DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004574 mmu-miR-294* 217333 Trim47 ucuaUCCCGGAGGUAAAACUCa ||| |:| :||||||| uugcAGGACUU--GUUUUGAGa 2 19 123 142 [mm9:11:115967173-115967192:-] 0.5538 151 7 -12.48 -0.7960 MIMAT0004630 mmu-miR-26b* 217333 Trim47 cucgguucauuACCUCUUGUCc | |||||||| caggacuuguuUUGAGAACAGa 2 12 126 147 [mm9:11:115967168-115967189:-] 0.5589 147 7 -13.68 -0.9407 MIMAT0003495 mmu-miR-705 217333 Trim47 acGGGUGGGGU---GGAGGGUGg |: :||:|| ||||||| caCUAGCCUCAGAGACUCCCACa 2 19 57 79 [mm9:11:115967236-115967258:-] 0.4510 145 7 -24.40 -0.5083 MIMAT0004888 mmu-miR-493 217333 Trim47 ggACCGUGUGUCAUCCUGGAAGu || :| : || ||||||| cuUGAGGCCUUCUA-GACCUUCc 2 22 98 119 [mm9:11:115967196-115967217:-] 0.5346 143 7 -14.35 -0.5299 MIMAT0004893 mmu-miR-574-5p 217333 Trim47 uguguGAG--UGUGUGUGUGUGAGu ||| | || | ||||||| cuagcCUCAGAGACUCCCACACUCc 2 19 59 83 [mm9:11:115967232-115967256:-] 0.4832 153 7 -19.68 -0.1723 MIMAT0007873 mmu-miR-1896 217333 Trim47 gaggaGUGGGUGGUAGUCUCUc |||: :|| ||||||| gaaggCACUAGCC-UCAGAGAc 2 18 52 72 [mm9:11:115967243-115967263:-] 0.4510 155 7 -19.51 -0.1031 MIMAT0009426 mmu-miR-1955 217333 Trim47 uuuucgacGUCACGUAG--GACCCUGa ||| | |: ||||||| uuugagaaCAGAUCUUUAGCUGGGACa 2 18 136 162 [mm9:11:115967153-115967179:-] 0.5589 144 7 -16.10 -0.7248 MIMAT0000122 mmu-let-7i 217333 Trim47 uuGUCGUGUUUGAUGAU-GGAGu :|| : ||: |||| |||| gcUAGGGGAAGGCACUAGCCUCa 2 21 45 67 [mm9:11:115967248-115967270:-] 0.4510 120 0 -17.16 -0.1717 MIMAT0000246 mmu-miR-122 217333 Trim47 guuuguggUAACAGUGUGAGGu | | |||||||| ccucagagACUCCCACACUCCu 2 15 63 84 [mm9:11:115967231-115967252:-] 0.4832 146 7 -19.30 -0.1108

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G070189 Trim47 Mus musculus 217333

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim47 mmu-miR-26bstar beg:128 end:147 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& | || | |||||||| &5' ----CTTGTTTT-GAGAACAG- 3' Trim47 mmu-miR-337-5p beg:17 end:35 pic:3' TTGAGGACGTACTGCGGCAAG 5'& |||||. |.||||||| &5' ---TCCTGT--GGCGCCGTT- 3' Trim47 mmu-miR-493 beg:100 end:119 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||| | ||||||| &5' ---GGC-CTTCTA--GACCTTC- 3' Trim47 mcmv-miR-m108-1 beg:52 end:72 pic:3' GCTGTGCTCGGTGGCAGTCTTT 5'& |.||| |||| |||||.| &5' -GGCACTAGCC----TCAGAGA 3' Trim47 mghv-miR-M1-7-5p beg:109 end:125 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& | |.|||||.|| &5' --------GACCTTCCACTTT- 3' Trim47 mmu-miR-1190 beg:140 end:158 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& ||||| |.|.|||||. &5' -ACAGAT-----CTTTAGCTGG 3' Trim47 mmu-miR-122 beg:63 end:84 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||.| ||. |||||||| &5' CAGAGACTCC---CACACTCC- 3' Trim47 mmu-miR-1274a beg:118 end:135 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& || .|| ||||.|| &5' ------CTTTGCA-GGACTTG- 3' Trim47 mmu-miR-129-5p beg:51 end:72 pic:3' CGTTCG-GGTCTGGCGTTTTTC 5'& |.|| |.|| || ||.|.| &5' --AGGCACTAG-CCTCAGAGA- 3' Trim47 mmu-miR-151-3p beg:152 end:174 pic:3' GGAGTTCCTCG-GA-GTCAGATC 5'& | .||| || ||||||. &5' ---CTGGGACAACTCCAGTCTG- 3' Trim47 mmu-miR-1954 beg:114 end:129 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& || ||||.