DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 71956 Rnf135 cgACGUU-UGUAGGCUGACUUUc | ||: ::| : ||||||| cuUUCAGUGUAAUAAACUGAAAu 2 21 628 650 [mm9:11:80013223-80013245:+] 0.5337 143 7 -7.81 -0.9280 MIMAT0004526 mmu-miR-101a* 71956 Rnf135 cguagucGUGACACUA-UUGACu || ||| || ||||| ggccuuuCAGUGUAAUAAACUGa 2 16 625 647 [mm9:11:80013220-80013242:+] 0.5337 123 0 -12.95 -0.7447 MIMAT0004531 mmu-miR-135a* 71956 Rnf135 gcggugccgaGGUUAGGGAUAu ||| ||||||| ggacuucgaaCCAUUCCCUAUg 2 13 357 378 [mm9:11:80012952-80012973:+] 0.5306 152 7 -19.60 -0.2943 MIMAT0000152 mmu-miR-140* 71956 Rnf135 ggcACCAAG--A-UGGGACACCAu |||||: | | |||||||| uguUGGUUUAGUAAGCCUGUGGUc 2 19 393 416 [mm9:11:80012988-80013011:+] 0.5337 156 7 -20.79 -0.1218 MIMAT0000152 mmu-miR-140* 71956 Rnf135 ggcaccAAGAUGGGACACCau ||:||::|||||| uguucaUUUUAUUCUGUGGcc 3 16 608 628 [mm9:11:80013203-80013223:+] 0.5368 143 0 -18.67 -0.1303 MIMAT0004540 mmu-miR-186* 71956 Rnf135 ggGUUUUUUAAGUGGAAUCCCg :::|:||||| ||||||| acUGGAGAAUUCCACUUAGGGa 2 21 52 73 [mm9:11:80012647-80012668:+] 0.4833 168 7 -23.80 -0.6979 MIMAT0000249 mmu-miR-30e* 71956 Rnf135 cgACAUUUGUAGGCUGACUUUc ||||| | ||||||| agUGUAAUAA----ACUGAAAu 2 21 633 650 [mm9:11:80013228-80013245:+] 0.5337 143 7 -8.55 -0.9025 MIMAT0004573 mmu-miR-293* 71956 Rnf135 guUUUAC--AGUG-UG-UCAAACUCa |::|| |||| :| |||||||| guAGGUGGAUCACUGCAAGUUUGAGg 2 21 124 149 [mm9:11:80012719-80012744:+] 0.4814 157 7 -18.73 -0.2190 MIMAT0000376 mmu-miR-298 71956 Rnf135 cccuucuuGUCGGGAGGAGACGg || | : ||||||| uauguccuCA-CAUACCUCUGCu 2 16 513 534 [mm9:11:80013108-80013129:+] 0.5368 141 7 -19.57 -0.5453 MIMAT0004583 mmu-miR-130b* 71956 Rnf135 ucAUCACGU--UGUCCCUUUCUCa | | ||| ||| ||||||| ccUUGGGCAUUUCAGAGAAAGAGc 2 21 272 295 [mm9:11:80012867-80012890:+] 0.5306 155 7 -18.18 -0.3408 MIMAT0004624 mmu-miR-15a* 71956 Rnf135 acuccgucgugucAUACCGGAc |||||||| ucgaaccauucccUAUGGCCUc 2 10 362 383 [mm9:11:80012957-80012978:+] 0.5306 145 7 -12.81 -0.3206 MIMAT0004635 mmu-miR-92a* 71956 Rnf135 cauUACGGUGGUU-AGGGGUGGa ||| ||::| ||||||| uacAUG--ACUGACCCCCCACCc 2 20 430 450 [mm9:11:80013025-80013045:+] 0.5368 147 7 -19.26 -0.1024 MIMAT0000558 mmu-miR-325* 71956 Rnf135 ugUGAAUGACUCGU--GGAU-GAUCc :|| : ||| || :||| |||| uaGCUGGGUGAACAUCUCUAGCUAGc 2 22 477 502 [mm9:11:80013072-80013097:+] 0.5368 120 0 -15.60 -0.5829 MIMAT0004640 mmu-miR-325 71956 Rnf135 aaCUAUCCUCCACGAGUUAUUu | ||| | || ||||||| agGCUAGCA--UGGUCAAUAAa 2 21 147 166 [mm9:11:80012742-80012761:+] 0.4814 153 7 -11.63 -0.4629 MIMAT0004643 mmu-miR-331-5p 71956 Rnf135 ccuagggacccugGUAUGGAUc |||||||| ggauauaguagugCAUACCUAu 2 10 78 99 [mm9:11:80012673-80012694:+] 0.4858 145 7 -13.47 -0.1940 MIMAT0005444 mmu-miR-218-2* 71956 Rnf135 gcgccacgaacuguCUUGGUAc ||||||| auaagaaggacuucGAACCAUu 2 9 350 371 [mm9:11:80012945-80012966:+] 0.5306 140 7 -12.11 -0.1910 MIMAT0004668 mmu-miR-138* 71956 Rnf135 ggGACC---ACAA-CACUUCA-UCGGc |||| |||| || ||| |||| auCUGGGACUGUUGGUUUAGUAAGCCu 2 21 384 410 [mm9:11:80012979-80013005:+] 0.5337 122 0 -20.32 -0.4695 MIMAT0003127 mmu-miR-484 71956 Rnf135 uaGCCCUCCCCUGACUCG-GACu | ||| |||| |||| ||| ugCUGGA-AGGACAGAGCGCUGu 2 21 531 552 [mm9:11:80013126-80013147:+] 0.5368 126 0 -20.85 -0.2036 MIMAT0005460 mmu-miR-1224 71956 Rnf135 