Trim27
DNA & RNA Element - miRTarBase
Target Gene (Entrez ID)miRTarBase IDmiRNASpecies (miRNA)Target GeneSpecies (Target Gene)ExperimentsSupport TypeReferences (PMID)
MIRT596916mmu-miR-10b-5pMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596918mmu-miR-339-5pMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596917mmu-miR-10a-5pMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT585537mmu-miR-546Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)25083871
MIRT585537mmu-miR-546Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596914mmu-miR-690Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596915mmu-miR-706Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596912mmu-miR-665-3pMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596909mmu-miR-804Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596911mmu-miR-1195Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT585536mmu-miR-1946aMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)25083871
MIRT585536mmu-miR-1946aMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT585535mmu-miR-1965Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)25083871
MIRT585535mmu-miR-1965Mus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596910mmu-miR-3089-5pMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
MIRT596913mmu-miR-3096b-5pMus musculusTrim2719720Mus musculusHITS-CLIPFunctional MTI (Weak)21258322
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000217mmu-miR-188-5p19720Trim27ggGAGGUGGUAC--GUUCCCUAc || | ||| | |||||||| ucCUACCCCAGGCACAAGGGAUc2203860[mm9:13:21284532-21284554:+]0.51281587-24.47-0.1312
MIMAT0004628mmu-miR-21*19720Trim27cuGUCGGGUAGCUGACGACAAc :|| ||| | | ||||||| cgUAGACCA-CAAGUGCUGUUg2211030[mm9:13:21284504-21284524:+]0.56451587-19.78-0.2938
MIMAT0000551mmu-miR-323-3p19720Trim27ucUCCAGCUGGC-ACAUUACac || |:| | ||||||| gcAGAUUGUGAGAUGUAAUGaa320169190[mm9:13:21284663-21284684:+]0.57141300-12.77-0.1562
MIMAT0000593mmu-miR-34419720Trim27ugucaguccgaaaccGAUCUAGu ||||||: ucccagaaauaaaaaCUAGAUUc29204226[mm9:13:21284698-21284720:+]0.58131240-9.04-0.1240
MIMAT0004660mmu-miR-19a*19720Trim27caucacguugauacgUUUUGAu |||||| uauuucccagaaauaAAAACUa28200221[mm9:13:21284694-21284715:+]0.58661206-7.51-0.2664
MIMAT0004704mmu-miR-335-3p19720Trim27ccAGUCCUCGUUAUUACUUUUu |:: ||| :||||||||| gaUUGUGAGAUGUAAUGAAAAg221172193[mm9:13:21284666-21284687:+]0.57141647-14.24-0.8822
MIMAT0002111mmu-miR-47019720Trim27ugagUGGUCACGGU-CAGGUUCUu | :| |||:| ||| ||| gaaaAGUAUUGCUAUUUCCCAGAa220188211[mm9:13:21284682-21284705:+]0.58661220-11.31-0.1359
MIMAT0003733mmu-miR-66519720Trim27ucccuggagucGGAGGACca ||||||| aaaacuagauuCCUCCUG--310215232[mm9:13:21284709-21284726:+]0.58131250-13.51-0.3060
