DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004541 mmu-miR-188-3p 213019 Pdlim2 acguuugggaCG-UACACCCUc || :||||||| uaaguaugaaGCGGUGUGGGAu 2 12 1136 1157 [mm9:14:70570106-70570127:-] 0.5467 142 7 -14.69 -0.3618 MIMAT0004544 mmu-miR-193* 213019 Pdlim2 aguagaaCGGGC-GUUUCUGGGu |:||| |||||||| aagauggGUCCGAGAAAGACCCa 2 16 1318 1340 [mm9:14:70569923-70569945:-] 0.4882 154 7 -25.56 -0.1861 MIMAT0000240 mmu-miR-207 213019 Pdlim2 cuCCCUCCUCUCGGUCCUCUUCg ||||||:|:|:| ||||||| ugGGGAGGGGGGUCUGGAGAAGg 2 22 972 994 [mm9:14:70570269-70570291:-] 0.5467 185 7 -39.54 -0.1441 MIMAT0000376 mmu-miR-298 213019 Pdlim2 cccuucuugucGGGAGGAGACGg ||:|||||||| uucugucuccuCCUUCCUCUGCu 2 13 663 685 [mm9:14:70570578-70570600:-] 0.5156 156 7 -22.96 -0.1389 MIMAT0000376 mmu-miR-298 213019 Pdlim2 cccuucuuGUCGGGAGGA-GACGg ::|||:|||| |||| acucucucUGGCCUUCCUCCUGCa 2 16 193 216 [mm9:14:70564207-70564230:-] 0.5424 127 0 -22.14 -0.1521 MIMAT0004630 mmu-miR-26b* 213019 Pdlim2 cucGGUUCAUUACCUCUUGUCc ::::| | | ||||||| gaaUUGGGGACUCAAGAACAGg 2 20 1577 1598 [mm9:14:70569665-70569686:-] 0.4989 147 7 -17.14 -0.2312 MIMAT0004635 mmu-miR-92a* 213019 Pdlim2 cauuacgGUGGUUAGGGGUGGa | || |||||||| acccccaCCCCUCUCCCCACCc 2 16 558 579 [mm9:14:70570684-70570705:-] 0.5491 151 7 -25.87 -0.1327 MIMAT0004635 mmu-miR-92a* 213019 Pdlim2 cauuacggUGGUUAGGGGUGGa :||| ||||||| cuacccugGCCA--CCCCACCa 2 15 209 228 [mm9:14:70571035-70571054:-] 0.5576 143 7 -19.91 -0.2844 MIMAT0004656 mmu-miR-345-3p 213019 Pdlim2 cagaGGUCUGGGGA---UCA-AGUCc || |:||||| ||| |||| ugagCCUGGCCCCUCGGAGUCUCAGu 2 19 39 64 [mm9:14:70571199-70571224:-] 0.5658 125 0 -23.35 -0.1031 MIMAT0004665 mmu-miR-218-1* 213019 Pdlim2 ccacgaACUGCCUUGGUACAAa ||:| | ||||||| cuacagUGGCUG--CCAUGUUu 2 17 238 257 [mm9:14:70564166-70564185:-] 0.5424 145 7 -14.68 -0.1301 MIMAT0000672 mmu-miR-199b* 213019 Pdlim2 cuUGUCCAUCAGAU-U-UGUG-ACCc |:| | | |||| | |||| ||| acAUAUGAACUCUAUAUACACGUGGa 2 22 351 376 [mm9:14:70564047-70564072:-] 0.5424 123 0 -12.81 -1.3048 MIMAT0001094 mmu-miR-412 213019 Pdlim2 gccgaucaccUGGUCCACUu | ||||||| cccaccagccAACAGGUGAg 2 11 222 241 [mm9:14:70571022-70571041:-] 0.5494 142 7 -14.16 -0.1388 MIMAT0001094 mmu-miR-412 213019 Pdlim2 gccgaUCAC-CUGGUCCACUu :||| | ||||||| gaaggGGUGAUAGCAGGUGAu 2 16 69 89 [mm9:14:70564334-70564354:-] 0.5228 146 7 -16.03 -0.5606 MIMAT0001422 mmu-miR-434-3p 213019 Pdlim2 