DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim35; mCG_2507 ATTTA 46-1596 1859-1863

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004524 mmu-miR-30b* 66854 Trim35 cuGCAUUUGUAGGU-GUAGGGUc | ||:: | |:| ||||||| gaCCUAGG-ACCUAGCAUCCCAa 2 21 1096 1117 [mm9:14:66929269-66929290:+] 0.5292 149 7 -16.90 -0.3130 MIMAT0004530 mmu-miR-127* 66854 Trim35 uagucucgGGAGACUC-GAAGUc |:|| ||| ||||| uguaucugCUUCAGAGACUUCAg 2 15 1947 1969 [mm9:14:66930120-66930142:+] 0.5373 122 0 -19.80 -0.1472 MIMAT0000143 mmu-miR-9* 66854 Trim35 ugAAAGCCA-AUAGAUCGA-AAUa || | || |:|:||||| ||| ugUUGCAGUGUGUUUAGCUGUUAu 2 21 1625 1648 [mm9:14:66929798-66929821:+] 0.5373 131 0 -10.94 -0.3673 MIMAT0004534 mmu-miR-145* 66854 Trim35 guucuugucAUAAA-GGUCCUUa |:||| ||||||| ugucauuuaUGUUUCCCAGGAAg 2 14 259 281 [mm9:14:66928432-66928454:+] 0.5289 152 7 -13.77 -0.1671 MIMAT0004539 mmu-miR-183* 66854 Trim35 aaUACCGGGAAGCCAUUAAGUg || :||| | ||||||| aaAUUUUCCUCC--UAAUUCA- 2 21 2070 2088 [mm9:14:66930243-66930261:+] 0.4946 149 7 -7.61 -0.4637 MIMAT0004541 mmu-miR-188-3p 66854 Trim35 acguUUGGGACGUACACCCUc :||:|| : ||||||| ccuuGACUCUCUCUGUGGGAa 2 18 467 487 [mm9:14:66928640-66928660:+] 0.4899 157 7 -17.04 -0.1424 MIMAT0000218 mmu-miR-24-1* 66854 Trim35 ugacuauaGUCGAGUCAUCC-GUg || | ||||||| || ggcucuccCACCCCAGUAGGACAa 2 16 352 375 [mm9:14:66928525-66928548:+] 0.4947 123 0 -16.16 -0.1102 MIMAT0004545 mmu-miR-200b* 66854 Trim35 agGUUACGACGGGU--CAUUCUAc | :| || |||| ||||||| auCUGUCCUUCCCAUUGUAAGAUu 2 21 1547 1570 [mm9:14:66929720-66929743:+] 0.5373 159 7 -15.16 -0.3622 MIMAT0004547 mmu-miR-203* 66854 Trim35 acAACU--UGACA--GU-UCUUGGUGa |||: :|||| || |||||||: ccUUGGCUGCUGUAACAGAGAACCAUa 2 21 181 207 [mm9:14:66927094-66927120:+] 0.5104 141 0 -18.02 -0.1314 MIMAT0004573 mmu-miR-293* 66854 Trim35 guuuuacagugUGUCAAACUCa |::||||||| gaagccccaggAUGGUUUGAGa 2 12 305 326 [mm9:14:66928478-66928499:+] 0.5005 147 7 -12.70 -0.1311 MIMAT0000376 mmu-miR-298 66854 Trim35 cccuucuuguCGGGAGGAGACGg |: : ||||||| uuuccuuuauGUGUCCCUCUGCc 2 14 964 986 [mm9:14:66929137-66929159:+] 0.5292 141 7 -20.49 -0.2920 MIMAT0000377 mmu-miR-299* 66854 Trim35 uaCAUA-CACCCU-GC-CAUUUGGu ||:| ||||| :| ||||||| agGUGUCCUGGGAGUGUGUAAACCg 2 21 124 148 [mm9:14:66927037-66927061:+] 0.5104 157 7 -23.73 -0.2438 MIMAT0004580 mmu-miR-34c* 66854 Trim35 ggAC-CGACAC----ACCAAUC-ACUAa || |||||| | ||||| |||| aaUGUGCUGUGCAACUUGUUAGUUGAUg 2 21 1586 1613 [mm9:14:66929759-66929786:+] 0.5373 126 0 -17.40 -0.2371 MIMAT0004617 mmu-miR-148a* 66854 Trim35 ucagccucACAGAGUCU-UGAAa || :||||| |||| uguguaucUGCUUCAGAGACUUc 2 15 1945 1967 [mm9:14:66930118-66930140:+] 0.5373 122 0 -11.19 -0.1512 MIMAT0004619 mmu-miR-200a* 66854 Trim35 agGUCGUGACAGG--CCAUUCUAc | |: || || ||||||| auCUGUCCUUCCCAUUGUAAGAUu 2 21 1547 1570 [mm9:14:66929720-66929743:+] 0.5373 143 7 -14.21 -0.3593 MIMAT0005440 mmu-miR-24-2* 66854 Trim35 ugACAAAGUCGAGUCAUCC-GUg | | || | ||||||| || gcUCUCCCACCCCAGUAGGACAa 2 21 353 375 [mm9:14:66928526-66928548:+] 0.4947 124 0 -14.57 -0.1102 MIMAT0004630 mmu-miR-26b* 66854 Trim35 cucGGUUCAUUACCUCU-UGUCc |:|| |:|||||| |||| uauCUAACAAGUGGAGACACAGa 2 20 1211 1233 [mm9:14:66929384-66929406:+] 0.5292 135 0 -17.98 -0.3259 MIMAT0004633 mmu-miR-27a* 66854 Trim35 acgAGUGUUCGU-CGAUUCGGGa | |:|| :| :||||||| auaUGAUAAUUAUUUUAAGCCCu 2 20 1740 1762 [mm9:14:66929913-66929935:+] 0.5373 150 7 -14.85 -0.6946 MIMAT0000556 mmu-miR-324-3p 66854 Trim35 ucGUCGUGGACCCCGUCACc ||| :||| ||||||| ucCAGGGCCUUUGGCAGUGg 2 19 552 571 [mm9:14:66928725-66928744:+] 0.5182 162 7 -29.68 -0.1196 MIMAT0000569 mmu-miR-330* 66854 Trim35 agagacguccGGGACACGAAACg ||: ||||||| ugguuggucaCCUCAUGCUUUGa 2 14 706 728 [mm9:14:66928879-66928901:+] 0.5056 145 7 -15.67 -0.4146 MIMAT0004653 mmu-miR-342-5p 66854 Trim35 gaGUUAGUGUCUAUCGUGGGGa ||||: ||| ||||||| ccCAAUUUCAGCCUGCACCCCu 2 21 1113 1134 [mm9:14:66929286-66929307:+] 0.5292 164 7 -24.62 -0.4723 MIMAT0005444 mmu-miR-218-2* 66854 Trim35 gcgCCACGA-ACUG--UCUUGGUAc | |||| | || |||||||| uugGCUGCUGUAACAGAGAACCAUa 2 20 183 207 [mm9:14:66927096-66927120:+] 0.5104 157 7 -19.49 -1.1809 MIMAT0004691 mmu-miR-382* 66854 Trim35 uuuuuCACAACAGGCACUUACu ||| || | ||||||| ccaucGUG-UG-CAGUGAAUGu 2 18 1571 1590 [mm9:14:66929744-66929763:+] 0.5373 149 7 -14.04 -0.1154 MIMAT0002104 mmu-miR-463* 66854 Trim35 uaCUACCUGUUGU-UUA-AUCCAu ||||| || :| ||| ||||| agGAUGG-CAUUAUAAUGUAGGUg 2 21 175 197 [mm9:14:66928348-66928370:+] 0.5287 129 0 -16.83 -0.5978 MIMAT0002109 mmu-miR-468 66854 Trim35 guCUGUGUGCGUGUAGUCAGUAu |:| | :|: :| ||||||| uaGGCUC-UGUCUA-CAGUCAUg 2 22 97 117 [mm9:14:66928270-66928290:+] 0.5611 145 7 -18.12 -0.1305 MIMAT0002109 mmu-miR-468 66854 Trim35 gucugugugcguguAGUCAGUAu |||||||| cugccuuuucuuucUCAGUCAUg 2 10 982 1004 [mm9:14:66929155-66929177:+] 0.5292 145 7 -12.25 -0.2210 MIMAT0002109 mmu-miR-468 66854 Trim35 gucuGUGUGCGUGUAGUCAGUAu ||:| |: :| ||||||| ucuuCAUAAGUCUAACAGUCAUg 2 20 13 35 [mm9:14:66926926-66926948:+] 0.5142 159 7 -15.40 -0.4824 MIMAT0003167 mmu-miR-540-3p 66854 Trim35 gguCCUAGCUGGAGACUGGa ||:|:| ||||||| auuGGGUUG---UCUGACCu 2 18 1981 1997 [mm9:14:66930154-66930170:+] 0.5373 145 7 -20.09 -0.2798 MIMAT0004788 mmu-miR-20b* 66854 Trim35 gaucuucacGAGUGUG-ACGUCa || |||| ||||| ugcccacccCUGACACAUGCAGc 2 14 3 25 [mm9:14:66928176-66928198:+] 0.2285 121 0 -15.45 -0.1060 MIMAT0003373 mmu-miR-302b* 66854 Trim35 ucUUUCGUA-AGGGUACAAUUUCa || |:|| | :: ||||||| gcAAUGUAUGUGUUUGGUUAAAGa 2 22 1337 1360 [mm9:14:66929510-66929533:+] 0.5014 152 7 -8.54 -0.4364 MIMAT0003375 mmu-miR-302c* 66854 Trim35 cgUCCAU-UGGGGUACAAUUUCg | ||| :: :: ||||||| caAUGUAUGUGUUUGGUUAAAGa 2 21 1338 1360 [mm9:14:66929511-66929533:+] 0.5014 143 7 -9.19 -0.4397 MIMAT0003731 mmu-miR-671-5p 66854 Trim35 gaGGUCGG---GGAGGU-CCCGAAGGa |::||| :||:|| ||||||| ugCUGGCCUUGUCUUCAUUGGCUUCCa 2 22 898 924 [mm9:14:66929071-66929097:+] 0.5292 155 7 -27.29 -0.5043 MIMAT0003734 mmu-miR-667 66854 Trim35 gaacccgacccaccGUCCACAGu :||||||| uuacuugaucaucuUAGGUGUCc 2 10 109 131 [mm9:14:66927022-66927044:+] 0.5104 141 7 -14.78 -0.5017 MIMAT0003736 mmu-miR-670 66854 Trim35 aaguggUGUAUGUGAGUC-CCUa :||| |||||| ||| gaagugGCAUCAACUCAGUGGAa 2 17 84 106 [mm9:14:66926997-66927019:+] 0.5104 124 0 -17.56 -0.8423 MIMAT0003897 mmu-miR-759 66854 Trim35 caguuuuaACAAACGUG-AGACg ||||| ||| |||| uaaaccugUGUUUCCACAUCUGu 2 15 769 791 [mm9:14:66928942-66928964:+] 0.5056 126 0 -13.29 -0.1503 MIMAT0003740 mmu-miR-674 66854 Trim35 auguggugagGGUAGAGUCACg :|| ||||||| agaaguggcaUCAACUCAGUGg 2 13 83 104 [mm9:14:66926996-66927017:+] 0.5104 148 7 -16.16 -0.7789 MIMAT0003449 mmu-miR-488* 66854 Trim35 aacUCUCACGAU-AAU-AGACCc ||:|||: | || ||||| uguAGGGUGUGAGGUACUCUGGa 2 19 491 513 [mm9:14:66928664-66928686:+] 0.5040 121 0 -16.51 -0.3177 MIMAT0003457 mmu-miR-680 66854 Trim35 ggggGUACAGUCGUCUACGGg | | |||| ||||||| ccagCCUAUCAGGAGAUGCCu 2 18 223 243 [mm9:14:66928396-66928416:+] 0.5289 161 7 -24.39 -0.1309 MIMAT0003469 mmu-miR-690 66854 Trim35 aaACCAACACUCGGAUC-GGAAa || || ||| |||| |||| ugUGAUU-UGACACUAGUCCUUg 2 21 789 810 [mm9:14:66928962-66928983:+] 0.4906 126 0 -12.18 -0.1999 MIMAT0003472 mmu-miR-693-5p 66854 Trim35 cuuUUGAAAGCCUACACCGAc || |||:| ||||||| ugcAAGUUUUG--UGUGGCUg 2 19 1674 1692 [mm9:14:66929847-66929865:+] 0.5373 155 7 -18.03 -0.1989 MIMAT0003474 mmu-miR-694 66854 Trim35 gaaguccguugUAAAAGUc ||||||| cuuucuuuuuaAUUUUCAc 2 9 1405 1423 [mm9:14:66929578-66929596:+] 0.5253 140 7 -5.82 -0.8406 MIMAT0003487 mmu-miR-697 66854 Trim35 agAGGUGUCCUGGUCCU-ACAa |:| :|||| ||||| ||| ggUUCCUAGGA-CAGGAUUGUc 2 20 447 467 [mm9:14:66928620-66928640:+] 0.4899 129 0 -22.03 -0.1471 MIMAT0003487 mmu-miR-697 66854 Trim35 agAGGUGUCC-UGGU-CCUACAa | | ::|| |||| |||||| gaUGCUUGGGCACCACGGAUGUg 2 20 1299 1321 [mm9:14:66929472-66929494:+] 0.5014 126 6 -18.61 -0.1642 MIMAT0003493 mmu-miR-703 66854 Trim35 aaGAAAGGAAGACUUCCAAAa ||||: || ||||||||| acCUUUUAUUAUGAAGGUUUa 2 20 1994 2014 [mm9:14:66930167-66930187:+] 0.5373 175 7 -15.57 -0.4696 MIMAT0003495 mmu-miR-705 66854 Trim35 acGGGU-GGGGUGGAGGGUGg |||| :::| ||||||| guCCCAUUUUCUACUCCCACc 2 19 1796 1816 [mm9:14:66929969-66929989:+] 0.5373 153 7 -28.90 -0.1886 MIMAT0003500 mmu-miR-710 66854 Trim35 gaguuGAGAGGGGUUCUGAACc | :| | :|||||||| ccccuCAUUACAUAAGACUUGu 2 18 1130 1151 [mm9:14:66929303-66929324:+] 0.5292 153 7 -15.94 -0.8088 MIMAT0003506 mmu-miR-715 66854 Trim35 gugcgcccccacaCGUGCCUc ||||||| acucagucuuucgGCACGGAa 2 9 678 698 [mm9:14:66928851-66928871:+] 0.5056 140 7 -14.18 -0.1643 MIMAT0004838 mmu-miR-742* 66854 Trim35 acUAAUCGUUGGUACAC-UCAu ||| | |:|:|||| ||| agAUU--CCAUCGUGUGCAGUg 2 20 1566 1585 [mm9:14:66929739-66929758:+] 0.5373 120 0 -16.91 -0.2057 MIMAT0004237 mmu-miR-742 66854 Trim35 aaaUGGGUCGUAC-CACCGAAAg ||: |||||| ||||||| cucACUGAGCAUGCAUGGCUUUa 2 20 393 415 [mm9:14:66928566-66928588:+] 0.4899 166 7 -21.46 -0.1757 MIMAT0004844 mmu-miR-880 66854 Trim35 agaugagucucucCUACCUCAu |||||||| agucaugccuguaGAUGGAGUc 2 10 998 1019 [mm9:14:66929171-66929192:+] 0.5292 145 7 -14.38 -0.1880 MIMAT0004845 mmu-miR-881* 66854 Trim35 ucuACACUGACAAUA-GAGAGAc ||| :|| | | |||||| gccUGUCCUUGCUCUGCUCUCUg 2 20 928 950 [mm9:14:66929101-66929123:+] 0.5292 123 6 -15.88 -0.1710 MIMAT0004849 mmu-miR-883a-3p 66854 Trim35 uaugACUCUCGACA-ACG-UCAAu ||| | :||| ||| |||| gcuaUGAAAUUUGUGUGCAAGUUu 2 19 1659 1682 [mm9:14:66929832-66929855:+] 0.5373 125 0 -10.32 -0.2159 MIMAT0004850 mmu-miR-883b-5p 66854 Trim35 acuGAC-GAUGGGUAAGAGUCAu ||| || ::| |||||||| ccuCUGCCUUUUCUUUCUCAGUc 2 20 979 1001 [mm9:14:66929152-66929174:+] 0.5292 162 7 -18.75 -0.4135 MIMAT0004851 mmu-miR-883b-3p 66854 Trim35 uaugACUCUCUACA-ACG-UCAAu ||| | ||| ||| |||| gcuaUGAAAUUUGUGUGCAAGUUu 2 19 1659 1682 [mm9:14:66929832-66929855:+] 0.5373 121 0 -9.09 -0.2159 MIMAT0004856 mmu-miR-105 66854 Trim35 ugGUGUUCGUAG-ACUCGUGAACc :| | | :|| || ||||||| ucUAAAUGGGUCAUGUGCACUUGu 2 22 1183 1206 [mm9:14:66929356-66929379:+] 0.5292 156 7 -17.85 -0.1763 MIMAT0004890 mmu-miR-509-5p 66854 Trim35 uacuaacgguguaaGACCUCAu ||||||| uuaagcugaggaagCUGGAGUa 2 9 1861 1882 [mm9:14:66930034-66930055:+] 0.5373 140 7 -16.43 -0.2958 MIMAT0004935 mmu-miR-872* 66854 Trim35 ucCUCCGAU-GACGUUA-UCAAGu | | :|| |||: || ||||| guGUGUUUAGCUGUUAUGAGUUCu 2 21 1632 1655 [mm9:14:66929805-66929828:+] 0.5373 123 0 -10.16 -0.2597 MIMAT0005831 mmu-miR-669k 66854 Trim35 aacGUACGCACAUAUACGUAu || |: ||| ||||||| uuaCAAGUUUGU-UAUGCAUu 2 19 2012 2031 [mm9:14:66930185-66930204:+] 0.5373 156 7 -11.72 -0.5842 MIMAT0005834 mmu-miR-466i 66854 Trim35 aucacacaUACACAC-ACACAUa |||| || |||||| cuuuccucAUGUUUGCUGUGUAu 2 15 1929 1951 [mm9:14:66930102-66930124:+] 0.5373 126 6 -12.40 -0.1477 MIMAT0005834 mmu-miR-466i 66854 Trim35 aucaCACA-UACACACACACAUa |||| || | ||||||| uuagGUGUCCUGGGAGUGUGUAa 2 19 122 144 [mm9:14:66927035-66927057:+] 0.5104 157 7 -15.91 -0.7118 MIMAT0005842 mmu-miR-669h-3p 66854 Trim35 acACGUACACACAUAUACGUAu | || || ||| ||||||| uuUACAAGUUUGU-UAUGCAUu 2 21 2011 2031 [mm9:14:66930184-66930204:+] 0.5373 162 7 -12.51 -0.5770 MIMAT0005849 mmu-miR-1191 66854 Trim35 aucccGAUGUAUCAUUCUGAc :|||| ||||||| ccucaUUACA---UAAGACUu 2 17 1132 1149 [mm9:14:66929305-66929322:+] 0.5292 144 7 -10.49 -0.4551 MIMAT0005858 mmu-miR-1197 66854 Trim35 ucuUCAUCUGGUA-----CACAGGAu | | ||:||| ||||||| guuACUUGAUCAUCUUAGGUGUCCUg 2 19 108 133 [mm9:14:66927021-66927046:+] 0.5104 145 7 -17.63 -0.3319 MIMAT0007872 mmu-miR-1906 66854 Trim35 ucggGACGG-AGUC-CGACGACGu |||:: | || ||||||| uuagCUGUUAUGAGUUCUGCUGCu 2 19 1638 1661 [mm9:14:66929811-66929834:+] 0.5373 148 7 -18.81 -0.7551 MIMAT0007873 mmu-miR-1896 66854 Trim35 gaggaGUGGGUGGUAGUCUCUc :|:|::|: ||||||| cugugUAUCUGCU-UCAGAGAc 2 18 1944 1964 [mm9:14:66930117-66930137:+] 0.5373 151 7 -17.33 -0.1692 MIMAT0007875 mmu-miR-1898 66854 Trim35 cuAGGGGACACUUGGAAC-UGGa |:||: ||| | |||| ||| aaUUCCUAGUGUAACUUGUACCu 2 21 1523 1545 [mm9:14:66929696-66929718:+] 0.5373 132 0 -21.43 -0.3042 MIMAT0007876 mmu-miR-1907 66854 Trim35 uggaggucuagGAGACGACGAg :||||||||| gcuguuaugagUUCUGCUGCUa 2 12 1641 1662 [mm9:14:66929814-66929835:+] 0.5373 151 7 -20.74 -0.5419 MIMAT0007878 mmu-miR-1894-3p 66854 Trim35 gaGGGAAGUGGGAGAGGGA-ACg :||||:| : | ||||| || uuUCCUUUA-UGUGUCCCUCUGc 2 21 964 985 [mm9:14:66929137-66929158:+] 0.5292 122 0 -22.99 -0.5244 MIMAT0009399 mmu-miR-1935 66854 Trim35 ucucUAGGCGGUCGGAGACGGa || :|:| |||||||| cuuuAUGUGUC--CCUCUGCCu 2 19 968 987 [mm9:14:66929141-66929160:+] 0.5292 151 7 -22.51 -0.3113 MIMAT0009399 mmu-miR-1935 66854 Trim35 ucucuaggcggucGGAGACGGa :||||||| uuguaacgaauucUCUCUGCCc 2 10 1837 1858 [mm9:14:66930010-66930031:+] 0.5373 141 7 -17.25 -0.2584 MIMAT0009399 mmu-miR-1935 66854 Trim35 ucUCUAGGCGGUCGGA-GACGGa |||||| | :|| ||||| aaAGAUCCAACUCUCUCCUGCCa 2 21 39 61 [mm9:14:66926952-66926974:+] 0.5125 128 0 -22.34 -0.4860 MIMAT0009403 mmu-miR-1939 66854 Trim35 cacGUAA-CCGUCCCUUAGCu | || |||| ||||||| aguCUUUCGGCACGGAAUCGa 2 18 682 702 [mm9:14:66928855-66928875:+] 0.5056 160 7 -20.02 -0.1179 MIMAT0009404 mmu-miR-1940 66854 Trim35 uugacgagguggaagagucAGGAGGua |||||| augaaucacauaaaaauuuUCCUCCua 3 9 2057 2083 [mm9:14:66930230-66930256:+] 0.4946 120 0 -15.41 -0.1133 MIMAT0009404 mmu-miR-1940 66854 Trim35 uugaCGAGGUGGAAGAGUCAGGA-GGUa | |||| | |||| |||| ||| gaaaGAUCCAAC-UCUC--UCCUGCCAg 2 24 38 62 [mm9:14:66926951-66926975:+] 0.5125 126 0 -18.14 -0.4452 MIMAT0009407 mmu-miR-1942 66854 Trim35 guUGGUC-UACUUCUGUAGACu ||| | :| ||||||| aaACCUGUGUUUCCACAUCUGu 2 20 770 791 [mm9:14:66928943-66928964:+] 0.5056 142 7 -15.42 -0.1221 MIMAT0009416 mmu-miR-1949 66854 Trim35 uuGAUACGACUGUAG-GACCAUAUc ||:| || : ||: |||||||| uuCUGUUCUUGGAUUGCUGGUAUAc 2 23 138 162 [mm9:14:66928311-66928335:+] 0.5681 165 7 -16.77 -0.1600 MIMAT0009421 mmu-miR-669o 66854 Trim35 uguAUUUGUACGUGUGUGUUGAu | :|| | | | ||||||| aauUUGACUUAC-CCCACAACUg 2 21 1470 1491 [mm9:14:66929643-66929664:+] 0.5253 150 7 -12.11 -0.1744 MIMAT0009427 mmu-miR-669n 66854 Trim35 ugUGUGUAGGUGUGUGUUUa :| : | :| ||||||| gaGCUUUUGUAAACACAAAu 2 19 1506 1525 [mm9:14:66929679-66929698:+] 0.5313 146 7 -8.70 -0.6276 MIMAT0009431 mmu-miR-1958 66854 Trim35 ugaAUGACGAAGGU---GAAAGGAu |:| | ||||| ||||||| cucUGCAGAUUCCACCCCUUUCCUu 2 20 946 970 [mm9:14:66929119-66929143:+] 0.5292 158 7 -18.92 -0.1980 MIMAT0009431 mmu-miR-1958 66854 Trim35 ugaaugacgaagGU-GAAAGGAu || ||||||| auggcuggggagCAUCUUUCCUc 2 11 1914 1936 [mm9:14:66930087-66930109:+] 0.5373 141 7 -13.01 -0.1398 MIMAT0009435 mmu-miR-1962 66854 Trim35 uaCACAGGGUC---AC-GGUCGGAGa ||| :: || || |||||||| caGUGGUUAAGGACUGACCAGCCUCa 2 21 566 591 [mm9:14:66928739-66928764:+] 0.5182 150 7 -20.79 -0.1543 MIMAT0009441 mmu-miR-1968 66854 Trim35 ucaGGUGGUAGG--AAUUGUC-GACGu |:| ||||| | ||| |||| gacCUAGCAUCCCAAUUUCAGCCUGCa 2 22 1103 1129 [mm9:14:66929276-66929302:+] 0.5292 120 0 -21.59 -0.2693 MIMAT0009457 mmu-miR-1839-3p 66854 Trim35 cgacaaCCAUCUA-UUCAUCCAGa || || | :|||||||| agcugaGGAAGCUGGAGUAGGUCu 2 18 1864 1887 [mm9:14:66930037-66930060:+] 0.5373 156 7 -24.95 -0.2221 MIMAT0011210 mmu-miR-2134 66854 Trim35 cguggGGCAAAGGGUUCUg || |||||||| acuaaCCAAAUCCCAAGAg 2 15 1029 1047 [mm9:14:66929202-66929220:+] 0.5292 146 7 -16.11 -0.6611 MIMAT0011216 mmu-miR-2140 66854 Trim35 uggugguucuaGACGUGGa ||||||| ccaauuucagcCUGCACCc 2 9 1114 1132 [mm9:14:66929287-66929305:+] 0.5292 140 7 -16.20 -0.1578 MIMAT0012772 mmu-miR-599 66854 Trim35 caaacuauuuGACUGUGUu |||||||| cugcccacccCUGACACAu 2 10 2 20 [mm9:14:66928175-66928193:+] 0.2285 145 7 -12.09 -0.1079 MIMAT0015642 mmu-miR-3471 66854 Trim35 uuACGGAAUGUCAAC-CUAGAGu |||| |::||||| |||||| uuUGCCCUGUAGUUGCGAUCUCu 2 21 1890 1912 [mm9:14:66930063-66930085:+] 0.5373 148 6 -24.61 -0.1009 MIMAT0015645 mmu-miR-3473 66854 Trim35 ccgaCUCGGU--AGAGAGGu || ||| ||||||| gaaaGAUCCAACUCUCUCCu 2 15 38 57 [mm9:14:66926951-66926970:+] 0.5125 149 7 -16.12 -0.3700 MIMAT0015646 mmu-miR-3474 66854 Trim35 cuUAGGUGCAGAGGAGGGUCCc ||::|:|| :||||||| ucAUUUAUGU---UUCCCAGGa 2 21 261 279 [mm9:14:66928434-66928452:+] 0.5289 152 7 -20.90 -0.7721 MIMAT0000124 mmu-miR-15b 66854 Trim35 acauuUGGUACU--ACACGACGAu :::|||| | ||||||| uagcuGUUAUGAGUUCUGCUGCUa 2 18 1639 1662 [mm9:14:66929812-66929835:+] 0.5373 152 7 -17.65 -0.5383 MIMAT0004528 mmu-miR-125a-3p 66854 Trim35 ccGAGGGUUCUUGGAGUGGAca ||::: | | ::|||||| uuCUUUUUA-AUUUUCACCUua 3 21 1407 1427 [mm9:14:66929580-66929600:+] 0.5253 130 0 -13.02 -0.1059 MIMAT0000144 mmu-miR-132 66854 Trim35 gcugguaccgacaucUGACAAu |||||| aaacucucugaaauuACUGUUa 2 8 1360 1381 [mm9:14:66929533-66929554:+] 0.5134 120 6 -10.07 -0.1817 MIMAT0000156 mmu-miR-144 66854 Trim35 ucauguaguagAUAUGACAu |||||||| uggauugcuggUAUACUGUu 2 10 147 166 [mm9:14:66928320-66928339:+] 0.5752 145 7 -9.15 -0.6092 MIMAT0000211 mmu-miR-182 66854 Trim35 gccACACUCAAGAUGGUAACGGUUu || ||| |||| |||||||| agaUG-GAG-UCUA--AUUGCCAAc 2 23 1010 1030 [mm9:14:66929183-66929203:+] 0.5292 159 7 -16.95 -0.3957 MIMAT0000212 mmu-miR-183 66854 Trim35 ucacuuaAGAU-GGUCACGGUAu || | ::|||||||| accagccUCAAGUUAGUGCCAUa 2 16 582 604 [mm9:14:66928755-66928777:+] 0.5119 150 7 -16.62 -0.4629 MIMAT0000214 mmu-miR-185 66854 Trim35 aguccUUGACGGAAAGAGAGGu |: | | ||||||| augaaAGAUCCAACUCUCUCCu 2 18 36 57 [mm9:14:66926949-66926970:+] 0.5125 141 7 -13.94 -0.3700 MIMAT0000215 mmu-miR-186 66854 Trim35 ucggguuuuccucuuAAGAAAc |||||| guuuuuaaaaguuuuUUCUUUc 2 8 1388 1409 [mm9:14:66929561-66929582:+] 0.5253 120 6 -8.13 -0.1244 MIMAT0000220 mmu-miR-190 66854 Trim35 uggauUAUAUAGUUUG-UAUAGu ||: | || || ||||| gacacAUGCAGCAUACUAUAUCc 2 18 14 36 [mm9:14:66928187-66928209:+] 0.4625 121 0 -6.07 -0.2299 MIMAT0000224 mmu-miR-194 66854 Trim35 agguguACCUCAACGACAAUGu || | || ||||||: acucucUGAAAUUACUGUUAUa 2 17 1362 1383 [mm9:14:66929535-66929556:+] 0.5134 140 0 -11.45 -0.1337 MIMAT0000225 mmu-miR-195 66854 Trim35 cgguUA-UAAAGACACGACGAu || | ||| ||||||| uguuAUGAGUUC--UGCUGCUa 2 18 1643 1662 [mm9:14:66929816-66929835:+] 0.5373 145 7 -14.98 -0.5076 MIMAT0000238 mmu-miR-205 66854 Trim35 guCUGAGGCCACCUUACUUCCu ||| |: | ||||||| cuGAC-CUUUUAUUAUGAAGGu 2 21 1991 2011 [mm9:14:66930164-66930184:+] 0.5373 142 7 -12.79 -0.8079 MIMAT0000366 mmu-miR-290-5p 66854 Trim35 uuucaCGGGG--GUAUCAAACUCa ||||| ||:||||||| gggaaGCCCCAGGAUGGUUUGAGa 2 18 303 326 [mm9:14:66928476-66928499:+] 0.5005 160 7 -24.74 -0.1248 MIMAT0000369 mmu-miR-292-5p 66854 Trim35 guUUUC-UCGGGG----GUCAAACUCa |::| |||||| ::||||||| acAGGGAAGCCCCAGGAUGGUUUGAGa 2 21 300 326 [mm9:14:66928473-66928499:+] 0.5005 154 7 -28.30 -0.1298 MIMAT0000387 mmu-miR-130b 66854 Trim35 uaCGGGA---AAGUAGUA-ACGUGAc ||:|| | :|||| |||||| ugGCUCUAAAUGGGUCAUGUGCACUu 2 21 1179 1204 [mm9:14:66929352-66929377:+] 0.5292 123 6 -17.35 -0.2536 MIMAT0000526 mmu-miR-15a 66854 Trim35 guguUUGGUAAUAC-----ACGACGAu |:|::||||| ||||||| guuuAGCUGUUAUGAGUUCUGCUGCUa 2 19 1636 1662 [mm9:14:66929809-66929835:+] 0.5373 153 7 -19.19 -0.5419 MIMAT0000527 mmu-miR-16 66854 Trim35 gcGGUUAUAAAU-GCACGACGAu |:: ||| : : ||||||| agCUGUUAUGAGUUCUGCUGCUa 2 21 1640 1662 [mm9:14:66929813-66929835:+] 0.5373 143 7 -15.90 -0.5348 MIMAT0000528 mmu-miR-18a 66854 Trim35 gaUAGACGUGAUCUACG-UGGAAu :||| || | |||| ||||| cuGUCUACAGU-CAUGCUACCUUc 2 22 103 125 [mm9:14:66928276-66928298:+] 0.5611 127 0 -17.41 -0.1447 MIMAT0000528 mmu-miR-18a 66854 Trim35 gauagacgugaucuacGUGGAAu |||||| cuuucuuuuuaauuuuCACCUUa 2 8 1405 1427 [mm9:14:66929578-66929600:+] 0.5253 120 6 -11.12 -0.1548 MIMAT0000533 mmu-miR-26a 66854 Trim35 ucggauaggACCU---AAUGAACUu |||| |||||||| ucaacucagUGGAAUGUUACUUGAu 2 14 93 117 [mm9:14:66927006-66927030:+] 0.5104 148 7 -12.89 -0.6018 MIMAT0000534 mmu-miR-26b 66854 Trim35 uggauaggaCUU--AAUGAACUu ||| |||||||| aacucagugGAAUGUUACUUGAu 2 13 95 117 [mm9:14:66927008-66927030:+] 0.5104 147 7 -10.47 -0.6018 MIMAT0000548 mmu-miR-322 66854 Trim35 agguuuuGUACUUA--ACGACGAc :||||:| ||||||| uagcuguUAUGAGUUCUGCUGCUa 2 16 1639 1662 [mm9:14:66929812-66929835:+] 0.5373 154 7 -18.72 -0.5383 MIMAT0000659 mmu-miR-212 66854 Trim35 accggcacugaccucUGACAAu |||||| aaacucucugaaauuACUGUUa 2 8 1360 1381 [mm9:14:66929533-66929554:+] 0.5134 120 6 -9.76 -0.1800 MIMAT0000665 mmu-miR-223 66854 Trim35 accccauaaacuGU-UUGACUGu || ||||||| uuugacuuacccCACAACUGACa 2 11 1472 1494 [mm9:14:66929645-66929667:+] 0.5253 141 7 -13.79 -0.4936 MIMAT0000666 mmu-miR-320 66854 Trim35 agcgggagAGUUGGGU-CGAAAa ||| |:|| ||||| cugguuggUCACCUCAUGCUUUg 2 15 705 727 [mm9:14:66928878-66928900:+] 0.5056 122 0 -14.16 -0.1259 MIMAT0000673 mmu-miR-181b 66854 Trim35 uggGUGGCUGUCGUUA-CUUACAa ||:| || ||:| |||||| uggCAUCAAC-UCAGUGGAAUGUu 2 21 88 110 [mm9:14:66927001-66927023:+] 0.5104 126 6 -16.47 -0.6279 MIMAT0000679 mmu-miR-217 66854 Trim35 aggucagUCAAGGAC-UACGUCAu || || | ||||||| aggccaaAGCACCAGAAUGCAGUg 2 17 606 629 [mm9:14:66928779-66928802:+] 0.5056 147 7 -18.16 -0.1059 MIMAT0003128 mmu-miR-485 66854 Trim35 cuUAAGUAGUG-CCGGUCGGAGa :|| | || | |||||||| ugGUUAAGGACUGACCAGCCUCa 2 21 569 591 [mm9:14:66928742-66928764:+] 0.5182 155 7 -17.11 -0.1513 MIMAT0003168 mmu-miR-543 66854 Trim35 uucUUCACGUGGCGCUUACAAa || | || :| ||||||| aucAACU-CAGUG-GAAUGUUa 2 20 92 111 [mm9:14:66927005-66927024:+] 0.5104 147 7 -11.53 -0.5481 MIMAT0003182 mmu-miR-494 66854 Trim35 cuccAAAGGGCACAUACAAAGu ||| :| | |||||||| ucuaUUUGUCAUUUAUGUUUCc 2 19 253 274 [mm9:14:66928426-66928447:+] 0.5289 162 7 -9.46 -0.3281 MIMAT0003182 mmu-miR-494 66854 Trim35 cuccaaagggcacaUACAAAGu ||||||| accccacaacugacAUGUUUCu 2 9 1480 1501 [mm9:14:66929653-66929674:+] 0.5253 140 7 -9.98 -0.3501 MIMAT0003453 mmu-miR-497 66854 Trim35 auguuuggugUC-ACACGACGAc || | ||||||| agcuguuaugAGUUCUGCUGCUa 2 13 1640 1662 [mm9:14:66929813-66929835:+] 0.5373 143 7 -12.74 -0.5454 MIMAT0003456 mmu-miR-495 66854 Trim35 uucUUCACGUGGUACAAACAAa |:|| :| || ||||||| ugaAGGUUUA-CAAGUUUGUUa 2 20 2005 2025 [mm9:14:66930178-66930198:+] 0.5373 157 7 -12.67 -0.8923 MIMAT0004324 mmu-miR-181d 66854 Trim35 uggguGGCUGUUGUUACU-UACAa || ||||| ||| |||| cuuacCCCACAAC--UGACAUGUu 2 19 1477 1498 [mm9:14:66929650-66929671:+] 0.5253 123 0 -16.00 -0.4339 MIMAT0004324 mmu-miR-181d 66854 Trim35 uggGUGGCUGUUGUUA-CUUACAa ||:| || ||:| |||||| uggCAUCAAC-UCAGUGGAAUGUu 2 21 88 110 [mm9:14:66927001-66927023:+] 0.5104 126 6 -16.98 -0.6279 MIMAT0004847 mmu-miR-882 66854 Trim35 ugaUUACGCGAUUGAGAGAGGa || | | |||||||||| augAAAGAUCCAACUCUCUCCu 2 20 36 57 [mm9:14:66926949-66926970:+] 0.5125 163 7 -19.89 -0.3700 MIMAT0004858 mmu-miR-18b 66854 Trim35 gauugucgugaucuacGUGGAAu |||||| cuuucuuuuuaauuuuCACCUUa 2 8 1405 1427 [mm9:14:66929578-66929600:+] 0.5253 120 6 -12.04 -0.1548 MIMAT0005850 mmu-miR-1192 66854 Trim35 uuaaaCCAGACAAACAAACAAa |||:| ||||||| augaaGGUUUACAAGUUUGUUa 2 18 2004 2025 [mm9:14:66930177-66930198:+] 0.5373 149 7 -11.22 -0.8890

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038728 Trim35 Mus musculus 66854

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim35 mmu-miR-223 beg:1482 end:1495 pic:3' ACCCCATAAACTGTTTGACTGT 5'& || |||||||| &5' -----------AC-AACTGACA 3' Trim35 mmu-miR-703 beg:1995 end:2014 pic:3' AAGAAAGGAAGACTTCCAAAA 5'& ||||. ||||||||| &5' --CTTTTATTATGAAGGTTT- 3' Trim35 mmu-miR-20astar beg:611 end:629 pic:3' GAAATTCACGAGCA-TTACGTCA 5'& || | |||||||| &5' --------GCACCAGAATGCAGT 3' Trim35 mmu-miR-139-5p beg:477 end:497 pic:3' GAC-CTCTGTGCACGTGACATCT 5'& ||| |.|| ||||||||. &5' CTGTGGGAA-----CACTGTAGG 3' Trim35 mmu-miR-680 beg:224 end:244 pic:3' GGGGGTACAGTCGTCTACGGG 5'& ||.| |||| |||||||. &5' --CCTA--TCAGGAGATGCCT 3' Trim35 mmu-miR-697 beg:115 end:133 pic:3' AGAGGTGTCCTGGTCCTACAA 5'& |.|| .|||||||| &5' ---CTACCT--TCAGGATGT- 3' Trim35 mmu-miR-205 beg:1992 end:2011 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& ||| |. ||||||| &5' --GAC-CTTTTATTATGAAGG- 3' Trim35 mmu-miR-880 beg:1000 end:1019 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& |.| | | |||||||| &5' --TGC-CT--GTAGATGGAGT- 3' Trim35 mmu-miR-759 beg:666 end:677 pic:3' CAGTTTTAACAAACGTGAGACG 5'& |||||||. &5' --------------CACTCTGT 3' Trim35 mmu-miR-370 beg:1809 end:1827 pic:3' TGGTCCAAGGTGGG-GTCGTCCG 5'& ||||| |||||||. &5' --------CCACCGGCAGCAGGT 3' Trim35 mmu-miR-485 beg:383 end:396 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& |||||||||| &5' -----------GGCCAGCCTC- 3' Trim35 mmu-miR-412 beg:1813 end:1830 pic:3' GCCGATCACCTGGTCCACTT 5'& |||| || |||||||. &5' CGGC-AG-----CAGGTGAG 3' Trim35 mmu-miR-1983 beg:1815 end:1830 pic:3' TCTTTTGTACGAGGTCCACTC 5'& || |||||||| &5' ---------GCAGCAGGTGAG 3' Trim35 mmu-miR-468 beg:993 end:1004 pic:3' GTCTGTGTGCGTGTAGTCAGTAT 5'& ||||||||. &5' --------------TCAGTCATG 3' Trim35 mmu-miR-141 beg:1259 end:1277 pic:3' GGTAGAAATGG-TCTGTCACAAT 5'& .| .|||||||||. &5' --------GCAGGGACAGTGTTG 3' Trim35 mmu-miR-145star beg:265 end:281 pic:3' GTTCTTGTCATAAA-GGTCCTTA 5'& |.||| ||||||| &5' ---------TGTTTCCCAGGAA- 3' Trim35 mmu-miR-2134 beg:1030 end:1047 pic:3' CGTGGGGCAAAGGGTTCTG 5'& ||| |||||||| &5' --ACCAAA--TCCCAAGA- 3' Trim35 mmu-miR-327 beg:577 end:595 pic:3' TAGGAGTAC-GG--GGAGTTCA 5'& || || |||||||| &5' -------TGACCAGCCTCAAGT 3' Trim35 mmu-miR-125a-5p beg:1067 end:1079 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& ||||||||. &5' ---------------TCTCAGGGG 3' Trim35 mmu-miR-125b-5p beg:1067 end:1079 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||||||||. &5' -------------TCTCAGGGG 3' Trim35 mmu-miR-1935 beg:1840 end:1858 pic:3' TCTCTAGGCGGTC-GGAGACGGA 5'& || .||||||| &5' -------CGAATTCTCTCTGCC- 3' Trim35 mmu-miR-1935 beg:969 end:988 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& || .|.| ||||||||| &5' ----ATGTGTC--CCTCTGCCT 3' Trim35 mmu-miR-24 beg:80 end:97 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||| .