MIMAT0015219mmu-miR-347519720Trim27aagUUUGGUACACGGAGGUCu ||||:| | ||||| | uaaAAACUAGAUUCCUCCUG-219213232[mm9:13:21284707-21284726:+]0.58131300-13.91-0.1297
MIMAT0003740mmu-miR-67419720Trim27auGUGGUGAGGGUA----GA-GUCACg :||||:|:||:| || ||||| cuUACCAUUUCCGUGCCCCUACAGUGa22195121[mm9:13:21284589-21284615:+]0.47081270-25.59-0.3584
MIMAT0003510mmu-miR-71719720Trim27ucUCUUCCAUAGAGACA-GACUc | |||| |||| ||| |||| gcACAAGGGAUCU-UGUCCUGAu2214970[mm9:13:21284543-21284564:+]0.51281340-14.10-0.1095
MIMAT0003512mmu-miR-450b-3p19720Trim27uaCGUACGUUUUACAAGGGUUa |:|| :: || ||||||: aaGUAU-UGCUAU-UUCCCAGa221191210[mm9:13:21284685-21284704:+]0.58661280-13.26-0.2612
MIMAT0004932mmu-miR-878-5p19720Trim27acagaaCUGUA-GGUUGAUCUAu || || |||||||| uucccaGAAAUAAAAACUAGAUu217203225[mm9:13:21284697-21284719:+]0.58131477-11.03-1.2043
MIMAT0005831mmu-miR-669k19720Trim27aacGUACGCACAUAU-ACGUAu |||| || | || ||||| aucCAUG-GUCUCUACUGCAUu219136156[mm9:13:21284630-21284650:+]0.55631240-8.97-0.4666
MIMAT0005842mmu-miR-669h-3p19720Trim27acACGUACACACAUAU-ACGUAu | |||| || | || ||||| caUCCAUG-GUCUCUACUGCAUu221135156[mm9:13:21284629-21284650:+]0.55631260-8.97-0.4666
MIMAT0005857mmu-miR-119619720Trim27uccgucuccguccAUCUAAa |||||| cagaaauaaaaacUAGAUUc28207226[mm9:13:21284701-21284720:+]0.58131206-5.45-0.1480
MIMAT0005858mmu-miR-119719720Trim27ucuucaUCUGGUACACAGGAu | |::: ||||||| ccaucaAAAUUGGGUGUCCUu2167797[mm9:13:21284571-21284591:+]0.47921477-13.30-0.3295
MIMAT0007878mmu-miR-1894-3p19720Trim27gagGGAAGUGGGAGAGGGAACg | ||: |||| ||||||| cugCAUUUUCCCU-UCCCUUGc220150170[mm9:13:21284644-21284664:+]0.55631617-24.14-0.5925
MIMAT0009394mmu-miR-193119720Trim27cgGUAGCGUGGUCGGGAACGUa |||: : || |||||||| ugCAUUUUCCCUUCCCUUGCAg221151172[mm9:13:21284645-21284666:+]0.55631607-20.04-0.4286
MIMAT0009404mmu-miR-194019720Trim27uugacgagguggaagagUCAGGAGGua | |||||| ccagaaauaaaaacuagAUUCCUCCug311206232[mm9:13:21284700-21284726:+]0.58131220-11.33-0.3112
MIMAT0015646mmu-miR-347419720Trim27cuuagGUGCAGA-GGAGGGUCcc :|: || ::|||||| aaaagUAUUGCUAUUUCCCAGaa318189211[mm9:13:21284683-21284705:+]0.58661240-13.85-0.4074
MIMAT0000210mmu-miR-181a19720Trim27ugAGUGGCUGUCGCA-ACU-UACAa || |: :||| | ||| |||| cuUCCCUUGCAGAUUGUGAGAUGUa222161185[mm9:13:21284655-21284679:+]0.57141200-12.26-1.1372
MIMAT0000213mmu-miR-18419720Trim27ugGGAAUAGUCAAGAGG-CAGGu :|||:|| :||| |||| gaUCUUGUCCUGAUUCCUGUCCa2215779[mm9:13:21284551-21284573:+]0.48761200-21.90-0.7342
MIMAT0000559mmu-miR-32619720Trim27ugaccuccuucccGGGUCUcc |||||| aguauugcuauuuCCCAGAaa39192212[mm9:13:21284686-21284706:+]0.58661200-9.79-0.5031
MIMAT0004642mmu-miR-33019720Trim27cggauucuguguccGGGUCUcu |||||| aaguauugcuauuuCCCAGAaa39191212[mm9:13:21284685-21284706:+]0.58661200-12.88-0.4996
MIMAT0004896mmu-miR-590-3p19720Trim27ugaucGAAUAUGUA-UUUUAAu | |:| ||| |||||| ugauuCCUGUCCAUCAAAAUUg2176788[mm9:13:21284561-21284582:+]0.48761246-5.43-0.3763
