| ACTACGA-TGGCCTGCCCACAGTCa Herc4 mmu-miR-684 292 310 aACUGAACUUCCCUUU-UGA | || ||::|||||| ||| aTCAC-TGGGGGGAAAGACT Herc4 mmu-miR-685 315 335 caCGGAGUGGAGUCGGUAAcu |||| || |||:|||| tgGCCTGCCCACAGTCATTtg Herc4 mmu-miR-705 306 327 aCGGGUG-GGGUGGA-GGGUGg | |:|| : :||| ||||| aGACTACGATGGCCTGCCCACa Herc4 mmu-miR-712* 290 315 GUU-GUGGGCCCCC--ACUGA-GCgu ||| |||: ||||| |||| || CAATCACTGGGGGGAAAGACTACGat Herc4 mmu-miR-718 287 306 gcuGUGGGCCGGCCCGCCUUc || :| |:||| |||| cttCAATC-ACTGGGGGGAAa Herc4 mmu-miR-762 306 325 cgagacagggCCGGGGUCGGGg || || |||| agactacgatGG--CCTGCCCa Herc4 mmu-miR-764-3p 302 324 ugucaacGGUGAUACCGGA-GGa |:|| ||||||| || ggaaagaCTACGATGGCCTGCCc Herc4 mmu-miR-770-3p 304 327 ggUC-GA-GGUGCAGUCCGGGUGc || || | |:| | |||||| aaAGACTACGATGGCCTGCCCACa Herc4 mmu-miR-99b 240 263 GCGUUCCA--GCCAAGAUGCCCAC || || | | | | |::||||| CGGAAATTACCTGATGTGTGGGTG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Herc4 RAID00076886 mmu-miR-18b-5p miRNA MIMAT0004858 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00158785 mmu-miR-411-3p miRNA MIMAT0001093 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00168872 mmu-miR-1a-3p miRNA MIMAT0000123 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00214882 mmu-miR-199b-3p miRNA MIMAT0004667 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00352165 mmu-miR-582-5p miRNA MIMAT0005291 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00398474 mmu-miR-7061-5p miRNA MIMAT0028026 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00438418 mmu-miR-141-3p miRNA MIMAT0000153 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00444414 mmu-miR-128-3p miRNA MIMAT0000140 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID00666914 mmu-miR-7053-3p miRNA MIMAT0028011 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00787180 mmu-miR-7002-3p miRNA MIMAT0027907 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00825553 mmu-miR-493-5p miRNA MIMAT0017276 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00853293 mmu-miR-126b-5p miRNA MIMAT0029894 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00902673 mmu-let-7g-3p miRNA MIMAT0004519 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID00972406 mmu-miR-182-3p miRNA MIMAT0016995 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01031458 mmu-miR-27a-3p miRNA MIMAT0000537 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID01099411 mmu-miR-27b-3p miRNA MIMAT0000126 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID01197264 mmu-miR-299a-3p miRNA MIMAT0004577 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01214035 mmu-miR-18a-5p miRNA MIMAT0000528 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01323305 mmu-miR-491-5p miRNA MIMAT0003486 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01362334 mmu-miR-5619-5p miRNA MIMAT0022365 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01369319 mmu-miR-1192 miRNA MIMAT0005850 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01409712 mmu-miR-142a-3p miRNA MIMAT0000155 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01427673 mmu-miR-340-5p miRNA MIMAT0004651 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01536487 mmu-miR-489-3p miRNA MIMAT0003112 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01657639 mmu-miR-144-3p miRNA MIMAT0000156 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01708445 mmu-miR-210-3p miRNA MIMAT0000658 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID01898161 mmu-miR-429-3p miRNA MIMAT0001537 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID01951201 mmu-miR-224-5p miRNA MIMAT0000671 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02082815 mmu-miR-199a-3p miRNA MIMAT0000230 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02112184 mmu-miR-181d-5p miRNA MIMAT0004324 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID02169465 mmu-miR-495-3p miRNA MIMAT0003456 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02181703 mmu-miR-199a-5p miRNA MIMAT0000229 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02185407 mmu-miR-200a-3p miRNA MIMAT0000519 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02272736 mmu-miR-203-3p miRNA MIMAT0000236 Herc4 mRNA 67345 Prediction 0.2202 Herc4 RAID02317851 mmu-miR-452-5p miRNA MIMAT0001637 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02319093 mmu-miR-183-5p miRNA MIMAT0000212 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02473064 mmu-miR-140-5p miRNA MIMAT0000151 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02473206 mmu-miR-19a-3p miRNA MIMAT0000651 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID02680798 mmu-miR-150-5p miRNA MIMAT0000160 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02803081 mmu-miR-107-3p miRNA MIMAT0000647 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02914953 mmu-miR-374b-5p miRNA MIMAT0003727 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02916209 mmu-miR-487b-3p miRNA MIMAT0003184 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02926374 mmu-miR-6910-3p miRNA MIMAT0027721 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID02960049 mmu-miR-181b-5p miRNA MIMAT0000673 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID02993128 mmu-miR-706 miRNA MIMAT0003496 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID03000976 mmu-miR-494-3p miRNA MIMAT0003182 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID03093994 mmu-miR-139-5p miRNA MIMAT0000656 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID03106070 mmu-miR-7217-5p miRNA MIMAT0028402 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID03377453 mmu-miR-155-5p miRNA MIMAT0000165 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308 Herc4 RAID03427219 mmu-miR-590-3p miRNA MIMAT0004896 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID03525437 mmu-miR-206-3p miRNA MIMAT0000239 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID03532545 mmu-miR-186-5p miRNA MIMAT0000215 Herc4 mRNA 67345 Prediction 0.2202 Herc4 RAID03717331 mmu-miR-876-3p miRNA MIMAT0004855 Herc4 mRNA 67345 Prediction 0.1828 Herc4 RAID04004367 mmu-miR-19b-3p miRNA MIMAT0000513 Herc4 mRNA 67345 CLIP-seq//Prediction 0.6308