gaggugGAGGGGU-CAGGAGUg || : :| ||||||| cauaugCUAUAUAUGUCCUCAc 2 16 502 523 [mm9:11:80013097-80013118:+] 0.5368 142 7 -17.62 -0.6062 MIMAT0003733 mmu-miR-665 71956 Rnf135 ucccuggagUCG-GAGGACCa ||: ||||||| guaagagggAGUGCUCCUGGa 2 12 563 583 [mm9:11:80013158-80013178:+] 0.5368 142 7 -21.99 -0.2586 MIMAT0003497 mmu-miR-707 71956 Rnf135 gcaUCCGU-UCGCCGUACUGAc || || | | ||||||| acaAGUCACACCUACAUGACUg 2 19 418 439 [mm9:11:80013013-80013034:+] 0.5368 149 7 -15.76 -0.1973 MIMAT0003497 mmu-miR-707 71956 Rnf135 gcauccguucgccGUACUGAc ||||||| aauaaacugaaauCAUGACUu 2 9 638 658 [mm9:11:80013233-80013253:+] 0.5337 140 7 -9.48 -0.8590 MIMAT0004856 mmu-miR-105 71956 Rnf135 ugGUGUUCGUA--GA-CUCGUGAACc ||:| :|| || |||||||| ugCAUACCUAUAACUCCAGCACUUGg 2 22 89 114 [mm9:11:80012684-80012709:+] 0.4836 151 7 -20.89 -0.1642 MIMAT0004890 mmu-miR-509-5p 71956 Rnf135 uacuaacgguguaAGACCUCAu |||||||| gagaaagagcuggUCUGGAGUg 2 10 286 307 [mm9:11:80012881-80012902:+] 0.5306 145 7 -17.27 -0.1458 MIMAT0004935 mmu-miR-872* 71956 Rnf135 uccuCCGAUGACGU-UAUCAAGu ||: | | | ||||||| gcauGGUCAAUAAAGAUAGUUCa 2 19 153 175 [mm9:11:80012748-80012770:+] 0.4907 145 7 -11.98 -0.5387 MIMAT0005836 mmu-miR-1186 71956 Rnf135 guACGGAAAUUAAGGUCGUGAg | ||| ||| ||||||||| caUACCUAUAACUCCAGCACUu 2 21 91 112 [mm9:11:80012686-80012707:+] 0.4858 176 7 -23.93 -0.1207 MIMAT0005843 mmu-miR-1188 71956 Rnf135 aggACCGGGU-UGGAGUGUGGu |||:| | | ||||||| cugUGGUCAACAAGUCACACCu 2 19 409 430 [mm9:11:80013004-80013025:+] 0.5368 153 7 -22.56 -0.2401 MIMAT0005851 mmu-miR-1193 71956 Rnf135 cuaucauuuugccCACUGGAu ||||||| gugucuccucacaGUGACCUc 2 9 305 325 [mm9:11:80012900-80012920:+] 0.5306 140 7 -12.49 -0.2824 MIMAT0007866 mmu-miR-1905 71956 Rnf135 gaUGGCG-CACCACCCUGACCAc | ||| || | ||||||| agAGCGCUGUCUUAUGACUGGUa 2 21 543 565 [mm9:11:80013138-80013160:+] 0.5368 151 7 -16.92 -0.7573 MIMAT0007867 mmu-miR-1895 71956 Rnf135 aggaggagcaGGA-GGAGCCCCc |:| |||||||| ---------gCUUCCCUCGGGGu 2 13 1 14 [mm9:11:80012596-80012609:+] 0.5516 147 7 -21.16 -0.2368 MIMAT0007873 mmu-miR-1896 71956 Rnf135 gaGGAGUGGGUGGUAGUCUCUc |||:: ||:: ||||||| aaCCUUGGGCAUU-UCAGAGAa 2 21 270 290 [mm9:11:80012865-80012885:+] 0.5306 154 7 -17.97 -1.0637 MIMAT0007878 mmu-miR-1894-3p 71956 Rnf135 gaggGAAG-UGGGAGAGGGA-ACg |||| | || :||||| || aggaCUUCGAACCAUUCCCUAUGg 2 19 356 379 [mm9:11:80012951-80012974:+] 0.5306 125 0 -19.73 -0.3480 MIMAT0007880 mmu-miR-1901 71956 Rnf135 ccuGGGGGCCCUCAUG-CUCGCc |: |:|| || || ||||| ccuCUGCUGGAAGGACAGAGCGc 2 20 527 549 [mm9:11:80013122-80013144:+] 0.5368 127 0 -20.85 -0.3476 MIMAT0009415 mmu-miR-1948 71956 Rnf135 gacaugCUCA-CGAGACGGAUUu || | || |||||||| gccucaGAAUAGC-CUGCCUAAu 2 17 330 351 [mm9:11:80012925-80012946:+] 0.5306 149 7 -14.78 -0.2196 MIMAT0009426 mmu-miR-1955 71956 Rnf135 uuuucgacgucacGUAGGACCCUGa ||| ||||||| uucccuauggccuCAU-CUGGGACu 2 13 370 393 [mm9:11:80012965-80012988:+] 0.5306 146 7 -19.82 -0.4000 MIMAT0009428 mmu-miR-1956 71956 Rnf135 aggcgaCUGAGUCGGGACCUGa || | : :||||||| aagaggGAGU-GCUCCUGGACc 2 17 565 585 [mm9:11:80013160-80013180:+] 0.5368 142 7 -18.89 -0.1581 MIMAT0011221 mmu-miR-2145 71956 Rnf135 uugguccGGGCUGGGACGa |: |||||||| agugcucCUGGACCCUGCu 2 13 572 590 [mm9:11:80013167-80013185:+] 0.5368 148 7 -22.20 -0.1391 MIMAT0000134 mmu-miR-124 71956 Rnf135 ccguaaguGGCGCACGGAAu :||:||||||| gacccugcUCGUGUGCCUUu 2 13 582 601 [mm9:11:80013177-80013196:+] 0.5368 152 7 -19.52 -0.7022 MIMAT0000134 mmu-miR-124 71956 Rnf135 ccGU-AAGUGGCGCA-CGGAAu || ||:|:: :|| ||||| uuCAUUUUAUUCUGUGGCCUUu 2 19 610 631 [mm9:11:80013205-80013226:+] 0.5368 121 0 -17.91 -0.6907 MIMAT0000144 mmu-miR-132 71956 Rnf135 gcuGGUACCGACAUCUGACAAu :||| ||| :||||||| gccUCAU--CUG-GGACUGUUg 2 20 379 397 [mm9:11:80012974-80012992:+] 0.5337 150 7 -18.57 -0.1549 MIMAT0000160 mmu-miR-150 71956 Rnf135 gugaccauguucccAACCCUCu ||||||| uaaaguuauucuuuUUGGGAGu 2 9 213 234 [mm9:11:80012808-80012829:+] 0.5306 140 7 -12.48 -0.6411 MIMAT0000215 mmu-miR-186 71956 Rnf135 ucGGGUUUUCCUCU---UAAGAAAc ||||| | | ||||||| ugCCCAAUUUUAAAGUUAUUCUUUu 2 21 203 227 [mm9:11:80012798-80012822:+] 0.5153 143 7 -14.28 -0.9524 MIMAT0000235 mmu-miR-202-3p 71956 Rnf135 agaaggGUACGCGA---UAUGGAGa :|||: || ||||||| gcuauaUAUGUCCUCACAUACCUCu 2 17 507 531 [mm9:11:80013102-80013126:+] 0.5368 147 7 -17.72 -0.1759 MIMAT0000236 mmu-miR-203 71956 Rnf135 gaucaccaGGAUUUGUAAAGUg |:|:::||||||| uuuuaaacCUUGGGCAUUUCAg 2 15 265 286 [mm9:11:80012860-80012881:+] 0.5306 154 7 -14.36 -0.2772 MIMAT0000366 mmu-miR-290-5p 71956 Rnf135 uuucacgGGGGUAUCAAACUCa |: || |||||||| uggaucaCUGCA-AGUUUGAGg 2 16 129 149 [mm9:11:80012724-80012744:+] 0.4814 149 7 -13.91 -0.2190 MIMAT0000369 mmu-miR-292-5p 71956 Rnf135 guuuucucGGGGGUCAAACUCa |: | |||||||| guggaucaCUGCAAGUUUGAGg 2 15 128 149 [mm9:11:80012723-80012744:+] 0.4814 150 7 -13.89 -0.2190 MIMAT0000381 mmu-miR-34c 71956 Rnf135 cguuagucgauugaugUGACGGa |||||| uggacuauaugauaugACUGCCc 2 8 185 207 [mm9:11:80012780-80012802:+] 0.5153 120 6 -12.13 -0.1083 MIMAT0000382 mmu-miR-34b-5p 71956 Rnf135 ugUUAGUCGAUUAAUGUGACGGa :| :| |:|| |||||| ugGACUAUAUGAUAUGACUGCCc 2 22 185 207 [mm9:11:80012780-80012802:+] 0.5153 121 6 -10.95 -0.1083 MIMAT0000383 mmu-let-7d 71956 Rnf135 uugAUACGUUGGA-UG-AUGGAGa ||| :: ||| || |||||| cuaUAUAUGUCCUCACAUACCUCu 2 20 508 531 [mm9:11:80013103-80013126:+] 0.5368 126 6 -18.35 -0.1463 MIMAT0000521 mmu-let-7a 71956 Rnf135 uugAUAUGUUGGA-UG-AUGGAGu ||||:: ||| || |||||| cuaUAUAUGUCCUCACAUACCUCu 2 20 508 531 [mm9:11:80013103-80013126:+] 0.5368 134 6 -19.81 -0.1463 MIMAT0000522 mmu-let-7b 71956 Rnf135 uugGUGUGUUGGA-UG-AUGGAGu :|:|:: ||| || |||||| cuaUAUAUGUCCUCACAUACCUCu 2 20 508 531 [mm9:11:80013103-80013126:+] 0.5368 126 6 -19.09 -0.1449 MIMAT0000523 mmu-let-7c 71956 Rnf135 uugGUAUGUUGGA-UG-AUGGAGu :|||:: ||| || |||||| cuaUAUAUGUCCUCACAUACCUCu 2 20 508 531 [mm9:11:80013103-80013126:+] 0.5368 130 6 -19.12 -0.1463 MIMAT0000525 mmu-let-7f 71956 Rnf135 uuGAUAUGU-UA-GA-UG-AUGGAGu |||||:| :| || || |||||| ugCUAUAUAUGUCCUCACAUACCUCu 2 21 506 531 [mm9:11:80013101-80013126:+] 0.5368 129 6 -17.87 -0.1463 MIMAT0000542 mmu-miR-34a 71956 Rnf135 ugUUGGUCGAUUCU-GUGACGGu :||:| |:| | |||||| ugGACUAUAUGAUAUGACUGCCc 2 21 185 207 [mm9:11:80012780-80012802:+] 0.5153 123 6 -12.40 -0.1094 MIMAT0000545 mmu-miR-98 71956 Rnf135 uuguUAUGU-UGAAUG-AUGGAGu |||:: || || |||||| cuauAUAUGUCCUCACAUACCUCu 2 19 508 531 [mm9:11:80013103-80013126:+] 0.5368 121 6 -12.20 -0.1463 MIMAT0000659 mmu-miR-212 71956 Rnf135 acCGGCACU-GACCUCUGACAAu ||| | | |||| ||||||| ugGCC-UCAUCUGG-GACUGUUg 2 21 377 397 [mm9:11:80012972-80012992:+] 0.5337 155 7 -27.77 -0.1423 MIMAT0000711 mmu-miR-365 71956 Rnf135 uauucCUAAAAAU-----CCCCGUAAu | |||||| ||||||| uuuguGUUUUUUAAACCUUGGGCAUUu 2 18 257 283 [mm9:11:80012852-80012878:+] 0.5306 144 7 -10.25 -0.7691 MIMAT0001420 mmu-miR-433 71956 Rnf135 uguggcuccucgggUAGUACUa ||||||| uguaauaaacugaaAUCAUGAc 2 9 635 656 [mm9:11:80013230-80013251:+] 0.5337 140 7 -10.76 -0.6749 MIMAT0001542 mmu-miR-449a 71956 Rnf135 uggucGAU-UGUUAU-GUGACGGu ||| |::||| |||||| uuggaCUAUAUGAUAUGACUGCCc 2 18 184 207 [mm9:11:80012779-80012802:+] 0.5153 127 6 -14.13 -0.1094 MIMAT0003183 mmu-miR-376c 71956 Rnf135 ugCACUUUAAAGGAGAU-ACAa ||| : ||::|||| ||| ucGUGUGCCUUUUUCUACUGUu 2 20 590 611 [mm9:11:80013185-80013206:+] 0.5368 123 0 -15.95 -0.8224 MIMAT0003450 mmu-miR-488 71956 Rnf135 cugguucuuUGUCGGAAAGUu :::|||||||| uuuuauucuGUGGCCUUUCAg 2 13 614 634 [mm9:11:80013209-80013229:+] 0.5368 148 7 -14.54 -0.3634 MIMAT0003460 mmu-miR-449c 71956 Rnf135 ggucgaucguuacgUGACGGa |||||| gacuauaugauaugACUGCCc 2 8 187 207 [mm9:11:80012782-80012802:+] 0.5153 120 6 -13.02 -0.1094 MIMAT0005447 mmu-miR-449b 71956 Rnf135 cggucgAUUGUUGUGACGGa |:|:| |||||| acuauaUGAUAUGACUGCCc 2 15 188 207 [mm9:11:80012783-80012802:+] 0.5153 122 6 -14.99 -0.1083

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G039290 Rnf135 Mus musculus 71956

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf135 mmu-miR-15astar beg:365 end:383 pic:3' ACTCCGTCGTGTC--ATACCGGAC 5'& ||. |||||||| &5' --------CATTCCCTATGGCCT- 3' Rnf135 mmu-miR-707 beg:429 end:440 pic:3' GCATCCGTTCGCCGTACTGAC 5'& |||||||| &5' -------------CATGACTG 3' Rnf135 mmu-miR-488 beg:620 end:635 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& . ||||||||. &5' ---------GTGGCCTTTCAG 3' Rnf135 mmu-miR-665 beg:565 end:583 pic:3' TCCCTGGAGTCGGAGGACCA 5'& ||||| . ||||||| &5' AGGGAGTG----CTCCTGG- 3' Rnf135 mmu-miR-1895 beg:0 end:14 pic:3' AGGAGGAGCAGGA-GGAGCCCCC 5'& |.| |||||||| &5' ----------CTTCCCTCGGGG- 3' Rnf135 mmu-miR-509-5p beg:291 end:308 pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||.. ||||||||. &5' ------GCTGG--TCTGGAGTG 3' Rnf135 mmu-miR-130bstar beg:281 end:295 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& ||| ||||||| &5' ----------CAGAGAAAGAG- 3' Rnf135 mmu-miR-218-2star beg:355 end:371 pic:3' GCGCCACGAACTGT--CTTGGTAC 5'& ||| ||||||| &5' ----------GACTTCGAACCAT- 3' Rnf135 mcmv-miR-m108-1star beg:578 end:595 pic:3' GTAAAGCCCGCCAACGAGCACT 5'& || |||||||| &5' -------GGACCCTGCTCGTG- 3' Rnf135 mmu-miR-365 beg:273 end:282 pic:3' TATTCCTAAAAATCCCCGTAAT 5'& ||||||| &5' --------------GGGCATT- 3' Rnf135 mmu-miR-1224 beg:505 end:524 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& |.|. |||||||| &5' --CTATATAT---GTCCTCAC 3' Rnf135 mmu-miR-1193 beg:315 end:324 pic:3' CTATCATTTTGCCCACTGGAT 5'& ||||||| &5' -------------GTGACCT- 3' Rnf135 mmu-miR-124 beg:585 end:601 pic:3' CCGTAAGTG-GCGCACGGAAT 5'& .| ||.||||||| &5' -------GCTCGTGTGCCTT- 3' Rnf135 mmu-miR-293star beg:130 end:149 pic:3' GTTTTACAGTG-TG-TCAAACTCA 5'& |||| .| |||||||| &5' -------TCACTGCAAGTTTGAG- 3' Rnf135 mmu-miR-290-5p beg:133 end:149 pic:3' TTTCACGGGGGTATCAAACTCA 5'& |. || |||||||| &5' -------CTGCA-AGTTTGAG- 3' Rnf135 mcmv-miR-m01-1 beg:295 end:315 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& || .