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G037323Trim27Mus musculus1972026700765
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Trim27mmu-miR-878-5pbeg:206end:225pic:3' ACAGAACTGTAGG-TTGATCTAT 5'& || || |||||||| &5' ------GAAATAAAAACTAGAT- 3'
Trim27mmu-miR-335-3pbeg:175end:194pic:3' CCAGTCCTCGTTATTACTTTTT 5'& ||| .|||||||||. &5' ------GAGATGTAATGAAAAG 3'
Trim27mmu-miR-1931beg:157end:172pic:3' CGGTAGCGTGGTCGGGAACGTA 5'& || |||||||| &5' ---------CCTTCCCTTGCA- 3'
Trim27mmu-miR-1186bbeg:20end:43pic:3' CACCACGT--ACGGAAATTAGGGT 5'& |||| ||||| ||||||.| &5' ---GTGCTGTTGCCTGTAATCCTA 3'
Trim27mmu-miR-1224beg:147end:171pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& || ||..|.||| ||| | &5' CTGCATTTTCCCTTCCCTTGC 3'
Trim27mmu-miR-129-5pbeg:195end:219pic:3' CGTTC--GGGTCTGGCGTTTTTC 5'& || |||||| .||||| &5' GCTATTTCCCAGAAA-TAAAAA- 3'
Trim27mmu-miR-15abeg:9end:31pic:3' GTGTTTGGTAATACACGACGAT 5'& .|.|||| ||||||.|. &5' --TAGACCACAA-GTGCTGTTG 3'
Trim27mmu-miR-16beg:11end:31pic:3' GC-GGTTATAAATGCACGACGAT 5'& | ||| ||||||.|. &5' -GACCACAA-----GTGCTGTTG 3'
Trim27mmu-miR-1894-3pbeg:147end:171pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& || | ||. |||| |||||||| &5' CTGCATTTTCCCT-TCCCTTGC 3'
Trim27mmu-miR-195beg:19end:31pic:3' CGGTTATAAAGACACGACGAT 5'& ||||||.|. &5' ------------GTGCTGTTG 3'
Trim27mmu-miR-200astarbeg:162end:184pic:3' AGGT-CGTGACAGGCCATTCTAC 5'& || ||| ||.||||| &5' -CCTTGCAGATT---GTGAGATG 3'
Trim27mmu-miR-200bstarbeg:162end:183pic:3' AGGTTACGACGGGTCATTCTAC 5'& ||| ||| | ||.||||| &5' TCCCTTGCAGATT-GTGAGATG 3'
Trim27mmu-miR-2140beg:131end:152pic:3' TGGT-GGTTCTAGACGTGGA 5'& ||| ||| |.||| .||. &5' -CCATCCATGGTCTCTACT- 3'
Trim27mmu-miR-218beg:43end:55pic:3' TGTACCAATCTAGTTCGTGTT 5'& ||.|||||| &5' ------------CAGGCACAA 3'
Trim27mmu-miR-21starbeg:9end:30pic:3' CTGTCGGGTAGCTGACGACAAC 5'& .|| ||| | | |||||||| &5' --TAGACCA-CAAGTGCTGTTG 3'
Trim27mmu-miR-299starbeg:2end:18pic:3' TACATACACCCTGCCATTTGGT 5'& ||| || |||.|||| &5' ------GTGA-AC-GTAGACCA 3'
Trim27mmu-miR-30c-1starbeg:189end:210pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& |||| .|. |.|||||| &5' --AGTATT--GCTATTTCCCAG 3'
Trim27mmu-miR-30c-2starbeg:189end:210pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |||| ||. |.|||||| &5' --AGTATT--GCTATTTCCCAG 3'
Trim27mmu-miR-322beg:13end:30pic:3' AGGTTTTGTACTTAACGACGAC 5'& || ||| |||||.|| &5' -CC---ACAAG---TGCTGTTG 3'
Trim27mmu-miR-342-3pbeg:165end:182pic:3' TGCCCACG-CTAAAGACACACTCT 5'& ||| ||| ||||||| &5' -----TGCAGAT-----TGTGAGA 3'
Trim27mmu-miR-3471beg:42end:63pic:3' TTACGGAATGTCAA-CCTAGAGT 5'& || .|| ||||||. &5' ----CCAGGCACAAGGGATCTT- 3'
Trim27mmu-miR-450a-3pbeg:190end:210pic:3' TACTTACGTTTCGT--AGGGGTTA 5'& |.| || |.||||. &5' ------GTATTGCTATTTCCCAG- 3'