||||||| &5' -------TGCTTGGCTGAGCC- 3' Trim35 mmu-miR-194 beg:665 end:680 pic:3' AGGTGTACCTCAACGACAATGT 5'& |||| ||||||| &5' -CCACT--------CTGTTAC- 3' Trim35 mcmv-miR-m01-3 beg:331 end:350 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& .||||| || | ||||||| &5' ---GGGCAA-AG-C-CTTCACC- 3' Trim35 mmu-miR-3099star beg:1862 end:1879 pic:3' GTTCCCGACCTTCCTTCGACC 5'& |||| |||||||||| &5' -----GCTG--AGGAAGCTGG 3' Trim35 mmu-miR-132 beg:862 end:874 pic:3' GCTGGTACCGACATCTGACAAT 5'& || |||||||. &5' -----------GT-GACTGTTG 3' Trim35 mmu-miR-1939 beg:687 end:703 pic:3' CACGTAACCGTCCCTTAGCT 5'& |||| |||||||| &5' -------GGCACGGAATCGA 3' Trim35 mmu-miR-382star beg:1573 end:1590 pic:3' TTTTTCACAACAGGCACTTACT 5'& |||| | ||||||| &5' -----GTGTG--CAGTGAATG- 3' Trim35 mmu-miR-367 beg:1324 end:1342 pic:3' AGTGGTAACGATT-TCACGTTAA 5'& ||| .||||||| &5' -------TGCGCCTGGTGCAAT- 3' Trim35 mmu-miR-32 beg:1324 end:1343 pic:3' ACGTTGAATCATTACACGTTAT 5'& |||. || |||||||. &5' TGCGCCTG------GTGCAATG 3' Trim35 mmu-miR-25 beg:1327 end:1343 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& .|| .|||||||| &5' ----GCCT-----GGTGCAATG 3' Trim35 mmu-miR-92b beg:1327 end:1343 pic:3' CCTCCGGCCCTGCTCACGTTAT 5'& ||| .| |||||||. &5' ----GCC----TG-GTGCAATG 3' Trim35 mmu-miR-183 beg:591 end:605 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ..||||||||| &5' -----------TTAGTGCCATA 3' Trim35 mmu-miR-1192 beg:2006 end:2025 pic:3' TTAAACCAGACAAACAAACAAA 5'& |||.| ||||||| &5' -----GGTTTACAAGTTTGTT- 3' Trim35 mmu-miR-495 beg:2006 end:2025 pic:3' TTCTTCACGTGGTACAAACAAA 5'& |.|| .|| ||||||| &5' ---AGGTTTACAA-GTTTGTT- 3' Trim35 mcmv-miR-m107-1-5p beg:852 end:872 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& .||. || | ||||||.| &5' ----GCTTCAGTC-AGTGACTG 3' Trim35 mcmv-miR-m108-1 beg:829 end:850 pic:3' GCTGTG-CTCGGTGGCAGTCTTT 5'& || | ||||| |||||.| &5' -GAGAAGGAGCC----TCAGAGA 3' Trim35 mcmv-miR-m108-1 beg:109 end:130 pic:3' GCTGTGCTCGGTGGCAGTCTTT 5'& | ||. ||.||| ||||.| &5' -GTCAT--GCTACCTTCAGGA- 3' Trim35 mcmv-miR-m108-2-5p.1 beg:849 end:873 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& | ||||. ||| ||||||.|. &5' -GCTGCTTCAGTC-AGTGACTGT 3' Trim35 mcmv-miR-m108-2-5p.2 beg:613 end:635 pic:3' CAC-TGG-CGAGCGCTGCTCACT 5'& | ||| | .|| .|||||| &5' --GCACCAGAATGCAGTGAGTGA 3' Trim35 mcmv-miR-m59-1 beg:1639 end:1663 pic:3' GACTGCCAGCTCC--GTGACGATT 5'& ||| .||| ..|||||| &5' CTGTTA--TGAGTTCTGCTGCTA- 3' Trim35 mcmv-miR-m59-1 beg:858 end:874 pic:3' GACTGCCAGCTCCGTGACGATT 5'& ||| || ||||.|. &5' ------GTC-AGTGACTGTTG- 3' Trim35 mghv-miR-M1-8 beg:1275 end:1297 pic:3' CTGGTTTGGG-GGTCACTCACGA 5'& |||.|| |. |||||||. &5' ---CAAGCCAGCTTGTGAGTGT- 3' Trim35 mghv-miR-M1-8 beg:426 end:450 pic:3' CTGGTTT--GGGGGTCACTCACGA 5'& ||||.. .|||| ||| |.| &5' -ACCAGGAGTCCCC-GTGTTGGTT 3' Trim35 mghv-miR-M1-8 beg:219 end:242 pic:3' CTGGTTTGGG-GGTCACTC-ACGA 5'& .|| |.||. .||| ||| ||| &5' -GCC-AGCCTATCAG-GAGATGC- 3' Trim35 mghv-miR-M1-8 beg:579 end:601 pic:3' CTGGTTTGGGGGTCACTCACGA 5'& |||| |.||.| ||| ||||| &5' GACC-AGCCTCAAGTTAGTGC- 3' Trim35 mmu-let-7e beg:105 end:125 pic:3' TTGATATGTTGG-AGGATGGAGT 5'& |||| | | ||||||. &5' -----TACAGTCATGCTACCTT- 3' Trim35 mmu-let-7istar beg:1573 end:1599 pic:3' TCGTTCCGTCAT-----CGAACGCGTC 5'& |.. |||||. || ||.||| &5' -GTGT-GCAGTGAATGTGC-TGTGCA- 3' Trim35 mmu-miR-101astar beg:858 end:880 pic:3' CGTAGTCG-TGAC-ACTATTGACT 5'& .||||. |||| ||.| |||. &5' --GTCAGTGACTGTTGGT--CTGG 3' Trim35 mmu-miR-101b beg:1578 end:1597 pic:3' AAGTCGATAGTGTCATGACAT 5'& |||. ||.||||. &5' --CAGTGAAT---GTGCTGTG 3' Trim35 mmu-miR-103 beg:836 end:858 pic:3' AGTATCGGGACATGTTACGACGA 5'& ||||. | ||||||||| &5' ----AGCCTCAGAGAATGCTGCT 3' Trim35 mmu-miR-105 beg:1185 end:1206 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& | .|. || ||||||| &5' ---ATGGGTCA-TGTGCACTTG- 3' Trim35 mmu-miR-106bstar beg:1618 end:1637 pic:3' CGTCGTTCATGGGTGTCACGCC 5'& .|| || .|||||.| &5' --GGCTTGTT---GCAGTGTG- 3' Trim35 mmu-miR-107 beg:836 end:858 pic:3' ACTATCGGGACATGTTACGACGA 5'& |. ||||. | ||||||||| &5' -GG-AGCCTCAGAGAATGCTGCT 3' Trim35 mmu-miR-1186b beg:1022 end:1044 pic:3' CACCACGTACGGAAA------TTAGGGT 5'& |||| ||||||| &5' --------TGCCAACTAACCAAATCCCA 3' Trim35 mmu-miR-1193 beg:1437 end:1458 pic:3' CTATCATTTTGCCCACTGGAT 5'& .|||| ||||||| &5' ---GGTAATTTCAATGACCTA 3' Trim35 mmu-miR-129-5p beg:1451 end:1470 pic:3' CGTTCGGGTCTG-GCGTTTTTC 5'& ||.|||| | .|.||| &5' -----CCTAGACTCTTAGAAA- 3' Trim35 mmu-miR-134 beg:975 end:1004 pic:3' GGGGAGACC----AGTT-G-GTCAGTGT 5'& ||||||| || | ||||||. &5' -CCCTCTGCCTTTTCTTTCTCAGTCAT- 3' Trim35 mmu-miR-136 beg:997 end:1019 pic:3' GGTAGTAGTTTTGTTTACCTCA 5'& .|||| .|.||||||| &5' --GTCATGCCTGTAGATGGAGT 3' Trim35 mmu-miR-136star beg:197 end:221 pic:3' TTCTGAGT-AAA-CTCTGCTACTA 5'& ||||| ||| ||||.||||| &5' -AGACTATTTTTAGAGATGATGA- 3' Trim35 mmu-miR-139-3p beg:893 end:915 pic:3' GAGGT-TGTCCCGGCGCAGAGGT 5'& || .| |||| .||||.|| &5' --CCTTGCT-GGCCTTGTCTTCA 3' Trim35 mmu-miR-139-5p beg:995 end:1013 pic:3' GACCTCTGTGCACGTGACATCT 5'& || || ||| ||||||| &5' ----AGTCA--TGC-CTGTAGA 3' Trim35 mmu-miR-143 beg:1623 end:1644 pic:3' CTCGATGTCACG-AAGTAGAGT 5'& |.|.|||||. ||.| || &5' --GTTGCAGTGTGTTTAGCT-- 3' Trim35 mmu-miR-145 beg:1863 end:1880 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| |.||.||||| &5' --------CTGAGGAAGCTGGA- 3' Trim35 mmu-miR-145 beg:802 end:823 pic:3' TCCCTAAGGACCCTTT--TGACCTG 5'& |||| ||||| |||||| &5' ------TCCTTGGAAATCACTGGA- 3' Trim35 mmu-miR-145star beg:217 end:238 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||| ||| .|||||. &5' -AAGC-CAGCCTA-TCAGGAG- 3' Trim35 mmu-miR-146a beg:736 end:757 pic:3' TTGGGTACCTTAA---GTCAAGAGT 5'& ||||||| |||||.|| &5' ------TGGAATTGTCCAGTTTTC- 3' Trim35 mmu-miR-146b beg:248 end:275 pic:3' TCGGAT--ACCTTAAGT-CAAGAGT 5'& ||.||| || |||.| ||| | &5' AGTCTATTTGTCATTTATGTTTCC- 3' Trim35 mmu-miR-148astar beg:1498 end:1513 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& |.|||||.|||| &5' ----------TTTCAGAGCTTT 3' Trim35 mmu-miR-150 beg:865 end:885 pic:3' GTGACCATGTTCCCAACCCTCT 5'& |||| || ||||||| &5' -ACTGTT----GGTCTGGGAGA 3' Trim35 mmu-miR-151-5p beg:457 end:473 pic:3' TGATCTGACACTCGAGGAGCT 5'& .||.|| ||||.|| &5' ---GGATTG-----TCCTTGA 3' Trim35 mmu-miR-15a beg:1637 end:1663 pic:3' GTGTTTGGTAATAC-----ACGACGAT 5'& |.|..||||| |||||||| &5' ----AGCTGTTATGAGTTCTGCTGCTA 3' Trim35 mmu-miR-15a beg:836 end:858 pic:3' GTGTTTGGTAATAC--ACGACGAT 5'& .|.|| ||||||| &5' ---GAGCCTCAGAGAATGCTGCT- 3' Trim35 mmu-miR-15b beg:1642 end:1663 pic:3' ACATTTGGTACTAC--ACGACGAT 5'& ..|||| |||||||| &5' ------TTATGAGTTCTGCTGCTA 3' Trim35 mmu-miR-15b beg:836 end:858 pic:3' ACATTTGGTA-CTAC-ACGACGAT 5'& .|.|| || ||||||| &5' ---GAGCCTCAGAGAATGCTGCT- 3' Trim35 mmu-miR-16 beg:837 end:858 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||| ||||||| &5' -GCCTCAGAGAA--TGCTGCT- 3' Trim35 mmu-miR-16 beg:1638 end:1663 pic:3' GCGGTTATAAATGC-ACGACGAT 5'& ||. ||| |||||||| &5' -GCTGTTATGAGTTCTGCTGCTA 3' Trim35 mmu-miR-16star beg:362 end:388 pic:3' AGTCGTCGTG-TCAGT-TATGACC 5'& |||.|| || |||.| .||.||| &5' -CAGTAGGACAAGTTAGGTATTGG 3' Trim35 mmu-miR-181a beg:1275 end:1297 pic:3' TGAGTGGCTGTCGCA-ACTTACAA 5'& || | |||| |||.||| &5' ---CAA-GCCAGCTTGTGAGTGT- 3' Trim35 mmu-miR-181a beg:1569 end:1591 pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& ||.|| || ||||||| &5' ---CATCGTGTGCAGTGAATGT- 3' Trim35 mmu-miR-181b beg:1808 end:1830 pic:3' TGGGTGGCTGTCGT-TACTTACAA 5'& |||||||.||||| .|||. &5' -CCCACCGGCAGCAGGTGAG---- 3' Trim35 mmu-miR-181b beg:1569 end:1591 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& .|||.|| |||.||||||| &5' -TCCATCGTGTGCAGTGAATGT- 3' Trim35 mmu-miR-181b beg:1275 end:1297 pic:3' TGGGTGGCTGTCGT-TACTTACAA 5'& .| .|| ||| .|||.||| &5' GCAAGCC---AGCTTGTGAGTGT- 3' Trim35 mmu-miR-181c beg:1569 end:1591 pic:3' TGAGTGGC---TGTCCAACTTACAA 5'& ||.|| .||| ||||||| &5' ---CATCGTGTGCAG--TGAATGT- 3' Trim35 mmu-miR-181d beg:1569 end:1591 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& .|||.|| .||.||||||| &5' -TCCATCGTGTGCAGTGAATGT- 3' Trim35 mmu-miR-182 beg:1010 end:1030 pic:3' GCCACACTCAAGATGGTAACGGTTT 5'& | || ||| |||| |||||||| &5' -GATG-GAG-TCTA--ATTGCCAA- 3' Trim35 mmu-miR-1839-3p beg:1867 end:1888 pic:3' CGACAACCATCTA-TTCATCCAGA 5'& || || .||||||||| &5' ------GGAAGCTGGAGTAGGTCT 3' Trim35 mmu-miR-1839-5p beg:969 end:989 pic:3' GTTCTGGACAAGATAGATGGAA 5'& |. || || |||.|||| &5' ----ATGTG-TCCCTCTGCCTT 3' Trim35 mmu-miR-184 beg:1534 end:1555 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |||.| ||.