| || ||||||| &5' --GTCTGGAGTG--TCTCCTC- 3' Rnf135 mcmv-miR-m107-1-5p beg:302 end:324 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& ||| ||| || ||||||| &5' -GTGTCTCCTCAC-AGTGACC- 3' Rnf135 mcmv-miR-m21-1 beg:357 end:378 pic:3' GCCGAA-CTTGCACAGGGGATA 5'& | ||| |||| |.|||||| &5' -GACTTCGAACCA-TTCCCTAT 3' Rnf135 mcmv-miR-M23-2 beg:431 end:448 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||||.|| |||||| &5' -----TGACTGAC-CCCCCA- 3' Rnf135 mmu-miR-101astar beg:419 end:441 pic:3' CGTAGTCGTGACACTATTGACT 5'& .||| ||| ||.||||| &5' --GTCA-CACCTACATGACTGA 3' Rnf135 mmu-miR-105 beg:93 end:115 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& |.|.|| | || ||||||||| &5' -CTATAA-C-TCC-AGCACTTGG 3' Rnf135 mmu-miR-1186 beg:92 end:113 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||| ||| |||||||||. &5' ----CCTATAACTCCAGCACTT 3' Rnf135 mmu-miR-1191 beg:375 end:395 pic:3' ATCCCGATGTATCATTCTGAC 5'& ||| ||| |..||||| &5' ---GGCCTCATC-TGGGACTG 3' Rnf135 mmu-miR-1193 beg:620 end:630 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||.||| &5' -------------GTGGCCT- 3' Rnf135 mmu-miR-124star beg:471 end:492 pic:3' TAGTTCCAGG-CGA--CACTTGTGC 5'& || ||| |||||||. &5' ------GTATAGCTGGGTGAACAT- 3' Rnf135 mmu-miR-125a-5p beg:4 end:14 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& |||.||| &5' ----------------CTCGGGG- 3' Rnf135 mmu-miR-130a beg:591 end:616 pic:3' TACGGGAAAAT-TG-TAACGTGAC 5'& .||||.|||| || .|| ||.| &5' GTGCCTTTTTCTACTGTT-CATT- 3' Rnf135 mmu-miR-132 beg:376 end:397 pic:3' GCTGGTACCGACATCTGACAAT 5'& |.|| ||| .|||||||. &5' -GGCCTCATCTG-GGACTGTTG 3' Rnf135 mmu-miR-134 beg:405 end:428 pic:3' GGGGAGACCAGTTGGTCAGTGT 5'& ||| |||||||| ||||||| &5' --CCTGTGGTCAACAAGTCACA 3' Rnf135 mmu-miR-139-3p beg:292 end:313 pic:3' GAGGTTGTCCCGG----CGCAGAGGT 5'& |.| ||.| |.|||||| &5' ----AGCT-GGTCTGGAGTGTCTCC- 3' Rnf135 mmu-miR-140star beg:394 end:416 pic:3' GGCACCAAGA---TGGGACACCAT 5'& |||||. | |||||||| &5' ---TGGTTTAGTAAGCCTGTGGT- 3' Rnf135 mmu-miR-145 beg:524 end:538 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| .||||| &5' -------CCTCT----GCTGGA- 3' Rnf135 mmu-miR-150 beg:214 end:234 pic:3' GTGACCATGTTCCCAACCCTCT 5'& | ||. ||||||| &5' ----GTTATTCTTTTTGGGAG- 3' Rnf135 mmu-miR-151-3p beg:169 end:192 pic:3' GGAGTTCC--TCGGAGTCAGATC 5'& .|||||| |||.| .| ||| &5' -TTCAAGGCCAGCTT-GGACTA- 3' Rnf135 mmu-miR-15astar beg:7 end:29 pic:3' ACTCC-GTCGTGTCATACCGGAC 5'& |.|| .|| ||||| |||.| &5' -GGGGTTAGGACAGT--GGCTT- 3' Rnf135 mmu-miR-186star beg:53 end:73 pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& ..|.||||| ||||||| &5' ---GGAGAATTCCACTTAGGG- 3' Rnf135 mmu-miR-1896 beg:269 end:290 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& |||.. ||.. ||||||| &5' --CCTTGGGCATT-TCAGAGA- 3' Rnf135 mmu-miR-1905 beg:544 end:565 pic:3' GATGGCG-CACCACCCTGACCAC 5'& ||| || ||||||| &5' ----CGCTGTCTTATGACTGGT- 3' Rnf135 mmu-miR-1930 beg:104 end:126 pic:3' TGCGACGTCCATGATACCTCCA 5'& .| || ..|| || .||||||| &5' GCACT-TGGG-AC-GTGGAGGT 3' Rnf135 mmu-miR-1933-5p beg:640 end:658 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||.||| |.