DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rnft1 ATTTA 153-1340 1541-1545;1726-1730;1846-1850;1919-1923

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 76892 Rnft1 aucUC-GUCGUUUAUUACU-AAGc || |||| :| ||||| ||| gaaAGUCAGCUGA-AAUGACUUCc 2 20 1540 1562 [mm9:11:86310997-86311019:+] 0.5273 124 0 -9.90 -0.4090 MIMAT0004523 mmu-miR-29b* 76892 Rnft1 auuuggugGUAUACUUUGGUCg || | ||||||| uuuaaagaCAGACUAAACCAGu 2 15 1184 1205 [mm9:11:86310641-86310662:+] 0.5160 146 7 -12.54 -0.3149 MIMAT0004523 mmu-miR-29b* 76892 Rnft1 auuUGGUGGUAU-ACUUUGGUCg ::| |:| | ||||||| cuuGUCUCUAAACAAAAACCAGa 2 20 1878 1900 [mm9:11:86311335-86311357:+] 0.5076 142 7 -11.32 -0.6023 MIMAT0000129 mmu-miR-30a* 76892 Rnft1 cgacguUUGUAGGCUGACUUUc |::| : ||||||| auuaucAGUAAUAAACUGAAAc 2 17 1925 1946 [mm9:11:86311382-86311403:+] 0.5144 144 7 -8.07 -0.3450 MIMAT0004526 mmu-miR-101a* 76892 Rnft1 cguagucgUGACACUAUUGACu | | | ||||||| cgggagaaAGUUUUAUAACUGu 2 15 2890 2911 [mm9:11:86312347-86312368:+] 0.5366 146 7 -9.28 -0.7528 MIMAT0004526 mmu-miR-101a* 76892 Rnft1 cguAGUCGU-GACACUA-UUGACu ||| :| | || || ||||| uacUCAUUAUCAGUAAUAAACUGa 2 20 1920 1943 [mm9:11:86311377-86311400:+] 0.5144 122 0 -14.55 -0.5769 MIMAT0000217 mmu-miR-188-5p 76892 Rnft1 gggAGGUGGUACGUUCCCUAc |: : :|| |||||||| uugUUAGAUAUACAAGGGAUg 2 19 1482 1502 [mm9:11:86310939-86310959:+] 0.5265 154 7 -18.26 -0.2102 MIMAT0004541 mmu-miR-188-3p 76892 Rnft1 acguuUGGGACGUAC-ACCCUc |: ||| ||| ||||| aguuuAUGCUGAAUGCUGGGAu 2 17 1112 1133 [mm9:11:86310569-86310590:+] 0.5010 124 0 -16.81 -0.1459 MIMAT0004547 mmu-miR-203* 76892 Rnft1 acaacUUGACAGUUCUUGGUGa |::| | | ||||||| gugauAGUUAUGAUGAACCACu 2 18 2529 2550 [mm9:11:86311986-86312007:+] 0.4998 153 7 -16.29 -0.4580 MIMAT0000240 mmu-miR-207 76892 Rnft1 cucccuccUC-UCGGUCCUCUUCg || | | |||||||| uuaucaucAGUAACAAGGAGAAGu 2 16 993 1016 [mm9:11:86310450-86310473:+] 0.5035 150 7 -15.04 -0.4448 MIMAT0000249 mmu-miR-30e* 76892 Rnft1 cgACAUUUGUAGGCUGACUUUc | | |::| : ||||||| auUAUCAGUAAUAAACUGAAAc 2 21 1925 1946 [mm9:11:86311382-86311403:+] 0.5144 148 7 -7.10 -0.3450 MIMAT0000375 mmu-miR-297a 76892 Rnft1 uguACGUGUACGUGUGU-AUGUa || ||||| | ||| |||| uuuUGAACAUG-A-ACAUUACAu 2 20 2648 2668 [mm9:11:86312105-86312125:+] 0.5147 123 0 -14.18 -0.4623 MIMAT0004579 mmu-miR-302a* 76892 Rnft1 cguucauguuggUGCAAAUUCa | ||||||| ucaguuucucagAAGUUUAAGu 2 11 124 145 [mm9:11:86309581-86309602:+] 0.4831 142 7 -11.86 -0.1420 MIMAT0004620 mmu-let-7a* 76892 Rnft1 ccUUUCU-GUCA-UCU-AAC-AUAUc || || || | ||| ||| |||| aaAAUGACCACUAAGAUUUGUUAUAu 2 21 2843 2868 [mm9:11:86312300-86312325:+] 0.5366 121 0 -4.88 -0.7304 MIMAT0004622 mmu-let-7c-1* 76892 Rnft1 ccuuucgaUCUUCCAACAUGUc | || ||||||| cguuaaugAAAAAAUUGUACAu 2 15 2966 2987 [mm9:11:86312423-86312444:+] 0.5348 146 7 -6.40 -0.6531 MIMAT0004622 mmu-let-7c-1* 76892 Rnft1 ccuuuCGAUCUUCCAACAUGUc |||| ||||||| uauuuGCUAAUUUUUUGUACAa 2 18 2623 2644 [mm9:11:86312080-86312101:+] 0.5147 145 7 -9.30 -1.0647 MIMAT0005439 mmu-let-7c-2* 76892 Rnft1 ccUUUCU-GUCA-UCU-AAC-AUAUc || || || | ||| ||| |||| aaAAUGACCACUAAGAUUUGUUAUAu 2 21 2843 2868 [mm9:11:86312300-86312325:+] 0.5366 121 0 -4.88 -0.7304 MIMAT0004625 mmu-miR-16* 76892 Rnft1 agucgucgugucAGUUAUGACc |:||||||| ggaugauauauuUUAAUACUGu 2 11 515 536 [mm9:11:86309972-86309993:+] 0.5849 146 7 -9.24 -0.9625 MIMAT0004634 mmu-miR-31* 76892 Rnft1 cuaccgUUAUACAACCGUAUCGu || || || ||||||: agaauaAAGAU-UUUGCAUAGUa 2 18 338 359 [mm9:11:86309795-86309816:+] 0.5486 139 0 -9.36 -0.1172 MIMAT0000544 mmu-miR-129-3p 76892 Rnft1 uacgaaaaaccccaUUCCCGAa ||||||| cuuuaccaugacuaAAGGGCUg 2 9 948 969 [mm9:11:86310405-86310426:+] 0.5284 140 7 -10.75 -0.1798 MIMAT0004638 mmu-miR-323-5p 76892 Rnft1 cgcuuGCGCGGUGCCUGGUGGa | :|:: | ||||||| ccuguCUUGUUCCAGACCACCu 2 18 1838 1859 [mm9:11:86311295-86311316:+] 0.5005 149 7 -20.65 -0.1460 MIMAT0004640 mmu-miR-325 76892 Rnft1 aacUAUCCUCCACG--AGUUAUUu ||: || | : ||||||| gaaAUGUGAUUUCUUAUCAAUAAu 2 20 243 266 [mm9:11:86309700-86309723:+] 0.5451 142 7 -7.05 -0.5676 MIMAT0000571 mmu-miR-331-3p 76892 Rnft1 aagauccuaUCCGGGUCCCCg || :||||||| accaucuccAGUUCCAGGGGa 2 13 2136 2156 [mm9:11:86311593-86311613:+] 0.5007 148 7 -19.73 -0.1495 MIMAT0004647 mmu-miR-338-5p 76892 Rnft1 guGAGUCGUGGUC-C-UAUAACAa ||| :|:: | | ||||||| caCUCUAUAUUUGUGUAUAUUGUa 2 21 1350 1373 [mm9:11:86310807-86310830:+] 0.4917 146 7 -13.62 -0.4329 MIMAT0004656 mmu-miR-345-3p 76892 Rnft1 cagagGUCUGGGGAUCAAGUCc || :::: |||||||| cgagaCAUGUUUAUAGUUCAGu 2 18 107 128 [mm9:11:86309564-86309585:+] 0.4831 153 7 -15.03 -0.4636 MIMAT0000605 mmu-miR-350 76892 Rnft1 cuUUCACAUACCCGAAACACUu :|| | | | | ||||||| agGAGAGAAAGUGAUUUGUGAu 2 21 1504 1525 [mm9:11:86310961-86310982:+] 0.5454 156 7 -14.56 -0.4528 MIMAT0000605 mmu-miR-350 76892 Rnft1 cuuucacaUACCCGAAACACUu || :||||||| uuuuucagAUUUAUUUUGUGAu 2 15 2512 2533 [mm9:11:86311969-86311990:+] 0.5003 142 7 -8.12 -0.6546 MIMAT0004663 mmu-miR-200c* 76892 Rnft1 ggUUUG--UGA-CGACCCAUUCUGc |||| |:| || | ||||||| aaAAACAAAUUAGCCGUGUAAGACa 2 21 1023 1047 [mm9:11:86310480-86310504:+] 0.5010 158 7 -13.96 -0.2815 