Prpf8
DNA & RNA Element - AREsite
Gene NameMotifCDS AreaARE AreaEvidence
Prpf8; Prp8ATTTA316-33544370-4374;4749-4753;6418-6422
DNA & RNA Element - circBase
circRNA IDChromStartEndStrand
mmu_circ_0000293chr117530765175307733-
mmu_circ_0000291chr117530546375305539+
mmu_circ_0000292chr117530556975305623-
DNA & RNA Element - miRTarBase
Target Gene (Entrez ID)miRTarBase IDmiRNASpecies (miRNA)Target GeneSpecies (Target Gene)ExperimentsSupport TypeReferences (PMID)
MIRT014936mmu-miR-136-5pMus musculusPrpf8192159Mus musculusSequencingFunctional MTI (Weak)19536157
MIRT014272mmu-miR-181a-5pMus musculusPrpf8192159Mus musculusSequencingFunctional MTI (Weak)19536157
MIRT009645mmu-miR-223-3pMus musculusPrpf8192159Mus musculusSequencingFunctional MTI (Weak)19536157
MIRT006189mmu-miR-125b-1-3pMus musculusPrpf8192159Mus musculusLuciferase reporter assay//qRT-PCR//Western blotFunctional MTI21379568
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004527mmu-miR-124*192159Prpf8uaguuccaggcgacACUUGUgc |||||| auagauuguaauccUGAACAaa39113134[mm9:11:75322904-75322925:+]0.55271200-7.73-0.1722
MIMAT0000137mmu-miR-126-5p192159Prpf8gcGCAUGGUUUUCAUUAUUac :| || ||| ||||||| ccUGAACAAAAUGUAAUAAau320125145[mm9:11:75322916-75322936:+]0.55271470-8.82-0.1312
MIMAT0000154mmu-miR-142-5p192159Prpf8ucaUCACGAAAGAUGAAAUAc | ||: | |:||||| caaAAUGUAAUAAAUUUUAUa219131151[mm9:11:75322922-75322942:+]0.55271300-6.83-0.1603
MIMAT0004620mmu-let-7a*192159Prpf8ccUUUCUGUCAUCUAACAUAUc ||| ::| || ||| |||| caAAAUGUAAUAAAUUUUAUAa221131152[mm9:11:75322922-75322943:+]0.55271360-1.10-0.1854
MIMAT0004621mmu-let-7b*192159Prpf8cccUUCCGUCAUCCAACAUAUc || |:| || || |||| caaAAUGUAAUAAAUUUUAUAa220131152[mm9:11:75322922-75322943:+]0.55271270-1.10-0.1837
MIMAT0005439mmu-let-7c-2*192159Prpf8ccUUUCUGUCAUCUAACAUAUc ||| ::| || ||| |||| caAAAUGUAAUAAAUUUUAUAa221131152[mm9:11:75322922-75322943:+]0.55271360-1.10-0.1854
MIMAT0004623mmu-let-7f*192159Prpf8cccUUCCGUUAUCUAACAUAUc || |:|||| ||| |||| caaAAUGUAAUAAAUUUUAUAa220131152[mm9:11:75322922-75322943:+]0.55271430-4.86-0.1803
MIMAT0004636mmu-miR-93*192159Prpf8gcccUUC-ACGAUCG--AGUCGUCa ||| ||||: | ||||||| agacAAGCUGCUGACAUUCAGCAGu2195680[mm9:11:75322847-75322871:+]0.51021567-21.03-0.1265