||||||| &5' --------ACTGAA-ATCATGACT 3' Rnf135 mmu-miR-1935 beg:513 end:535 pic:3' TCTCTAGGCG-GTC-GGAGACGGA 5'& .||| | || |||||||. &5' ----GTCCTCACATACCTCTGCT- 3' Rnf135 mmu-miR-1937c beg:375 end:392 pic:3' ACCCCC-GAGAAGGCCCTA 5'& || ||| ||.|||| &5' ----GGCCTCATCTGGGA- 3' Rnf135 mmu-miR-1948 beg:338 end:351 pic:3' GACATGCTCACGAGACGGATTT 5'& || |||||||| &5' ----------GC-CTGCCTAA- 3' Rnf135 mmu-miR-1956 beg:174 end:191 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& |.| ||| |.|||||| &5' ------GGC-CAG-CTTGGACT 3' Rnf135 mmu-miR-1971 beg:169 end:190 pic:3' AGAG-TCGGGTCGGAAATG 5'& .|| || |||||.| || &5' -TTCAAGGCCAGCTTGGAC 3' Rnf135 mmu-miR-205 beg:102 end:124 pic:3' GTC-TGAGGCCACCTTACTTCCT 5'& ||| |||. || .||.||| &5' CAGCACTTGGGAC--GTGGAGG- 3' Rnf135 mmu-miR-212 beg:376 end:397 pic:3' ACCGGCACTGACCTCTGACAAT 5'& |||| |||| |||||||. &5' -GGCCTCATCTGG-GACTGTTG 3' Rnf135 mmu-miR-2135 beg:342 end:364 pic:3' CAAAGCCGGGG------TTCTGGAGA 5'& |||. |.|||.|| &5' ------GCCTAATAAGAAGGACTTC- 3' Rnf135 mmu-miR-214 beg:515 end:536 pic:3' TGAC-GGACAGACAC-GGACGACA 5'& | ||| .|||||| &5' ---GTCCTCACATACCTCTGCTG- 3' Rnf135 mmu-miR-2145 beg:569 end:591 pic:3' TTGGTC-CGGG---CTGGGACGA 5'& || ||.| ||||||||| &5' ----AGTGCTCCTGGACCCTGCT 3' Rnf135 mmu-miR-22star beg:341 end:362 pic:3' ATTTCGAACGGTGA---CTTCTTGA 5'& |||| ||||.||| &5' -------TGCCTAATAAGAAGGACT 3' Rnf135 mmu-miR-292-3p beg:257 end:284 pic:3' TGTGAGT--TTTGGACCGCCGTGAAA 5'& . .|. |||||| | ||||.|| &5' GTGTTTTTTAAACCTTG-GGCATTT- 3' Rnf135 mmu-miR-292-5p beg:127 end:149 pic:3' GTTTTCTCG-GGGG-TCAAACTCA 5'& .|| | |. | |||||||| &5' ----GGATCACTGCAAGTTTGAG- 3' Rnf135 mmu-miR-295star beg:133 end:149 pic:3' CTTCACACGGGGTGTAAACTCA 5'& |. || .|||||| &5' --------CTGCAAGTTTGAG- 3' Rnf135 mmu-miR-298 beg:513 end:535 pic:3' CCCTTCTTGTCGGGA------GGAGACGG 5'& |.||| |||||||. &5' ----------GTCCTCACATACCTCTGCT 3' Rnf135 mmu-miR-32 beg:620 end:642 pic:3' ACGTTGAATCATTACACGTTAT 5'& | .| |||.|||| &5' -GTGGCCTTTCA--GTGTAATA 3' Rnf135 mmu-miR-337-3p beg:280 end:299 pic:3' TCCGTAGTATATC-CTCGACTT 5'& ||| ||||||. &5' -----TCAGAGAAAGAGCTGG- 3' Rnf135 mmu-miR-338-3p beg:517 end:538 pic:3' GTTGTTTTAGTGACT----ACGACCT 5'& |||| ||||||| &5' --------TCACATACCTCTGCTGGA 3' Rnf135 mmu-miR-343 beg:557 end:574 pic:3' AGACCCGTGTACTTCCCTCT 5'& || ||.| .|||||| &5' -CT-GGTAA---GAGGGAG- 3' Rnf135 mmu-miR-344 beg:119 end:136 pic:3' TGTCAGTCCGAAACCGATCTAGT 5'& |||. || |.||||| &5' ------AGGTA--GG-TGGATCA 3' Rnf135 mmu-miR-3470a beg:147 end:168 pic:3' GGTCGGACCAGATGTTTCACT 5'& |.||| ||||| |.|||| &5' CTAGCATGGTCAATAAAG--- 3' Rnf135 mmu-miR-3470b beg:227 end:237 pic:3' GGTCGGACCAGATGTCTCACT 5'& .|||||| &5' --------------GGAGTGA 3' Rnf135 mmu-miR-3470b beg:147 end:168 pic:3' GGTCGGACCAGATGTCTCACT 5'& |.||| ||||| |.| || &5' CTAGCATGGTCAATAAAG--- 3' Rnf135 mmu-miR-378star beg:3 end:20 pic:3' TGTGTCCTGGA-CCTCAGTCCTC 5'& ||| ||.||.|||| &5' --------CCTCGGGGTTAGGA- 3' Rnf135 mmu-miR-412 beg:111 end:133 pic:3' GCCGATCACCTG-GTCCACTT 5'& || ||||| .|||||.| &5' -GGAC-GTGGAGGTAGGTGGA 3' Rnf135 mmu-miR-450b-5p beg:122 end:143 pic:3' ATAAGTCCTTGTA-TGACGTTTT 5'& .||| . || |||||||. &5' ----TAGGTGGATCACTGCAAG- 3' Rnf135 mmu-miR-467e beg:506 end:526 pic:3' TGTATATGTACGAGTGTGAATA 5'& .|||||..