MIMAT0004666 mmu-miR-33* 76892 Rnft1 cacUACGUGACACCUUUGUAAc || ||| |||||||| guaAUAAACU---GAAACAUUu 2 20 1932 1950 [mm9:11:86311389-86311407:+] 0.5144 147 7 -7.87 -0.2025 MIMAT0004670 mmu-miR-7a* 76892 Rnft1 auaccgucUGACACUAAACAAc ||| |||||||| aaaugaccACUAAGAUUUGUUa 2 15 2844 2865 [mm9:11:86312301-86312322:+] 0.5366 154 7 -10.28 -0.6686 MIMAT0004704 mmu-miR-335-3p 76892 Rnft1 ccaguccucGUUAUUACUUUUu |: ||||||||| uaucuaacaCGUUAAUGAAAAa 2 14 2957 2978 [mm9:11:86312414-86312435:+] 0.5348 153 7 -10.86 -0.9029 MIMAT0001090 mmu-miR-409-3p 76892 Rnft1 uccccaaguggcuCGUUGUAAg |||||||| ccuuaauaaauauGCAACAUUu 2 10 183 204 [mm9:11:86309640-86309661:+] 0.5451 145 7 -9.97 -0.5462 MIMAT0001637 mmu-miR-452 76892 Rnft1 cagagucaaaggagaCGUUUGu |||||| ugaauauuuuuaaaaGCAAACa 2 8 2775 2796 [mm9:11:86312232-86312253:+] 0.5378 120 6 -9.08 -0.1086 MIMAT0002106 mmu-miR-465a-5p 76892 Rnft1 aguguAGUCACGGU-AAGAUUUAu | | || | |||||||| auuuuUAAAUGAAAGUUCUAAAUg 2 19 443 466 [mm9:11:86309900-86309923:+] 0.5584 149 7 -11.60 -0.5006 MIMAT0004217 mmu-miR-465a-3p 76892 Rnft1 agAUGAAUCUUUCCGGGAC-UAg || |: ||: |||||| || uuUAAGUGCAAGAGCCCUGCAUu 2 21 139 161 [mm9:11:86309596-86309618:+] 0.4831 124 0 -14.61 -0.1781 MIMAT0004759 mmu-miR-466a-5p 76892 Rnft1 auACAUGUACA--UGUGUGUGUAu ||||::||| |||||||||| auUGUAUGUGUCCACACACACAUa 2 21 1368 1391 [mm9:11:86310825-86310848:+] 0.4928 179 7 -24.55 -0.2379 MIMAT0004759 mmu-miR-466a-5p 76892 Rnft1 auacauGUACAUGUGU-GUGUAu || || ||| ||||| cucaacCAGAUAAACACCACAUc 2 17 1304 1326 [mm9:11:86310761-86310783:+] 0.4906 120 0 -10.09 -0.2845 MIMAT0002107 mmu-miR-466a-3p 76892 Rnft1 agAAUACACACGCACAUACAUAu ||:| | :|| ||||||| aaUUGUACAUCUGU-UAUGUAUg 2 22 2978 2999 [mm9:11:86312435-86312456:+] 0.5348 151 7 -9.51 -0.2797 MIMAT0002109 mmu-miR-468 76892 Rnft1 guCUGUGUGCGUGUAGUCA-GUAu |||| || :| | |||| ||| aaGACAGAC-UAAACCAGUACAUg 2 22 1188 1210 [mm9:11:86310645-86310667:+] 0.5310 127 0 -16.98 -0.1414 MIMAT0002889 mmu-miR-532-5p 76892 Rnft1 ugCCAGGAUGUGAGUUCCG-UAc || ::| : | |||||| || guGGAUUUUUUCACAAGGCUAUc 2 21 1674 1696 [mm9:11:86311131-86311153:+] 0.5007 120 0 -14.05 -0.1956 MIMAT0003173 mmu-miR-547 76892 Rnft1 gagugaGUUUCUA-CA-UGGUUc :||:||| || ||||| gcuuaaUAAGGAUAGUGACCAAg 2 16 1211 1233 [mm9:11:86310668-86310690:+] 0.5252 122 0 -20.40 -0.1459 MIMAT0003186 mmu-miR-369-3p 76892 Rnft1 uuucuAGUUGGUACAUAAUAa |:||: |||||||| auauuUUAAUACUGUAUUAUg 2 17 522 542 [mm9:11:86309979-86309999:+] 0.5616 156 7 -7.42 -0.3596 MIMAT0003896 mmu-miR-763 76892 Rnft1 cgGUGACCAAGAAGGGUCGACc ||:| || | :||||||| aaCAUUAGUCAUCUCCAGCUGa 2 21 858 879 [mm9:11:86310315-86310336:+] 0.5018 160 7 -19.10 -0.3770 MIMAT0003477 mmu-miR-669a 76892 Rnft1 uguACUUGUACGUGUGUGU-UGa || |::||: |||||| || uauUGUAUGUGUCCACACACACa 2 20 1367 1389 [mm9:11:86310824-86310846:+] 0.4928 131 0 -14.95 -0.1733 MIMAT0003477 mmu-miR-669a 76892 Rnft1 uguacuugUACGUGUGUGU-UGa ||||| ||||| || cacacaugAUGCAGACACAUACa 2 15 2191 2213 [mm9:11:86311648-86311670:+] 0.5007 126 0 -20.33 -0.1801 MIMAT0003449 mmu-miR-488* 76892 Rnft1 aaCUCUCACGAUAAUAGACCc || | | | |||||||| aaGACACUAAUUUUAUCUGGu 2 20 24 44 [mm9:11:86309481-86309501:+] 0.4987 155 7 -11.74 -0.4119 MIMAT0003454 mmu-miR-423-3p 76892 Rnft1 ugACUCCCCGGAGUCUGGC-UCGa ||:| | :| || |||| ||| ugUGGGUGUUCCCACACCGCAGCg 2 22 2108 2131 [mm9:11:86311565-86311588:+] 0.5007 129 0 -25.73 -0.1208 MIMAT0003471 mmu-miR-692 76892 Rnft1 cucACUCCGCGA-GUUUCUCUa | :||| | :||||||| accUAGGGCUAUAUAAAGAGAu 2 19 1856 1877 [mm9:11:86311313-86311334:+] 0.5009 149 7 -16.61 -0.1778 MIMAT0003472 mmu-miR-693-5p 76892 Rnft1 cuUUUGA--AAGCCUACA-CCGAc ||| | ||:| |||| |||| ugAAAGUGAUUUGAAUGUGGGCUg 2 20 674 697 [mm9:11:86310131-86310154:+] 0.5197 126 0 -18.94 -0.1588 MIMAT0004826 mmu-miR-146b* 76892 Rnft1 uggucuuGACUCAGGGAUCCCg | || ||||||| cuuguucCAGACCACCUAGGGc 2 16 1843 1864 [mm9:11:86311300-86311321:+] 0.5005 143 7 -23.46 -0.1324 MIMAT0004827 mmu-miR-297b-3p 76892 Rnft1 auACCCAUACACACAUACAUAu || || ||| ||||||| auUGUACAUCUGU-UAUGUAUg 2 21 2979 2999 [mm9:11:86312436-86312456:+] 0.5348 154 7 -8.84 -0.2773 MIMAT0003493 mmu-miR-703 76892 Rnft1 aagaAAGGAAGACU-UCCAAAa | ::| |||| |||||| guacUGUUUCCUGACAGGUUUu 2 18 315 336 [mm9:11:86309772-86309793:+] 0.5451 125 6 -14.02 -0.2470 MIMAT0003496 mmu-miR-706 76892 Rnft1 aaAAAACUC-UGUCCCAAAGAGa ||| || || ||||||| ugUUUAUAGUUCA--GUUUCUCa 2 21 114 134 [mm9:11:86309571-86309591:+] 0.4831 144 7 -9.11 -0.4254 MIMAT0003496 mmu-miR-706 76892 Rnft1 aaaaaacucuGUCCCAAAGAGa || ||||||| uaacacuuauCACAGUUUCUCc 2 13 1591 1612 [mm9:11:86311048-86311069:+] 0.5012 144 7 -9.23 -0.2111 MIMAT0003497 mmu-miR-707 76892 Rnft1 gcauccguucgccGUACUGAc ||||||| cugaaaucuuuacCAUGACUa 2 9 941 961 [mm9:11:86310398-86310418:+] 0.5284 140 7 -8.92 -0.2957 MIMAT0003502 mmu-miR-712 76892 Rnft1 ccauggcgggCCCACUUCCUc || ||||||| gauauacaagGGAUGAAGGAg 2 12 1488 1508 [mm9:11:86310945-86310965:+] 0.5265 147 7 -22.64 -0.2174 MIMAT0003508 mmu-miR-501-5p 76892 Rnft1 aaaGUGGGUCCC----UGUUUC-CUAa ||||:|||| |:|||| ||| gacCACCUAGGGCUAUAUAAAGAGAUc 2 20 1852 1878 [mm9:11:86311309-86311335:+] 0.5009 130 0 -23.43 -0.3024 MIMAT0003508 mmu-miR-501-5p 76892 Rnft1 aaaGUGGGUCCCUGUUUCC-UAa :| |:| ||:||||| || uggUAACUAUUGAUAAAGGUAUa 2 20 46 68 [mm9:11:86309503-86309525:+] 0.5205 123 0 -13.35 -0.6441 MIMAT0004236 mmu-miR-741 76892 Rnft1 agAUGU-AUCUU-ACCGUAGAGAGu ||:| || || | : |||||| aaUAUACUAAAAUUUUUUUCUCUCa 2 22 3008 3032 [mm9:11:86312465-86312489:+] 0.5238 123 6 -11.43 -0.1428 MIMAT0004838 mmu-miR-742* 76892 Rnft1 acuaaucGUUGGUACACUCAu | |::|||||||| ugaaccaCUAUUAUGUGAGUa 2 15 2542 2562 [mm9:11:86311999-86312019:+] 0.4998 154 7 -16.74 -0.6247 MIMAT0004237 mmu-miR-742 76892 Rnft1 aaauGGGUCGUACCACCGAAAg :|:|| | | ||||||| ggguUCUAG-A-GAUGGCUUUa 2 19 1057 1076 [mm9:11:86310514-86310533:+] 0.5010 146 7 -13.75 -0.2188 MIMAT0004863 mmu-miR-220 76892 Rnft1 uucacaGACUGUGACACCACc |||:| :||||||| accuucCUGGCUUUGUGGUGa 2 16 1454 1474 [mm9:11:86310911-86310931:+] 0.5076 159 7 -20.53 -0.3421 MIMAT0004864 mmu-miR-297a* 76892 Rnft1 auACCCAUACACACAUACAUAu || || ||| ||||||| auUGUACAUCUGU-UAUGUAUg 2 21 2979 2999 [mm9:11:86312436-86312456:+] 0.5348 154 7 -8.84 -0.2773 MIMAT0004865 mmu-miR-297c 76892 Rnft1 uguACAUGUACGUGUGU-AUGUa || ||||| | ||| |||| uuuUGAACAUG-A-ACAUUACAu 2 20 2648 2668 [mm9:11:86312105-86312125:+] 0.5147 123 0 -14.18 -0.4623 MIMAT0004866 mmu-miR-297c* 76892 Rnft1 auACCCAUACACACAUACAUAu || || ||| ||||||| auUGUACAUCUGU-UAUGUAUg 2 21 2979 2999 [mm9:11:86312436-86312456:+] 0.5348 154 7 -8.84 -0.2773 MIMAT0004867 mmu-miR-327 76892 Rnft1 uaggAGUACGGGGAGUUCa |:| | ||||||| acuaUUAAG-GCCUCAAGa 2 16 10 27 [mm9:11:86309467-86309484:+] 0.4987 141 7 -11.97 -0.4055 MIMAT0004868 mmu-miR-343 76892 Rnft1 agacccgUGUACUUCCCUCu ||| ||||||| uuaaauaACA--AAGGGAGu 2 14 1637 1654 [mm9:11:86311094-86311111:+] 0.5130 142 7 -13.02 -0.4182 MIMAT0004868 mmu-miR-343 76892 Rnft1 agacccguguacUUCCCUCu ||||||| acaucgaggagaAAGGGAGa 2 9 808 827 [mm9:11:86310265-86310284:+] 0.4947 140 7 -16.58 -0.2220 MIMAT0004871 mmu-miR-465b-5p 76892 Rnft1 gucuagucguggUAAGAUUUAu :|||||||| uuuuaaaugaaaGUUCUAAAUg 2 11 445 466 [mm9:11:86309902-86309923:+] 0.5584 146 7 -8.72 -0.5075 MIMAT0004872 mmu-miR-465b-3p 76892 Rnft1 agAUGAAUCUUUCCGGGAC-UAg || |: ||: |||||| || uuUAAGUGCAAGAGCCCUGCAUu 2 21 139 161 [mm9:11:86309596-86309618:+] 0.4831 124 0 -14.61 -0.1781 MIMAT0004873 mmu-miR-465c-5p 76892 Rnft1 gucuagucgcggUAAGAUUUAu :|||||||| uuuuaaaugaaaGUUCUAAAUg 2 11 445 466 [mm9:11:86309902-86309923:+] 0.5584 146 7 -11.02 -0.5075 MIMAT0004874 mmu-miR-465c-3p 76892 Rnft1 agAUGAAUCUUUCCGGGAC-UAg || |: ||: |||||| || uuUAAGUGCAAGAGCCCUGCAUu 2 21 139 161 [mm9:11:86309596-86309618:+] 0.4831 124 0 -14.61 -0.1781 MIMAT0004875 mmu-miR-466b-5p 76892 Rnft1 guACAUGUACA--UGUGUGUGUAg ||||::||| |||||||||| auUGUAUGUGUCCACACACACAUa 2 21 1368 1391 [mm9:11:86310825-86310848:+] 0.4928 179 7 -23.05 -0.2379 MIMAT0004875 mmu-miR-466b-5p 76892 Rnft1 guacauGUACAUGUGU-GUGUAg || || ||| ||||| cucaacCAGAUAAACACCACAUc 2 17 1304 1326 [mm9:11:86310761-86310783:+] 0.4906 120 0 -15.45 -0.2845 MIMAT0004876 mmu-miR-466b-3p 76892 Rnft1 agAAUACACACGCACAUACAUAu ||:| | :|| ||||||| aaUUGUACAUCUGU-UAUGUAUg 2 22 2978 2999 [mm9:11:86312435-86312456:+] 0.5348 151 7 -9.51 -0.2797 MIMAT0005453 mmu-miR-466b-3-3p 76892 Rnft1 agAAUACACACGCACAUACAUAa ||:| | :|| ||||||| aaUUGUACAUCUGU-UAUGUAUg 2 22 2978 2999 [mm9:11:86312435-86312456:+] 0.5348 151 7 -7.38 -0.2797 MIMAT0004877 mmu-miR-466c-5p 76892 Rnft1 auACAUGUAC--GUGUGUGUGUAg ||||::|| ||||||||||| auUGUAUGUGUCCACACACACAUa 2 21 1368 1391 [mm9:11:86310825-86310848:+] 0.4928 179 7 -24.17 -0.2400 MIMAT0004878 mmu-miR-466c-3p 76892 Rnft1 agAAUACACACGCACAUACAUAu ||:| | :|| ||||||| aaUUGUACAUCUGU-UAUGUAUg 2 22 2978 2999 [mm9:11:86312435-86312456:+] 0.5348 151 7 -9.51 -0.2797 MIMAT0004879 mmu-miR-466e-5p 76892 Rnft1 auACAUGUACA--UGUGUGUGUAg ||||::||| |||||||||| auUGUAUGUGUCCACACACACAUa 2 21 1368 1391 [mm9:11:86310825-86310848:+] 0.4928 179 7 -23.05 -0.2379 MIMAT0004879 mmu-miR-466e-5p 76892 Rnft1 auacauGUACAUGUGU-GUGUAg || || ||| ||||| cucaacCAGAUAAACACCACAUc 2 17 1304 1326 [mm9:11:86310761-86310783:+] 0.4906 120 0 -14.00 -0.2845 MIMAT0004880 mmu-miR-466e-3p 76892 Rnft1 agAAUACACACGCACAUACAUAu ||:| | :|| ||||||| aaUUGUACAUCUGU-UAUGUAUg 2 22 2978 2999 [mm9:11:86312435-86312456:+] 0.5348 151 7 -9.51 -0.2797 MIMAT0004882 mmu-miR-466f-3p 76892 Rnft1 cacacAUACACACACACAUAc | | | | ||||||| uucacUCUAUAUUUGUGUAUa 2 17 1348 1368 [mm9:11:86310805-86310825:+] 0.4917 148 7 -5.86 -0.7121 MIMAT0004883 mmu-miR-466g 76892 Rnft1 acACACAC-GUA-CACAGACAUa || ||| || |||||||| caUGGGUGAAAUCAUGUCUGUAc 2 20 1237 1259 [mm9:11:86310694-86310716:+] 0.5252 153 7 -14.36 -0.1397 MIMAT0004884 mmu-miR-466h 76892 Rnft1 auguGUGUUCGUGUACGUGUGu | ::|||| |||||||| cuuuCUUGAGCA-AUGCACACa 2 19 2176 2196 [mm9:11:86311633-86311653:+] 0.5007 160 7 -19.93 -0.3286 MIMAT0004892 mmu-miR-568 76892 Rnft1 cacACAUAU-GUAAAUAUGUa ||| || | |||||||| aacUGU-UAUCUUUUAUACAa 2 18 2906 2925 [mm9:11:86312363-86312382:+] 0.5357 154 7 -7.51 -0.9319 MIMAT0004892 mmu-miR-568 76892 Rnft1 cacaCAUAUGUAAAUAUGUa | :| :| ||||||| cauaGAGUCUA-UUAUACAc 2 17 1388 1406 [mm9:11:86310845-86310863:+] 