|||| &5' ---CTTGTACCTGATCTGTCC- 3' Trim35 mmu-miR-185 beg:979 end:997 pic:3' AGTCCTTGACGG-AAAGAGAGGT 5'& ||||| |||||.||. &5' -------CTGCCTTTTCTTTCT- 3' Trim35 mmu-miR-188-3p beg:468 end:487 pic:3' ACGTTTGGGACGTACACCCTC 5'& .||.|| . ||||||| &5' ----GACTCTCTCTGTGGGA- 3' Trim35 mmu-miR-1896 beg:1946 end:1964 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& .|.| |. ||||||| &5' -----TATCTGCT-TCAGAGA- 3' Trim35 mmu-miR-1896 beg:837 end:850 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& .|| ||||||| &5' ----------GCC-TCAGAGA- 3' Trim35 mmu-miR-1904 beg:353 end:374 pic:3' GGAGGGAGGTCTCCTCGTCTTG 5'& ||||| || ||.||.|| &5' -CTCCCACCCC---AGTAGGAC 3' Trim35 mmu-miR-1905 beg:1818 end:1837 pic:3' GATGGCGCACCAC-CCTGACCAC 5'& || |||| ||.||||| &5' -----GCA-GGTGAGGGCTGGT- 3' Trim35 mmu-miR-1906 beg:1639 end:1661 pic:3' TCGGGACGG-AGTCC-GACGACGT 5'& |||.. | || ||||||| &5' ----CTGTTATGAGTTCTGCTGC- 3' Trim35 mmu-miR-1907 beg:837 end:859 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .||| |||| |||||||. &5' GCCT-CAGAGAA--TGCTGCTT 3' Trim35 mmu-miR-1907 beg:1638 end:1662 pic:3' TGGAGGT-CTAGGAGACGACGAG 5'& .|. || .||||||||| &5' GCTGTTATGAG-TTCTGCTGCT- 3' Trim35 mmu-miR-191star beg:185 end:201 pic:3' CCCTTGCTTTAGGTTCACGTCG 5'& ||| .|.|||.|| &5' --------AATGTAGGTGTAG- 3' Trim35 mmu-miR-192 beg:1721 end:1741 pic:3' CCGACAGTTAAGTA-TCCAGTC 5'& ||| .||. |||||| &5' ----GTCTGTTTTCCAGGTCA- 3' Trim35 mmu-miR-1929 beg:439 end:458 pic:3' GAGACGAGATATTTC-AGGATCTT 5'& |. .| ||||||.| &5' ----GTGTT----GGTTCCTAGGA 3' Trim35 mmu-miR-1929 beg:1448 end:1469 pic:3' GAGACGAGATATTTCAGGATCTT 5'& || ||| ||.||||| &5' ---TGACCTAGAC--TCTTAGAA 3' Trim35 mmu-miR-1929 beg:1081 end:1105 pic:3' GAGACG--AGATATTTCAGGATCTT 5'& |||. || ||| |||||.| &5' --CTGTCATCGTC-AAGACCTAGGA 3' Trim35 mmu-miR-1934 beg:1250 end:1272 pic:3' TCTCCTG-CTTCGTCCCCTGGTCT 5'& ||| | |.||||||| ||| &5' --AGGCCGGGAGCAGGGA--CAG- 3' Trim35 mmu-miR-1935 beg:91 end:109 pic:3' TCTCTAGGCGG-TCGGAGACGGA 5'& ||| || |||||.|| &5' --------GCCTAGGCTCTGTCT 3' Trim35 mmu-miR-1938 beg:344 end:364 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||| .| ||||||| &5' -ACCTAG--GCTC-TCCCACC- 3' Trim35 mmu-miR-193star beg:1081 end:1102 pic:3' AGTAGAACGG--GCGTTTCTGGGT 5'& ||.| ||. ||||||.| &5' ------TGTCATCGTCAAGACCTA 3' Trim35 mmu-miR-1949 beg:146 end:162 pic:3' TTGATACGACTGTAGGACCATATC 5'& ||. | |||||||| &5' ---------GAT-TGCTGGTATA- 3' Trim35 mmu-miR-195 beg:837 end:858 pic:3' CGGTTATAAAGACACGACGAT 5'& ||| ||||||| &5' GCCTCAGAGAA--TGCTGCT- 3' Trim35 mmu-miR-195 beg:1638 end:1663 pic:3' CGGTTATAAA-GACACGACGAT 5'& ||. ||| .| |||||||| &5' GCTGTTATGAGTTCTGCTGCTA 3' Trim35 mmu-miR-1953 beg:32 end:52 pic:3' GTCTTCGGACTC--TTGAAAGGGT 5'& |||| |.||||.|. &5' ------CCTGTCTTAGCTTTTCT- 3' Trim35 mmu-miR-1953 beg:1914 end:1936 pic:3' GTCTTCGGACTCTT----GAAAGGGT 5'& | |||.|.| ||||||. &5' -----GGCTGGGGAGCATCTTTCCT- 3' Trim35 mmu-miR-1953 beg:948 end:970 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| || ||||||. &5' CAGATTCCACCC--CTTTCCT- 3' Trim35 mmu-miR-1953 beg:981 end:999 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| |||||.|| &5' -----GCCTTTT--CTTTCTCA 3' Trim35 mmu-miR-1953 beg:257 end:277 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |.| ||||||| &5' -----GTCATTTATGTTTCCCA 3' Trim35 mmu-miR-1954 beg:936 end:954 pic:3' TTGTCCCAGAGT---GAGACGTCA 5'& ||| |||||||| &5' --------CTCTGCTCTCTGCAG- 3' Trim35 mmu-miR-1958 beg:1395 end:1412 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& |.||. |||||.| &5' -------GTTTTTTCTTTCTT- 3' Trim35 mmu-miR-1962 beg:373 end:396 pic:3' TACACAGGGTCA----CGGTCGGAGA 5'& ||. .|| ||||||||| &5' ----GTTA-GGTATTGGCCAGCCTC- 3' Trim35 mmu-miR-1962 beg:568 end:591 pic:3' TACACAGGGTC--AC-GGTCGGAGA 5'& ||. .| || |||||||| &5' ----GTTAAGGACTGACCAGCCTC- 3' Trim35 mmu-miR-1967 beg:1945 end:1969 pic:3' CGTAGAAGAGGGGTC-CTAGGAGT 5'& |.|||| |..||| || |.||| &5' GTATCTG--CTTCAGAGA-CTTCA 3' Trim35 mmu-miR-196b beg:106 end:124 pic:3' GGGTTGTTGTCCTT-TGATGGAT 5'& |||| .|||||| &5' -------ACAGTCATGCTACCT- 3' Trim35 mmu-miR-1970 beg:1 end:20 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& ||| |||| ||||||| &5' ----GCCCA-CCCC--TGACACA 3' Trim35 mmu-miR-1981 beg:546 end:565 pic:3' CGGTGCAGATTCGGG---TCGGAAATG 5'& |||.| .||||||. &5' ----------AGCTCCAGGGCCTTTG- 3' Trim35 mmu-miR-199a-5p beg:687 end:709 pic:3' CTTGT-CCATCAGACTTGTGACCC 5'& ..|| || || .||||||| &5' -GGCACGGAA-TC--GACACTGG- 3' Trim35 mmu-miR-199bstar beg:687 end:709 pic:3' CTTGT-CCATCAGATTTGTGACCC 5'& ..|| || || .||||||| &5' -GGCACGGAA-TC--GACACTGG- 3' Trim35 mmu-miR-200a beg:1256 end:1277 pic:3' TGTAGCAATGG-TCTGTCACAAT 5'& | .| .|||||||||. &5' -----GGAGCAGGGACAGTGTTG 3' Trim35 mmu-miR-202-3p beg:1927 end:1954 pic:3' AGAAGG-GTACG--CGATATGGAGA 5'& .|||| ||||. |||.|. ||| &5' -TTTCCTCATGTTTGCTGTGTATCT 3' Trim35 mmu-miR-203star beg:60 end:75 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& ||.|.||.|||| &5' ---------GTTAGGAGCCAC- 3' Trim35 mmu-miR-20bstar beg:478 end:496 pic:3' GATCTTCACGAGTGTGACGTCA 5'& ||| ||||||.|| &5' ------GTGGGAACACTGTAG- 3' Trim35 mmu-miR-212 beg:1626 end:1648 pic:3' ACCGGCACTGACCTCTGACAAT 5'& || ||| .|||||| &5' --GCAGTGTGTTTA-GCTGTTA 3' Trim35 mmu-miR-2132 beg:910 end:931 pic:3' GTAGCGCAGTTGTGGGCGG 5'& |||.| | . ||||.||| &5' CATTG-GCTTCCACCTGCC 3' Trim35 mmu-miR-2134 beg:436 end:459 pic:3' CGTGGGGCA-----AAGGGTTCTG 5'& |||||| ||||.|.||| &5' ---CCCCGTGTTGGTTCCTAGGAC 3' Trim35 mmu-miR-2134 beg:265 end:280 pic:3' CGTGGGGCAAAGGGTTCTG 5'& .||||||||.|| &5' ------TGTTTCCCAGGA- 3' Trim35 mmu-miR-2135 beg:1948 end:1968 pic:3' CAAAGCCGGGGT-TCTGGAGA 5'& || ||..|| ||||.|| &5' ---TCTGCTTCAGAGACTTC- 3' Trim35 mmu-miR-2140 beg:1111 end:1132 pic:3' TGGTGGTTCTA-GACGTGGA 5'& ||| ||||||| &5' -CCAATTTCAGCCTGCACC- 3' Trim35 mmu-miR-2140 beg:342 end:364 pic:3' TGGTGGTTCT-AGAC-GTGGA 5'& .|||| ||. ||| |||| &5' -TCACCTAGGCTCTCCCACC- 3' Trim35 mmu-miR-2140 beg:67 end:88 pic:3' TGGT-GGTTCTAGACGTGGA 5'& .||| |||.|| | |.| &5' GCCACCCAGGAG--GTGCTT 3' Trim35 mmu-miR-2141 beg:40 end:60 pic:3' TTGAAAAGACTGTGGAGGA 5'& |.|||||||| .| |||| &5' AGCTTTTCTG-TAGCTCC- 3' Trim35 mmu-miR-2146 beg:656 end:677 pic:3' GTGTACCTTGGGAAGAGGTG 5'& |||| ||.||| ||| . &5' -ACAT-GAGCCCCACTCTGT 3' Trim35 mmu-miR-223 beg:565 end:584 pic:3' ACCCCATAAACTGTTTGACTGT 5'& | ||| ..|||||| &5' -GTGGTTAA----GGACTGAC- 3' Trim35 mmu-miR-25 beg:1568 end:1586 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& || |. |||||.|| &5' -----CCAT--CGTGTGCAGTG 3' Trim35 mmu-miR-27bstar beg:338 end:357 pic:3' CAAGTGGTTAGTCGATTCGAGA 5'& .|| ||| |||.||||| &5' ----GCCT-TCACCTAGGCTCT 3' Trim35 mmu-miR-27bstar beg:86 end:105 pic:3' CAAGTGGTTAGTCGATTCGAGA 5'& | .| | |||.||||| &5' --TGGCTGAGC--CTAGGCTCT 3' Trim35 mmu-miR-290-5p beg:305 end:326 pic:3' TTTCACGGGGG--TATCAAACTCA 5'& ||||| ||.||||||| &5' -----GCCCCAGGATGGTTTGAG- 3' Trim35 mmu-miR-292-5p beg:304 end:326 pic:3' GTTTTCTCGGGGG----TCAAACTCA 5'& |||||| .||||||| &5' ------AGCCCCAGGATGGTTTGAG- 3' Trim35 mmu-miR-295star beg:305 end:326 pic:3' CTTCACACGGGGTG----TAAACTCA 5'& |||||| .|||||| &5' -------GCCCCAGGATGGTTTGAG- 3' Trim35 mmu-miR-297astar beg:1331 end:1350 pic:3' ATACCCATACACACATACATAT 5'& |||. |||||||.| &5' ----GGTGCAA-TGTATGTGT- 3' Trim35 mmu-miR-297b-3p beg:1331 end:1350 pic:3' ATACCCATACACACATACATAT 5'& |||. |||||||.| &5' ----GGTGCAA-TGTATGTGT- 3' Trim35 mmu-miR-297cstar beg:1331 end:1350 pic:3' ATACCCATACACACATACATAT 5'& |||. |||||||.| &5' ----GGTGCAA-TGTATGTGT- 3' Trim35 mmu-miR-298 beg:1838 end:1858 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& |||. . .||||||| &5' ------AACGAATTCTCTCTGCC 3' Trim35 mmu-miR-29bstar beg:214 end:228 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& |||||.||||| &5' -----------ATGAAGCCAGC 3' Trim35 mmu-miR-300star beg:898 end:915 pic:3' TGTTTCCTATTGGAG-AGAAGTT 5'& |..|||. |||||| &5' --------TGGCCTTGTCTTCA- 3' Trim35 mmu-miR-302c beg:486 end:508 pic:3' GGTGACTTTGTAC-CTTCGTGAA 5'& ||||| |. .|| ||.|.||| &5' -CACTGTAGGGTGTGAGGTACT- 3' Trim35 mmu-miR-302d beg:1425 end:1448 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& || ||.|||.| ||. |.|| &5' ACTCTTAAATA-GGGTA-ATTT- 3' Trim35 mmu-miR-30a beg:1961 end:1979 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& |||| |||.|||||.| &5' CTTC------AGGGTGTTTGC- 3' Trim35 mmu-miR-30b beg:1957 end:1979 pic:3' TCGACTCACA--TCCTACAAATGT 5'& ||| |||.|||||.| &5' ----GAGACTTCAGGGTGTTTGC- 3' Trim35 mmu-miR-30bstar beg:1031 end:1044 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& ||| |||||| &5' -----------CCAAATCCCA- 3' Trim35 mmu-miR-30c-2star beg:267 end:278 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |.|||||| &5' --------------TTTCCCAG 3' Trim35 mmu-miR-30c-2star beg:347 end:362 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& .|| | ||||||| &5' --------TAGGC-TCTCCCA- 3' Trim35 mmu-miR-30e beg:1928 end:1945 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |||| ||| |||||.| &5' -TTCC--TCA----TGTTTGC- 3' Trim35 mmu-miR-322 beg:1643 end:1662 pic:3' AGGTTTTGTACTTA--ACGACGAC 5'& .||||.| ||||||| &5' -------TATGAGTTCTGCTGCT- 3' Trim35 mmu-miR-322 beg:838 end:858 pic:3' AGGTTTTGTA-CTTAACGACGAC 5'& || || ||| ||||||| &5' -CCT---CAGAGAA-TGCTGCT- 3' Trim35 mmu-miR-324-3p beg:551 end:572 pic:3' TCGTCGTGGACCCCGTCACC 5'& ||| .||| |||||||| &5' --CAGGGCCTTTGGCAGTGG 3' Trim35 mmu-miR-326 beg:506 end:527 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||||| ||.||||| &5' -CTGGAATACA-GCTCAGAG- 3' Trim35 mmu-miR-327 beg:1952 end:1969 pic:3' TAGGAGTACGGGGAGTTCA 5'& |.||| |.|||.| &5' --CTTCAGAGACTTCAGG- 3' Trim35 mmu-miR-327 beg:965 end:983 pic:3' TAGGAG---TACGGGGAGTTCA 5'& ||||. .||.||||| &5' -TCCTTTATGTGTCCCTC---- 3' Trim35 mmu-miR-330 beg:505 end:527 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .||. |.||| ||.||||| &5' -TCTGGAATACA-GCTCAGAG- 3' Trim35 mmu-miR-330star beg:708 end:728 pic:3' AGAGACGTCCG--GGAC-ACGAAACG 5'& ||. ||| ||||||| &5' --------GGTCACCTCATGCTTTG- 3' Trim35 mmu-miR-33 beg:607 end:627 pic:3' AC-GTTACGTTGATGTTACGTG 5'& | ||| || || | |||||| &5' -GCCAAAGC-ACCAGAATGCA- 3' Trim35 mmu-miR-331-3p beg:1068 end:1080 pic:3' AAGATCCTATCCGGGTCCCCG 5'& |.||||||. &5' ------------CTCAGGGGT 3' Trim35 mmu-miR-337-3p beg:1866 end:1880 pic:3' TCCGTAGTATATCC-TCGACTT 5'& ||| |||||.| &5' -----------AGGAAGCTGGA 3' Trim35 mmu-miR-338-3p beg:690 end:713 pic:3' GTTGTTTTAG---TGACTACGACCT 5'& ||..|||| |||| |.||| &5' --ACGGAATCGACACTG--GTTGG- 3' Trim35 mmu-miR-33star beg:467 end:493 pic:3' CACTACGT--GACACCTTTGTAAC 5'& ||| | ||||||.|||| || &5' -TGACTCTCTCTGTGGGAACACTG 3' Trim35 mmu-miR-342-5p beg:1112 end:1135 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& ||||. ||| |||||||| &5' --CAATTTCAGCCTGCACCCCT 3' Trim35 mmu-miR-3473 beg:85 end:105 pic:3' CCGACTCGGTAGAGAGGT 5'& ||||||||| |||. &5' GGCTGAGCCTAGGCTCT- 3' Trim35 mmu-miR-3474 beg:260 end:279 pic:3' CTTAGGTGCAGAGGAGGGTCCC 5'& ||..|.||. ||||||| &5' --ATTTATGTT---TCCCAGG- 3' Trim35 mmu-miR-351 beg:1951 end:1972 pic:3' GTCCG-AGTTTCCCGAGGAGTCCCT 5'& || |||.|| |.|||||| &5' ---GCTTCAGAGA---CTTCAGGG- 3' Trim35 mmu-miR-361 beg:138 end:160 pic:3' CATGGGGACCTCTAAGACTATT 5'& |. |.|||| |||.|| &5' -TGTTCTTGGATTG-CTGGTA- 3' Trim35 mmu-miR-363 beg:1321 end:1342 pic:3' ATGTCTACCTATGG--CACGTTAA 5'& ||.|| .|| ||||||| &5' ---AGGTGC--GCCTGGTGCAAT- 3' Trim35 mmu-miR-365 beg:171 end:187 pic:3' TATTCCTAAAAATCC--CCGTAAT 5'& |||| ||||||| &5' -----------TAGGATGGCATTA 3' Trim35 mmu-miR-370 beg:356 end:372 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& |||||||||.||| &5' --------CCACCCCAGTAGG- 3' Trim35 mmu-miR-374star beg:500 end:522 pic:3' GAGCC-TGTTACTATTATGTTGG 5'& || || ||. ||||||.|. &5' ---GGTACTCTGG-AATACAGCT 3' Trim35 mmu-miR-376cstar beg:737 end:751 pic:3' ATTTGTATCTTCCTT-ATAGGTG 5'& |||| |.|||| &5' -----------GGAATTGTCCA- 3' Trim35 mmu-miR-382star beg:1282 end:1296 pic:3' TTTTTCACAACAGGCACTTACT 5'& | .||||.|| &5' ----------GCTTGTGAGTG- 3' Trim35 mmu-miR-382star beg:624 end:635 pic:3' TTTTTCACAACAGGCACTTACT 5'& ||||.||| &5' --------------GTGAGTGA 3' Trim35 mmu-miR-421 beg:854 end:877 pic:3' CGCG-GGTTAATTACAGACAACTA 5'& || .||.| |.|| ||||||.| &5' --GCTTCAGTCAGTGACTGTTGGT 3' Trim35 mmu-miR-423-3p beg:380 end:403 pic:3' TGACTCCCCGGAGTCTGGCTCGA 5'& |.||. ||||| ||.|||| &5' ATTGGCCAGCCTC--ACTGAGC- 3' Trim35 mmu-miR-423-3p beg:828 end:855 pic:3' TGACTC--CC-CGGAGTCTGGCTCGA 5'& |||| || |||||||| ||| &5' --TGAGAAGGAGCCTCAGAGAATGCT 3' Trim35 mmu-miR-423-5p beg:1537 end:1558 pic:3' TTTCA-GAGCGAGAGACGGGGAGT 5'& || | .| ||||.||.|| &5' ---GTACCTGA--TCTGTCCTTC- 3' Trim35 mmu-miR-429 beg:1255 end:1277 pic:3' TGCCGTAATGG-TCTGTCATAAT 5'& ||| | .| .||||||.||. &5' -CGGGA--GCAGGGACAGTGTTG 3' Trim35 mmu-miR-431star beg:301 end:324 pic:3' TCTTCGGGACGTTCTGCTGGAC 5'& .||||||| ||.||.| .|| &5' GGAAGCCC--CAGGATGGTTTG 3' Trim35 mmu-miR-432 beg:1769 end:1791 pic:3' GACGGG-TGACTAGATGAGGTTCT 5'& |||| .||| .||.|||| &5' -TGCCAAGCTGT----TTCTAAGA 3' Trim35 mmu-miR-449b beg:219 end:244 pic:3' CGGTC-GATTGTTGTG-ACGGA 5'& ||||| ||| ||. | ||||| &5' GCCAGCCTATCAGGAGATGCCT 3' Trim35 mmu-miR-450b-3p beg:256 end:278 pic:3' TACGTAC-GTTT-TAC-AAGGGTTA 5'& || || ||| ||||||. &5' -----TGTCATTTATGTTTCCCAG- 3' Trim35 mmu-miR-450b-5p beg:993 end:1013 pic:3' ATAAGTCCTTGTAT-GACGTTTT 5'& |||| |||. |||.|.| &5' ---TCAGT--CATGCCTGTAGA- 3' Trim35 mmu-miR-452 beg:1498 end:1521 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |.|||| |.|.||.||||| &5' -TTTCAGAG-CTTTTGTAAACA 3' Trim35 mmu-miR-452 beg:936 end:956 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& ||| .|||||||.|. &5' --CTCTGC--TCTCTGCAGAT- 3' Trim35 mmu-miR-455 beg:1943 end:1968 pic:3' CACATATACGGGCAC-CTGACG 5'& |||||| |||.. | |||| | &5' GTGTATCTGCTTCAGAGACTTC 3' Trim35 mmu-miR-463 beg:1712 end:1731 pic:3' GATGGAATATACCACAGATAGT 5'& ||||| ||| ||||.|. &5' -TACCT----TGGAGTCTGTT- 3' Trim35 mmu-miR-465b-5p beg:2025 end:2039 pic:3' GTCTAGTCGTGGTAAGATTTAT 5'& |||||||.||| &5' -----------CATTCTAGATA 3' Trim35 mmu-miR-465c-3p beg:1231 end:1246 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||| |||||.| &5' -------AGAAA--CCCTGGT- 3' Trim35 mmu-miR-465c-5p beg:2019 end:2039 pic:3' GTCTAGTCGCGGTAAGATTTAT 5'& .|.| .| |||||||.||| &5' ---GTTA-TG-CATTCTAGATA 3' Trim35 mmu-miR-466a-3p beg:1330 end:1350 pic:3' AGAATACACACGC-ACATACATAT 5'& || |||| |||||||.| &5' -----TG-GTGCAATGTATGTGT- 3' Trim35 mmu-miR-466b-3p beg:1330 end:1350 pic:3' AGAATACACACGC-ACATACATAT 5'& || |||| |||||||.| &5' -----TG-GTGCAATGTATGTGT- 3' Trim35 mmu-miR-466c-3p beg:1330 end:1350 pic:3' AGAATACACACGC-ACATACATAT 5'& || |||| |||||||.| &5' -----TG-GTGCAATGTATGTGT- 3' Trim35 mmu-miR-466d-3p beg:1330 end:1350 pic:3' GATACACACGC-ACATACATAT 5'& || |||| |||||||.| &5' ---TG-GTGCAATGTATGTGT- 3' Trim35 mmu-miR-466e-3p beg:1330 end:1350 pic:3' AGAATACACACGC-ACATACATAT 5'& || |||| |||||||.| &5' -----TG-GTGCAATGTATGTGT- 3' Trim35 mmu-miR-470star beg:140 end:159 pic:3' AGAAGAGTCTTTCCATGACCAA 5'& |||| || |.||||| &5' --TTCTTGGAT---TGCTGGT- 3' Trim35 mmu-miR-485 beg:568 end:591 pic:3' CTTAAGTAGTGCC-----GGTCGGAGA 5'& | .|.| || |||||||| &5' ----TGGTTAAGGACTGACCAGCCTC- 3' Trim35 mmu-miR-489 beg:1704 end:1727 pic:3' CGACGGTATATAC-ACCACAGTAA 5'& |||.|||||| ||| ||| &5' -CTGTCATATACCTTGGAGTC--- 3' Trim35 mmu-miR-497 beg:836 end:858 pic:3' ATGTTTGGTGTCAC--ACGACGAC 5'& .|.|| ||| | ||||||| &5' ---GAGCCTCAGAGAATGCTGCT- 3' Trim35 mmu-miR-497 beg:1647 end:1662 pic:3' ATGTTTGGTGTCAC-ACGACGAC 5'& ||| ||||||| &5' ----------AGTTCTGCTGCT- 3' Trim35 mmu-miR-503 beg:1638 end:1663 pic:3' GACGTC-ATGACAAGGGCGACGAT 5'& || | ||. |.|.||||||| &5' --GCTGTTATGAGTTCTGCTGCTA 3' Trim35 mmu-miR-505 beg:1255 end:1277 pic:3' TCTTTTGGTCGT-TCACAACTGC 5'& | |.| .| | |||||||.| &5' -GGGAGCAGGGACAGTGTTGGC- 3' Trim35 mmu-miR-509-5p beg:1705 end:1726 pic:3' TACTAACGGTGTAA--GACCTCAT 5'& ||.||.|| .|||||| &5' -----TGTCATATACCTTGGAGT- 3' Trim35 mmu-miR-509-5p beg:1862 end:1883 pic:3' TACTAACGGTGTAA--GACCTCAT 5'& ||.. |||||||| &5' ------GCTGAGGAAGCTGGAGTA 3' Trim35 mmu-miR-511 beg:530 end:550 pic:3' ACTCACGTC-TCGTTTTCCGTA 5'& |.|||. || .||||||| &5' -GGGTGTCTCAG-GAAAGGCA- 3' Trim35 mmu-miR-539 beg:1481 end:1504 pic:3' TGTG-TGGTTCCTATTAAAGAGG 5'& ||| || | .|||||.. &5' -CACAACTGACAT--GTTTCTTT 3' Trim35 mmu-miR-540-3p beg:1976 end:1998 pic:3' GGT--CCTAGCTGGAGACTGGA 5'& ||| ||.|.| |||||||| &5' CCATTGGGTTG---TCTGACCT 3' Trim35 mmu-miR-541 beg:789 end:810 pic:3' TCACACT-GGTTGTAGTCTTAGGGAA 5'& |||| . ||| | |.|||.| &5' ---GTGATTTGACA-CT-AGTCCTT- 3' Trim35 mmu-miR-542-3p beg:1692 end:1715 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& || ||. . |||||||.| &5' --TCTCTTGATTTTCTGTCATA 3' Trim35 mmu-miR-542-5p beg:453 end:473 pic:3' AGCACTGTACTACTAGGGGCTC 5'& |||| ||| .|||..|| &5' ----GACAGGATTGTCCTTGA- 3' Trim35 mmu-miR-544 beg:160 end:180 pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||.| ||.||.|| &5' -----TGTTTTCTTTGTAGGAT 3' Trim35 mmu-miR-599 beg:9 end:20 pic:3' CAAACTATTTGACTGTGTT 5'& |||||||| &5' ----------CTGACACA- 3' Trim35 mmu-miR-652 beg:582 end:604 pic:3' GTGTTGGGA-TCAC-CGCGGTAA 5'& ||.||. ||| |.