Trim27mmu-miR-450b-3pbeg:190end:210pic:3' TACGT-ACGTTTTACAAGGGTTA 5'& |.| ||| || ||||||. &5' --GTATTGCT--AT-TTCCCAG- 3'
Trim27mmu-miR-452beg:153end:175pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |.|| |||| .||||.|. &5' -TTTCCC-TTCCCTTGCAGAT- 3'
Trim27mmu-miR-497beg:9end:31pic:3' ATGTTTGGTGTCACACGACGAC 5'& .|.|||||| ||||||.|| &5' --TAGACCACAA-GTGCTGTTG 3'
Trim27mmu-miR-666-5pbeg:14end:36pic:3' CCGAGAGTGT---CGAC-ACGGGCGA 5'& |||| |||| ||||.|. &5' ------CACAAGTGCTGTTGCCTGT- 3'
Trim27mmu-miR-667beg:85end:95pic:3' GAACCCGACCCACCGTCCACAGT 5'& .|||||| &5' ---------------GGGTGTC- 3'
Trim27mmu-miR-680beg:115end:136pic:3' GGGGGTACAGTCG----TCTACGGG 5'& || || |||||.|| &5' -------GTGAGAGACAAGATGTCC 3'
Trim27mmu-miR-696beg:36end:54pic:3' GGGTGTCGTTCGTGTGCG 5'& ||.|| ||.||||| &5' CCTACCCCAGGCACA--- 3'
Trim27mmu-miR-758beg:2end:21pic:3' ATCACCTG-GTCCAGTGTTT 5'& |||| || .|| ||||| &5' -AGTGAACGTAGACCACAA- 3'
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Trim27RAID00048536mmu-miR-7030-5pmiRNAMIMAT0027964Trim27mRNA19720Prediction0.1828
Trim27RAID00057002mmu-miR-6914-5pmiRNAMIMAT0027728Trim27mRNA19720Prediction0.1828
Trim27RAID00111123mmu-miR-665-3pmiRNAMIMAT0003733Trim27mRNA19720CLIP-seq0.5483
Trim27RAID00193161mmu-miR-3072-3pmiRNAMIMAT0014853Trim27mRNA19720Prediction0.1828
Trim27RAID00230766mmu-miR-7684-5pmiRNAMIMAT0029890Trim27mRNA19720Prediction0.1828
Trim27RAID00253952mmu-miR-804miRNAMIMAT0004210Trim27mRNA19720CLIP-seq0.5483
Trim27RAID00259509mmu-miR-6929-5pmiRNAMIMAT0027758Trim27mRNA19720Prediction0.1828
Trim27RAID00280180mmu-miR-7019-5pmiRNAMIMAT0027942Trim27mRNA19720Prediction0.1828
Trim27RAID00322015mmu-miR-7080-5pmiRNAMIMAT0028066Trim27mRNA19720Prediction0.1828
Trim27RAID00386722mmu-miR-3081-5pmiRNAMIMAT0014870Trim27mRNA19720Prediction0.1828
Trim27RAID00719280mmu-miR-29c-3pmiRNAMIMAT0000536Trim27mRNA19720Prediction0.1828
Trim27RAID00775247mmu-miR-7061-5pmiRNAMIMAT0028026Trim27mRNA19720Prediction0.1828
Trim27RAID00811699mmu-miR-421-3pmiRNAMIMAT0004869Trim27mRNA19720Prediction0.1828
Trim27RAID00831466mmu-miR-6973b-3pmiRNAMIMAT0027909Trim27mRNA19720Prediction0.1828
Trim27RAID00881614mmu-miR-3090-3pmiRNAMIMAT0014902Trim27mRNA19720Prediction0.1828
Trim27RAID00900137mmu-miR-6908-5pmiRNAMIMAT0027716Trim27mRNA19720Prediction0.1828
Trim27RAID00915269mmu-miR-590-3pmiRNAMIMAT0004896Trim27mRNA19720Prediction0.1828
Trim27RAID00931877mmu-miR-7119-3pmiRNAMIMAT0028136Trim27mRNA19720Prediction0.1828
Trim27RAID00959187mmu-miR-1195miRNAMIMAT0005856Trim27mRNA19720CLIP-seq0.5483
Trim27RAID01046540mmu-miR-181a-5pmiRNAMIMAT0000210Trim27mRNA19720Prediction0.1828
Trim27RAID01056978mmu-miR-5121miRNAMIMAT0020629Trim27mRNA19720Prediction0.1828
Trim27RAID01092868mmu-miR-8100miRNAMIMAT0031403Trim27mRNA19720Prediction0.1828