MIMAT0000569mmu-miR-330*192159Prpf8agAGACGUCCGGGACACGAA-ACg |:||| |::|||||||| || ccUUUGC--GUUCUGUGCUUGUGu22286107[mm9:11:75322877-75322898:+]0.51021340-24.82-0.5409
MIMAT0004789mmu-miR-450a-3p192159Prpf8uacuuacguuUCGUAGGGGUUa || |||||||| cuucugcuucAG-AUCCCCAAa213828[mm9:11:75322799-75322819:+]0.42581467-15.88-0.1804
MIMAT0004189mmu-miR-693-3p192159Prpf8aaUGUCGGUGUAGACU-UUCGACg ||: || | | || |||||| gaACGCCCUCCCCAGACAAGCUGc2224366[mm9:11:75322834-75322857:+]0.51021256-17.04-0.1129
MIMAT0003476mmu-miR-669b192159Prpf8uguACGUGUACG-UGUGUUUUGa ||:| || | : ||||||: gauUGUA-AUCCUGAACAAAAUg220116137[mm9:11:75322907-75322928:+]0.55271320-6.78-0.1321
MIMAT0004839mmu-miR-743b-5p192159Prpf8acuaccuguggucaGACUUGu |||||| gauagauuguaaucCUGAACa28112132[mm9:11:75322903-75322923:+]0.55271206-11.92-0.5219
MIMAT0000125mmu-miR-23b192159Prpf8ccAUUAGGGACCG--UUACACUa ||||||: | ||||| | ugUAAUCCUGAACAAAAUGUAAu220119141[mm9:11:75322910-75322932:+]0.55271220-13.51-0.1046
MIMAT0004651mmu-miR-340-5p192159Prpf8uuagUCAGAGUA-ACGAAAUAUu | | | || :|||||| acaaAAUGUAAUAAAUUUUAUAa219130152[mm9:11:75322921-75322943:+]0.55271256-4.35-0.5372
MIMAT0000739mmu-miR-375192159Prpf8agugcgcucggcuuGCUUGUUu :|||||| auagauuguaauccUGAACAAa29113134[mm9:11:75322904-75322925:+]0.55271246-9.41-0.1991
MIMAT0005850mmu-miR-1192192159Prpf8uuAAAC-C-AGACA--AACA-AACAAa |||| | ||||| |||| ||||| ccUUUGCGUUCUGUGCUUGUGUUGUUg22186112[mm9:11:75322877-75322903:+]0.53151330-12.36-0.7848
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G045298Prpf8Mus musculus19215919536157 0 0 R44930; MOUSE$PRPF8_01; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-672-5p , mmu-miR-98-5p // 0 0 R44931; MOUSE$PRPF8_02; Binding factors: mmu-miR-105 , mmu-miR-106a-5p , mmu-miR-106b-5p , mmu-miR-17-5p , mmu-miR-20a-5p , mmu-miR-20b-5p , mmu-miR-290a-3p , mmu-miR-291a-3p , mmu-miR-291b-3p , mmu-miR-292a-3p , mmu-miR-294-3p , mmu-miR-295-3p , mmu-miR-302a-3p , mmu-miR-302b-3p , mmu-miR-302c-3p , mmu-miR-302d-3p , mmu-miR-467a-5p , mmu-miR-467b-5p , mmu-miR-467c-5p , mmu-miR-467d-5p , mmu-miR-93-5p
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Prpf8mmu-let-7abeg:0end:19pic:3' TTGATATGTTGGATGATGGAGT 5'& ||| ||| ||.|.||| &5' -----TACTTCCTTCTGCTTCA 3'