||||| &5' --CAGCCTCAAGTTAGTGCCAT- 3' Trim35 mmu-miR-666-5p beg:990 end:1010 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& ||.|| |||. ||||.|. &5' --CTTTCTCAGTCATGCCTGT- 3' Trim35 mmu-miR-669i beg:1332 end:1350 pic:3' CATACGTACACACATATACGT 5'& .|||| |||||.||. &5' --GTGCAA---TGTATGTGT- 3' Trim35 mmu-miR-669j beg:1333 end:1350 pic:3' ACAAACGTACACTCATATACGT 5'& |||| ||||.||. &5' ----TGCAAT---GTATGTGT- 3' Trim35 mmu-miR-669k beg:1935 end:1956 pic:3' AACGTACG-CACATATACGTAT 5'& ||. ||| |||||| ||| &5' -TGTTTGCTGTGTATCTGC--- 3' Trim35 mmu-miR-670 beg:1062 end:1080 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .||||. |||||||.| &5' --TACCAT-----CTCAGGGGT 3' Trim35 mmu-miR-670 beg:292 end:307 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .||||| |||||| &5' ---GCCACA------CAGGGA- 3' Trim35 mmu-miR-673-3p beg:493 end:514 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||||. ||. | |.|.||| &5' GGTGT---GAGGTA--CTCTGGA 3' Trim35 mmu-miR-676 beg:110 end:132 pic:3' TCGAGT-TGTTGG-AGTCCTGCC 5'& ||| .| ||| ||||||.| &5' ---TCATGCTACCTTCAGGATG- 3' Trim35 mmu-miR-676 beg:1951 end:1974 pic:3' TCG-AGTTGTTGGAGTCCTGCC 5'& || |||. .||.||||| | &5' -GCTTCAGAGACTTCAGGGTG- 3' Trim35 mmu-miR-676 beg:291 end:320 pic:3' TCGAGT-TGT-----TGGAGTCCTGCC 5'& .|| || ||| .|| |||||.|| &5' GGC-CACACAGGGAAGCCCCAGGATGG 3' Trim35 mmu-miR-677 beg:383 end:402 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& .|| | |||||||. &5' -----GGCCAG-CCTCACTGAG 3' Trim35 mmu-miR-683 beg:1810 end:1826 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& ||| .||||||| &5' -----CACCG---GCAGCAGG 3' Trim35 mmu-miR-687 beg:110 end:132 pic:3' AGTAACGACGTAAGGTCCTATC 5'& ||| |||| | |.||||||. &5' TCA-TGCTACC-TTCAGGATG- 3' Trim35 mmu-miR-688 beg:1282 end:1293 pic:3' CTTATTCATCAGCGGACGCT 5'& ||.||.|| &5' ------------GCTTGTGA 3' Trim35 mmu-miR-690 beg:883 end:899 pic:3' AAACCAACACTC-GGATCGGAAA 5'& ||| |||.||||| &5' ---------GAGTCCTGGCCTT- 3' Trim35 mmu-miR-691 beg:261 end:281 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& ||| ||..|| | |||||| &5' -TTTATGTTTC-C--CAGGAA- 3' Trim35 mmu-miR-691 beg:223 end:238 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |||| ||||||. &5' ------GCCTA---TCAGGAG- 3' Trim35 mmu-miR-691 beg:524 end:545 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& || || | || ||||||| &5' --TTGTGGGTGTC-TCAGGAA- 3' Trim35 mmu-miR-693-3p beg:1861 end:1878 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& |||.. |.|||||| &5' ----AGCTGA----GGAAGCTG- 3' Trim35 mmu-miR-693-5p beg:1674 end:1693 pic:3' CTTTTGAAAGCCTACACCGAC 5'& || |||.| |||||||| &5' ---AAGTTTTG--TGTGGCTG 3' Trim35 mmu-miR-694 beg:189 end:212 pic:3' GAAGTCCG---TTG-TAAAAGTC 5'& .|||. .|| |||||.|| &5' ---TAGGTGTAGACTATTTTTAG 3' Trim35 mmu-miR-695 beg:1101 end:1121 pic:3' AAGTCAGTGGATAC--GGGTTAGA 5'& ||||| ||||||.| &5' -------ACCTAGCATCCCAATTT 3' Trim35 mmu-miR-697 beg:485 end:501 pic:3' AGAGGTGTCCTGGTCCTACAA 5'& ||| .|||.||| &5' ----CACTG---TAGGGTGT- 3' Trim35 mmu-miR-698 beg:817 end:837 pic:3' TC-CCTTCCTTTGCTCTTAC 5'& .| |||||| |.||||| &5' GGAGGAAGGT-ATGAGAA-- 3' Trim35 mmu-miR-705 beg:1795 end:1817 pic:3' AC-GGGTGGGGTG-GAGGGTGG 5'& | ||||.... |||||||| &5' -GTCCCATTTTCTACTCCCACC 3' Trim35 mmu-miR-705 beg:342 end:364 pic:3' ACGGGTGGGG-TG-GAGGGTGG 5'& ..||||. .| |||||||| &5' --TTCACCTAGGCTCTCCCACC 3' Trim35 mmu-miR-705 beg:1471 end:1494 pic:3' AC-GGGTGGGGTGGAGGGTGG 5'& || |..||||||| |. || &5' TGACTTACCCCACAACTGAC- 3' Trim35 mmu-miR-706 beg:1488 end:1504 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& |||| ||||||.| &5' --------GACAT-GTTTCTTT 3' Trim35 mmu-miR-708 beg:2029 end:2049 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& |||||| |||.||||| &5' -----CTAGATAA-AAGTTCCTT 3' Trim35 mmu-miR-709 beg:1844 end:1863 pic:3' AGGAG-GACGGAGACGGAGG 5'& |.||| ||||| || |.| &5' TTCTCTCTGCC-CT-CTT-- 3' Trim35 mmu-miR-709 beg:974 end:996 pic:3' AGGAGGACGGAGACGGAGG 5'& ||| ||||||.| |.|.| &5' TCCCTCTGCCTTTTCTTTC 3' Trim35 mmu-miR-710 beg:1130 end:1151 pic:3' GAGTTGAG-AGGG-GTTCTGAACC 5'& ||| |. .|||||||| &5' -----CTCATTACATAAGACTTG- 3' Trim35 mmu-miR-713 beg:1679 end:1696 pic:3' CGACACACGGAAGTCACGT 5'& .|||||| || |||. &5' -TTGTGTGGCT---GTGT- 3' Trim35 mmu-miR-742 beg:393 end:415 pic:3' AAATGGGTCGTACC-ACCGAAAG 5'& ||. |||||| ||||||| &5' ---ACTGAGCATGCATGGCTTT- 3' Trim35 mmu-miR-742star beg:515 end:536 pic:3' ACTAATCGTTG-GT----ACACTCAT 5'& ||.| || ||||.||. &5' -------CAGCTCAGAGTTGTGGGTG 3' Trim35 mmu-miR-742star beg:1273 end:1296 pic:3' ACTAATCG-TTGGT---ACACTCAT 5'& ||.|| |.||| |||||||. &5' ---TTGGCAAGCCAGCTTGTGAGTG 3' Trim35 mmu-miR-743b-5p beg:413 end:431 pic:3' ACTACCTGTGG-TCAGACTTGT 5'& .||.| .|||||||| &5' ------GCATCTGGTCTGAAC- 3' Trim35 mmu-miR-743b-5p beg:382 end:404 pic:3' ACTACCTG-TGGTCAGACTTGT 5'& ||| .|| ||||.|| &5' ---TGGCCAGCCTCACTGAGCA 3' Trim35 mmu-miR-759 beg:495 end:512 pic:3' CAGTTTTAACAAA-CGTGAGACG 5'& ||| |.|||||| &5' --------TGTGAGGTACTCTG- 3' Trim35 mmu-miR-760 beg:544 end:561 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& .||| ||||.||| &5' -----GCAGCTCCAGGGCC- 3' Trim35 mmu-miR-762 beg:220 end:230 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& ||||||. &5' --------------CCAGCCT- 3' Trim35 mmu-miR-762 beg:573 end:591 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& | |.| ||||||.| &5' -----GGACTGA--CCAGCCTC 3' Trim35 mmu-miR-764-3p beg:903 end:924 pic:3' TGTCAACGGTGAT-ACCGGAGGA 5'& |||.| ||||.||| &5' ----TTGTCTTCATTGGCTTCC- 3' Trim35 mmu-miR-767 beg:1227 end:1249 pic:3' ACGAGTCTG--TTGGTACCACGT 5'& |||| |||| ||||||| &5' ----CAGAAGAAACCCTGGTGCA 3' Trim35 mmu-miR-767 beg:1318 end:1340 pic:3' ACGAG-TCTGT-TGGTACCACGT 5'& |. || . .|| ||||||| &5' -GTGAAAGGTGCGCC-TGGTGCA 3' Trim35 mmu-miR-7a beg:1713 end:1736 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& || . |.|| ||.||||| &5' ACCTTGGAGTCT---GTTTTCCA 3' Trim35 mmu-miR-7b beg:1713 end:1736 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& || . |.|| ||.||||| &5' ACCTTGGAGTCT---GTTTTCCA 3' Trim35 mmu-miR-7b beg:1482 end:1506 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ||||| .| ||.. ||||.|| &5' ACAACT-GA-CATGTTTCTTTCA 3' Trim35 mmu-miR-877 beg:975 end:998 pic:3' GGGACGCGGTAGAGGAGATG 5'& |||| .||| |.||.|. | &5' CCCTCTGCCTTTTCTTTCTC 3' Trim35 mmu-miR-878-3p beg:1629 end:1650 pic:3' AGATGGGTCACAC----C-ACAGTACG 5'& ||||||| | |||.||| &5' ------CAGTGTGTTTAGCTGTTATG- 3' Trim35 mmu-miR-878-5p beg:2018 end:2039 pic:3' ACAGAACTGTAGGTTGATCTAT 5'& |||. || |||. ||||||| &5' TGTTATG-CATT---CTAGATA 3' Trim35 mmu-miR-879 beg:829 end:845 pic:3' CCGAATCTCGATATTCGGAGA 5'& ||| .|||||| &5' ------GAGAAG-GAGCCTC- 3' Trim35 mmu-miR-880 beg:1862 end:1883 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& .|| || || ||||||| &5' ---GCTGAGGAAGC-TGGAGTA 3' Trim35 mmu-miR-881star beg:1835 end:1856 pic:3' TCTACACTGACAATAGAGAGAC 5'& ||| || |||||||| &5' ---TGTAACGAAT-TCTCTCTG 3' Trim35 mmu-miR-881star beg:467 end:482 pic:3' TCTACACTGACAATAGAGAGAC 5'& |||| |||||||| &5' -----TGAC-----TCTCTCTG 3' Trim35 mmu-miR-882 beg:461 end:481 pic:3' TGATTACGCG-ATTGAGAGAGGA 5'& ||. | |.||||||||. &5' -----TGTCCTTGACTCTCTCT- 3' Trim35 mmu-miR-882 beg:1835 end:1855 pic:3' TGATTACGCGA-TTGAGAGAGGA 5'& ||. ||.||||||. &5' -----TGTAACGAATTCTCTCT- 3' Trim35 mmu-miR-883a-5p beg:979 end:1001 pic:3' CATTGACGATGAAG--AGAGTCGT 5'& |||| .||| ||||||. &5' ----CTGCCTTTTCTTTCTCAGT- 3' Trim35 mmu-miR-883b-5p beg:980 end:1001 pic:3' ACTGACGATGGGT----AAGAGTCAT 5'& ||.||. |||||||| &5' ------CTGCCTTTTCTTTCTCAGT- 3' Trim35 mmu-miR-9 beg:594 end:615 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& .|.| |||| ..|||||| &5' --GTGCCA-TAGA-GGCCAAAG- 3' Trim35 mmu-miR-92a beg:1321 end:1343 pic:3' GTCCG-GCCCTGTTCACGTTAT 5'& |||. || .|||||||. &5' -AGGTGCGCCT--GGTGCAATG 3' Trim35 mmu-miR-96 beg:1577 end:1598 pic:3' TCGTT-TTTACACGATCACGGTTT 5'& |||. .|||||||| |||| &5' -GCAGTGAATGTGCT-GTGC---- 3' Trim35 mmu-miR-98 beg:105 end:125 pic:3' TTGTTATGTT-GAATGATGGAGT 5'& ||||. | |.||||||. &5' -----TACAGTCATGCTACCTT- 3' Trim35 mmu-miR-98 beg:1939 end:1960 pic:3' TTGTTATGTTGAAT-GATGGAGT 5'& |.| || ||.|.||| &5' -----TGCTGTGTATCTGCTTCA 3' Trim35 mmu-miR-1982.2 beg:481 end:500 pic:3' GACACCCTCTTG-TATCCCACT 5'& ||||| || .