| ||||||. &5' -TATATATGTCCTCACAT---- 3' Rnf135 mmu-miR-500 beg:578 end:598 pic:3' ACTTGGGAACGGGTCCACGTAA 5'& |.|||| |||.|. |||| &5' -GGACCC-TGCTCGTGTGC--- 3' Rnf135 mmu-miR-615-5p beg:568 end:588 pic:3' CTAGGCTCGTGGCC-CCTGGGGG 5'& ||| |. ||||||. &5' -----GAGTGCTCCTGGACCCT- 3' Rnf135 mmu-miR-654-5p beg:507 end:529 pic:3' TGTGTACAAGACGTCGAATGGT 5'& |.|.|||| || || | |||| &5' ATATATGTCCT-CA-CATACC- 3' Rnf135 mmu-miR-669j beg:498 end:518 pic:3' ACAAACGTACACTC-ATATACGT 5'& |||| || ||||||. &5' -----GCATATGCTATATATGT- 3' Rnf135 mmu-miR-671-5p beg:17 end:32 pic:3' GAGGTCGGGGAGGTC-CCGAAGGA 5'& ||| ||||||.| &5' ------------CAGTGGCTTCTT 3' Rnf135 mmu-miR-672 beg:307 end:336 pic:3' AGTGTGTGTCATGTGG-----TTGGAGT 5'& || | ||||||. ||| ..||||| &5' TC-CTCACAGTG-ACCTCTGAGGCCTCA 3' Rnf135 mmu-miR-674 beg:618 end:638 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& | . || |.||||||. &5' ----CTGTGGCC-TTTCAGTGT 3' Rnf135 mmu-miR-676 beg:167 end:190 pic:3' TCGAGTT---GTTGGAGTCCTGCC 5'& ||.|||| ||.|.| |||| &5' AGTTCAAGGCCAGCTT--GGAC-- 3' Rnf135 mmu-miR-688 beg:398 end:415 pic:3' CTTATTCATCAG-CGGACGCT 5'& |||| |||||.|. &5' -------TAGTAAGCCTGTGG 3' Rnf135 mmu-miR-693-3p beg:280 end:298 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& .|| | |.||||| &5' ------TCAGAGAA-AGAGCTG- 3' Rnf135 mmu-miR-693-5p beg:289 end:311 pic:3' CTTTTGAA-AG-CCTACACCGAC 5'& |.|.|| || ||| ||| || &5' -AGAGCTGGTCTGGA-GTGTCT- 3' Rnf135 mmu-miR-707 beg:114 end:139 pic:3' GCA--TCCGTTCGCCGTACTGAC 5'& ||| |||.|.|.|| || |||| &5' CGTGGAGGTAGGTGG-ATCACTG 3' Rnf135 mmu-miR-707 beg:542 end:563 pic:3' GCATC-CGTT-CGCCGTACTGAC 5'& || ||. |. .||||||| &5' ---AGAGCGCTGTCTTATGACTG 3' Rnf135 mmu-miR-712 beg:522 end:542 pic:3' CCATGGCGGGCCCACTTCCTC 5'& |||| .|.| |||||| &5' --TACC-TCTGCTGGAAGGA- 3' Rnf135 mmu-miR-713 beg:618 end:639 pic:3' CGACACACGG-AAGTCACGT 5'& ||||| ||| |||||||.| &5' -CTGTG-GCCTTTCAGTGTA 3' Rnf135 mmu-miR-872 beg:309 end:324 pic:3' GGACTTGATTGTTCATTGGAA 5'& || || |||.|||| &5' ------CTCAC-AGTGACCT- 3' Rnf135 mmu-miR-878-5p beg:63 end:83 pic:3' ACAGAACTGTAGGTTGATCTAT 5'& ||| | . .|||.|||| &5' ---CTT-AGGGA-GACTGGATA 3' Rnf135 mmu-miR-879 beg:317 end:335 pic:3' CCGAATCTCGATA-TTCGGAGA 5'& || || |.||||| &5' ------GACCTCTGAGGCCTC- 3' Rnf135 mmu-miR-92a beg:622 end:642 pic:3' GTCCGGCCCTGTTCACGTTAT 5'& |||| | ||||.|||| &5' --GGCCTTT-C-AGTGTAATA 3' Rnf135 mmu-miR-92astar beg:430 end:450 pic:3' CATTAC-GG-TGGTTAGGGGTGGA 5'& ||| |. ||| ||||||| &5' ---ATGACTGACC---CCCCACC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf135 RAID00026734 mmu-miR-449c-5p miRNA MIMAT0003460 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00209656 mmu-miR-1905 miRNA MIMAT0007866 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00410074 mmu-let-7c-5p miRNA MIMAT0000523 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00411692 mmu-miR-5620-3p miRNA MIMAT0022368 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00507296 mmu-miR-201-3p miRNA MIMAT0017001 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00577078 mmu-let-7a-5p miRNA MIMAT0000521 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00774827 mmu-miR-1964-5p miRNA MIMAT0017349 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID00879196 mmu-miR-488-3p