Prpf8mmu-let-7bbeg:0end:19pic:3' TTGGTGTGTTGGATGATGGAGT 5'& .|| ||| ||.|.||| &5' -----TACTTCCTTCTGCTTCA 3'
Prpf8mmu-let-7cbeg:0end:19pic:3' TTGGTATGTTGGATGATGGAGT 5'& ||| ||| ||.|.||| &5' -----TACTTCCTTCTGCTTCA 3'
Prpf8mmu-let-7ebeg:0end:19pic:3' TTGATATGTTGGAGGATGGAGT 5'& ||| |||.||.|.||| &5' -----TACTTCCTTCTGCTTCA 3'
Prpf8mmu-miR-1892beg:34end:59pic:3' TAGGAGGGA----GGGCAGGGGTTTA 5'& ||||.. ||| ||||||.| &5' --CCTCTTGAACGCCC-TCCCCAGA- 3'
Prpf8mmu-miR-1892beg:1end:29pic:3' TAGGAGGGAGGGC-------AGGGGTTTA 5'& ||.|||.|.| |||||||| &5' ---CTTCCTTCTGCTTCAGATCCCCAAA- 3'
Prpf8mmu-miR-1948beg:93end:118pic:3' GACATGCTCACGA-GACGGATTT 5'& ||||.| |||.| .|| ||.| &5' CTGTGCTTGTGTTGTTGA-TAGA 3'
Prpf8mmu-miR-196astarbeg:90end:114pic:3' AGTCCGTCAAAGA-------ACAACGGCT 5'& || |||| |||||..|| &5' ----GCG--TTCTGTGCTTGTGTTGTTGA 3'
Prpf8mmu-miR-330starbeg:84end:108pic:3' AGAGACGTCCGGGACACGAA-ACG 5'& ||.||| |..|||||||| ||. &5' -CTTTGC--GTTCTGTGCTTGTGT 3'
Prpf8mmu-miR-450a-3pbeg:9end:28pic:3' TACTTACGTT-TCGTAGGGGTTA 5'& ||| || |||||||| &5' -----TGCTTCAG-ATCCCCAA- 3'
Prpf8mmu-miR-450a-3pbeg:39end:58pic:3' TACTTACGTTTCGTAGGGGTTA 5'& |||| || | ||||||. &5' -TGAACGC----CCTCCCCAG- 3'
Prpf8mmu-miR-743b-5pbeg:113end:133pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||| |.| ||||||| &5' -GATTGTAATC---CTGAACA 3'
Prpf8mmu-miR-759beg:85end:100pic:3' CAGTTTTAACAAACGTGAGACG 5'& |||||..||||. &5' ----------TTTGCGTTCTGT 3'
Prpf8mmu-miR-879beg:25end:42pic:3' CCGAATCTCGATATTCGGAGA 5'& ||| .||||||| &5' -------AGCCTGGAGCCTCT 3'
Prpf8mmu-miR-93starbeg:61end:81pic:3' GCCCTTCACGATC--GAGTCGTCA 5'& ||||. .|||||||| &5' -------TGCTGACATTCAGCAGT 3'
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
Prpf8; Prp8mmu-let-7a120UGAUAUGUUGGAUGAUGGAGU- ||| ||| ||:|:|||---UUACUUCCUUCUGCUUCAG
Prpf8; Prp8mmu-let-7e120UGAUAUGUUGGAGGAUGGAGU- ||| |||:||:|:|||---UUACUUCCUUCUGCUUCAG
Prpf8; Prp8mmu-miR-101b71108GAAGUCGAUAGU-------------GUCAUGA-CAU- |||||| :||| | ||:|| ||:AUUCAGCAGUCAGCCCCUUUGCGUUCUGUGCUUGUGU
Prpf8; Prp8mmu-miR-1034669AGUAUCGGGACA----UGUUACGACGA- ||||| |||| ||||||----CGCCCUCCCCAGACAA-GCUGCUG
Prpf8; Prp8mmu-miR-1074169-ACUAUCGGGACA----UGUUACGACGA- ||| ||||| |||| ||||||UUGAACGCCCUCCCCAGACAA-GCUGCUG
