DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim11 ATTTA 112-1515 2197-2201;2215-2219

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004527 mmu-miR-124* 94091 Trim11 uaguuccagGCGACACUUGUGc | || ||||||| cagaaaugaCACU-UGAACACa 2 14 2466 2486 [mm9:11:58804776-58804796:+] 0.5021 143 7 -9.94 -0.3007 MIMAT0004527 mmu-miR-124* 94091 Trim11 uaguuccagGCGACACUUGUGc | || ||||||| cagaaaugaCACU-UGAACACa 2 14 2277 2297 [mm9:11:58804776-58804796:+] 0.5021 143 7 -9.94 -0.3312 MIMAT0004527 mmu-miR-124* 94091 Trim11 uaguuccagGCGACACUUGUGc | || ||||||| cagaaaugaCACU-UGAACACa 2 14 540 560 [mm9:11:58804776-58804796:+] 0.5021 143 7 -9.94 -0.6822 MIMAT0004530 mmu-miR-127* 94091 Trim11 uagucucgggagacUCGAAGUc ||||||| uuagguagggagacAGCUUCAa 2 9 2267 2288 [mm9:11:58804577-58804598:+] 0.4959 140 7 -12.98 -0.1399 MIMAT0004530 mmu-miR-127* 94091 Trim11 uagucucgggagacUCGAAGUc ||||||| uuagguagggagacAGCUUCAa 2 9 2078 2099 [mm9:11:58804577-58804598:+] 0.4959 140 7 -12.98 -0.1565 MIMAT0004530 mmu-miR-127* 94091 Trim11 uagucucgggagacUCGAAGUc ||||||| uuagguagggagacAGCUUCAa 2 9 341 362 [mm9:11:58804577-58804598:+] 0.4959 140 7 -12.98 -0.3926 MIMAT0000152 mmu-miR-140* 94091 Trim11 ggcACCA-AGAUGGGACACCAu |||| ||: ||||||| gucUGGUGGCUG-GCUGUGGUa 2 19 580 600 [mm9:11:58804816-58804836:+] 0.5020 147 7 -22.52 -0.1179 MIMAT0004534 mmu-miR-145* 94091 Trim11 guucuugucauaaaGGUCCUUa ||||||| guggcucacaaaacCCAGGAAu 2 9 394 415 [mm9:11:58802704-58802725:+] 0.5017 140 7 -12.84 -0.1364 MIMAT0004534 mmu-miR-145* 94091 Trim11 guucuugucauaaaGGUCCUUa ||||||| guggcucacaaaacCCAGGAAu 2 9 205 226 [mm9:11:58802704-58802725:+] 0.5017 140 7 -12.84 -0.1545 MIMAT0000217 mmu-miR-188-5p 94091 Trim11 ggGAGGU-GGU-ACGUUCCCUac :||:| ::| || |||||| ucUUCUAUUUAUUGAAAGGGAaa 3 20 676 698 [mm9:11:58804912-58804934:+] 0.5020 133 0 -18.33 -0.1324 MIMAT0000240 mmu-miR-207 94091 Trim11 cucccuccUCUCGGUCCUCUUCg | || |||||||| aacugccaACAGGAAGGAGAAGg 2 16 1602 1624 [mm9:11:58803912-58803934:+] 0.6523 151 7 -16.27 -0.1829 MIMAT0000240 mmu-miR-207 94091 Trim11 cucccuccUCUCGGUCCUCUUCg | || |||||||| aacugccaACAGGAAGGAGAAGg 2 16 1413 1435 [mm9:11:58803912-58803934:+] 0.6523 151 7 -16.27 -0.2037 MIMAT0000240 mmu-miR-207 94091 Trim11 cuCCCUCCUCUCGGUCCUCU-UCg |||| || |: :||||| || uaGGGAUUAG-GUAGGGAGACAGc 2 22 2072 2094 [mm9:11:58804571-58804593:+] 0.4959 123 0 -23.31 -0.1053 MIMAT0000240 mmu-miR-207 94091 Trim11 cuCCCUCCUCUCGGUCCUCU-UCg |||| || |: :||||| || uaGGGAUUAG-GUAGGGAGACAGc 2 22 335 357 [mm9:11:58804571-58804593:+] 0.4959 123 0 -23.31 -0.2824 MIMAT0004575 mmu-miR-295* 94091 Trim11 cuucacacGGGGUGUAA-ACUCa ||:|| ||| |||| caccagcaCCUCAGAUUCUGAGu 2 15 269 291 [mm9:11:58804505-58804527:+] 0.4559 122 0 -16.37 -0.1389 MIMAT0000376 mmu-miR-298 94091 Trim11 cccuUCUUGUCGGGAGGAGACGg |||| | |:: ||||||| uucuAGAA-A-CUUCCCUCUGCu 2 20 198 218 [mm9:11:58802508-58802528:+] 0.5008 151 7 -19.20 -0.2566 MIMAT0004581 mmu-miR-34b-3p 94091 Trim11 cuaccGUCACCU-CAAU-CACUAa :||| | |||| ||||| cuaucUAGUUAAUGUUAUGUGAUu 2 18 364 387 [mm9:11:58802674-58802697:+] 0.5017 120 0 -11.42 -0.1004 MIMAT0004581 mmu-miR-34b-3p 94091 Trim11 cuaccGUCACCU-CAAU-CACUAa :||| | |||| ||||| cuaucUAGUUAAUGUUAUGUGAUu 2 18 175 198 [mm9:11:58802674-58802697:+] 0.5017 120 0 -11.42 -0.1142 MIMAT0004583 mmu-miR-130b* 94091 Trim11 ucaucacguuguccCUUUCUCa ||||||| gcuggagauugaaaGAAAGAGc 2 9 1058 1079 [mm9:11:58803368-58803389:+] 0.4957 140 7 -8.85 -0.1252 MIMAT0004583 mmu-miR-130b* 94091 Trim11 ucaucacguuguccCUUUCUCa ||||||| gcuggagauugaaaGAAAGAGc 2 9 869 890 [mm9:11:58803368-58803389:+] 0.4957 140 7 -8.85 -0.1420 MIMAT0004616 mmu-miR-30c-1* 94091 Trim11 ccUCAUUUGUUGGGAGAG-GGUc |||: || ||||| ||| uuAGUGCCGAAAGCUCUCACCAa 2 21 2153 2175 [mm9:11:58804463-58804485:+] 0.4934 120 0 -15.30 -0.2007 MIMAT0004616 mmu-miR-30c-1* 94091 Trim11 ccUCAUUUGUUGGGAGAG-GGUc |||: || ||||| ||| uuAGUGCCGAAAGCUCUCACCAa 2 21 1964 1986 [mm9:11:58804463-58804485:+] 0.4934 120 0 -15.30 -0.2232 MIMAT0004616 mmu-miR-30c-1* 94091 Trim11 ccUCAUUUGUUGGGAGAG-GGUc |||: || ||||| ||| uuAGUGCCGAAAGCUCUCACCAa 2 21 227 249 [mm9:11:58804463-58804485:+] 0.4934 120 0 -15.30 -0.5226 MIMAT0004627 mmu-miR-20a* 94091 Trim11 gaaaUUCACGAGC-AUUACGUCa |:|| :| ||||||| aagaAGGUAAAUGAAAAUGCAGu 2 19 1140 1162 [mm9:11:58803450-58803472:+] 0.4784 141 7 -12.35 -0.1689 MIMAT0004627 mmu-miR-20a* 94091 Trim11 gaaaUUCACGAGC-AUUACGUCa |:|| :| ||||||| aagaAGGUAAAUGAAAAUGCAGu 2 19 951 973 [mm9:11:58803450-58803472:+] 0.4784 141 7 -12.35 -0.1908 MIMAT0004628 mmu-miR-21* 94091 Trim11 cugucggguagcuGACGACAAc |||||||| ccaggaaugaacuCUGCUGUUa 2 10 818 839 [mm9:11:58803128-58803149:+] 0.4996 145 7 -14.11 -0.1718 MIMAT0004628 mmu-miR-21* 94091 Trim11 cugucggguagcuGACGACAAc |||||||| ccaggaaugaacuCUGCUGUUa 2 10 629 650 [mm9:11:58803128-58803149:+] 0.4996 145 7 -14.11 -0.1939 MIMAT0004630 mmu-miR-26b* 94091 Trim11 cucGGUUCAUUACCUCUUGUCc :| ||||: ||||||| cgaUCCAGUAGCUUAGAACAGc 2 20 174 195 [mm9:11:58802484-58802505:+] 0.5008 155 7 -16.51 -0.1836 MIMAT0004631 mmu-miR-29a* 94091 Trim11 gaCUUGUGGUUUUCUUUA-GUCa ||| :: || : |||| ||| aaGAAGGUAAAUGAAAAUGCAGu 2 21 951 973 [mm9:11:58803450-58803472:+] 0.4784 120 0 -10.17 -0.1131 MIMAT0004635 mmu-miR-92a* 94091 Trim11 caUUACGGUGGUUAGGGGUGGa :|| | || |: ||||||| gcGAU-CAACAAGACCCCACCu 2 21 713 733 [mm9:11:58803023-58803043:+] 0.5010 154 7 -22.76 -0.2063 MIMAT0004635 mmu-miR-92a* 94091 Trim11 caUUACGGUGGUUAGGGGUGGa :|| | || |: ||||||| gcGAU-CAACAAGACCCCACCu 2 21 524 544 [mm9:11:58803023-58803043:+] 0.5010 154 7 -22.76 -0.2320 MIMAT0004661 mmu-miR-28* 94091 Trim11 agGUCGUCGAGUGUUAGAUCAc || || | | | ||||||| cuCA-CAAC-CCCUAUCUAGUu 2 21 354 373 [mm9:11:58802664-58802683:+] 0.5017 148 7 -13.46 -0.3037 MIMAT0004661 mmu-miR-28* 94091 Trim11 agGUCGUCGAGU--GUUAGAUCAc ||| || | | ||||||||| ccCAG-AGAUGAAGCAAUCUAGUa 2 21 2188 2210 [mm9:11:58804687-58804709:+] 0.5023 157 7 -20.77 -0.1105 MIMAT0004661 mmu-miR-28* 94091 Trim11 agGUCGUCGAGUGUUAGAUCAc || || | | | ||||||| cuCA-CAAC-CCCUAUCUAGUu 2 21 165 184 [mm9:11:58802664-58802683:+] 0.5017 148 7 -13.46 -0.3380 MIMAT0004661 mmu-miR-28* 94091 Trim11 agGUCGUCGAGU--GUUAGAUCAc ||| || | | ||||||||| ccCAG-AGAUGAAGCAAUCUAGUa 2 21 451 473 [mm9:11:58804687-58804709:+] 0.5023 157 7 -20.77 -0.2940 MIMAT0004666 mmu-miR-33* 94091 Trim11 cacUACGUGAC---ACCUUUGUAAc || :|:|| ||||||||| ucuAUUUAUUGAAAGGGAAACAUUu 2 20 2605 2629 [mm9:11:58804915-58804939:+] 0.5020 154 7 -13.85 -0.2674 MIMAT0004666 mmu-miR-33* 94091 Trim11 cacUACGUGAC---ACCUUUGUAAc || :|:|| ||||||||| ucuAUUUAUUGAAAGGGAAACAUUu 2 20 2416 2440 [mm9:11:58804915-58804939:+] 0.5020 154 7 -13.85 -0.2656 MIMAT0004666 mmu-miR-33* 94091 Trim11 cacUACGUGAC---ACCUUUGUAAc || :|:|| ||||||||| ucuAUUUAUUGAAAGGGAAACAUUu 2 20 679 703 [mm9:11:58804915-58804939:+] 0.5020 154 7 -13.85 -0.6476 MIMAT0003387 mmu-miR-376a* 94091 Trim11 ugAGUAUCUUCCUCUUA-GAUGg | :|||::| |||| |||| ucUAGUAGGGGCUGAAUCCUACa 2 21 2204 2226 [mm9:11:58804703-58804725:+] 0.5023 128 0 -18.16 -0.1067 MIMAT0003387 mmu-miR-376a* 94091 Trim11 ugAGUAUCUUCCUCUUA-GAUGg | :|||::| |||| |||| ucUAGUAGGGGCUGAAUCCUACa 2 21 467 489 [mm9:11:58804703-58804725:+] 0.5023 128 0 -18.16 -0.2853 MIMAT0004704 mmu-miR-335-3p 94091 Trim11 ccAGUCCUCGUUAUUACUUUUu ||| || : |||||||| cuUCAAGAAGGUAAAUGAAAAu 2 21 1136 1157 [mm9:11:58803446-58803467:+] 0.4784 156 7 -7.66 -0.1417 MIMAT0004704 mmu-miR-335-3p 94091 Trim11 ccAGUCCUCGUUAUUACUUUUu ||| || : |||||||| cuUCAAGAAGGUAAAUGAAAAu 2 21 947 968 [mm9:11:58803446-58803467:+] 0.4784 156 7 -7.66 -0.1605 MIMAT0001090 mmu-miR-409-3p 94091 Trim11 uccccaaguggcucGUUGUAAg ||||||| ccuacaggaguauuCAACAUUu 2 9 2410 2431 [mm9:11:58804720-58804741:+] 0.5023 140 7 -10.56 -0.2513 MIMAT0001090 mmu-miR-409-3p 94091 Trim11 uccccaaguggcucGUUGUAAg ||||||| ccuacaggaguauuCAACAUUu 2 9 2221 2242 [mm9:11:58804720-58804741:+] 0.5023 140 7 -10.56 -0.2780 MIMAT0001090 mmu-miR-409-3p 94091 Trim11 uccccaaguggcucGUUGUAAg ||||||| ccuacaggaguauuCAACAUUu 2 9 484 505 [mm9:11:58804720-58804741:+] 0.5023 140 7 -10.56 -0.6056 MIMAT0004753 mmu-miR-431* 94091 Trim11 ucuUCGGGACGUUCUG-CUGGAc ||:|| |||||| ||||| cccAGUCCCCCAAGACUGACCUa 2 20 265 287 [mm9:11:58802575-58802597:+] 0.5017 139 0 -23.75 -0.1456 MIMAT0004753 mmu-miR-431* 94091 Trim11 ucuUCGGGACGUUCUG-CUGGAc ||:|| |||||| ||||| cccAGUCCCCCAAGACUGACCUa 2 20 76 98 [mm9:11:58802575-58802597:+] 0.5017 139 0 -23.75 -0.1648 MIMAT0002104 mmu-miR-463* 94091 Trim11 uaCUACCUGUUGUUUAAUCCAu || ||:|: ::||||||| ugGAGUGAUAG-GGAUUAGGUa 2 21 327 347 [mm9:11:58804563-58804583:+] 0.4889 154 7 -17.28 -0.1041 MIMAT0004781 mmu-miR-532-3p 94091 Trim11 acguucggaacccacACCCUCc |||||| uuuuguauuaaacuuUGGGAGu 2 8 650 671 [mm9:11:58804886-58804907:+] 0.5020 120 6 -12.59 -0.1104 MIMAT0003127 mmu-miR-484 94091 Trim11 uaGCCC-UCCCCUGA--CUC-GGACu |||| ||| :|| ||| |||| aaCGGGAAGGCUGCUCAGAGUCCUGa 2 21 386 411 [mm9:11:58804622-58804647:+] 0.5026 122 0 -26.40 -0.1955 MIMAT0004786 mmu-miR-540-5p 94091 Trim11 ugUCUCAGUCUCCCACUGGGAAc :|:| :| | | ||||||| ccGGGGCUACA-UGAGACCCUUc 2 22 1118 1139 [mm9:11:58803428-58803449:+] 0.4784 147 7 -16.19 -0.1390 MIMAT0004786 mmu-miR-540-5p 94091 Trim11 ugUCUCAGUCUCCCACUGGGAAc :|:| :| | | ||||||| ccGGGGCUACA-UGAGACCCUUc 2 22 929 950 [mm9:11:58803428-58803449:+] 0.4784 147 7 -16.19 -0.1574 MIMAT0003167 mmu-miR-540-3p 94091 Trim11 gguccuagcuGGAGACUGGa ::||||||| acacagugccUUUCUGACCa 2 11 2028 2047 [mm9:11:58804338-58804357:+] 0.5224 142 7 -16.09 -0.1899 MIMAT0003167 mmu-miR-540-3p 94091 Trim11 gguccuagcuGGAGACUGGa ::||||||| acacagugccUUUCUGACCa 2 11 1839 1858 [mm9:11:58804338-58804357:+] 0.5224 142 7 -16.09 -0.2113 MIMAT0003167 mmu-miR-540-3p 94091 Trim11 gguccuagcuGGAGACUGGa ::||||||| acacagugccUUUCUGACCa 2 11 102 121 [mm9:11:58804338-58804357:+] 0.5224 142 7 -16.09 -0.5083 MIMAT0003171 mmu-miR-542-5p 94091 Trim11 agcacuguACUACUAGGGGCUc | || ||||||| gcugcuguUUAUCUUCCCCGAg 2 15 1791 1812 [mm9:11:58804101-58804122:+] 0.6034 146 7 -18.51 -0.1177 MIMAT0003171 mmu-miR-542-5p 94091 Trim11 agcacuguACUACUAGGGGCUc | || ||||||| gcugcuguUUAUCUUCCCCGAg 2 15 1602 1623 [mm9:11:58804101-58804122:+] 0.6034 146 7 -18.51 -0.1319 MIMAT0003373 mmu-miR-302b* 94091 Trim11 ucuuUCGUAAGGGUACAAUUUCa ||: || || ||||||| gcuuAGUUUUAACA-GUUAAAGa 2 20 422 443 [mm9:11:58802732-58802753:+] 0.5017 153 7 -10.33 -0.3938 MIMAT0003373 mmu-miR-302b* 94091 Trim11 ucuUUCGUAAG-GGUACA-AUUUCa ::||| || |:||| ||||| gcuGGGCACUCGGCGUGUGUAAAGa 2 21 1577 1601 [mm9:11:58803887-58803911:+] 0.7013 127 0 -13.80 -0.2847 MIMAT0003373 mmu-miR-302b* 94091 Trim11 ucuuUCGUAAGGGUACAAUUUCa ||: || || ||||||| gcuuAGUUUUAACA-GUUAAAGa 2 20 233 254 [mm9:11:58802732-58802753:+] 0.5017 153 7 -10.33 -0.4341 MIMAT0003373 mmu-miR-302b* 94091 Trim11 ucuUUCGUAAG-GGUACA-AUUUCa ::||| || |:||| ||||| gcuGGGCACUCGGCGUGUGUAAAGa 2 21 1388 1412 [mm9:11:58803887-58803911:+] 0.7013 127 0 -13.80 -0.3140 MIMAT0003375 mmu-miR-302c* 94091 Trim11 cguccAUUGGGGU--ACAAUUUCg ||:::::| ||||||| uugcuUAGUUUUAACAGUUAAAGa 2 18 420 443 [mm9:11:58802730-58802753:+] 0.5017 144 7 -10.86 -0.4210 MIMAT0003375 mmu-miR-302c* 94091 Trim11 cguCCAUUGGG--GUACA-AUUUCg || ||:| |:||| ||||| gcuGGGCACUCGGCGUGUGUAAAGa 2 20 1577 1601 [mm9:11:58803887-58803911:+] 0.7013 122 0 -16.85 -0.2823 MIMAT0003375 mmu-miR-302c* 94091 Trim11 cguccAUUGGGGU--ACAAUUUCg ||:::::| ||||||| uugcuUAGUUUUAACAGUUAAAGa 2 18 231 254 [mm9:11:58802730-58802753:+] 0.5017 144 7 -10.86 -0.4628 MIMAT0003375 mmu-miR-302c* 94091 Trim11 cguCCAUUGGG--GUACA-AUUUCg || ||:| |:||| ||||| gcuGGGCACUCGGCGUGUGUAAAGa 2 20 1388 1412 [mm9:11:58803887-58803911:+] 0.7013 122 0 -16.85 -0.3114 MIMAT0003376 mmu-miR-302c 94091 Trim11 ggugacuuuGUACCUUCGUGAa || ||||||| gaaagcucuCACCAAAGCACUa 2 14 2161 2182 [mm9:11:58804471-58804492:+] 0.4934 141 7 -10.57 -0.1485 MIMAT0003376 mmu-miR-302c 94091 Trim11 ggugacuuuGUACCUUCGUGAa || ||||||| gaaagcucuCACCAAAGCACUa 2 14 1972 1993 [mm9:11:58804471-58804492:+] 0.4934 141 7 -10.57 -0.1659 MIMAT0003376 mmu-miR-302c 94091 Trim11 ggugacuuuGUACCUUCGUGAa || ||||||| gaaagcucuCACCAAAGCACUa 2 14 235 256 [mm9:11:58804471-58804492:+] 0.4934 141 7 -10.57 -0.4163 MIMAT0005460 mmu-miR-1224 94091 Trim11 gagGUGGA-GGGGUCAGGAGUg | |:| |:|||||||||| uugCUCUUACUCCAGUCCUCAc 2 19 337 358 [mm9:11:58802647-58802668:+] 0.5017 165 7 -31.70 -0.2087 MIMAT0005460 mmu-miR-1224 94091 Trim11 gagGUGGA-GGGGUCAGGAGUg | |:| |:|||||||||| uugCUCUUACUCCAGUCCUCAc 2 19 148 169 [mm9:11:58802647-58802668:+] 0.5017 165 7 -31.70 -0.2347 MIMAT0014815 mmu-miR-3099* 94091 Trim11 guucccGACCU--UCCUUCGACc ||||| | ||||||| auuuuuCUGGACUAUGAAGCUGg 2 16 1735 1757 [mm9:11:58804045-58804067:+] 0.6034 154 7 -22.04 -0.1412 MIMAT0014815 mmu-miR-3099* 94091 Trim11 guucccgaccUUCCUUCGACc || ||||||| uuuaacaguuAAAGAAGCUGc 2 12 429 449 [mm9:11:58802739-58802759:+] 0.5017 147 7 -9.76 -0.2353 MIMAT0014815 mmu-miR-3099* 94091 Trim11 guucccGACCU--UCCUUCGACc ||||| | ||||||| auuuuuCUGGACUAUGAAGCUGg 2 16 1546 1568 [mm9:11:58804045-58804067:+] 0.6034 154 7 -22.04 -0.1579 MIMAT0014815 mmu-miR-3099* 94091 Trim11 guucccgaccUUCCUUCGACc || ||||||| uuuaacaguuAAAGAAGCUGc 2 12 240 260 [mm9:11:58802739-58802759:+] 0.5017 147 7 -9.76 -0.2638 MIMAT0003896 mmu-miR-763 94091 Trim11 cggugaccaagaagGGUCGACc ||||||| agucggggaccagaCCAGCUGg 2 9 1371 1392 [mm9:11:58803870-58803891:+] 0.7013 140 7 -24.67 -0.1027 MIMAT0003896 mmu-miR-763 94091 Trim11 cggugaccaagaagGGUCGACc ||||||| cagagacccaggagCCAGCUGa 2 9 56 77 [mm9:11:58804292-58804313:+] 0.4705 140 7 -15.46 -0.2539 MIMAT0003898 mmu-miR-760 94091 Trim11 aggggUGUCUGGGUCUCGGc |:: | :||||||| ugaaaAUGCAGUCAGAGCCc 2 16 1151 1170 [mm9:11:58803461-58803480:+] 0.4784 147 7 -16.48 -0.1134 MIMAT0003898 mmu-miR-760 94091 Trim11 aggggUGUCUGGGUCUCGGc |:: | :||||||| ugaaaAUGCAGUCAGAGCCc 2 16 962 981 [mm9:11:58803461-58803480:+] 0.4784 147 7 -16.48 -0.1288 MIMAT0003461 mmu-miR-683 94091 Trim11 cuccugUGUCGAA---UGUCGUCc ::||||| ||||||| gauccaGUAGCUUAGAACAGCAGu 2 16 175 198 [mm9:11:58802485-58802508:+] 0.5008 150 7 -16.56 -0.3337 MIMAT0003464 mmu-miR-686 94091 Trim11 agaaguggcagaccCUUCGUUa ||||||| guggccccagagauGAAGCAAu 2 9 446 467 [mm9:11:58804682-58804703:+] 0.5023 140 7 -10.73 -0.2376 MIMAT0003466 mmu-miR-687 94091 Trim11 aguaaCGACGUA--AGGUCCU-AUc |||| || | ||||| || uagggGCUGAAUCCUACAGGAGUAu 2 18 2398 2422 [mm9:11:58804708-58804732:+] 0.5023 120 0 -13.44 -0.1370 MIMAT0003466 mmu-miR-687 94091 Trim11 aguaaCGACGUA--AGGUCCU-AUc |||| || | ||||| || uagggGCUGAAUCCUACAGGAGUAu 2 18 2209 2233 [mm9:11:58804708-58804732:+] 0.5023 120 0 -13.44 -0.1532 MIMAT0003466 mmu-miR-687 94091 Trim11 aguaaCGACGUA--AGGUCCU-AUc |||| || | ||||| || uagggGCUGAAUCCUACAGGAGUAu 2 18 472 496 [mm9:11:58804708-58804732:+] 0.5023 120 0 -13.44 -0.3858 MIMAT0003485 mmu-miR-455* 94091 Trim11 gcuACAUCAGGUUUCCGUGUAu |||| || ||||||| auuUGUAUUC----GGCACAUa 2 20 2428 2445 [mm9:11:58804738-58804755:+] 0.5023 146 7 -14.32 -0.2380 MIMAT0003485 mmu-miR-455* 94091 Trim11 gcuACAUCAGGUUUCCGUGUAu |||| || ||||||| auuUGUAUUC----GGCACAUa 2 20 2239 2256 [mm9:11:58804738-58804755:+] 0.5023 146 7 -14.32 -0.2636 MIMAT0003485 mmu-miR-455* 94091 Trim11 gcuACAUCAGGUUUCCGUGUAu |||| || ||||||| auuUGUAUUC----GGCACAUa 2 20 502 519 [mm9:11:58804738-58804755:+] 0.5023 146 7 -14.32 -0.5834 MIMAT0003498 mmu-miR-708* 94091 Trim11 gaUCUUCGAGUGUCAGAUCAAc | || | | :| ||||||| ucACAA-CCCCUA-UCUAGUUa 2 21 355 374 [mm9:11:58802665-58802684:+] 0.5017 144 7 -9.00 -0.5949 MIMAT0003498 mmu-miR-708* 94091 Trim11 gaUCUUCGAGUGUCAGAUCAAc | || | | :| ||||||| ucACAA-CCCCUA-UCUAGUUa 2 21 166 185 [mm9:11:58802665-58802684:+] 0.5017 144 7 -9.00 -0.6423 MIMAT0003500 mmu-miR-710 94091 Trim11 gaguuGAGA-GGGGUUCUGAACc :||| :||::||||||| cacccUUCUGUCCUGAGACUUGu 2 18 559 581 [mm9:11:58804795-58804817:+] 0.5020 160 7 -21.98 -0.1116 MIMAT0004236 mmu-miR-741 94091 Trim11 agAUGUAUCUUACC-GUAGAGAGu ||:: || ||| |||||||| acUAUGAAG-CUGGCCAUCUCUCa 2 22 1745 1767 [mm9:11:58804055-58804077:+] 0.6034 158 7 -24.16 -0.2028 MIMAT0004236 mmu-miR-741 94091 Trim11 agAUGUAUCUUACC-GUAGAGAGu ||:: || ||| |||||||| acUAUGAAG-CUGGCCAUCUCUCa 2 22 1556 1578 [mm9:11:58804055-58804077:+] 0.6034 158 7 -24.16 -0.2255 MIMAT0004842 mmu-miR-879 94091 Trim11 ccGAAUCUCGAUAUUCG-GAGa ||||| || : |||| ||| caCUUAGUGCCGAAAGCUCUCa 2 20 2150 2171 [mm9:11:58804460-58804481:+] 0.4934 131 0 -16.09 -0.1922 MIMAT0004842 mmu-miR-879 94091 Trim11 ccGAAUCUCGAUAUUCG-GAGa ||||| || : |||| ||| caCUUAGUGCCGAAAGCUCUCa 2 20 1961 1982 [mm9:11:58804460-58804481:+] 0.4934 131 0 -16.09 -0.2139 MIMAT0004842 mmu-miR-879 94091 Trim11 ccGAAUCUCGAUAUUCG-GAGa ||||| || : |||| ||| caCUUAGUGCCGAAAGCUCUCa 2 20 224 245 [mm9:11:58804460-58804481:+] 0.4934 131 0 -16.09 -0.5066 MIMAT0004849 mmu-miR-883a-3p 94091 Trim11 uaUGACUCUCGACAACGUCAAu | | | || | ||||||| acAGUUAAAGAAGCUGCAGUUa 2 21 433 454 [mm9:11:58802743-58802764:+] 0.5017 152 7 -13.41 -0.2058 MIMAT0004849 mmu-miR-883a-3p 94091 Trim11 uaUGACUCUCGACAACGUCAAu | | | || | ||||||| acAGUUAAAGAAGCUGCAGUUa 2 21 244 265 [mm9:11:58802743-58802764:+] 0.5017 152 7 -13.41 -0.2314 MIMAT0004851 mmu-miR-883b-3p 94091 Trim11 uaUGACUCUCUACAACGUCAAu | | | ||| | ||||||| acAGUUAAAGAAGCUGCAGUUa 2 21 433 454 [mm9:11:58802743-58802764:+] 0.5017 160 7 -12.86 -0.2039 MIMAT0004851 mmu-miR-883b-3p 94091 Trim11 uaUGACUCUCUACAACGUCAAu | | | ||| | ||||||| acAGUUAAAGAAGCUGCAGUUa 2 21 244 265 [mm9:11:58802743-58802764:+] 0.5017 160 7 -12.86 -0.2294 MIMAT0004863 mmu-miR-220 94091 Trim11 uucACAGACUGUG-ACAC-CACc || :| |||| |||| ||| cucUGCUUUACACAUGUGUGUGu 2 19 212 234 [mm9:11:58802522-58802544:+] 0.5008 125 0 -15.26 -0.4795 MIMAT0004863 mmu-miR-220 94091 Trim11 uucACAGACUGUG-ACAC-CACc || :| |||| |||| ||| cucUGCUUUACACAUGUGUGUGu 2 19 23 45 [mm9:11:58802522-58802544:+] 0.5008 125 0 -15.26 -0.4519 MIMAT0004868 mmu-miR-343 94091 Trim11 agacccguguAC-UUCCCUcu || |||||| uucuauuuauUGAAAGGGAaa 3 11 678 698 [mm9:11:58804914-58804934:+] 0.5020 121 0 -9.70 -0.1324 MIMAT0004881 mmu-miR-466f-5p 94091 Trim11 guACGUGUACGUGUGUGUGCAu ||| : | :: ||||||| agUGCCUUUCUGACCACACGUg 2 21 106 127 [mm9:11:58804342-58804363:+] 0.5224 148 7 -18.13 -0.1369 MIMAT0004884 mmu-miR-466h 94091 Trim11 auguguGUUCGUGUAC-GUGUGu |||| |||| ||||| gccugcCAAG--CAUGCCACACa 2 17 301 321 [mm9:11:58804537-58804557:+] 0.4536 121 0 -17.97 -0.1333 MIMAT0004888 mmu-miR-493 94091 Trim11 ggaCCGUGUGUCAUCCU-GGAAGu ||| :||| |: || ||||| cggGGC-UACA-UGAGACCCUUCa 2 21 1119 1140 [mm9:11:58803429-58803450:+] 0.4784 120 0 -18.89 -0.1834 MIMAT0004888 mmu-miR-493 94091 Trim11 ggaCCGUGUGUCAUCCU-GGAAGu ||| :||| |: || ||||| cggGGC-UACA-UGAGACCCUUCa 2 21 930 951 [mm9:11:58803429-58803450:+] 0.4784 120 0 -18.89 -0.2068 MIMAT0004862 mmu-miR-877* 94091 Trim11 acCCUCCUCCCU-CUUCUCCUGu || | :| | |||||||| ugGGCGUGGCUACAAAGAGGACg 2 21 418 440 [mm9:11:58804654-58804676:+] 0.5023 147 7 -22.02 -0.1425 MIMAT0005830 mmu-miR-466l 94091 Trim11 uuauacacacGUACAUAAAUAu | | ||||||| ggaguuuuauCUUCUAUUUAUu 2 13 2593 2614 [mm9:11:58804903-58804924:+] 0.5020 144 7 -4.70 -0.2653 MIMAT0005830 mmu-miR-466l 94091 Trim11 uuauacacacGUACAUAAAUAu | | ||||||| ggaguuuuauCUUCUAUUUAUu 2 13 2404 2425 [mm9:11:58804903-58804924:+] 0.5020 144 7 -4.70 -0.2727 MIMAT0005830 mmu-miR-466l 94091 Trim11 uuauacacacGUACAUAAAUAu | | ||||||| ggaguuuuauCUUCUAUUUAUu 2 13 667 688 [mm9:11:58804903-58804924:+] 0.5020 144 7 -4.70 -0.6432 MIMAT0005833 mmu-miR-669d 94091 Trim11 uguaUAUGUA-CGUGUGUGUUCa | ||:| | | ||||||| gaccACACGUGGGAAACACAAGu 2 19 2043 2065 [mm9:11:58804353-58804375:+] 0.5224 153 7 -16.84 -0.2113 MIMAT0005833 mmu-miR-669d 94091 Trim11 uguaUAUGUA-CGUGUGUGUUCa | ||:| | | ||||||| gaccACACGUGGGAAACACAAGu 2 19 1854 1876 [mm9:11:58804353-58804375:+] 0.5224 153 7 -16.84 -0.2346 MIMAT0005833 mmu-miR-669d 94091 Trim11 uguaUAUGUA-CGUGUGUGUUCa | ||:| | | ||||||| gaccACACGUGGGAAACACAAGu 2 19 117 139 [mm9:11:58804353-58804375:+] 0.5224 153 7 -16.84 -0.5479 MIMAT0005834 mmu-miR-466i 94091 Trim11 aucacacauacACACACACAUa |||||||||| ugcuuuacacaUGUGUGUGUAu 2 12 215 236 [mm9:11:58802525-58802546:+] 0.5008 155 7 -16.58 -0.2116 MIMAT0005834 mmu-miR-466i 94091 Trim11 aucACACAU-ACACACACACAUa || | | | | ||||||| agcUGGGCACUCGGCGUGUGUAa 2 20 1576 1598 [mm9:11:58803886-58803908:+] 0.7013 146 7 -14.56 -0.1962 MIMAT0005834 mmu-miR-466i 94091 Trim11 aucacacauacACACACACAUa |||||||||| ugcuuuacacaUGUGUGUGUAu 2 12 26 47 [mm9:11:58802525-58802546:+] 0.5008 155 7 -16.58 -0.2263 MIMAT0005834 mmu-miR-466i 94091 Trim11 aucACACAU-ACACACACACAUa || | | | | ||||||| agcUGGGCACUCGGCGUGUGUAa 2 20 1387 1409 [mm9:11:58803886-58803908:+] 0.7013 146 7 -14.56 -0.2182 MIMAT0005835 mmu-miR-1-2-as 94091 Trim11 accuuACAUUUCU-UCAUACAu |||::: | ||||||| uguucUGUGGGCAUAGUAUGUc 2 17 387 408 [mm9:11:58802886-58802907:+] 0.5010 151 7 -11.23 -0.1108 MIMAT0005835 mmu-miR-1-2-as 94091 Trim11 accuuacaUUUCU-UCAUACAu |:||| ||||||| ucugucucAGAGACAGUAUGUg 2 14 142 163 [mm9:11:58804378-58804399:+] 0.4934 152 7 -13.32 -0.1053 MIMAT0005852 mmu-miR-1194 94091 Trim11 uccUAGAUCGUCAAUGAGUAAg ||:|| | ||||||| aacAUUUA-AAUAAACUCAUUu 2 20 2623 2643 [mm9:11:58804933-58804953:+] 0.5020 145 7 -8.12 -0.7024 MIMAT0005852 mmu-miR-1194 94091 Trim11 uccUAGAUCGUCAAUGAGUAAg ||:|| | ||||||| aacAUUUA-AAUAAACUCAUUu 2 20 2434 2454 [mm9:11:58804933-58804953:+] 0.5020 145 7 -8.12 -0.6470 MIMAT0005852 mmu-miR-1194 94091 Trim11 uccUAGAUCGUCAAUGAGUAAg ||:|| | ||||||| aacAUUUA-AAUAAACUCAUUu 2 20 697 717 [mm9:11:58804933-58804953:+] 0.5020 145 7 -8.12 -1.0919 MIMAT0005853 mmu-miR-669e 94091 Trim11 uacuuGUACGUGUGUGU-UCUGu | || ||:||| |||| uuuguCCUGGCCAUACAGAGACc 2 18 41 63 [mm9:11:58804277-58804299:+] 0.4186 121 0 -13.52 -0.1717 MIMAT0007863 mmu-miR-1902 94091 Trim11 uucaGUACGGAUGACGUGGAGa ::||:| | ||||||| cccaUGUGUCACCAGCACCUCa 2 19 2186 2207 [mm9:11:58804496-58804517:+] 0.4559 154 7 -17.86 -0.1597 MIMAT0007863 mmu-miR-1902 94091 Trim11 uucaGUACGGAUGACGUGGAGa ::||:| | ||||||| cccaUGUGUCACCAGCACCUCa 2 19 1997 2018 [mm9:11:58804496-58804517:+] 0.4559 154 7 -17.86 -0.1782 MIMAT0007863 mmu-miR-1902 94091 Trim11 uucaGUACGGAUGACGUGGAGa ::||:| | ||||||| cccaUGUGUCACCAGCACCUCa 2 19 260 281 [mm9:11:58804496-58804517:+] 0.4559 154 7 -17.86 -0.4391 MIMAT0007873 mmu-miR-1896 94091 Trim11 gaggAGUGGGUGGUAGUCUCUc |: :|:::| ||||||| caagUUCUCUGUC-UCAGAGAc 2 19 135 155 [mm9:11:58804371-58804391:+] 0.5079 148 7 -17.08 -0.1114 MIMAT0007878 mmu-miR-1894-3p 94091 Trim11 gaGGGAAGUGGGAGAG-GGAACg ||| | |:|| || ||||| ugCCCCUAUCUCUGUCUCCUUGc 2 21 318 340 [mm9:11:58802628-58802650:+] 0.5017 128 0 -26.34 -0.1080 MIMAT0007878 mmu-miR-1894-3p 94091 Trim11 gaGGGAAGUGGGAGAG-GGAACg ||| | |:|| || ||||| ugCCCCUAUCUCUGUCUCCUUGc 2 21 129 151 [mm9:11:58802628-58802650:+] 0.5017 128 0 -26.34 -0.1227 MIMAT0009397 mmu-miR-1933-3p 94091 Trim11 uaUCAGUGUGACUA-CCAG-GACc ||| ||| ||| |||| ||| acAGUGCCACGGAUGGGUCGCUGc 2 21 1772 1795 [mm9:11:58804082-58804105:+] 0.6034 131 0 -17.92 -0.1460 MIMAT0009397 mmu-miR-1933-3p 94091 Trim11 uaUCAGUGUGACUA-CCAG-GACc ||| ||| ||| |||| ||| acAGUGCCACGGAUGGGUCGCUGc 2 21 1583 1606 [mm9:11:58804082-58804105:+] 0.6034 131 0 -17.92 -0.1632 MIMAT0009404 mmu-miR-1940 94091 Trim11 uuGACGAG-GUGGAAGA-GUCAGGAG-GUa || ||: | |:| || |||||||| || guCUCCUUGCUCUUACUCCAGUCCUCACAa 2 26 331 360 [mm9:11:58802641-58802670:+] 0.5017 139 0 -27.34 -0.2260 MIMAT0009404 mmu-miR-1940 94091 Trim11 uuGACGAG-GUGGAAGA-GUCAGGAG-GUa || ||: | |:| || |||||||| || guCUCCUUGCUCUUACUCCAGUCCUCACAa 2 26 142 171 [mm9:11:58802641-58802670:+] 0.5017 139 0 -27.34 -0.2537 MIMAT0009425 mmu-miR-1954 94091 Trim11 uugucccAGAGUG--AGACGUCa | | || ||||||| cgaccccUAUGACUAUCUGCAGg 2 15 1865 1887 [mm9:11:58804175-58804197:+] 0.5858 141 7 -13.39 -0.1516 MIMAT0009425 mmu-miR-1954 94091 Trim11 uugucccAGAGUG--AGACGUCa | | || ||||||| cgaccccUAUGACUAUCUGCAGg 2 15 1676 1698 [mm9:11:58804175-58804197:+] 0.5858 141 7 -13.39 -0.1693 MIMAT0009428 mmu-miR-1956 94091 Trim11 aggcgaCUGAGUCGGGACCUGa ||| :| |||||||| acagggGACAUAACCCUGGACc 2 17 1186 1207 [mm9:11:58803685-58803706:+] 0.6830 160 7 -22.68 -0.1039 MIMAT0009435 mmu-miR-1962 94091 Trim11 uacAC-AGGGUCACGGUC-GGAGa || ||::| | |||| |||| ccuUGCUCUUACU-CCAGUCCUCa 2 20 335 357 [mm9:11:58802645-58802667:+] 0.5017 120 0 -15.27 -0.2369 MIMAT0009435 mmu-miR-1962 94091 Trim11 uacAC-AGGGUCACGGUC-GGAGa || ||::| | |||| |||| ccuUGCUCUUACU-CCAGUCCUCa 2 20 146 168 [mm9:11:58802645-58802667:+] 0.5017 120 0 -15.27 -0.2655 MIMAT0009437 mmu-miR-1964 94091 Trim11 uuucggccUCGGGU---CUUCAGcc | |:|| |||||| uuuaaauaAACUCAUUUGAAGUCa- 3 15 701 724 [mm9:11:58804937-58804960:+] 0.5020 121 0 -10.15 -0.1281 MIMAT0009441 mmu-miR-1968 94091 Trim11 ucaggugguaggaauUGUCGACGu |||||||| uguggggccuaggguACAGCUGCa 2 10 1014 1037 [mm9:11:58803324-58803347:+] 0.4963 145 7 -19.12 -0.1900 MIMAT0009441 mmu-miR-1968 94091 Trim11 ucaggugguaggaauUGUCGACGu |||||||| uguggggccuaggguACAGCUGCa 2 10 825 848 [mm9:11:58803324-58803347:+] 0.4963 145 7 -19.12 -0.2141 MIMAT0009445 mmu-miR-1274a 94091 Trim11 acCGCG-GAC-UUGUCCCUGGACu || | ||| | ||||||| caGCUCACUGUCCCUUGGACCUGa 2 21 526 549 [mm9:11:58802836-58802859:+] 0.5010 142 7 -22.59 -0.2609 MIMAT0009445 mmu-miR-1274a 94091 Trim11 acCGCG-GAC-UUGUCCCUGGACu || | ||| | ||||||| caGCUCACUGUCCCUUGGACCUGa 2 21 337 360 [mm9:11:58802836-58802859:+] 0.5010 142 7 -22.59 -0.2917 MIMAT0013803 mmu-miR-2861 94091 Trim11 ggCGGGCGGCGGUCCGGGg |::| || :||||||| caGUUCUCCAUCAGGCCCa 2 18 250 268 [mm9:11:58802560-58802578:+] 0.5013 157 7 -25.84 -0.4087 MIMAT0013803 mmu-miR-2861 94091 Trim11 ggCGGGCGGCGGUCCGGGg |::| || :||||||| caGUUCUCCAUCAGGCCCa 2 18 61 79 [mm9:11:58802560-58802578:+] 0.5013 157 7 -25.84 -0.4396 MIMAT0015641 mmu-miR-3470b 94091 Trim11 ggUCGGACCAGAUGUCUC-ACu ||| ||| | ||||| || guAGCGUGG-CCCCAGAGAUGa 2 20 441 461 [mm9:11:58804677-58804697:+] 0.5023 121 0 -20.80 -0.1633 MIMAT0000134 mmu-miR-124 94091 Trim11 ccguaaGUGGCGCACGGAAu ||| ||||||| gaggagCACACAGUGCCUUu 2 15 95 114 [mm9:11:58804331-58804350:+] 0.5224 146 7 -18.89 -0.2237 MIMAT0000135 mmu-miR-125a-5p 94091 Trim11 aguguccaauuucCCAGAGUCCCu | |||||||| uccccgagacccuGUUCUCAGGGa 2 12 1805 1828 [mm9:11:58804115-58804138:+] 0.6034 147 7 -16.54 -0.2472 MIMAT0000135 mmu-miR-125a-5p 94091 Trim11 aguguccaauuucCCAGAGUCCCu | |||||||| uccccgagacccuGUUCUCAGGGa 2 12 1616 1639 [mm9:11:58804115-58804138:+] 0.6034 147 7 -16.54 -0.2736 MIMAT0000136 mmu-miR-125b-5p 94091 Trim11 aguguucaaucCCAGAGUCCCu | |||||||| cccgagacccuGUUCUCAGGGa 2 12 1807 1828 [mm9:11:58804117-58804138:+] 0.6034 147 7 -20.01 -0.2450 MIMAT0000136 mmu-miR-125b-5p 94091 Trim11 aguguucaaucCCAGAGUCCCu | |||||||| cccgagacccuGUUCUCAGGGa 2 12 1618 1639 [mm9:11:58804117-58804138:+] 0.6034 147 7 -20.01 -0.2712 MIMAT0000142 mmu-miR-9 94091 Trim11 aguaUGUCGAUCUAUUGGUUUCu | |||| | ||||||| gccgAAAGCU--CUCACCAAAGc 2 20 232 252 [mm9:11:58804468-58804488:+] 0.4934 148 7 -13.14 -0.1245 MIMAT0000150 mmu-miR-138 94091 Trim11 gcCG-GACUAAGUGU----UGUGGUCGa || || | || || ||||||| aaGCACUAAGUCCCAUGUGUCACCAGCa 2 22 2175 2202 [mm9:11:58804485-58804512:+] 0.4934 143 7 -16.33 -0.2517 MIMAT0000150 mmu-miR-138 94091 Trim11 gcCG-GACUAAGUGU----UGUGGUCGa || || | || || ||||||| aaGCACUAAGUCCCAUGUGUCACCAGCa 2 22 1986 2013 [mm9:11:58804485-58804512:+] 0.4934 143 7 -16.33 -0.2785 MIMAT0000150 mmu-miR-138 94091 Trim11 gcCG-GACUAAGUGU----UGUGGUCGa || || | || || ||||||| aaGCACUAAGUCCCAUGUGUCACCAGCa 2 22 249 276 [mm9:11:58804485-58804512:+] 0.4934 143 7 -16.33 -0.6111 MIMAT0000158 mmu-miR-146a 94091 Trim11 uuGGGUACCUUAAG---UCAAGAGu | |:|||:| | ||||||| caCACGUGGGAAACACAAGUUCUCu 2 21 2046 2070 [mm9:11:58804356-58804380:+] 0.5079 151 7 -19.43 -0.1047 MIMAT0000158 mmu-miR-146a 94091 Trim11 uuGGGUACCUUAAG---UCAAGAGu | |:|||:| | ||||||| caCACGUGGGAAACACAAGUUCUCu 2 21 1857 1881 [mm9:11:58804356-58804380:+] 0.5079 151 7 -19.43 -0.1175 MIMAT0000158 mmu-miR-146a 94091 Trim11 uuGGGUACCUUAAG---UCAAGAGu | |:|||:| | ||||||| caCACGUGGGAAACACAAGUUCUCu 2 21 120 144 [mm9:11:58804356-58804380:+] 0.5079 151 7 -19.43 -0.3180 MIMAT0000159 mmu-miR-149 94091 Trim11 cccUCACUUCUGUGCCUC-GGUCu ||| |: :| | ||| |||| ugcAGUCAGAGCCCUGAGACCAGa 2 21 1157 1180 [mm9:11:58803467-58803490:+] 0.4784 124 0 -13.96 -0.1437 MIMAT0000159 mmu-miR-149 94091 Trim11 cccUCACUUCUGUGCCUC-GGUCu ||| |: :| | ||| |||| ugcAGUCAGAGCCCUGAGACCAGa 2 21 968 991 [mm9:11:58803467-58803490:+] 0.4784 124 0 -13.96 -0.1627 MIMAT0000160 mmu-miR-150 94091 Trim11 guGACCAU-GUUCCCAACCCUCu :| ||| :|| ||||||| cuUUUGUAUUAAACUUUGGGAGu 2 21 2575 2597 [mm9:11:58804885-58804907:+] 0.5020 151 7 -13.22 -0.7214 MIMAT0000160 mmu-miR-150 94091 Trim11 guGACCAU-GUUCCCAACCCUCu :| ||| :|| ||||||| cuUUUGUAUUAAACUUUGGGAGu 2 21 2386 2408 [mm9:11:58804885-58804907:+] 0.5020 151 7 -13.22 -0.7641 MIMAT0000160 mmu-miR-150 94091 Trim11 guGACCAU-GUUCCCAACCCUCu :| ||| :|| ||||||| cuUUUGUAUUAAACUUUGGGAGu 2 21 649 671 [mm9:11:58804885-58804907:+] 0.5020 151 7 -13.22 -1.0869 MIMAT0000213 mmu-miR-184 94091 Trim11 ugGGAAUAGUCAAGAGG-CAGGu ||||: : | |||| |||| cuCCUUGCUCUUACUCCAGUCCu 2 21 333 355 [mm9:11:58802643-58802665:+] 0.5017 124 0 -20.71 -0.2052 MIMAT0000213 mmu-miR-184 94091 Trim11 ugGGAAUAGUCAAGAGG-CAGGu ||||: : | |||| |||| cuCCUUGCUCUUACUCCAGUCCu 2 21 144 166 [mm9:11:58802643-58802665:+] 0.5017 124 0 -20.71 -0.2308 MIMAT0000219 mmu-miR-24 94091 