0.4928 142 7 -5.21 -0.2637 MIMAT0004930 mmu-miR-466d-5p 76892 Rnft1 guACAUGUACAUGCGUGUGUGu ||||::||| | ||||||| auUGUAUGUGUCCACACACACa 2 21 1368 1389 [mm9:11:86310825-86310846:+] 0.4928 176 7 -22.60 -0.1903 MIMAT0004930 mmu-miR-466d-5p 76892 Rnft1 guaCAUGU-ACAUGCGUGUGUGu || :| | ||| ||||||| agaGUCUAUUAUACACACACACa 2 20 1391 1413 [mm9:11:86310848-86310870:+] 0.4928 158 7 -17.49 -0.5095 MIMAT0004931 mmu-miR-466d-3p 76892 Rnft1 gauACACACGCAC-AUACAUAu ||| : || ||||||| aauUGUACAUCUGUUAUGUAUg 2 19 2978 2999 [mm9:11:86312435-86312456:+] 0.5348 145 7 -9.70 -0.2989 MIMAT0004932 mmu-miR-878-5p 76892 Rnft1 acAGAACUGUAGGUUGAUCUAu |:|| |::| |||||||| uaUUUUUAUGUGAAACUAGAUu 2 21 2736 2757 [mm9:11:86312193-86312214:+] 0.5495 164 7 -11.39 -0.3856 MIMAT0004935 mmu-miR-872* 76892 Rnft1 ucCUCCGAUGACGUUAUCAAGu ||| | |: : ||||||| acGAGAC-AUGUUUAUAGUUCa 2 21 106 126 [mm9:11:86309563-86309583:+] 0.4831 146 7 -13.10 -0.5577 MIMAT0004938 mmu-miR-875-3p 76892 Rnft1 guaucGGAGUCAUAAAAGUCc :||: || ||||||| ugauuUCUUUGU-UUUUCAGa 2 17 2501 2520 [mm9:11:86311958-86311977:+] 0.5003 150 7 -9.56 -0.6732 MIMAT0004938 mmu-miR-875-3p 76892 Rnft1 guaucGGA--GUCAUAAAAGUCc ||| ||| :||||||| uguuuCCUGACAG-GUUUUCAGa 2 17 319 340 [mm9:11:86309776-86309797:+] 0.5451 149 7 -14.51 -0.1861 MIMAT0004940 mmu-miR-511 76892 Rnft1 acucacGUC-UCGUUUUCCGUa ||| | : ||||||| uaacccCAGCAAUUAAAGGCAg 2 16 1739 1760 [mm9:11:86311196-86311217:+] 0.5001 146 7 -11.92 -0.1886 MIMAT0005293 mmu-miR-467e 76892 Rnft1 uguaUAUGUACGAGUGUGAAUa || | | :| ||||||| auucAUCCCUCUUAACACUUAu 2 19 1579 1600 [mm9:11:86311036-86311057:+] 0.5012 154 7 -11.31 -0.3845 MIMAT0005293 mmu-miR-467e 76892 Rnft1 uguauaUGUACGAGUGUGAAUa |: || | ||||||| acaagaAUCUG-UAACACUUAa 2 17 2817 2837 [mm9:11:86312274-86312294:+] 0.4838 146 7 -7.94 -0.8572 MIMAT0005293 mmu-miR-467e 76892 Rnft1 ugUAUAUGUA-CGAGUGUG-AAUa ||: |||| || |||| ||| acAUGAACAUAUCUAACACGUUAa 2 21 2948 2971 [mm9:11:86312405-86312428:+] 0.5348 127 0 -12.18 -0.9194 MIMAT0005830 mmu-miR-466l 76892 Rnft1 uuAUACACACGUACAUAA-AUAu ||| | ||::| |||| ||| ucUAUAUUUGUGUAUAUUGUAUg 2 21 1353 1375 [mm9:11:86310810-86310832:+] 0.4928 132 0 -10.45 -0.1933 MIMAT0005837 mmu-miR-1187 76892 Rnft1 aaUGUGUGUAUGUGUGUGUGUAu ::|::::| ||||||||||| uuGUAUGUGUCCACACACACAUa 2 22 1369 1391 [mm9:11:86310826-86310848:+] 0.4928 173 7 -25.92 -0.2443 MIMAT0005837 mmu-miR-1187 76892 Rnft1 aauGUGUGUAUGUGUGU-GUGUAu || || |:| ||| ||||| ccuCAACCAGAUAAACACCACAUc 2 21 1303 1326 [mm9:11:86310760-86310783:+] 0.4906 128 0 -16.03 -0.2797 MIMAT0005839 mmu-miR-669f 76892 Rnft1 uaUGCACACACACAUACAUAUAc || | | | | |:||||||| ucAC-UCUAUAUUUGUGUAUAUu 2 22 1349 1370 [mm9:11:86310806-86310827:+] 0.4917 155 7 -6.68 -0.1417 MIMAT0005845 mmu-miR-466k 76892 Rnft1 agUGU-ACAUGUACAUGUGUGUGu |:| ||||::||| ||||||| guAUAUUGUAUGUGUCCACACACa 2 22 1364 1387 [mm9:11:86310821-86310844:+] 0.4928 176 7 -25.02 -0.2433 MIMAT0005845 mmu-miR-466k 76892 Rnft1 agUGUA---CAUGU-ACAUGUGUGUGu |||| || :| | ||||||||| acACAUAGAGUCUAUUAUACACACACa 2 22 1385 1411 [mm9:11:86310842-86310868:+] 0.4928 159 7 -22.31 -0.6877 MIMAT0005846 mmu-miR-467f 76892 Rnft1 acauccACACACACACAUAUa | | | |||||||| ucacucUAUAUUUGUGUAUAu 2 16 1349 1369 [mm9:11:86310806-86310826:+] 0.4917 151 7 -9.27 -0.3802 MIMAT0005846 mmu-miR-467f 76892 Rnft1 acauccACAC-ACACACAU-AUa |||| | |||||| || cugucuUGUGUUUUGUGUAGUAc 2 16 628 650 [mm9:11:86310085-86310107:+] 0.5647 122 0 -11.36 -0.2508 MIMAT0005847 mmu-miR-1190 76892 Rnft1 cugucucCCCUUGGAGUCGACu | ||| ||||||| uuucacuGUGAAAGUCAGCUGa 2 16 1531 1552 [mm9:11:86310988-86311009:+] 0.5273 151 7 -15.86 -0.4811 MIMAT0005848 mmu-miR-466j 76892 Rnft1 aaUGUGUGUACGUG-UACGUGUGu :| : | || :| |||||||| ugGCUUUCUUGAGCAAUGCACACa 2 22 2173 2196 [mm9:11:86311630-86311653:+] 0.5007 152 7 -17.50 -0.3259 MIMAT0005852 mmu-miR-1194 76892 Rnft1 uccuagAUCGUCAAUGAGUAAg | |::| |||||||| guaaggUUGUGG-UACUCAUUa 2 17 1908 1928 [mm9:11:86311365-86311385:+] 0.5144 150 7 -14.46 -0.5109 MIMAT0005854 mmu-miR-467g 76892 Rnft1 uaUAUACACACACAUACAUAu :|| | ||| ||||||| uuGUACAUCUGU-UAUGUAUg 2 20 2980 2999 [mm9:11:86312437-86312456:+] 0.5348 153 7 -8.81 -0.2749 MIMAT0005855 mmu-miR-467h 76892 Rnft1 uguauaUGUACGUGUGUGAAUa |: ||:| ||||||| acaagaAUCUGUA-ACACUUAa 2 17 2817 2837 [mm9:11:86312274-86312294:+] 0.4838 150 7 -9.61 -0.8300 MIMAT0005855 mmu-miR-467h 76892 Rnft1 uguaUAUGUACGUGUGUGAAUa || | | : ||||||| auucAUCCCUCUUAACACUUAu 2 19 1579 1600 [mm9:11:86311036-86311057:+] 0.5012 146 7 -9.39 -0.3845 MIMAT0007874 mmu-miR-1904 76892 Rnft1 ggAGGGAGGUCUCCUC-GUCUUg || ||| :|:| || ||||| uuUCACUCAGGGGAAGCCAGAAc 2 21 838 860 [mm9:11:86310295-86310317:+] 0.5018 132 0 -26.19 -0.1820 MIMAT0007876 mmu-miR-1907 76892 Rnft1 uggaggucuaggagACGACGAg ||||||| ccagcacugagaaaUGCUGCUa 2 9 2036 2057 [mm9:11:86311493-86311514:+] 0.5097 140 7 -16.24 -0.2004 MIMAT0009390 mmu-miR-1927 76892 Rnft1 agucAGGGAUUGUAG--GUCUCCAg | ||||: ||: ||||||| cugcUACCUAG-AUUGACAGAGGUa 2 20 1262 1285 [mm9:11:86310719-86310742:+] 0.5252 152 7 -20.56 -0.1457 MIMAT0009396 mmu-miR-1933-5p 76892 Rnft1 uuuGAUUCUGGCUUGUGGUACUGa ||:| |:| :|||||||| aauCUGAAAUC-UUUACCAUGACu 2 22 938 960 [mm9:11:86310395-86310417:+] 0.5284 155 7 -21.26 -0.4503 MIMAT0009398 mmu-miR-1934 76892 Rnft1 ucuccugcuucguccCCUGGUCu ||||||| ugugcugcaguuccaGGACCAGa 2 9 1090 1112 [mm9:11:86310547-86310569:+] 0.5010 140 7 -21.18 -0.3435 MIMAT0009402 mmu-miR-1938 76892 Rnft1 cuggcuuGAUGUUCAG-GGUGGc :||||| || ||||| acaaguuUUACAA-UCACCACCu 2 16 710 731 [mm9:11:86310167-86310188:+] 0.4855 121 0 -15.80 -0.2123 MIMAT0009406 mmu-miR-1941-3p 76892 Rnft1 uacccUCUA-UGACGAUUCUAc | || || ||||||| acauaAAAUGACCACUAAGAUu 2 17 2839 2860 [mm9:11:86312296-86312317:+] 0.5366 147 7 -7.58 -0.5848 MIMAT0009406 mmu-miR-1941-3p 76892 Rnft1 uaccCUC-UA-UGACGAUUC-UAc ||| || ||||||||| || uaauGAGAAUCACUGCUAAGUAUa 2 18 1423 1446 [mm9:11:86310880-86310903:+] 0.5055 131 0 -17.09 -0.3945 MIMAT0009407 mmu-miR-1942 76892 Rnft1 guuggucuacuucUGUAGACu ||||||| augaaaaaauuguACAUCUGu 2 9 2971 2991 [mm9:11:86312428-86312448:+] 0.5348 140 7 -10.59 -0.7484 MIMAT0009415 mmu-miR-1948 76892 Rnft1 gacaugcucacGAGACGGAUUu | :||||||| acacacacacaCCUUGCCUAAu 2 12 1405 1426 [mm9:11:86310862-86310883:+] 0.5055 143 7 -11.35 -0.2477 MIMAT0009417 mmu-miR-1950 76892 Rnft1 acUGGUAUAGGAAU-CUACGUCu :| ||: | | ||||||| gaGCAAUGCACACAUGAUGCAGa 2 21 2183 2205 [mm9:11:86311640-86311662:+] 0.5007 143 7 -14.69 -0.2946 MIMAT0009418 mmu-miR-669l 76892 Rnft1 ugUAUAUGUACGUGUGUGU-UGa | ||: ||||| ||||| || acACAUG-AUGCAGACACAUACa 2 21 2192 2213 [mm9:11:86311649-86311670:+] 0.5007 130 0 -18.38 -0.1818 MIMAT0009419 mmu-miR-669m 76892 Rnft1 uaUACAAACACACCUAC-AUAUa || || || ||||| |||| agAU-UUACUGAGGAUGAUAUAu 2 21 504 525 [mm9:11:86309961-86309982:+] 0.5849 126 0 -10.10 -0.6814 MIMAT0009419 mmu-miR-669m 76892 Rnft1 uaUAC-AAACACACC----UACA-UAUa :|| ||||||| | |||| ||| uuGUGUUUUGUGUAGUACCAUGUAAUAg 2 21 633 660 [mm9:11:86310090-86310117:+] 0.5647 122 0 -11.13 -0.3170 MIMAT0009422 mmu-miR-1951 76892 Rnft1 auCGGUGUGGUCAGAGGUG-AUg |: | ||:|| :||||| || auGUGAAACUAGAUUCCACAUAg 2 21 2743 2765 [mm9:11:86312200-86312222:+] 0.5495 128 0 -14.89 -0.5100 MIMAT0009431 mmu-miR-1958 76892 Rnft1 ugaaugacGAAGGUGAAAGGAu |||: ||||||| auggcgcaCUUUACCUUUCCUu 2 15 901 922 [mm9:11:86310358-86310379:+] 0.5284 150 7 -12.89 -0.1043 MIMAT0009441 mmu-miR-1968 76892 Rnft1 ucaggUGGUA-GGAAUUGUCGACGu |:||| :|| |||||||| gugaaAUCAUGUCUGUACAGCUGCu 2 20 1242 1266 [mm9:11:86310699-86310723:+] 0.5252 162 7 -20.64 -0.2645 MIMAT0009445 mmu-miR-1274a 76892 Rnft1 accGCGGACUUGUCCCUGGACu | |||| : ||||||| auuCACCUG---GUGGACCUGu 2 20 589 607 [mm9:11:86310046-86310064:+] 0.5496 143 7 -22.50 -0.2834 MIMAT0011212 mmu-miR-2136 76892 Rnft1 guGUAGAGUC-AGUUGUGG-GUc || | ||| | |||||| || cuCAAC-CAGAUAAACACCACAu 2 20 1304 1325 [mm9:11:86310761-86310782:+] 0.4906 120 0 -13.53 -0.2922 MIMAT0011222 mmu-miR-2146 76892 Rnft1 guguaccuuggGAAGAGGUg :||||||| acuuaucacagUUUCUCCAg 2 10 1595 1614 [mm9:11:86311052-86311071:+] 0.5136 141 7 -13.73 -0.1684 MIMAT0011287 mmu-miR-2183 76892 Rnft1 uccuccagUCCCCAAGUu ||||||||| cauuuuaaAGGGGUUCAg 2 11 297 314 [mm9:11:86309754-86309771:+] 0.5451 150 7 -18.05 -0.1352 MIMAT0000124 mmu-miR-15b 76892 Rnft1 acauuUGGUACUACACGACGAu ||:: || ||||||| ccagcACUGAGAAAUGCUGCUa 2 18 2036 2057 [mm9:11:86311493-86311514:+] 0.5097 153 7 -16.08 -0.2004 MIMAT0000125 mmu-miR-23b 76892 Rnft1 ccauuaggGACCGUUACACUa :||| ||||||| guguuaaaUUGGAAAUGUGAu 2 14 232 252 [mm9:11:86309689-86309709:+] 0.5451 153 7 -16.17 -0.5193 MIMAT0000126 mmu-miR-27b 76892 Rnft1 cgUCUUGAAUCGGUGACACUu | ||:|| |||||||| uuAAAAUUU---CACUGUGAa 2 20 1525 1542 [mm9:11:86310982-86310999:+] 0.5454 151 7 -15.11 -0.4050 MIMAT0004528 mmu-miR-125a-3p 76892 Rnft1 ccgaggguUCUUGG--AGUGGACa ||| :| ||||||| aaugauuuAGAUUCAUUCACCUGg 2 15 575 598 [mm9:11:86310032-86310055:+] 0.5496 145 7 -17.41 -0.2042 MIMAT0000140 mmu-miR-128 76892 Rnft1 uuucucuggccAAGUGACACu ||||||||| gugauuaaaauUUCACUGUGa 2 11 1521 1541 [mm9:11:86310978-86310998:+] 0.5454 150 7 -15.21 -0.8925 MIMAT0000151 mmu-miR-140 76892 Rnft1 gaugguAUCCCAUUUUGGUGAc || | | :||||||| gauaguUAUGAU-GAACCACUa 2 17 2531 2551 [mm9:11:86311988-86312008:+] 0.4998 146 7 -12.18 -0.3404 MIMAT0000153 mmu-miR-141 76892 Rnft1 gguagaaauggucUGUCACAAu :||||||| uugacaaauaauuGCAGUGUUa 2 10 216 237 [mm9:11:86309673-86309694:+] 0.5451 141 7 -11.26 -0.7075 MIMAT0000156 mmu-miR-144 76892 Rnft1 ucAUGUAGUAGAUAUGACAu ||:||: |: ||||||| gaUAUAUU-UUAAUACUGUa 2 19 519 537 [mm9:11:86309976-86309994:+] 0.5849 156 7 -12.17 -1.0958 MIMAT0000158 mmu-miR-146a 76892 Rnft1 uuggguaccUUAAGUC-AAGAGu |:||||| ||||| cauguuuauAGUUCAGUUUCUCa 2 14 112 134 [mm9:11:86309569-86309591:+] 0.4831 125 0 -17.33 -0.3571 MIMAT0000165 mmu-miR-155 76892 Rnft1 uggggAUAGUGUUAAUCG-UAAUu || || || |||| |||| aauaaUACCA-AAAUAGCAAUUAg 2 19 261 283 [mm9:11:86309718-86309740:+] 0.5451 124 0 -11.49 -0.8351 MIMAT0000210 mmu-miR-181a 76892 Rnft1 ugaGUGGCUGUCGC--AACUUACAa || :|| ||:| |||||||| uaaCAAUGAAAGUGAUUUGAAUGUg 2 21 668 692 [mm9:11:86310125-86310149:+] 0.5197 163 7 -16.80 -0.1232 MIMAT0000220 mmu-miR-190 76892 Rnft1 uggAUUAUAUAGUUUGUAUAGu |::|| ::|||||||| auaUGGUAACAUGAACAUAUCu 