Prpf8; Prp8mmu-miR-13483110-GGGGAGAC-CAGU---UGGU--CAGUGU |||||:|| ||: :|: ||:GCCCCUUUGCGUUCUGUGCUUGUGUUG--
Prpf8; Prp8mmu-miR-1492646CCUCACUUCUGUGCCUCGGU---CU- ||| | :|||||| ||-----AAAG-CCUGGAGCCUCUUGAA
Prpf8; Prp8mmu-miR-2066599GGUGUGUGAA------------GGAAUGUAAGGU | |||:| |:||:|:|||:GCUGACAUUCAGCAGUCAGCCCCUUUGCGUUCUG
Prpf8; Prp8mmu-miR-3263060UGACCUC------CUUCCC----GGGUCUCC |||||| ||| | ||||||CCUGGAGCCUCUUGAACGCCCUCCCCAGAC-
Prpf8; Prp8mmu-miR-33086109AGAGACGUCCGGGACACGAA-ACG- ||:||| |::|||||||| ||:CCUUUGC--GUUCUGUGCUUGUGUU
Prpf8; Prp8mmu-miR-3456186CGUGAC--CUGA---UCCCCAGUCGU :||| ||| || ||||||-AGCUGCUGACAUUCAGCAGUCAGCC
Prpf8; Prp8mmu-miR-3702765-UUGGUCCAAGGU------------GGGGUC-GUCCG- |:|| || || |||||| || ||AAGCCUGGAGCCUCUUGAACGCCCUCCCCAGACAAGCU
Prpf8; Prp8mmu-miR-380-5p6187-CG-CGUAC---AAGAUACCAGUUGGU || || || ||| ||||:||AGCUGC-UGACAUUCAGCAGUCAGCCC
Prpf8; Prp8mmu-miR-4245270AGGUUUUGUACUUAACGACGAC- || |:||| |||||||CCCCAGACAA-----GCUGCUGA
Prpf8; Prp8mmu-miR-4685484-GUCUGUGUG-CGUGUA------GUCAGUAU |||||| :| || | ||||||CCAGACAAGCUGCUGACAUUCAGCAGUCAG-
Prpf8; Prp8mmu-miR-485-5p1443CUUAAGUA-----GUGCCGG---UCGGAGA- |||| || ||| |||||||--CUUCAGAUCCCCAAAGCCUGGAGCCUCUU
Prpf8; Prp8mmu-miR-4913658-GGAGUACCUUCCCA-AGGGGUGA |||| ||| | ||||||GCCUCUU-GAACGCCCUCCCCAG-
Prpf8; Prp8mmu-miR-4974670AUGUUUGGUGUCACA-CGACGAC- :| || ||| |||||||CGCCCUCCCCAGACAAGCUGCUGA
Prpf8; Prp8mmu-miR-5055372UCUUUUGGUC-GUUC-ACAACUGC |||| |||| || ||||-----CCCAGACAAGCUGCUGACA
Prpf8; Prp8mmu-miR-5416391-AC-ACUG---GUUGU-AGUCUUAGGGAA- || |||| ||:|| |||| |||||CUGCUGACAUUCAGCAGUCAGC--CCCUUU
Prpf8; Prp8mmu-miR-6652845AUUCCCUGGAGU-CGGAGGACCA :||| : |||||:||-----AGCCUGGAGCCUCUUGA-
Prpf8; Prp8mmu-miR-6734971-GAGGUUCCUGGUCUCGAC-ACUC |||| ||| ||||| |||CCUCCCCAGACA--AGCUGCUGAC
Prpf8; Prp8mmu-miR-6795283UGGUUCUCA--GUGGAG-------UGUCAGG || ||| | || :|||||CCCCAGACAAGCUGCUGACAUUCAGCAGUCA
Prpf8; Prp8mmu-miR-6835681CUCCUGUGU--CGAAU----GUCGUCC |||| ||| ||||||--AGACAAGCUGCUGACAUUCAGCAGU
Prpf8; Prp8mmu-miR-6887495CUUAUUCAUCAG-CGG----ACGCU || |||| ||| ||||----CAGCAGUCAGCCCCUUUGCGU
Prpf8; Prp8mmu-miR-693-3p2768AAUGUCGGUGU----AG-ACU---------------UUCGACG |||| : || ||| |||||||---AAGCCUGGAGCCUCUUGAACGCCCUCCCCAGACAAGCUGCU