Trim11 gacaaggacgacUUGACUCGGu | ||||||| caacaagaccccACCUGAGCCa 2 11 718 739 [mm9:11:58803028-58803049:+] 0.5010 142 7 -15.51 -0.2143 MIMAT0000219 mmu-miR-24 94091 Trim11 gacaaggacgacUUGACUCGGu | ||||||| caacaagaccccACCUGAGCCa 2 11 529 550 [mm9:11:58803028-58803049:+] 0.5010 142 7 -15.51 -0.2408 MIMAT0000237 mmu-miR-204 94091 Trim11 uccguauccuacugUUUCCCUu ||||||| ucuucuauuuauugAAAGGGAa 2 9 2602 2623 [mm9:11:58804912-58804933:+] 0.5020 140 7 -10.83 -0.6796 MIMAT0000237 mmu-miR-204 94091 Trim11 uccguauccuacugUUUCCCUu ||||||| ucuucuauuuauugAAAGGGAa 2 9 2413 2434 [mm9:11:58804912-58804933:+] 0.5020 140 7 -10.83 -0.7496 MIMAT0000237 mmu-miR-204 94091 Trim11 uccguAUCCUACUGUUU-CCCUu |:| |||:||| |||| ggauuUGGUCUGAUAAACGGGAa 2 18 2108 2130 [mm9:11:58804607-58804629:+] 0.5030 125 0 -19.01 -0.1059 MIMAT0000237 mmu-miR-204 94091 Trim11 uccguauccuacugUUUCCCUu ||||||| ucuucuauuuauugAAAGGGAa 2 9 676 697 [mm9:11:58804912-58804933:+] 0.5020 140 7 -10.83 -1.0592 MIMAT0000237 mmu-miR-204 94091 Trim11 uccguAUCCUACUGUUU-CCCUu |:| |||:||| |||| ggauuUGGUCUGAUAAACGGGAa 2 18 371 393 [mm9:11:58804607-58804629:+] 0.5030 125 0 -19.01 -0.2834 MIMAT0000237 mmu-miR-204 94091 Trim11 ucCGUAUCCUACUGUUUC-CCUu ||:| || | |||||| ||| ggGCGU-GGCU-ACAAAGAGGAc 2 21 419 439 [mm9:11:58804655-58804675:+] 0.5023 124 0 -20.12 -0.1216 MIMAT0000381 mmu-miR-34c 94091 Trim11 cguuaGUCGAU-UGAUGUGACGGa ::|||: : ||||||||| guggcUGGCUGUGGUACACUGCCc 2 19 585 608 [mm9:11:58804821-58804844:+] 0.5020 157 7 -22.22 -0.1263 MIMAT0000382 mmu-miR-34b-5p 94091 Trim11 uguuaGUCGAU-UAAUGUGACGGa ::|||: : ||||||||| guggcUGGCUGUGGUACACUGCCc 2 19 585 608 [mm9:11:58804821-58804844:+] 0.5020 157 7 -22.59 -0.1263 MIMAT0000526 mmu-miR-15a 94091 Trim11 gugUUUGGUAAUACAC-GACGAu :|::|| || ||| ||||| cagGAGUCAGUA-GUGACUGCUu 2 20 2556 2577 [mm9:11:58804866-58804887:+] 0.5020 125 0 -16.82 -0.3548 MIMAT0000526 mmu-miR-15a 94091 Trim11 gugUUUGGUAAUACAC-GACGAu :|::|| || ||| ||||| cagGAGUCAGUA-GUGACUGCUu 2 20 2367 2388 [mm9:11:58804866-58804887:+] 0.5020 125 0 -16.82 -0.3841 MIMAT0000526 mmu-miR-15a 94091 Trim11 gugUUUGGUAAUACAC-GACGAu :|::|| || ||| ||||| cagGAGUCAGUA-GUGACUGCUu 2 20 630 651 [mm9:11:58804866-58804887:+] 0.5020 125 0 -16.82 -0.7625 MIMAT0000542 mmu-miR-34a 94091 Trim11 ugUUGGUCGAUUC--UGUGACGGu ::|::|||: | |||||||| guGGCUGGCUGUGGUACACUGCCc 2 21 585 608 [mm9:11:58804821-58804844:+] 0.5020 159 7 -24.28 -0.1275 MIMAT0000559 mmu-miR-326 94091 Trim11 ugaCCUCCUUCCCGGGUCUCc | || : || ||||||| acgGUAGCGUGGCCCCAGAGa 2 19 2175 2195 [mm9:11:58804674-58804694:+] 0.5023 154 7 -20.40 -0.1092 MIMAT0000559 mmu-miR-326 94091 Trim11 ugaCCUCCUUCCCGGGUCUCc | || : || ||||||| acgGUAGCGUGGCCCCAGAGa 2 19 438 458 [mm9:11:58804674-58804694:+] 0.5023 154 7 -20.40 -0.2910 MIMAT0004642 mmu-miR-330 94091 Trim11 cggauucUGUGUCCGGGUCUCu :|:::| ||||||| gacgguaGCGUGGCCCCAGAGa 2 16 2174 2195 [mm9:11:58804673-58804694:+] 0.5023 151 7 -21.71 -0.1103 MIMAT0004642 mmu-miR-330 94091 Trim11 cggauucUGUGUCCGGGUCUCu :|:::| ||||||| gacgguaGCGUGGCCCCAGAGa 2 16 437 458 [mm9:11:58804673-58804694:+] 0.5023 151 7 -21.71 -0.2935 MIMAT0000590 mmu-miR-342-3p 94091 Trim11 ugcccacgcuaaAGACACACUCu | |||||||| ucucagagacagUAUGUGUGAGa 2 12 2072 2094 [mm9:11:58804382-58804404:+] 0.4934 147 7 -15.44 -0.1964 MIMAT0000590 mmu-miR-342-3p 94091 Trim11 ugcccacgcuaaAGACACACUCu | |||||||| ucucagagacagUAUGUGUGAGa 2 12 1883 1905 [mm9:11:58804382-58804404:+] 0.4934 147 7 -15.44 -0.2184 MIMAT0000590 mmu-miR-342-3p 94091 Trim11 ugcccacgcuaaAGACACACUCu | |||||||| ucucagagacagUAUGUGUGAGa 2 12 146 168 [mm9:11:58804382-58804404:+] 0.4934 147 7 -15.44 -0.5185 MIMAT0000609 mmu-miR-351 94091 Trim11 guccgaguuucccgAGGAGUCCCu |:||||||| uccccgagacccugUUCUCAGGGa 2 11 1805 1828 [mm9:11:58804115-58804138:+] 0.6034 146 7 -19.17 -0.2450 MIMAT0000609 mmu-miR-351 94091 Trim11 guccgaguuucccgAGGAGUCCCu |:||||||| uccccgagacccugUUCUCAGGGa 2 11 1616 1639 [mm9:11:58804115-58804138:+] 0.6034 146 7 -19.17 -0.2712 MIMAT0000662 mmu-miR-216a 94091 Trim11 agUGUCAACGGUCGA-CUCUAAu ||||| :| ||| |||||| ccACAGUCUUCUGCUGGAGAUUg 2 21 1046 1068 [mm9:11:58803356-58803378:+] 0.4958 136 6 -23.62 -0.1889 MIMAT0000662 mmu-miR-216a 94091 Trim11 agUGUCAACGGUCGA-CUCUAAu ||||| :| ||| |||||| ccACAGUCUUCUGCUGGAGAUUg 2 21 857 879 [mm9:11:58803356-58803378:+] 0.4958 136 6 -23.62 -0.2129 MIMAT0000666 mmu-miR-320 94091 Trim11 agCGGGAGAGUUGG-GU-CGAAAa |:|: |::||| || ||||| gaGUCUGGUUGACCUCAGGCUUUu 2 21 1160 1183 [mm9:11:58803659-58803682:+] 0.5064 123 0 -16.53 -0.1051 MIMAT0000668 mmu-miR-211 94091 Trim11 uccguuuccuacugUUUCCCUu ||||||| ucuucuauuuauugAAAGGGAa 2 9 2602 2623 [mm9:11:58804912-58804933:+] 0.5020 140 7 -10.75 -0.6759 MIMAT0000668 mmu-miR-211 94091 Trim11 uccguuuccuacugUUUCCCUu ||||||| ucuucuauuuauugAAAGGGAa 2 9 2413 2434 [mm9:11:58804912-58804933:+] 0.5020 140 7 -10.75 -0.7459 MIMAT0000668 mmu-miR-211 94091 Trim11 uccguuuccuACUGUUU-CCCUu |||:||| |||| ggauuuggucUGAUAAACGGGAa 2 13 2108 2130 [mm9:11:58804607-58804629:+] 0.5030 120 0 -19.01 -0.1070 MIMAT0000668 mmu-miR-211 94091 Trim11 uccguuuccuacugUUUCCCUu ||||||| ucuucuauuuauugAAAGGGAa 2 9 676 697 [mm9:11:58804912-58804933:+] 0.5020 140 7 -10.75 -1.0565 MIMAT0000668 mmu-miR-211 94091 Trim11 uccguuuccuACUGUUU-CCCUu |||:||| |||| ggauuuggucUGAUAAACGGGAa 2 13 371 393 [mm9:11:58804607-58804629:+] 0.5030 120 0 -19.01 -0.2859 MIMAT0000679 mmu-miR-217 94091 Trim11 aggucagucaaggacUACGUCAu ||||||| agaagguaaaugaaaAUGCAGUc 2 9 1141 1163 [mm9:11:58803451-58803473:+] 0.4784 140 7 -10.85 -0.1397 MIMAT0000679 mmu-miR-217 94091 Trim11 aggucagucaaggacUACGUCAu ||||||| agaagguaaaugaaaAUGCAGUc 2 9 952 974 [mm9:11:58803451-58803473:+] 0.4784 140 7 -10.85 -0.1582 MIMAT0000704 mmu-miR-361 94091 Trim11 caUGGGGACCUCUA--AGACUAUu |:|:||||| | ||||||| gcAUCUCUGGAUUUGGUCUGAUAa 2 21 2289 2312 [mm9:11:58804599-58804622:+] 0.5030 163 7 -23.62 -0.1246 MIMAT0000704 mmu-miR-361 94091 Trim11 caUGGGGACCUCUA--AGACUAUu |:|:||||| | ||||||| gcAUCUCUGGAUUUGGUCUGAUAa 2 21 2100 2123 [mm9:11:58804599-58804622:+] 0.5030 163 7 -23.62 -0.1396 MIMAT0000704 mmu-miR-361 94091 Trim11 caUGGGGACCUCUA--AGACUAUu |:|:||||| | ||||||| gcAUCUCUGGAUUUGGUCUGAUAa 2 21 363 386 [mm9:11:58804599-58804622:+] 0.5030 163 7 -23.62 -0.3575 MIMAT0000741 mmu-miR-377 94091 Trim11 uguuuucaacggAAACACACUa | ||||||| ucucagagacagUAUGUGUGAg 2 11 146 167 [mm9:11:58804382-58804403:+] 0.4934 142 7 -12.39 -0.2153 MIMAT0001542 mmu-miR-449a 94091 Trim11 ugGUCGAUUGUUAUGUGACGGu ::||| ::::||||||||| gcUGGCU-GUGGUACACUGCCc 2 21 588 608 [mm9:11:58804824-58804844:+] 0.5020 162 7 -25.97 -0.1301 MIMAT0003188 mmu-miR-503 94091 Trim11 gacGUCA---UGACAA--GGGCGACGAu |||| || | | :||||||| cuaCAGUGCCACGGAUGGGUCGCUGCUg 2 21 1770 1797 [mm9:11:58804080-58804107:+] 0.6034 142 7 -23.97 -0.1653 MIMAT0003188 mmu-miR-503 94091 Trim11 gacGUCA---UGACAA--GGGCGACGAu |||| || | | :||||||| cuaCAGUGCCACGGAUGGGUCGCUGCUg 2 21 1581 1608 [mm9:11:58804080-58804107:+] 0.6034 142 7 -23.97 -0.1844 MIMAT0003890 mmu-miR-551b 94091 Trim11 gacuuUGGUUCAUACCCAGCg :||| | |||||||| acaguGCCACGGAUGGGUCGc 2 17 1772 1792 [mm9:11:58804082-58804102:+] 0.6034 160 7 -23.24 -0.1041 MIMAT0003890 mmu-miR-551b 94091 Trim11 gacuuUGGUUCAUACCCAGCg :||| | |||||||| acaguGCCACGGAUGGGUCGc 2 17 1583 1603 [mm9:11:58804082-58804102:+] 0.6034 160 7 -23.24 -0.1168 MIMAT0003453 mmu-miR-497 94091 Trim11 auGUUUGGUGUCA-CAC-GACGAc ||:: |||| ||| ||||| caCAGGAGUCAGUAGUGACUGCUu 2 21 2554 2577 [mm9:11:58804864-58804887:+] 0.5020 123 0 -20.52 -0.3576 MIMAT0003453 mmu-miR-497 94091 Trim11 auGUUUGGUGUCA-CAC-GACGAc ||:: |||| ||| ||||| caCAGGAGUCAGUAGUGACUGCUu 2 21 2365 2388 [mm9:11:58804864-58804887:+] 0.5020 123 0 -20.52 -0.3871 MIMAT0003453 mmu-miR-497 94091 Trim11 auGUUUGGUGUCA-CAC-GACGAc ||:: |||| ||| ||||| caCAGGAGUCAGUAGUGACUGCUu 2 21 628 651 [mm9:11:58804864-58804887:+] 0.5020 123 0 -20.52 -0.7662 MIMAT0003460 mmu-miR-449c 94091 Trim11 ggUCGAUCGUUAC---GUGACGGa :|||:|| :|| ||||||| guGGCUGGCUGUGGUACACUGCCc 2 20 585 608 [mm9:11:58804821-58804844:+] 0.5020 158 7 -23.51 -0.1275 MIMAT0003475 mmu-miR-146b 94091 Trim11 ucGGAUACCUUAAG-UCAAGAGu | |: | || | ||||||| caCGUGGGAAACACAAGUUCUCu 2 21 2048 2070 [mm9:11:58804358-58804380:+] 0.5079 147 7 -15.59 -0.1047 MIMAT0003475 mmu-miR-146b 94091 Trim11 ucGGAUACCUUAAG-UCAAGAGu | |: | || | ||||||| caCGUGGGAAACACAAGUUCUCu 2 21 1859 1881 [mm9:11:58804358-58804380:+] 0.5079 147 7 -15.59 -0.1175 MIMAT0003475 mmu-miR-146b 94091 Trim11 ucGGAUACCUUAAG-UCAAGAGu | |: | || | ||||||| caCGUGGGAAACACAAGUUCUCu 2 21 122 144 [mm9:11:58804358-58804380:+] 0.5079 147 7 -15.59 -0.3180 MIMAT0004895 mmu-miR-590-5p 94091 Trim11 gaCGUGAAAAUACU---UA-UUCGAg | |:|||| ||: || ||||| ggGGAUUUUUCUGGACUAUGAAGCUg 2 21 1542 1567 [mm9:11:58804041-58804066:+] 0.6034 123 0 -12.03 -0.1102 MIMAT0005447 mmu-miR-449b 94091 Trim11 cgGUCGAU-UGUUGUGACGGa ::|||: : |||||||| gcUGGCUGUGGUACACUGCCc 2 19 588 608 [mm9:11:58804824-58804844:+] 0.5020 149 7 -25.05 -0.1263 MIMAT0004936 mmu-miR-873 94091 Trim11 ucCUCUGAGUGUUCAAG-GACg |:|| ||||||||| ||| guGGGAAACACAAGUUCUCUGu 2 20 1862 1883 [mm9:11:58804361-58804382:+] 0.5079 139 0 -23.79 -0.1100 MIMAT0004936 mmu-miR-873 94091 Trim11 uccUCUGAGUGUUCAAGGACg |||:|| ::|||||||| cucAGAUUC-UGAGUUCCUGg 2 19 278 297 [mm9:11:58804514-58804533:+] 0.4559 164 7 -20.19 -0.1222 MIMAT0004936 mmu-miR-873 94091 Trim11 ucCUCUGAGUGUUCAAG-GACg |:|| ||||||||| ||| guGGGAAACACAAGUUCUCUGu 2 20 125 146 [mm9:11:58804361-58804382:+] 0.5079 139 0 -23.79 -0.3007 MIMAT0004943 mmu-miR-653 94091 Trim11 gucAUCUCUAACA-AAGUUGUg || ||: || ||||||| uccUACAGG-AGUAUUCAACAu 2 19 2409 2429 [mm9:11:58804719-58804739:+] 0.5023 147 7 -12.97 -0.2504 MIMAT0004943 mmu-miR-653 94091 Trim11 gucAUCUCUAACA-AAGUUGUg || ||: || ||||||| uccUACAGG-AGUAUUCAACAu 2 19 2220 2240 [mm9:11:58804719-58804739:+] 0.5023 147 7 -12.97 -0.2770 MIMAT0004943 mmu-miR-653 94091 Trim11 gucAUCUCUAACA-AAGUUGUg || ||: || ||||||| uccUACAGG-AGUAUUCAACAu 2 19 483 503 [mm9:11:58804719-58804739:+] 0.5023 147 7 -12.97 -0.6041 MIMAT0004943 mmu-miR-653 94091 Trim11 guCAU--CUCUAACAAAGUU-GUg ||| |||| | ||||| || agGUAGGGAGACAGCUUCAAGCAu 2 20 343 366 [mm9:11:58804579-58804602:+] 0.4959 122 0 -14.90 -0.2104

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054832 Trim11 Mus musculus 94091 19536157 0 0 R44134; MOUSE$TRIM11_01; Binding factors: mmu-miR-26a-5p , mmu-miR-26b-5p // 0 0 R44135; MOUSE$TRIM11_02; Binding factors: mmu-miR-34a-5p , mmu-miR-34b-5p , mmu-miR-34c-5p , mmu-miR-449a-5p , mmu-miR-449b , mmu-miR-449c-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim11 mmu-miR-204 beg:687 end:698 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |||||||| &5' --------------AAAGGGAA 3' Trim11 mmu-miR-211 beg:687 end:698 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |||||||| &5' --------------AAAGGGAA 3' Trim11 mmu-miR-669d beg:120 end:140 pic:3' TGTATATGTACGTG-TGTGTTCA 5'& ||.|| . |||||||| &5' ------ACGTGGGAAACACAAGT 3' Trim11 mmu-miR-881 beg:91 end:109 pic:3' AGATAAGTCTTTTC-TGTGTCAA 5'& .||..|| ||||||| &5' -------GGAGGAGCACACAGT- 3' Trim11 mmu-miR-9 beg:235 end:252 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |||| ||||||| &5' ------AGCTCTC--ACCAAAG- 3' Trim11 mmu-miR-1-2-as beg:147 end:164 pic:3' ACCTTACATTTCT-TCATACAT 5'& |.||| |||||||. &5' --------AGAGACAGTATGTG 3' Trim11 mmu-miR-146a beg:125 end:144 pic:3' TTGGGTACCTTAAG--TCAAGAGT 5'& |||| ||||||| &5' -------GGAAACACAAGTTCTC- 3' Trim11 mmu-miR-146b beg:125 end:144 pic:3' TCGGATACCTTAAG--TCAAGAGT 5'& |||| ||||||| &5' -------GGAAACACAAGTTCTC- 3' Trim11 mmu-miR-463star beg:328 end:348 pic:3' TACTACCTGTTGTTTAATCCAT 5'& || ||.|. ..|||||||| &5' --GAGTGATAG-GGATTAGGTA 3' Trim11 mmu-miR-138 beg:259 end:276 pic:3' GCCGGACTAAGTGTT--GTGGTCGA 5'& ||.. ||||||| &5' ----------CATGTGTCACCAGC- 3' Trim11 mmu-miR-763 beg:60 end:77 pic:3' CGGTGACCAAGAAGGGTCGACC 5'& ||| || ||||||| &5' -CCA--GGAG----CCAGCTG- 3' Trim11 mmu-miR-330 beg:441 end:459 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .|. | |||||||| &5' -------GCGTGGCCCCAGAGA 3' Trim11 mmu-miR-140star beg:590 end:614 pic:3' GGCACCAA--GATGGGACACCAT 5'& |.||||| ||.||| |||| &5' CTGTGGTACACTGCCCC-TGGT- 3' Trim11 mcmv-miR-m01-3 beg:15 end:30 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& |||| ||||||| &5' ----------AGTCCCTTCACC- 3' Trim11 mmu-miR-1958 beg:20 end:36 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& |||| |||||||. &5' --------CTTCACCTTTCCTG 3' Trim11 mmu-miR-149 beg:55 end:74 pic:3' CCCTCACTTCTGTG-CCTCGGTCT 5'& .|||| |||||||| &5' -------GAGACCCAGGAGCCAG- 3' Trim11 mmu-miR-455star beg:502 end:520 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& |||| || |||||||| &5' ---TGTATTC----GGCACATA 3' Trim11 mmu-miR-873 beg:278 end:297 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& |||.|| ..|||||||| &5' ---AGATTC-TGAGTTCCTG- 3' Trim11 mghv-miR-M1-7-5p beg:16 end:33 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& | |||.||||||| &5' --------GTCCCTTCACCTTT 3' Trim11 mmu-miR-105 beg:353 end:379 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& .|. ||||||||| | |.|||| &5' GCTTCAAGCATCTCTGGATTTGG 3' Trim11 mmu-miR-1186b beg:248 end:264 pic:3' CACCACGTACGGAAATTAGGGT 5'& || |.||||| &5' ---------GCACTAAGTCCCA 3' Trim11 mmu-miR-1188 beg:289 end:318 pic:3' AGGACCGGGT---TGGA--GTGTGGT 5'& |||||| |. .|| ||..||| &5' TCCTGGGCTGCCTGCCAAGCATGCCA 3' Trim11 mmu-miR-1199 beg:385 end:405 pic:3' GGCGCGCTGGCCC-TGAGTCT 5'& || || || .|||||| &5' ---CGGGAA-GGCTGCTCAGA 3' Trim11 mmu-miR-124 beg:94 end:114 pic:3' CCGTAAGTGGCGCACGGAAT 5'& || ||| ||||||| &5' GGAG--CACACAGTGCCTT- 3' Trim11 mmu-miR-124star beg:546 end:560 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& | || ||||||| &5' ---------CACT-TGAACAC- 3' Trim11 mmu-miR-142-3p beg:592 end:607 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& ||.| |||||.| &5' --------GTGGT--ACACTGC- 3' Trim11 mmu-miR-145star beg:52 end:69 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||| ||||||. &5' -----ACAGAGAC-CCAGGAG- 3' Trim11 mmu-miR-150 beg:651 end:671 pic:3' GTGACCATGTTCCC-AACCCTCT 5'& |||. ||||||| &5' -----GTATTAAACTTTGGGAG- 3' Trim11 mmu-miR-184 beg:171 end:192 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& || | | |||.|||| &5' ---CTGGGCTGGGCTCTGTCC- 3' Trim11 mmu-miR-184 beg:557 end:572 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& ||||| ||.|||| &5' ACCCT---------TCTGTCC- 3' Trim11 mmu-miR-184 beg:134 end:149 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |||||||.|||. &5' ---------AGTTCTCTGTCT- 3' Trim11 mmu-miR-188-3p beg:114 end:131 pic:3' ACGTTTGGGACGTACACCCTC 5'& .