Trim27RAID01165596mmu-miR-10a-5pmiRNAMIMAT0000648Trim27mRNA19720CLIP-seq0.5483
Trim27RAID01281879mmu-miR-690miRNAMIMAT0003469Trim27mRNA19720CLIP-seq0.5483
Trim27RAID01377041mmu-miR-1968-3pmiRNAMIMAT0017350Trim27mRNA19720Prediction0.1828
Trim27RAID01441225mmu-miR-15a-3pmiRNAMIMAT0004624Trim27mRNA19720Prediction0.1828
Trim27RAID01528729mmu-miR-29a-3pmiRNAMIMAT0000535Trim27mRNA19720Prediction0.1828
Trim27RAID01633400mmu-miR-6904-5pmiRNAMIMAT0027708Trim27mRNA19720Prediction0.1828
Trim27RAID01698818mmu-miR-330-5pmiRNAMIMAT0004642Trim27mRNA19720Prediction0.1828
Trim27RAID01914926mmu-miR-339-5pmiRNAMIMAT0000584Trim27mRNA19720CLIP-seq0.5483
Trim27RAID01917506mmu-miR-1946amiRNAMIMAT0009412Trim27mRNA19720CLIP-seq//Prediction0.6308
Trim27RAID01953378mmu-miR-29b-3pmiRNAMIMAT0000127Trim27mRNA19720Prediction0.1828
Trim27RAID01977478mmu-miR-5619-5pmiRNAMIMAT0022365Trim27mRNA19720Prediction0.1828
Trim27RAID02118613mmu-miR-10b-5pmiRNAMIMAT0000208Trim27mRNA19720CLIP-seq0.5483
Trim27RAID02215256mmu-miR-1941-3pmiRNAMIMAT0009406Trim27mRNA19720Prediction0.1828
Trim27RAID02263657mmu-miR-7076-5pmiRNAMIMAT0028058Trim27mRNA19720Prediction0.1828
Trim27RAID02338047mmu-miR-7005-3pmiRNAMIMAT0027915Trim27mRNA19720Prediction0.1828
Trim27RAID02341116mmu-miR-6948-3pmiRNAMIMAT0027797Trim27mRNA19720Prediction0.1828
Trim27RAID02376450mmu-miR-3060-3pmiRNAMIMAT0014827Trim27mRNA19720Prediction0.1828
Trim27RAID02407709mmu-miR-546miRNAMIMAT0003166Trim27mRNA19720CLIP-seq0.5483
Trim27RAID02412010mmu-miR-6907-5pmiRNAMIMAT0027714Trim27mRNA19720Prediction0.1828
Trim27RAID02494514mmu-miR-326-3pmiRNAMIMAT0000559Trim27mRNA19720Prediction0.1828
Trim27RAID02535458mmu-miR-7238-3pmiRNAMIMAT0028445Trim27mRNA19720Prediction0.1828
Trim27RAID02722241mmu-miR-7063-3pmiRNAMIMAT0028031Trim27mRNA19720Prediction0.1828
Trim27RAID02963734mmu-miR-3082-5pmiRNAMIMAT0014872Trim27mRNA19720Prediction0.1828
Trim27RAID03085024mmu-miR-3089-5pmiRNAMIMAT0014899Trim27mRNA19720CLIP-seq0.5483
Trim27RAID03549370mmu-miR-378bmiRNAMIMAT0019348Trim27mRNA19720Prediction0.1828
Trim27RAID03568839mmu-miR-184-3pmiRNAMIMAT0000213Trim27mRNA19720Prediction0.1828
Trim27RAID03610951mmu-miR-27a-3pmiRNAMIMAT0000537Trim27mRNA19720Reporter Assay//RT-PCR0.8808
Trim27RAID03628201mmu-miR-204-3pmiRNAMIMAT0017002Trim27mRNA19720Prediction0.1828
Trim27RAID03679249mmu-miR-8096miRNAMIMAT0031398Trim27mRNA19720Prediction0.1828
Trim27RAID03760927mmu-miR-7075-5pmiRNAMIMAT0028056Trim27mRNA19720Prediction0.1828
Trim27RAID03786524mmu-miR-7065-3pmiRNAMIMAT0028035Trim27mRNA19720Prediction0.1828
Trim27RAID03928631mmu-miR-7117-3pmiRNAMIMAT0028132Trim27mRNA19720Prediction0.1828
Trim27RAID03972635mmu-miR-706miRNAMIMAT0003496Trim27mRNA19720CLIP-seq0.5483
Trim27RAID04994329G730013B05RiklncRNA619312Trim27protein19720Microarray//RNA-seq0.6606