Prpf8; Prp8mmu-miR-7052857ACGGG---UGGGGU-------GGAGGGUGG |||: :||:| |||||| |AGCCUGGAGCCUCUUGAACGCCCUCCC-CA
Prpf8; Prp8mmu-miR-709527-AGGAGGACGGAGAC--GGAGG- ||||:||||:|| || ||UUCCUUCUGCUUCAGAUCC-CCA
Prpf8; Prp8mmu-miR-7111134GAAUGUAGAG-AGGGGCCCAGGG- |:| || ||||| ||:-CUGCUUCAGAUCCCCAAAGCCUG
Prpf8; Prp8mmu-miR-7446495-CGACAA----UCGGGA-UCGGGG---CGU- |||| ||| |||||| ||:UGCUGACAUUCAGCAGUCAGCCCCUUUGCGU
Prpf8; Prp8mmu-miR-75978101-CAGUUUUAACAAACGUGAGACG- ||||: |||||::||||:AGUCAGCCCC-UUUGCGUUCUGUG
Prpf8; Prp8mmu-miR-7626189-CGA-GACA--GGGCCGG-GGUCGGGG- ||| ||| ::| || :|||||||AGCUGCUGACAUUCAGCAGUCAGCCCCU
Prpf8; Prp8mmu-miR-8015683CAGCUAA--GGCGUGC-GU--GUCGUUAG- || |:|| :| || |||||:||--AGACAAGCUGC-UGACAUUCAGCAGUCA
Prpf8; Prp8mmu-miR-1034267aguauCGGGACAUGU---UACGACGA ||||| || | ||||||tgaacGCCCTCCCCAGACAAGCTGCT
Prpf8; Prp8mmu-miR-1074267ACUAUCGGGACAUGU---UACGACGA||| ||||| || | ||||||TGAACGCCCTCCCCAGACAAGCTGCT
Prpf8; Prp8mmu-miR-1345284GGGG------AGAC--CAGU---UGGUCAGUgu|||| ||| | || | ||||||CCCCAGACAAGCTGCTGACATTCAGCAGTCAgc
Prpf8; Prp8mmu-miR-1492141ccucacUUCUGUGCCUCGGucu ||| | :||||||tccccaAAG-CCTGGAGCCtct
Prpf8; Prp8mmu-miR-2065476GGUGUGU--GAAGGAAUGUAAGgu||| ||| | | || ||||||CCAGACAAGC-TGCTGACATTCag
Prpf8; Prp8mmu-miR-3263060uGACCUC------CUUCC----CGGGUCUcc |||||| ||| | ||||||cCTGGAGCCTCTTGAACGCCCTCCCCAGAca
Prpf8; Prp8mmu-miR-3456285CG-UGAC-CUGA-UCCCCAGUCGu|| :||| |:| || ||||||GCTGCTGACATTCAGCAGTCAGCc
Prpf8; Prp8mmu-miR-3705781uUGGUCCAAGG-UG-GGGUCGUCcg || || | |: || ::||||||gACAAGCTGCTGACATTCAGCAGtc
Prpf8; Prp8mmu-miR-380-5p6286CG-CGUAC---AAGAUACCAGUUGGu|| || || ||| : ||||:||GCTGC-TGACATTCAGCAGTCAGCCc
Prpf8; Prp8mmu-miR-4685584GUCUGUGUG-CG--UGUA----GUCAGUau|||||| :| || |||| ||||||CAGACAAGCTGCTGACATTCAGCAGTCAgc
Prpf8; Prp8mmu-miR-485-5p2041cuuaaguagugccggUCGGAGA |||||||atccccaaagcctggAGCCTCT
Prpf8; Prp8mmu-miR-4913758GGAGUACCUUCCCAAGGGGUga|||| || | | ||||||CCTCTTGAACGCCCTCCCCAga
Prpf8; Prp8mmu-miR-4974768auguuuggugucacaCGACGAC |||||||gccctccccagacaaGCTGCTG
Prpf8; Prp8mmu-miR-5054871ucuuuuGGUC-GUUC-ACAACUGc |||| |||| || ||||ccctccCCAGACAAGCTGCTGACa
Prpf8; Prp8mmu-miR-5416489AC-ACUGGUUGUAGUC--UUAGGGAA|| |||| || ||| |: |||||TGCTGACATTCAGCAGTCAGCCCCTT