||| || |||||| &5' ----GACCA--CACGTGGGA- 3' Trim11 mmu-miR-1894-5p beg:332 end:354 pic:3' TCTCCGTCCA----CCATCCCCTCTC 5'& .||| |||| |||||| &5' -----TAGGGATTAGGTA-GGGAGA- 3' Trim11 mmu-miR-1896 beg:136 end:155 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& .|| .| .| ||||||| &5' ---TTC-TCTGTC-TCAGAGA- 3' Trim11 mmu-miR-1896 beg:40 end:62 pic:3' GAGGAGTGGGTGGTA-GTCTCTC 5'& |. || |. .|||| |||||| &5' -TTGTC-CTGGCCATACAGAGA- 3' Trim11 mmu-miR-1902 beg:259 end:281 pic:3' TTCAGTACGGA-TGA-CGTGGAGA 5'& ||||. | || ||||||| &5' ----CATGTGTCACCAGCACCTC- 3' Trim11 mmu-miR-1902 beg:351 end:371 pic:3' TTCAGTACGGATGACGTGGAGA 5'& || ||.| |||.|||| &5' ----CA-GCTTCAAGCATCTCT 3' Trim11 mmu-miR-1906 beg:138 end:163 pic:3' TCGGGACGGAGTC-CGA-CG-ACGT 5'& |.|||.||||| | |. ||. &5' --CTCTGTCTCAGAGACAGTATGT- 3' Trim11 mmu-miR-1929 beg:510 end:532 pic:3' GAGACGAGATATTTCA-GGATCTT 5'& || | ||||.| ||||||| &5' ----GCAC-ATAAGGGGCCTAGAA 3' Trim11 mmu-miR-193star beg:44 end:65 pic:3' AGTAGAACGGGC-GTTTCTGGGT 5'& || ||| ||.||||||| &5' ----CTGGCCATACAGAGACCCA 3' Trim11 mmu-miR-1944 beg:613 end:634 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||| ||| .| ||||||. &5' ---CAG-ACTGAGCT----GCACAGG- 3' Trim11 mmu-miR-1953 beg:14 end:36 pic:3' GTCTTCGGACTCTT-GAAAGGGT 5'& |||.| ||||||. &5' ---AAGTCCCTTCACCTTTCCT- 3' Trim11 mmu-miR-1956 beg:279 end:301 pic:3' AGGCGACTGAG--TC-GGGACCTGA 5'& ||.|| || .|||||.|| &5' ------GATTCTGAGTTCCTGGGCT 3' Trim11 mmu-miR-1963 beg:388 end:415 pic:3' CTTCCG--GAGTACTAGAGCAGGGT 5'& |||||| |||| .|| .| ||. &5' GAAGGCTGCTCAGAGTCCTGACCT- 3' Trim11 mmu-miR-1967 beg:188 end:209 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& || |||. .|||||||| &5' ----CTCATCCTGGGGATCCTC- 3' Trim11 mmu-miR-1968 beg:608 end:630 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& .||. || || ||||||| &5' GGTTG--CAGACTG---AGCTGCA 3' Trim11 mmu-miR-199a-5p beg:158 end:179 pic:3' CTTGTCCATCAGACT----TGTGACCC 5'& || ||| |||||||| &5' ---------GTGTGAGAGTACACTGGG 3' Trim11 mmu-miR-199bstar beg:158 end:179 pic:3' CTTGTCCATCAGATT----TGTGACCC 5'& || |.| |||||||| &5' ---------GTGTGAGAGTACACTGGG 3' Trim11 mmu-miR-200cstar beg:404 end:428 pic:3' GGTTTGTGACGACCCATTCTGC 5'& || .|| .||||||| |.| &5' CCTGACCTTGCTGGGCGTGGC- 3' Trim11 mmu-miR-2137 beg:288 end:312 pic:3' GAGGGACCCCGA-GGGCGGC-CG 5'& |.||| ||||| ||.||| || &5' -TTCCT-GGGCTGCCTGCCAAGC 3' Trim11 mmu-miR-223 beg:64 end:80 pic:3' ACCCCATAAACT-GTTTGACTGT 5'& || | |.|||||| &5' ----------GAGCCAGCTGACA 3' Trim11 mmu-miR-24 beg:605 end:627 pic:3' GACAAGGA-CGAC--TTGACTCGGT 5'& ||| |.|| .|||||||. &5' -----CCTGGTTGCAGACTGAGCT- 3' Trim11 mmu-miR-27bstar beg:169 end:188 pic:3' CAAGTGGTTAGTCGATTCGAGA 5'& ||| . |||..||||| &5' ---CACTGG---GCTGGGCTCT 3' Trim11 mmu-miR-28 beg:275 end:296 pic:3' GAGTTATCTGACACTCGAGGAA 5'& ||| |||.| ||||.|||| &5' CTC---AGATTCTGAGTTCCT- 3' Trim11 mmu-miR-28star beg:453 end:471 pic:3' AGGTCGTCGAG--TGTTAGATCAC 5'& || || .||||||||| &5' ---AG-AGATGAAGCAATCTAGT- 3' Trim11 mmu-miR-296-3p beg:196 end:219 pic:3' CCTCTCGGAGG--TGGGTTGGGAG 5'& ||.|| ||||| .||| ||| &5' GGGGATCCTCCCCGCCC--CCC-- 3' Trim11 mmu-miR-29bstar beg:56 end:75 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& |.||| | |.|.||||| &5' -AGACC-CA----GGAGCCAGC 3' Trim11 mmu-miR-300 beg:638 end:658 pic:3' CTTCTCTCGAACGGGAACGTAT 5'& || | |||..|||.|| &5' ----AGTGACTGCTTTTGTAT- 3' Trim11 mmu-miR-301a beg:636 end:659 pic:3' CGAAACTGTTATGATAACGTGAC 5'& |. |||| |.|| |||.|.| &5' GTAGTGAC--TGCTTTTGTATT- 3' Trim11 mmu-miR-326 beg:386 end:406 pic:3' TGACCTCCTTCC--CGGGTCTCC 5'& .|||||| ||.||||| &5' -----GGGAAGGCTGCTCAGAG- 3' Trim11 mmu-miR-330 beg:389 end:405 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |||.| ||.||||| &5' ----AAGGCT---GCTCAGAG- 3' Trim11 mmu-miR-331-5p beg:287 end:308 pic:3' CCTAGGGACCC--TGGTATGGATC 5'& .|.|||||| .|| |.|| &5' --GTTCCTGGGCTGCC-TGCC--- 3' Trim11 mmu-miR-335-5p beg:639 end:655 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& || ||||.||| &5' ---------GTGACTGCTTTTG- 3' Trim11 mmu-miR-337-3p beg:463 end:483 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||| .||||.|||||| &5' ----ATCTAGTAGGGGCTGAA 3' Trim11 mmu-miR-33star beg:682 end:701 pic:3' CACTACGTGACA---CCTTTGTAAC 5'& .|.|| ||||||||| &5' ------TATTGAAAGGGAAACATT- 3' Trim11 mmu-miR-340-5p beg:633 end:657 pic:3' TTAGTCAGAGTA-ACG-AAATATT 5'& |.||||| ||| |||.|| &5' AGTCAGTAGTGACTGCTTTTGTA- 3' Trim11 mmu-miR-342-3p beg:148 end:169 pic:3' TGCCCACGCTAAAG-ACACACTCT 5'& | || ||||||||| &5' ------GAGACAGTATGTGTGAGA 3' Trim11 mmu-miR-342-5p beg:264 end:281 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& .|||| ||||||.| &5' ----GTCACC---AGCACCTC- 3' Trim11 mmu-miR-343 beg:334 end:354 pic:3' AGACCCGTGTACTTCCCTCT 5'& ||| | ||||||| &5' ---GGGATTAGGTAGGGAGA 3' Trim11 mmu-miR-34a beg:586 end:608 pic:3' TGTTGGTCGAT-TC-TGTGACGGT 5'& ..| |||. .| |||||||| &5' --GGCTGGCTGTGGTACACTGCC- 3' Trim11 mmu-miR-34b-5p beg:588 end:608 pic:3' TGTTAGTCGATTA-ATGTGACGGA 5'& .|||. ||||||||| &5' ------GGCTGTGGTACACTGCC- 3' Trim11 mmu-miR-34c beg:588 end:608 pic:3' CGTTAGTCGAT-TGATGTGACGGA 5'& .|||. . ||||||||| &5' ------GGCTGTGGTACACTGCC- 3' Trim11 mmu-miR-361 beg:364 end:387 pic:3' CATGGGGACCTCTA--AGACTATT 5'& |.|.||||| |||||||| &5' --ATCTCTGGATTTGGTCTGATAA 3' Trim11 mmu-miR-361 beg:566 end:588 pic:3' CATGGGGACCTCTA---AGACTATT 5'& .||| |||| ||||.|. &5' ----TCCT-GAGACTTGTCTGGTG- 3' Trim11 mmu-miR-381 beg:637 end:658 pic:3' TGTCTCTCGAACGGGAACATAT 5'& .|| || | |||..|||||| &5' -TAGTGA-C-TGCTTTTGTAT- 3' Trim11 mmu-miR-382 beg:349 end:361 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& .|||.|||| &5' -------------GACAGCTTC 3' Trim11 mmu-miR-383 beg:96 end:119 pic:3' TCG-GTGTCAGTGGAAGACTAGA 5'& ||| |||||| |.|||||| &5' AGCACACAGTGCCTTTCTGA--- 3' Trim11 mmu-miR-449a beg:586 end:608 pic:3' TGGTCGATTGTTATGTGACGGT 5'& .| ||| . .||||||||| &5' GCTGGCT-GTGGTACACTGCC- 3' Trim11 mmu-miR-449b beg:586 end:608 pic:3' CGGTCGATTGT-TGTGACGGA 5'& || |||. |||||||| &5' GCTGGCTGTGGTACACTGCC- 3' Trim11 mmu-miR-449b beg:66 end:86 pic:3' CGGTCGATTGTTGTGACGGA 5'& |||||||.||| | |||. &5' GCCAGCTGACATC-CTGT-- 3' Trim11 mmu-miR-449c beg:586 end:608 pic:3' GGTCGATCGTTAC---GTGACGGA 5'& .|||.|| .|| ||||||| &5' --GGCTGGCTGTGGTACACTGCC- 3' Trim11 mmu-miR-465a-3p beg:600 end:615 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.| |||||.|. &5' -CTGC---------CCCTGGTT 3' Trim11 mmu-miR-465a-3p beg:29 end:40 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||||.|| &5' --------------TCCTGGTC 3' Trim11 mmu-miR-465b-3p beg:600 end:615 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.| |||||.|. &5' -CTGC---------CCCTGGTT 3' Trim11 mmu-miR-465b-3p beg:29 end:40 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||||.|| &5' --------------TCCTGGTC 3' Trim11 mmu-miR-465c-3p beg:29 end:40 pic:3' AGATGAATCTTTCCGGGACTAG 5'& .||||.|| &5' --------------TCCTGGTC 3' Trim11 mmu-miR-467bstar beg:154 end:166 pic:3' CACAACCACACACATACATATA 5'& ||||||.|. &5' ------------GTATGTGTG- 3' Trim11 mmu-miR-467e beg:536 end:555 pic:3' TGTATATGTACG-AGTGTGAATA 5'& .|| | ||||||. &5' ------GCAGAAATGACACTTG- 3' Trim11 mmu-miR-486 beg:471 end:493 pic:3' GAGCCCCGTCG-AGTCATGTCCT 5'& ||||| || ||||||| &5' ---GGGGCTGAATCC-TACAGGA 3' Trim11 mmu-miR-491 beg:187 end:214 pic:3' GGAGTACCTTCCCA---AGGGGTGA 5'& |||||| .