||||| &5' -------TC-CACTTTGCAG- 3' Trim47 mmu-miR-2135 beg:131 end:153 pic:3' CAAAGC-CGGGGTTCTGGAGA 5'& ||||.| | | |||.||.| &5' GTTTTGAGAAC--AGATCTTT 3' Trim47 mmu-miR-2135 beg:100 end:117 pic:3' CAAAGCCGGGGT-TCTGGAGA 5'& ||||.. ||||||. &5' -----GGCCTTCTAGACCTT- 3' Trim47 mmu-miR-294star beg:124 end:142 pic:3' TCTATCCCGGAGGTAAAACTCA 5'& ||| | . ||||||| &5' ----AGGA-C-TTGTTTTGAG- 3' Trim47 mmu-miR-299 beg:23 end:43 pic:3' TTCGCCAAATGGCA--GGGTGTAT 5'& |.|| .|||| ||||.|| &5' --GTGGC--GCCGTTGCCCATAT- 3' Trim47 mmu-miR-511 beg:41 end:59 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& ||| || ..|||||| &5' ----TGCT-AGGGGAAGGCA- 3' Trim47 mmu-miR-705 beg:101 end:123 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& |||. |. ||||.||||. &5' -GCCTTCTAGACCTTCCACT 3' Trim47 mmu-miR-710 beg:118 end:135 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& ||.. ||.|||||| &5' -------CTTTGCAGGACTTG- 3' Trim47 mmu-miR-1896 beg:54 end:72 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& |||. .|| ||||||| &5' -----CACTAGCC-TCAGAGA- 3' Trim47 mmu-miR-2182 beg:11 end:30 pic:3' GCGCCGCACCCTTT---ACACCGCA 5'& |||| ||||||| &5' -------TGGGTCATCCTGTGGCG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim47 RAID00075524 mmu-miR-881-3p miRNA MIMAT0004846 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID00628731 mmu-miR-6917-5p miRNA MIMAT0027734 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID00908663 mmu-miR-486a-3p miRNA MIMAT0017206 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID00986679 mmu-miR-33-3p miRNA MIMAT0004666 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID01102892 mmu-miR-3083-5p miRNA MIMAT0014874 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID01233122 mmu-miR-7665-3p miRNA MIMAT0029837 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID01246883 mmu-miR-3067-5p miRNA MIMAT0014840 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID01477055 mmu-miR-1955-5p miRNA MIMAT0009426 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID01711439 mmu-miR-6954-5p miRNA MIMAT0027808 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID01908627 mmu-miR-7653-5p miRNA MIMAT0029812 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID02239523 mmu-miR-486b-3p miRNA MIMAT0014944 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID02818947 mmu-miR-7037-5p miRNA MIMAT0027978 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID02852328 mmu-miR-122-5p miRNA MIMAT0000246 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID02879517 mmu-miR-3547-3p miRNA MIMAT0027833 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID03423274 mmu-miR-466n-5p miRNA MIMAT0014893 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID03424156 mmu-miR-325-3p miRNA MIMAT0004640 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID03457785 mmu-miR-7a-1-3p miRNA MIMAT0004670 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID03635723 mmu-let-7i-5p miRNA MIMAT0000122 Trim47 mRNA 217333 Prediction 0.1828 Trim47 RAID03843352 mmu-miR-326-5p miRNA MIMAT0017027 Trim47 mRNA 217333 Prediction 0.1828