2 20 2940 2961 [mm9:11:86312397-86312418:+] 0.5348 155 7 -10.15 -0.5941 MIMAT0000225 mmu-miR-195 76892 Rnft1 cgguuauaaagacACGACGAu ||||||| cagcacugagaaaUGCUGCUa 2 9 2037 2057 [mm9:11:86311494-86311514:+] 0.5097 140 7 -14.31 -0.2023 MIMAT0000236 mmu-miR-203 76892 Rnft1 gaUCACCAGGAUUUGUAA-AGUg :|| || || |||| ||| aaGGUUGUGGUACUCAUUAUCAg 2 21 1910 1932 [mm9:11:86311367-86311389:+] 0.5144 120 0 -10.69 -0.1755 MIMAT0000237 mmu-miR-204 76892 Rnft1 uccgUAUCCUACUGUUUCCCUu || || ||||||||| uaugAUUAAAUAACAAAGGGAg 2 19 1632 1653 [mm9:11:86311089-86311110:+] 0.5130 158 7 -15.36 -0.2229 MIMAT0000237 mmu-miR-204 76892 Rnft1 uccGUAUCCUA--CUGUUUCCCUu | || || |: ||||||| ucaCUUAAAAUUAGGAAAAGGGAa 2 20 1695 1718 [mm9:11:86311152-86311175:+] 0.4884 146 7 -15.10 -0.5052 MIMAT0000238 mmu-miR-205 76892 Rnft1 gucugaggccaCCUUACUUCCu ||:||||||| uagauauacaaGGGAUGAAGGa 2 12 1486 1507 [mm9:11:86310943-86310964:+] 0.5265 151 7 -21.17 -0.2145 MIMAT0000519 mmu-miR-200a 76892 Rnft1 uguagcaauggucUGUCACAAu :||||||| uugacaaauaauuGCAGUGUUa 2 10 216 237 [mm9:11:86309673-86309694:+] 0.5451 141 7 -11.26 -0.7075 MIMAT0000526 mmu-miR-15a 76892 Rnft1 guGUU-UGGUAAUACACGACGAu ||: ||:: | ||||||| ccCAGCACUGAGAAAUGCUGCUa 2 21 2035 2057 [mm9:11:86311492-86311514:+] 0.5097 147 7 -14.39 -0.2023 MIMAT0000527 mmu-miR-16 76892 Rnft1 gcGGUUAUAA--AUGCACGACGAu |||: | | | ||||||| ucCCAGCACUGAGAAAUGCUGCUa 2 21 2034 2057 [mm9:11:86311491-86311514:+] 0.5097 143 7 -15.17 -0.2023 MIMAT0000532 mmu-miR-23a 76892 Rnft1 ccUUUAGGGACCGUUACACUa |||| ||| ||||||| uuAAAU---UGGAAAUGUGAu 2 20 235 252 [mm9:11:86309692-86309709:+] 0.5451 155 7 -14.98 -0.5193 MIMAT0000533 mmu-miR-26a 76892 Rnft1 ucggAUAGGACCUAAU-GAACUu || | || | || ||||| guagUACCAUGUAAUAGCUUGAa 2 19 644 666 [mm9:11:86310101-86310123:+] 0.5687 122 0 -10.03 -0.8735 MIMAT0000534 mmu-miR-26b 76892 Rnft1 uggAUAGGACUUAAU-GAACUu || | || | || ||||| uagUACCAUGUAAUAGCUUGAa 2 19 645 666 [mm9:11:86310102-86310123:+] 0.5687 122 0 -12.27 -0.8735 MIMAT0000537 mmu-miR-27a 76892 Rnft1 cgccUUGAAUCGGUGACACUu || || :|||||||| auuaAAAUU--UCACUGUGAa 2 18 1524 1542 [mm9:11:86310981-86310999:+] 0.5454 150 7 -15.11 -0.4050 MIMAT0000548 mmu-miR-322 76892 Rnft1 agGUUUUG-UACUUAACGACGAc ||: || : ||| ||||||| ccCAGCACUGAGAAAUGCUGCUa 2 21 2035 2057 [mm9:11:86311492-86311514:+] 0.5097 159 7 -19.70 -0.2023 MIMAT0000582 mmu-miR-338-3p 76892 Rnft1 guuGUUUUA---GUGAC-UACGACCu ||:|:| ::||| ||||||| gacCAGAGUUUAUGCUGAAUGCUGGg 2 20 1106 1131 [mm9:11:86310563-86310588:+] 0.5010 153 7 -21.78 -0.1026 MIMAT0000661 mmu-miR-214 76892 Rnft1 ugacggacaGACAC-GGA-CGACa ||||| ||| |||| uagugcgcaCUGUGUCCUGGCUGa 2 14 779 802 [mm9:11:86310236-86310259:+] 0.5002 120 0 -19.83 -0.1463 MIMAT0000662 mmu-miR-216a 76892 Rnft1 agUGUCAACGGUCGAC-UCUAAu ||| || |:| || ||||| ucACAUUUUCUAAGUGAAGAUUu 2 21 487 509 [mm9:11:86309944-86309966:+] 0.5748 128 0 -12.24 -0.3880 MIMAT0000668 mmu-miR-211 76892 Rnft1 uccguuuccUACUGUUUCCCUu || ||||||||| uaugauuaaAUAACAAAGGGAg 2 14 1632 1653 [mm9:11:86311089-86311110:+] 0.5130 157 7 -15.36 -0.2209 MIMAT0000668 mmu-miR-211 76892 Rnft1 uccgUUUCCUACUGUUUCCCUu ||| | || ||||||| cuuaAAAUUAGGA-AAAGGGAa 2 19 1698 1718 [mm9:11:86311155-86311175:+] 0.4884 152 7 -14.39 -0.4821 MIMAT0000673 mmu-miR-181b 76892 Rnft1 uggGUGGCUGUCGUU--ACUUACAa || :|| ||::| ||||||| uaaCAAUGAAAGUGAUUUGAAUGUg 2 21 668 692 [mm9:11:86310125-86310149:+] 0.5197 159 7 -12.67 -0.1232 MIMAT0000674 mmu-miR-181c 76892 Rnft1 ugaGUGGCUGUC-C--AACUUACAa || :|| || | |||||||| uaaCAAUGAAAGUGAUUUGAAUGUg 2 20 668 692 [mm9:11:86310125-86310149:+] 0.5197 153 7 -12.40 -0.1232 MIMAT0000741 mmu-miR-377 76892 Rnft1 uguuuucaACGGAAACA-CACUa || |||||| |||| caccuuccUGGCUUUGUGGUGAa 2 15 1453 1475 [mm9:11:86310910-86310932:+] 0.5076 126 0 -12.95 -0.2581 MIMAT0001091 mmu-miR-410 76892 Rnft1 uguccgguagACACAAUAUAa | |||||||| accacuaagaUUUGUUAUAUa 2 12 2849 2869 [mm9:11:86312306-86312326:+] 0.5366 147 7 -8.71 -0.9791 MIMAT0001091 mmu-miR-410 76892 Rnft1 uguccGGUAGACACA-AUAUAa |:|| | ||| ||||| ucacuCUAUAUUUGUGUAUAUu 2 17 1349 1370 [mm9:11:86310806-86310827:+] 0.4917 124 0 -13.36 -0.1534 MIMAT0001533 mmu-miR-448 76892 Rnft1 uacccuGUAGGAUGUAUACGUu | | || ||||||| auucacCUUAAUAAAUAUGCAa 2 17 178 199 [mm9:11:86309635-86309656:+] 0.5451 148 7 -12.64 -1.1125 MIMAT0003169 mmu-miR-539 76892 Rnft1 ugUGUGGUUCCUAUUAAAGAGg | ||::| | ||||||| auAAACUGA--AACAUUUCUCu 2 21 1935 1954 [mm9:11:86311392-86311411:+] 0.5144 145 7 -7.84 -0.1677 MIMAT0003453 mmu-miR-497 76892 Rnft1 auguuUGGUGUCAC---ACGACGAc | ||| | | ||||||| gucccAGCACUGAGAAAUGCUGCUa 2 18 2033 2057 [mm9:11:86311490-86311514:+] 0.5097 144 7 -13.50 -0.2042 MIMAT0003456 mmu-miR-495 76892 Rnft1 uucUUCAC--GUGGUAC-AAACAAa || || |||:| | |||||| auaAAAUGACCACUAAGAUUUGUUa 2 20 2841 2865 [mm9:11:86312298-86312322:+] 0.5366 126 6 -8.44 -0.8147 MIMAT0003475 mmu-miR-146b 76892 Rnft1 ucGGAUACCUUAAGUC-AAGAGu ::||| |:||||| ||||| ugUUUAU--AGUUCAGUUUCUCa 2 21 114 134 [mm9:11:86309571-86309591:+] 0.4831 129 0 -18.91 -0.3571 MIMAT0004324 mmu-miR-181d 76892 Rnft1 uggGUGGCUGUUGUU--ACUUACAa || :|| |:::| ||||||| uaaCAAUGAAAGUGAUUUGAAUGUg 2 21 668 692 [mm9:11:86310125-86310149:+] 0.5197 155 7 -11.54 -0.1232 MIMAT0004852 mmu-miR-190b 76892 Rnft1 uuggGUUAUAGUUUGUAUAGu :|| || :|||||||| auggUAACAU-GAACAUAUCu 2 18 2942 2961 [mm9:11:86312399-86312418:+] 0.5348 155 7 -9.07 -0.5868 MIMAT0004855 mmu-miR-876-3p 76892 Rnft1 acUUAAUGAAAC-AUUUGGUGAu :|| ::| || |:||||||| guGAUAGUUAUGAUGAACCACUa 2 21 2529 2551 [mm9:11:86311986-86312008:+] 0.4998 159 7 -16.06 -0.3376 MIMAT0004896 mmu-miR-590-3p 76892 Rnft1 ugAUCGAAUAUGU-AUUUUAAu |||: |||:| ||||||| uaUAGUAAAUAUACUAAAAUUu 2 20 3001 3022 [mm9:11:86312458-86312479:+] 0.5238 162 7 -9.20 -0.4491 MIMAT0004896 mmu-miR-590-3p 76892 Rnft1 ugaUCGAAUA-UGUAUUUUAAu || ||| || ||||||| acaAGGCUAUCACUUAAAAUUa 2 19 1686 1707 [mm9:11:86311143-86311164:+] 0.4884 157 7 -8.86 -0.2772 MIMAT0004896 mmu-miR-590-3p 76892 Rnft1 ugAUCGAAUAUGUAUUUUAAu |: :||:|: ||||||| agUGAUUUGUGAUUAAAAUUu 2 20 1513 1533 [mm9:11:86310970-86310990:+] 0.5454 155 7 -7.45 -0.3091

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G068843 Rnft1 Mus musculus 76892

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnft1 RAID00030658 mmu-miR-344d-3p miRNA MIMAT0014808 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00116259 mmu-miR-141-3p miRNA MIMAT0000153 Rnft1 mRNA 76892 Prediction 0.2202 Rnft1 RAID00118575 mmu-miR-128-3p miRNA MIMAT0000140 Rnft1 mRNA 76892 Prediction 0.2202 Rnft1 RAID00124286 mmu-miR-181a-5p miRNA MIMAT0000210 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00130143 mmu-miR-338-3p miRNA MIMAT0000582 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00157491 mmu-miR-7223-3p miRNA MIMAT0028415 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00198854 mmu-miR-146b-5p miRNA MIMAT0003475 Rnft1 mRNA 76892 CLIP-seq//Prediction 0.6308 Rnft1 RAID00222633 mmu-miR-7074-3p miRNA MIMAT0028055 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00252101 mmu-miR-7119-3p miRNA MIMAT0028136 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00310031 mmu-miR-763 miRNA MIMAT0003896 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00337057 mmu-miR-1251-5p miRNA MIMAT0014824 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00354261 mmu-miR-181c-5p miRNA MIMAT0000674 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00380124 mmu-miR-466f-3p miRNA MIMAT0004882 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00435552 mmu-miR-410-3p miRNA MIMAT0001091 Rnft1 mRNA 76892 Prediction 0.2381 Rnft1 RAID00463189 mmu-miR-3101-3p miRNA MIMAT0014922 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00572217 mmu-miR-468-5p miRNA MIMAT0022699 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00601722 mmu-miR-467f miRNA MIMAT0005846 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00673219 mmu-miR-15b-5p miRNA MIMAT0000124 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00701024 mmu-miR-27a-3p miRNA MIMAT0000537 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00716076 mmu-miR-1964-5p miRNA MIMAT0017349 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00725878 mmu-miR-7222-3p miRNA MIMAT0028413 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00751831 mmu-miR-146a-5p miRNA MIMAT0000158 Rnft1 mRNA 76892 CLIP-seq//Prediction 0.6308 Rnft1 RAID00801123 mmu-miR-27b-3p miRNA MIMAT0000126 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00819060 mmu-miR-7081-3p miRNA MIMAT0028069 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00859582 mmu-miR-3081-5p miRNA MIMAT0014870 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00861130 mmu-miR-290b-5p miRNA MIMAT0029900 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID00879009 mmu-miR-5114 miRNA MIMAT0020622 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01023546 mmu-miR-3061-3p miRNA MIMAT0014829 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01123530 mmu-miR-204-5p miRNA MIMAT0000237 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01133853 mmu-miR-340-5p miRNA MIMAT0004651 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01188671 mmu-miR-7670-5p miRNA MIMAT0029846 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01238889 mmu-miR-216a-5p miRNA MIMAT0000662 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01305661 mmu-miR-448-3p miRNA MIMAT0001533 Rnft1 mRNA 76892 Prediction 0.2381 Rnft1 RAID01309288 mmu-miR-125a-3p miRNA MIMAT0004528 Rnft1 mRNA 76892 CLIP-seq//Prediction 0.6308 Rnft1 RAID01336239 mmu-miR-1264-3p miRNA MIMAT0014803 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01344852 mmu-miR-144-3p miRNA MIMAT0000156 Rnft1 mRNA 76892 CLIP-seq//Prediction 0.6478 Rnft1 RAID01424602 mmu-miR-1950 miRNA MIMAT0009417 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01539739 mmu-miR-568 miRNA MIMAT0004892 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01583628 mmu-miR-7227-3p miRNA MIMAT0028423 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01702714 mmu-miR-15a-5p miRNA MIMAT0000526 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01786805 mmu-miR-181d-5p miRNA MIMAT0004324 