Prpf8; Prp8mmu-miR-6652645aUUCCCUGGA-GUCGGAGGACca ||| ||| ||||||:||aAAG---CCTGGAGCCTCTTGaa
Prpf8; Prp8mmu-miR-6735070GAGGUUCCUGGUCUCGAC-ACUc|||| || || ||||| |||CTCCCCAGA-CA-AGCTGCTGAc
Prpf8; Prp8mmu-miR-6795782ugGUUC--UCAGUG-GAGU-GUCAGg |||| : | || :||| |||||gaCAAGCTGCTGACATTCAGCAGTCa
Prpf8; Prp8mmu-miR-6835480cucCUGU--GUCGA----AUGUCGUCc |||| | ||| | ||||||ccaGACAAGCTGCTGACATTCAGCAGt
Prpf8; Prp8mmu-miR-6887094cUUAUUCAUCAG-CGG----ACGCu | | || |||| ||| ||||cATTCAGCAGTCAGCCCCTTTGCGt
Prpf8; Prp8mmu-miR-693-3p4366aaUGUCGGUGUAGACU-UUCGACG ||: || | | || |||||||gaACGCCCTCCCCAGACAAGCTGC
Prpf8; Prp8mmu-miR-7053557aCGG-G---UGGGGUGGAGGGugg ||| | | | | ||||||aGCCTCTTGAACGC-CCTCCCcag
Prpf8; Prp8mmu-miR-709318aGGAGGACGGAGACGGAGg |:|||| |||||:||aCTTCCT---TCTGCTTCa
Prpf8; Prp8mmu-miR-711124gAAUGUAG--AGA-GGGGCCCAGGG |||| || ||| |::| | ||||-TTACTTCCTTCTGCTTCAGATCCC
Prpf8; Prp8mmu-miR-7446590CGAC---AA-UCGGGA-UCGGGGcgu|||| || ||| | ||||||GCTGACATTCAGCAGTCAGCCCCttt
Prpf8; Prp8mmu-miR-7626287CGA-GACAG--GGCCG-GGGUCGGGG||| ||| | :| || :|||||||GCTGCTGACATTCAGCAGTCAGCCCC
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Prpf8RAID00401000mmu-miR-136-5pmiRNAMIMAT0000148Prpf8mRNA192159NGS (Next Generation Sequencing)0.5483
Prpf8RAID00803010mmu-miR-181a-5pmiRNAMIMAT0000210Prpf8mRNA192159NGS (Next Generation Sequencing)0.5483
Prpf8RAID01130036mmu-miR-7116-3pmiRNAMIMAT0028130Prpf8mRNA192159Prediction0.1828
Prpf8RAID01212890mmu-miR-223-3pmiRNAMIMAT0000665Prpf8mRNA192159NGS (Next Generation Sequencing)0.5483
Prpf8RAID01246121mmu-miR-6951-3pmiRNAMIMAT0027803Prpf8mRNA192159Prediction0.1828
Prpf8RAID01670239mmu-miR-126b-5pmiRNAMIMAT0029894Prpf8mRNA192159Prediction0.1828
Prpf8RAID02850798mmu-miR-1192miRNAMIMAT0005850Prpf8mRNA192159CLIP-seq//Prediction0.6308
Prpf8RAID02855126mmu-miR-23b-3pmiRNAMIMAT0000125Prpf8mRNA192159Prediction0.1828
Prpf8RAID03549911mmu-miR-125b-1-3pmiRNAMIMAT0004669Prpf8mRNA192159Reporter Assay//RT-PCR//Western Blot0.9526
Prpf8RAID03611032mmu-miR-375-3pmiRNAMIMAT0000739Prpf8mRNA192159Prediction0.1828
Prpf8RAID03633425mmu-miR-6986-3pmiRNAMIMAT0027875Prpf8mRNA192159Prediction0.1828
Prpf8RAID03884595mmu-miR-340-5pmiRNAMIMAT0004651Prpf8mRNA192159Prediction0.1828