||| |||||.| &5' CCTCATCCTGGGGATCCTCCCCGC- 3' Trim11 mmu-miR-503star beg:220 end:243 pic:3' GGTCCGTCAC--CTTTGTTATGAG 5'& ||| .|||| |||| .||| &5' CCACTTAGTGCCGAAA----GCTC 3' Trim11 mmu-miR-540-3p beg:102 end:121 pic:3' GGTCCTAGCTGG--AGACTGGA 5'& ||| .|| ||||||| &5' -CAGT----GCCTTTCTGACC- 3' Trim11 mmu-miR-541 beg:262 end:288 pic:3' TCACACTGGTTGT--AGTCTTAGGGAA 5'& |||| ||||.|| ||||| ||. &5' -GTGTCACCAGCACCTCAGATTCT--- 3' Trim11 mmu-miR-665 beg:279 end:297 pic:3' TCCCT-GGAGTCGGAGGACCA 5'& || .|| || .|||||| &5' ---GATTCTGAG-TTCCTGG- 3' Trim11 mmu-miR-666-5p beg:287 end:307 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& |.|| | .|| ||||.|| &5' -GTTC-CTGGGC--TGCCTGC- 3' Trim11 mmu-miR-667 beg:574 end:597 pic:3' GAACCCGACCCACCGTCC-ACAGT 5'& |||| || |||||| || ||| &5' CTTGT-CT-GGTGGCTGGCTGT-- 3' Trim11 mmu-miR-673-3p beg:307 end:331 pic:3' CCACGTGTCTTGAGTC-GGGGCCT 5'& |||.. || ||| |||.||| &5' ---GCATGCCACACAGTCCCTGGA 3' Trim11 mmu-miR-679 beg:302 end:323 pic:3' TGGTTCTCAGTGGAGTGTCAGG 5'& .||||| ..|| ||||||| &5' GCCAAGCA-TGCCACACAGTC- 3' Trim11 mmu-miR-684 beg:113 end:134 pic:3' AACTGAACTTC-CCTTTTGA 5'& |||| | ||.|||| &5' -TGACCACACGTGGGAAAC- 3' Trim11 mmu-miR-684 beg:684 end:700 pic:3' AACTGAACTTCCCTTTTGA 5'& ||||| ||.|||| &5' -----TTGAAAGGGAAAC- 3' Trim11 mmu-miR-693-3p beg:384 end:400 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& ||. |||.||||| &5' --------ACGG--GAAGGCTGC 3' Trim11 mmu-miR-708 beg:268 end:296 pic:3' GGGTCGA----TCTAACATTCGAGGAA 5'& ||||| ||||| |.||.|||| &5' -CCAGCACCTCAGATTCTGAGTTCCT- 3' Trim11 mmu-miR-709 beg:135 end:150 pic:3' AGGAGGAC-GGAGACGGAGG 5'& | .|||||.||| &5' -------GTTCTCTGTCTC- 3' Trim11 mmu-miR-710 beg:561 end:581 pic:3' GAGTTGAGA-GGGGTTCTGAACC 5'& .||| .|| ||||||| &5' -----TTCTGTCCTGAGACTTG- 3' Trim11 mmu-miR-873 beg:90 end:113 pic:3' TCCTCTGAGTGT-TCAAGGACG 5'& |||||. |||| ||| ||| &5' AGGAGGAGCACACAGTGCCT-- 3' Trim11 mmu-miR-877star beg:420 end:440 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& | | || |||||||| &5' -GCGTGGCTACA-AAGAGGAC- 3' Trim11 mmu-miR-93star beg:385 end:407 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& ||||||| ||| |||||| ||| &5' CGGGAAG-GCT-GCTCAG-AGT 3' Trim11 mmu-miR-653 beg:487 end:517 pic:3' GTCATCTCT---------AACA-AAGTTGTG 5'& .||| |||| |||..||| &5' ----GGAGTATTCAACATTTGTATTCGGCAC 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim11 RAID00017934 mmu-miR-7226-5p miRNA MIMAT0028420 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID00268063 mmu-miR-184-3p miRNA MIMAT0000213 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID00394403 mmu-miR-124-3p miRNA MIMAT0000134 Trim11 mRNA 94091 Prediction 0.2202 Trim11 RAID00503774 mmu-miR-7222-3p miRNA MIMAT0028413 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID00751110 mmu-miR-449a-5p miRNA MIMAT0001542 Trim11 mRNA 94091 CLIP-seq//Prediction 0.6308 Trim11 RAID00760734 mmu-miR-449b miRNA MIMAT0005447 Trim11 mRNA 94091 CLIP-seq//Prediction 0.6308 Trim11 RAID00883855 mmu-miR-149-5p miRNA MIMAT0000159 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID00929619 mmu-miR-5127 miRNA MIMAT0020638 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01161028 mmu-miR-6537-5p miRNA MIMAT0025581 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01186608 mmu-miR-351-5p miRNA MIMAT0000609 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01233509 mmu-miR-146b-5p miRNA MIMAT0003475 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01325515 mmu-miR-342-3p miRNA MIMAT0000590 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01441019 mmu-miR-204-5p miRNA MIMAT0000237 Trim11 mRNA 94091 Prediction 0.2202 Trim11 RAID01472368 mmu-miR-377-3p miRNA MIMAT0000741 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01604048 mmu-miR-146a-5p miRNA MIMAT0000158 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01740285 mmu-miR-125a-5p miRNA MIMAT0000135 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01745446 mmu-miR-298-5p miRNA MIMAT0000376 Trim11 mRNA 94091 CLIP-seq 0.5483 Trim11 RAID01908316 mmu-miR-1306-5p miRNA MIMAT0019136 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID01967144 mmu-miR-590-5p miRNA MIMAT0004895 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02061804 mmu-miR-34b-5p miRNA MIMAT0000382 Trim11 mRNA 94091 CLIP-seq//Prediction 0.6308 Trim11 RAID02206033 mmu-miR-15a-5p miRNA MIMAT0000526 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02248229 mmu-miR-365-1-5p miRNA MIMAT0017077 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02288098 mmu-miR-331-3p miRNA MIMAT0000571 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02365396 mmu-miR-21b miRNA MIMAT0025121 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02379973 mmu-miR-138-5p miRNA MIMAT0000150 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02439932 mmu-miR-9-5p miRNA MIMAT0000142 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02457860 mmu-miR-365-2-5p miRNA MIMAT0017179 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02460615 mmu-miR-330-5p miRNA MIMAT0004642 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02500765 mmu-miR-34a-5p miRNA MIMAT0000542 Trim11 mRNA 94091 CLIP-seq//Prediction 0.6308 Trim11 RAID02539155 mmu-miR-217-5p miRNA MIMAT0000679 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02543056 mmu-miR-653-5p miRNA MIMAT0004943 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02686758 mmu-miR-551b-3p miRNA MIMAT0003890 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02707552 mmu-miR-34c-5p miRNA MIMAT0000381 Trim11 mRNA 94091 CLIP-seq//Prediction 0.6308 Trim11 RAID02743313 mmu-miR-7670-3p miRNA MIMAT0029847 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02765041 mmu-miR-320-3p miRNA MIMAT0000666 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID02792887 mmu-miR-150-5p miRNA MIMAT0000160 Trim11 mRNA 94091 Prediction 0.2202 Trim11 RAID02852008 mmu-miR-211-5p miRNA MIMAT0000668 Trim11 mRNA 94091 Prediction 0.2202 Trim11 RAID02861120 mmu-miR-873a-5p miRNA MIMAT0004936 Trim11 mRNA 94091 Prediction 0.2202 Trim11 RAID03003115 mmu-miR-124-5p miRNA MIMAT0004527 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03088792 mmu-miR-497a-5p miRNA MIMAT0003453 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03093009 mmu-miR-24-3p miRNA MIMAT0000219 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03257246 mmu-miR-326-3p miRNA MIMAT0000559 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03380146 mmu-miR-361-5p miRNA MIMAT0000704 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03449711 mmu-miR-449c-5p miRNA MIMAT0003460 Trim11 mRNA 94091 CLIP-seq//Prediction 0.6308 Trim11 RAID03450693 mmu-miR-199b-3p miRNA MIMAT0004667 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03636137 mmu-miR-3544-5p miRNA MIMAT0022353 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03652675 mmu-miR-125b-5p miRNA MIMAT0000136 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03703966 mmu-miR-6921-5p miRNA MIMAT0027742 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03884843 mmu-miR-216a-5p miRNA MIMAT0000662 Trim11 mRNA 94091 Prediction 0.1828 Trim11 RAID03942931 mmu-miR-503-5p miRNA MIMAT0003188 Trim11 mRNA 94091 Prediction 0.1828