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01863737 mmu-miR-409-3p miRNA MIMAT0001090 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01865369 mmu-miR-16-1-3p miRNA MIMAT0004625 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01870435 mmu-miR-200a-3p miRNA MIMAT0000519 Rnft1 mRNA 76892 Prediction 0.2202 Rnft1 RAID01901536 mmu-miR-495-3p miRNA MIMAT0003456 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01930585 mmu-miR-1198-3p miRNA MIMAT0017332 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01939532 mmu-miR-6925-3p miRNA MIMAT0027751 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01943280 mmu-miR-195a-5p miRNA MIMAT0000225 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01963756 mmu-miR-344e-3p miRNA MIMAT0014924 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID01968587 mmu-miR-203-3p miRNA MIMAT0000236 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02007505 mmu-miR-23b-3p miRNA MIMAT0000125 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02084886 mmu-let-7c-1-3p miRNA MIMAT0004622 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02105766 mmu-miR-26a-5p miRNA MIMAT0000533 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02116476 mmu-miR-7049-3p miRNA MIMAT0028003 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02156905 mmu-miR-140-5p miRNA MIMAT0000151 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02161090 mmu-miR-7094b-2-5p miRNA MIMAT0028096 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02240309 mmu-miR-497a-5p miRNA MIMAT0003453 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02259590 mmu-miR-369-3p miRNA MIMAT0003186 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02323699 mmu-miR-374c-5p miRNA MIMAT0014953 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02344325 mmu-miR-214-3p miRNA MIMAT0000661 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02565925 mmu-miR-6938-5p miRNA MIMAT0027776 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02618312 mmu-miR-875-3p miRNA MIMAT0004938 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02640266 mmu-miR-488-5p miRNA MIMAT0003449 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02699028 mmu-miR-181b-5p miRNA MIMAT0000673 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02741985 mmu-miR-3074-2-3p miRNA MIMAT0014946 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02865305 mmu-miR-1948-3p miRNA MIMAT0009415 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02874455 mmu-miR-802-5p miRNA MIMAT0004188 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02902571 mmu-miR-205-5p miRNA MIMAT0000238 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02940202 mmu-miR-7660-3p miRNA MIMAT0029827 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02940283 mmu-miR-539-5p miRNA MIMAT0003169 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID02981866 mmu-miR-6908-5p miRNA MIMAT0027716 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03061058 mmu-miR-155-5p miRNA MIMAT0000165 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03090598 mmu-miR-190a-5p miRNA MIMAT0000220 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03118788 mmu-miR-590-3p miRNA MIMAT0004896 Rnft1 mRNA 76892 Prediction 0.2202 Rnft1 RAID03145117 mmu-miR-23a-3p miRNA MIMAT0000532 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03154486 mmu-miR-219a-2-3p miRNA MIMAT0022841 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03217929 mmu-miR-216c-3p miRNA MIMAT0029889 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03310823 mmu-miR-3063-5p miRNA MIMAT0014832 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03449674 mmu-miR-876-3p miRNA MIMAT0004855 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03549064 mmu-miR-211-5p miRNA MIMAT0000668 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03579976 mmu-miR-6539 miRNA MIMAT0025584 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03592978 mmu-miR-190b-5p miRNA MIMAT0004852 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03676268 mmu-miR-873a-5p miRNA MIMAT0004936 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03814351 mmu-miR-322-5p miRNA MIMAT0000548 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03854158 mmu-miR-6900-5p miRNA MIMAT0027700 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03897860 mmu-miR-26b-5p miRNA MIMAT0000534 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03901328 mmu-miR-377-3p miRNA MIMAT0000741 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03952529 mmu-miR-7223-5p miRNA MIMAT0028414 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03973155 mmu-miR-6373 miRNA MIMAT0025117 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03973859 mmu-miR-147-5p miRNA MIMAT0017269 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID03983724 mmu-miR-547-5p miRNA MIMAT0017210 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID04012417 mmu-miR-335-3p miRNA MIMAT0004704 Rnft1 mRNA 76892 Prediction 0.1828 Rnft1 RAID04049979 mmu-miR-16-5p miRNA MIMAT0000527 Rnft1 mRNA 76892 Prediction 0.1828