miRNA MIMAT0003450 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01010300 mmu-miR-212-3p miRNA MIMAT0000659 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01035149 mmu-miR-6923-3p miRNA MIMAT0027747 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01038500 mmu-miR-124-3p miRNA MIMAT0000134 Rnf135 mRNA 71956 Prediction 0.2381 Rnf135 RAID01252028 mmu-miR-7117-3p miRNA MIMAT0028132 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01351500 mmu-miR-449a-5p miRNA MIMAT0001542 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01356689 mmu-miR-202-3p miRNA MIMAT0000235 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01370300 mmu-miR-449b miRNA MIMAT0005447 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01488853 mmu-let-7f-5p miRNA MIMAT0000525 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01504874 mmu-miR-132-3p miRNA MIMAT0000144 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01515953 mmu-miR-665-3p miRNA MIMAT0003733 Rnf135 mRNA 71956 Prediction 0.2202 Rnf135 RAID01587926 mmu-miR-5127 miRNA MIMAT0020638 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01629955 mmu-miR-186-5p miRNA MIMAT0000215 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01713246 mmu-miR-365-3p miRNA MIMAT0000711 Rnf135 mRNA 71956 Prediction 0.2202 Rnf135 RAID01798203 mmu-miR-376c-3p miRNA MIMAT0003183 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01932773 mmu-miR-6982-3p miRNA MIMAT0027867 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID01979334 mmu-miR-433-3p miRNA MIMAT0001420 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02294633 mmu-miR-1668 miRNA MIMAT0031414 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02360345 mmu-miR-7676-5p miRNA MIMAT0029860 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02539919 mmu-let-7b-5p miRNA MIMAT0000522 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02637932 mmu-miR-290a-5p miRNA MIMAT0000366 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02676353 mmu-miR-34b-5p miRNA MIMAT0000382 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02777480 mmu-miR-1224-5p miRNA MIMAT0005460 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02796155 mmu-let-7d-5p miRNA MIMAT0000383 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID02857393 mmu-miR-15a-3p miRNA MIMAT0004624 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03144377 mmu-miR-34a-5p miRNA MIMAT0000542 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03257764 mmu-miR-6919-5p miRNA MIMAT0027738 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03282269 mmu-miR-126b-5p miRNA MIMAT0029894 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03293031 mmu-miR-203-3p miRNA MIMAT0000236 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03350237 mmu-miR-34c-5p miRNA MIMAT0000381 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03416762 mmu-miR-150-5p miRNA MIMAT0000160 Rnf135 mRNA 71956 Prediction 0.2202 Rnf135 RAID03734839 mmu-miR-6948-3p miRNA MIMAT0027797 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03735667 mmu-miR-98-5p miRNA MIMAT0000545 Rnf135 mRNA 71956 Prediction 0.1828 Rnf135 RAID03759408 mmu-miR-292a-5p miRNA MIMAT0000369 Rnf135 mRNA 71956 Prediction 0.1828