||||||| &5' ---TGGGAACACTGTAGGGTG- 3' Trim35 mmu-miR-669h-3p beg:2015 end:2031 pic:3' ACACGTACACACATATACGTAT 5'& || ||| ||||||| &5' -------GTTTGT-TATGCAT- 3' Trim35 mmu-miR-669k beg:2015 end:2031 pic:3' AACGTACGCACATATACGTAT 5'& |. ||| ||||||| &5' ------GTTTGT-TATGCAT- 3' Trim35 mmu-miR-1938 beg:1803 end:1818 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& |||| |||||||| &5' -------CTAC---TCCCACCG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim35 RAID00025451 mmu-miR-15b-5p miRNA MIMAT0000124 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID00210652 mmu-miR-3474 miRNA MIMAT0015646 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00246702 mmu-miR-144-3p miRNA MIMAT0000156 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID00308145 mmu-miR-6984-5p miRNA MIMAT0027870 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00310450 mmu-miR-6945-5p miRNA MIMAT0027790 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00315758 mmu-miR-495-3p miRNA MIMAT0003456 Trim35 mRNA 66854 Prediction 0.2202 Trim35 RAID00325488 mmu-miR-1192 miRNA MIMAT0005850 Trim35 mRNA 66854 Prediction 0.2202 Trim35 RAID00333216 mmu-miR-5113 miRNA MIMAT0020621 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00431170 mmu-miR-1896 miRNA MIMAT0007873 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00433859 mmu-miR-882 miRNA MIMAT0004847 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00437763 mmu-miR-6959-5p miRNA MIMAT0027818 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00476728 mmu-miR-147-5p miRNA MIMAT0017269 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00607536 mmu-miR-7225-3p miRNA MIMAT0028419 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00638873 mmu-miR-5710 miRNA MIMAT0022505 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00661485 mmu-miR-181b-5p miRNA MIMAT0000673 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00914182 mmu-miR-206-3p miRNA MIMAT0000239 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID00930821 mmu-miR-212-3p miRNA MIMAT0000659 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00982359 mmu-miR-370-3p miRNA MIMAT0001095 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID00986716 mmu-miR-6353 miRNA MIMAT0025096 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01023991 mmu-miR-1907 miRNA MIMAT0007876 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01256385 mmu-miR-7237-3p miRNA MIMAT0028443 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01274348 mmu-miR-6995-5p miRNA MIMAT0027892 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01391746 mmu-miR-194-5p miRNA MIMAT0000224 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01424344 mmu-let-7f-5p miRNA MIMAT0000525 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID01428673 mmu-miR-132-3p miRNA MIMAT0000144 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01455444 mmu-miR-27a-5p miRNA MIMAT0004633 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01463342 mmu-miR-6938-5p miRNA MIMAT0027776 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01549500 mmu-miR-186-5p miRNA MIMAT0000215 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01567278 mmu-miR-26b-5p miRNA MIMAT0000534 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01568190 mmu-miR-6393 miRNA MIMAT0025143 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01603541 mmu-miR-298-3p miRNA MIMAT0017007 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01683924 mmu-miR-122-5p miRNA MIMAT0000246 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID01739790 mmu-miR-494-3p miRNA MIMAT0003182 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01764339 mmu-miR-694 miRNA MIMAT0003474 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01785998 mmu-miR-6342 miRNA MIMAT0025085 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01841354 mmu-miR-6419 miRNA MIMAT0025175 Trim35 mRNA 66854 Prediction 0.2202 Trim35 RAID01884237 mmu-miR-342-3p miRNA MIMAT0000590 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID01928777 mmu-miR-5107-5p miRNA MIMAT0020615 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01945742 mmu-miR-182-5p miRNA MIMAT0000211 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID01957986 mmu-miR-190a-5p miRNA MIMAT0000220 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02081112 mmu-miR-130b-3p miRNA MIMAT0000387 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02081719 mmu-miR-3093-5p miRNA MIMAT0014907 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02105595 mmu-miR-200b-5p miRNA MIMAT0004545 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02107911 mmu-miR-195b miRNA MIMAT0025076 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02136246 mmu-miR-134-5p miRNA MIMAT0000146 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID02169047 mmu-miR-7216-5p miRNA MIMAT0028400 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02266328 mmu-miR-298-5p miRNA MIMAT0000376 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID02272725 mmu-miR-181d-5p miRNA MIMAT0004324 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02445657 mmu-miR-8100 miRNA MIMAT0031403 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02491490 mmu-miR-3057-3p miRNA MIMAT0014823 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02571911 mmu-miR-290a-5p miRNA MIMAT0000366 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02609613 mmu-miR-7239-5p miRNA MIMAT0028446 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02639396 mmu-miR-504-3p miRNA MIMAT0017277 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02674948 mmu-miR-16-5p miRNA MIMAT0000527 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID02738025 mmu-miR-223-3p miRNA MIMAT0000665 Trim35 mRNA 66854 Prediction 0.2202 Trim35 RAID02765855 mmu-miR-7656-3p miRNA MIMAT0029819 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02794800 mmu-miR-15a-5p miRNA MIMAT0000526 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID02802226 mmu-miR-200a-5p miRNA MIMAT0004619 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02816329 mmu-miR-205-3p miRNA MIMAT0017003 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02825736 mmu-miR-5129-5p miRNA MIMAT0020640 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID02831838 mmu-miR-18a-5p miRNA MIMAT0000528 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6308 Trim35 RAID03080488 mmu-miR-125a-3p miRNA MIMAT0004528 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03094875 mmu-miR-217-5p miRNA MIMAT0000679 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03097096 mmu-miR-717 miRNA MIMAT0003510 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03131520 mmu-miR-195a-5p miRNA MIMAT0000225 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID03189193 mmu-miR-543-3p miRNA MIMAT0003168 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03313763 mmu-miR-107-3p miRNA MIMAT0000647 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID03340211 mmu-miR-320-3p miRNA MIMAT0000666 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03361054 mmu-miR-3087-5p miRNA MIMAT0014895 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03561202 mmu-miR-383-3p miRNA MIMAT0017082 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03576863 mmu-miR-322-5p miRNA MIMAT0000548 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID03623365 mmu-miR-485-5p miRNA MIMAT0003128 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03629188 mmu-miR-671-5p miRNA MIMAT0003731 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03653672 mmu-miR-497a-5p miRNA MIMAT0003453 Trim35 mRNA 66854 CLIP-seq//Prediction 0.6478 Trim35 RAID03681714 mmu-miR-292a-5p miRNA MIMAT0000369 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03684223 mmu-miR-185-5p miRNA MIMAT0000214 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03688695 mmu-miR-7661-5p miRNA MIMAT0029828 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03698733 mmu-miR-26a-5p miRNA MIMAT0000533 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03713399 mmu-miR-7689-3p miRNA MIMAT0029909 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03785901 mmu-miR-7049-5p miRNA MIMAT0028002 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03891331 mmu-miR-183-5p miRNA MIMAT0000212 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03896928 mmu-miR-466q miRNA MIMAT0020631 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03899802 mmu-miR-18b-5p miRNA MIMAT0004858 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03901070 mmu-miR-6953-3p miRNA MIMAT0027807 Trim35 mRNA 66854 Prediction 0.1828 Trim35 RAID03906141 mmu-miR-103-3p miRNA MIMAT0000546 Trim35 mRNA 66854 CLIP-seq 0.5483 Trim35 RAID03965435 mmu-miR-205-5p miRNA MIMAT0000238 Trim35 mRNA 66854 Prediction 0.2202