ucCUCAGCUCACUACCAAGUUu ||| |: |: ||||||| ugGAGAAGGAAGG-GGUUCAAu 2 21 986 1006 [mm9:14:70570257-70570277:-] 0.5467 146 7 -17.42 -0.1079 MIMAT0003120 mmu-miR-483* 213019 Pdlim2 uucugcccUCCCCUCCUC-ACu |||| ||||| || gcuuucuaAGGGAAGGAGAUGa 2 14 242 263 [mm9:14:70571000-70571021:-] 0.5494 121 0 -18.39 -0.3271 MIMAT0003166 mmu-miR-546 213019 Pdlim2 cugagGCACGGUGGUa :| ||||||| ccaagUGGGCCACCAa 2 12 20 35 [mm9:14:70571228-70571243:-] 0.5658 143 7 -14.06 -0.2508 MIMAT0003892 mmu-miR-762 213019 Pdlim2 cgAGACAGGGCCGGGG-UCGGGg ||| ||:||::|| ||||| auUCUUCCCUGGUUCCAAGCCCc 2 21 527 549 [mm9:14:70570714-70570736:-] 0.5491 136 0 -35.45 -0.1629 MIMAT0003896 mmu-miR-763 213019 Pdlim2 cggugaccaagaaGGGUCGACc |||||||| gaagggaacaaggCCCAGCUGc 2 10 840 861 [mm9:14:70570402-70570423:-] 0.5670 145 7 -18.12 -0.1261 MIMAT0003898 mmu-miR-760 213019 Pdlim2 agGGGUGUCUGGGUC-UCGGc ||||| ||||| |||| ucCCCAC---CCCAGCAGCCu 2 19 571 588 [mm9:14:70570675-70570692:-] 0.5491 122 0 -27.57 -0.1083 MIMAT0003740 mmu-miR-674 213019 Pdlim2 augugguGAGGGUAGAGUCACg ||||| |||||||| uggcuuuCUCCCUUCUCAGUGu 2 16 422 443 [mm9:14:70570820-70570841:-] 0.5161 167 7 -25.97 -0.4165 MIMAT0003740 mmu-miR-674 213019 Pdlim2 augugGUGAGGGUAGA-GUCACg :|:| | :||| ||||| uucugUAUUACGGUCUACAGUGg 2 18 224 246 [mm9:14:70564177-70564199:-] 0.5424 121 0 -15.72 -0.1571 MIMAT0003461 mmu-miR-683 213019 Pdlim2 cuccugugUCGAAUGUCGUCc ||| ||||||| cccaucugAGCAAACAGCAGc 2 14 1460 1480 [mm9:14:70569783-70569803:-] 0.4993 149 7 -13.60 -0.1393 MIMAT0003472 mmu-miR-693-5p 213019 Pdlim2 cuuuuGAAAGCCU-ACACCGAc ||||:||: ||||||| uguuuCUUUUGGGCUGUGGCUg 2 17 441 462 [mm9:14:70570801-70570822:-] 0.5161 163 7 -26.86 -0.1106 MIMAT0003472 mmu-miR-693-5p 213019 Pdlim2 cuUUUGAAAGCCUACACCGAc ::| ||| ||||||||| aaGGAAUUUAAGAUGUGGCUg 2 20 1076 1096 [mm9:14:70570167-70570187:-] 0.5467 163 7 -21.88 -0.4673 MIMAT0004826 mmu-miR-146b* 213019 Pdlim2 uggUCUUGA-CUCAGGGAUCCCg | ||:| |: |:||||||| gggAAAAUUCGGAUUCCUAGGGa 2 20 1500 1522 [mm9:14:70569741-70569763:-] 0.5024 158 7 -19.95 -0.8193 MIMAT0003492 mmu-miR-702 213019 Pdlim2 cucgcccCAUUUCCCACCCGu | :|| ||||||| ucuagaaGGGAAUGGUGGGCc 2 15 296 316 [mm9:14:70564107-70564127:-] 0.5424 150 7 -19.49 -0.7997 MIMAT0003492 mmu-miR-702 213019 Pdlim2 cucgcCCCAUUUCCC-ACCCGu | ||| :||| ||||| cgaaaGCGUAUGGGGUUGGGCa 2 17 262 283 [mm9:14:70564140-70564161:-] 0.5424 124 0 -22.48 -0.3901 MIMAT0003495 mmu-miR-705 213019 Pdlim2 acggguGGGGUGGAGGGUGg ||||| ||||||| ccaagcCCCCAACUCCCACc 2 15 541 560 [mm9:14:70570703-70570722:-] 0.5491 162 7 -30.23 -0.1057 MIMAT0003496 mmu-miR-706 213019 Pdlim2 aaaaaACUCUGUCCCAAAGAga ||: ::: |||||| auucaUGGUGUGAAGUUUCUaa 3 18 330 351 [mm9:14:70564072-70564093:-] 0.5424 125 0 -8.06 -0.1003 MIMAT0003499 mmu-miR-709 213019 Pdlim2 aggaggACGGAGACGGAGg || :|||||||| accgugUGGUUCUGCCUCa 2 14 626 644 [mm9:14:70570619-70570637:-] 0.5192 153 7 -24.40 -0.1716 MIMAT0003711 mmu-miR-652 213019 Pdlim2 guGUUGGG-AUCACCG-CGGUAa |:::|: |||||| ||||| uaCGGUCUACAGUGGCUGCCAUg 2 20 232 254 [mm9:14:70564169-70564191:-] 0.5424 126 0 -25.52 -0.3659 MIMAT0004236 mmu-miR-741 213019 Pdlim2 agauguaucuuacCGUAGAGAGu ||||||||| uccagugcuggcuGCAUCUCUCa 2 11 499 521 [mm9:14:70570742-70570764:-] 0.5326 150 7 -20.16 -0.2601 MIMAT0004850 mmu-miR-883b-5p 213019 Pdlim2 acUGACGAUGGGUAAGAGUCAu :|| :| :|| |||||||| ugGCU-UUCUCCCUUCUCAGUg 2 21 422 442 [mm9:14:70570821-70570841:-] 0.5161 158 7 -24.57 -0.2127 MIMAT0004850 mmu-miR-883b-5p 213019 Pdlim2 acuGA-CGAUGGG--UAAGAGUCAu || || |:| | ||||||| agcCUGGCCCCUCGGAGUCUCAGUa 2 20 41 65 [mm9:14:70571198-70571222:-] 0.5658 145 7 -20.58 -0.1311 MIMAT0004881 mmu-miR-466f-5p 213019 Pdlim2 guACGUGUACGUGUGUGUGCAu || || | :|:|:|||||| uaUGAAC-UCUAUAUACACGUg 2 21 354 374 [mm9:14:70564049-70564069:-] 0.5424 146 6 -20.25 -0.1372 MIMAT0004884 mmu-miR-466h 213019 Pdlim2 augugUGUUCGUGUACGU-GUGu ::|:|||| |||| ||| gcuggGUAGGCAC-UGCACCACa 2 18 108 129 [mm9:14:70571134-70571155:-] 0.5658 123 0 -20.25 -0.4496 MIMAT0004893 mmu-miR-574-5p 213019 Pdlim2 ugugugagugugugUGUGUGAGu |||||||| guuuccagagucugACACACUCu 2 10 157 179 [mm9:14:70571084-70571106:-] 0.5658 145 7 -14.34 -0.1297 MIMAT0004898 mmu-miR-654-3p 213019 Pdlim2 uuccacuaccAGUCGUCUGUAu || |||||||| acucucagacUCUGCAGACAUg 2 13 26 47 [mm9:14:70564376-70564397:-] 0.4542 152 7 -15.60 -0.2175 MIMAT0005835 mmu-miR-1-2-as 213019 Pdlim2 acCUUACAUUUCUUCAU-ACAu |:|| || ||||| ||| guGGAUAAAAUUAAGUAGUGUa 2 20 372 393 [mm9:14:70564030-70564051:-] 0.5424 123 0 -10.93 -1.2756 MIMAT0005841 mmu-miR-669h-5p 213019 Pdlim2 cguGAGUUGAUAUGUGGGUACGUa ||::| | | | :||||||| agcCUUGA-UCUCCUUCCAUGCAg 2 22 584 606 [mm9:14:70570657-70570679:-] 0.5341 155 7 -15.89 -0.1136 MIMAT0007863 mmu-miR-1902 213019 Pdlim2 uucAGUACGGAU-GACGUG-GAGa ||: ||||: |||||| ||| ugcUCG-GCCUGUCUGCACUCUCa 2 20 10 32 [mm9:14:70564391-70564413:-] 0.4542 128 0 -22.78 -0.3363 MIMAT0007872 mmu-miR-1906 213019 Pdlim2 ucGGGACGGAGUCCGACGACGu || ||||: |||||||| cuCCAGGCCUU--GCUGCUGCu 2 21 178 197 [mm9:14:70571066-70571085:-] 0.5658 157 7 -27.25 -0.1087 MIMAT0007872 mmu-miR-1906 213019 Pdlim2 ucGGGACGGAGUC-CGA-CGACGu |||| |: ||| ||| ||||| cuCCCU-CUCCAGUGCUGGCUGCa 2 21 492 514 [mm9:14:70570749-70570771:-] 0.5326 129 0 -28.16 -0.1188 MIMAT0007872 mmu-miR-1906 213019 Pdlim2 ucgggACGGAGUCCGAC-GACGu || |||:| ||| |||| caaggUG-CUCGGCCUGUCUGCa 2 18 5 26 [mm9:14:70564397-70564418:-] 0.4052 123 0 -19.94 -0.2540 MIMAT0007875 mmu-miR-1898 213019 Pdlim2 cuaGGGGAC-ACUUG-GAACUGGa |: ||| | | | ||||||| uugCUGCUGCUCACCACUUGACCu 2 20 187 210 [mm9:14:70571053-70571076:-] 0.5658 149 7 -18.98 -0.1289 MIMAT0007876 mmu-miR-1907 213019 Pdlim2 uggaggucuagGAGACGACGAg :|:||||||| ggcugaaauagUUUUGCUGCUg 2 12 458 479 [mm9:14:70570784-70570805:-] 0.5161 147 7 -15.36 -0.2747 MIMAT0007876 mmu-miR-1907 213019 Pdlim2 ugGAGGUCUAGGAGACGA-CGAg |||| ||| |||| ||| gaCUCCCUCUCCAGUGCUGGCUg 2 21 490 512 [mm9:14:70570751-70570773:-] 0.5326 124 0 -19.47 -0.1139 MIMAT0007877 mmu-miR-1894-5p 213019 Pdlim2 ucUCCGU-CCACCAUCCCCUCUc ||||| ||| |||||||| ggAGGCAUUCUGGAAGGGGAGAa 2 21 1172 1194 [mm9:14:70570069-70570091:-] 0.5467 167 7 -30.75 -0.6837 MIMAT0009425 mmu-miR-1954 213019 Pdlim2 uugucccAGAG--UGAGACGUCa |||| ||||||||| ucugcacUCUCAGACUCUGCAGa 2 15 21 43 [mm9:14:70564380-70564402:-] 0.4542 157 7 -19.82 -0.2079 MIMAT0009425 mmu-miR-1954 213019 Pdlim2 uugucCCAGAGUGA-GACGUCa || ||: || |||||| ucucuGGCCUUCCUCCUGCAGg 2 17 197 218 [mm9:14:70564205-70564226:-] 0.5424 124 6 -16.80 -0.1559 MIMAT0009441 mmu-miR-1968 213019 Pdlim2 ucaggugguaggaauuGUCGACGu ||||||| ugaagggaacaaggccCAGCUGCu 2 9 839 862 [mm9:14:70570401-70570424:-] 0.5670 140 7 -15.59 -0.1179 MIMAT0009442 mmu-miR-1969 213019 Pdlim2 uggguacaauuucagAGGUAGAa ||||||| ugauguggccacagaUCCAUCUu 2 9 1052 1074 [mm9:14:70570189-70570211:-] 0.5467 140 7 -14.09 -0.1925 MIMAT0009455 mmu-miR-1983 213019 Pdlim2 ucuuUUGUACGAGGUCCACUc | || | ||||||| ccccACCAGCCAACAGGUGAg 2 18 221 241 [mm9:14:70571022-70571042:-] 0.5494 145 7 -18.15 -0.1388 MIMAT0009455 mmu-miR-1983 213019 Pdlim2 ucUUUUGUACGA-GGUCCACUc ||:: :|| | ||||||| ggAAGGGGUGAUAGCAGGUGAu 2 20 68 89 [mm9:14:70564334-70564355:-] 0.5228 150 7 -19.25 -0.5642 MIMAT0009460 mmu-miR-1982.1 213019 Pdlim2 gacacccucuuguauCCCACUCu ||||||| cccuuuguccuugcuGGGUGAGg 2 9 123 145 [mm9:14:70564278-70564300:-] 0.5424 140 7 -16.18 -0.1122 MIMAT0011214 mmu-miR-2138 213019 Pdlim2 uaagGCGGUU-CGGGCAAGG-GAa :||:|| | | ||||| || cuagUGCUAAGGACAGUUCCACUc 2 19 173 196 [mm9:14:70564227-70564250:-] 0.5424 121 0 -19.16 -0.2608 MIMAT0011216 mmu-miR-2140 213019 Pdlim2 uggugGUUCUAGACGUGGa :|:| ||||||| cugggUAGGCACUGCACCa 2 15 109 127 [mm9:14:70571136-70571154:-] 0.5658 146 7 -15.03 -0.1699 MIMAT0011287 mmu-miR-2183 213019 Pdlim2 ucCUCCAGUCCCCAAGUu || | ||||||||| gaGAAGGAAGGGGUUCAa 2 17 988 1005 [mm9:14:70570258-70570275:-] 0.5467 156 7 -23.44 -0.2651 MIMAT0012772 mmu-miR-599 213019 Pdlim2 caaacUAUUUGACUGUGUu | |: |||||||| uuuccAGAGUCUGACACAc 2 15 158 176 [mm9:14:70571087-70571105:-] 0.5658 150 7 -13.14 -0.1369 MIMAT0012774 mmu-miR-664 213019 Pdlim2 auCCGACCCCUCAUUUACU-UAu ||| | | |||||||| || ugGGCCUGAG-GUAAAUGAUAUu 2 21 311 332 [mm9:14:70564091-70564112:-] 0.5424 126 0 -14.57 -0.5422 MIMAT0000124 mmu-miR-15b 213019 Pdlim2 acAUUUGGUACUACACGACGAu |:|| :| | | ||||||| gcUGAAAUA-GUUUUGCUGCUg 2 21 459 479 [mm9:14:70570784-70570804:-] 0.5161 154 7 -11.67 -0.2795 MIMAT0000124 mmu-miR-15b 213019 Pdlim2 acauuuGGUACUACACGACGAu ||| | ||||||| cacucuCCAGGCCUUGCUGCUg 2 17 174 195 [mm9:14:70571068-70571089:-] 0.5658 148 7 -16.61 -0.1250 MIMAT0000153 mmu-miR-141 213019 Pdlim2 gguAGAAAUGG-UCUGUCACAAu |:| | || ||||||| ggcUUUCUCCCUUCUCAGUGUUu 2 20 423 445 [mm9:14:70570818-70570840:-] 0.5161 142 7 -14.20 -0.3356 MIMAT0000225 mmu-miR-195 213019 Pdlim2 cggUUAUAAAGACACGACGAu |||| ||: ||||||| ugaAAUAGUUU--UGCUGCUg 2 19 461 479 [mm9:14:70570784-70570802:-] 0.5161 155 7 -14.23 -0.2522 MIMAT0000236 mmu-miR-203 213019 Pdlim2 gaucaccaGGAUUUGUAAAGUg |||: ||||||| cccauuccCCUGCUCAUUUCAg 2 15 136 157 [mm9:14:70571106-70571127:-] 0.5658 150 7 -13.14 -0.2520 MIMAT0000519 mmu-miR-200a 213019 Pdlim2 uguagcaauggucuGUCACAAu ||||||| gcuuucucccuucuCAGUGUUu 2 9 424 445 [mm9:14:70570818-70570839:-] 0.5161 140 7 -11.34 -0.3384 MIMAT0000526 mmu-miR-15a 213019 Pdlim2 gugUUUGGUAAUACACGACGAu |||: :|| | ||||||| cugAAAUAGUU-U-UGCUGCUg 2 20 460 479 [mm9:14:70570784-70570803:-] 0.5161 151 7 -13.08 -0.2613 MIMAT0000527 mmu-miR-16 213019 Pdlim2 gcggUUAUAAAUGCACGACGAu |||| || ||||||| cugaAAUAGUU--UUGCUGCUg 2 19 460 479 [mm9:14:70570784-70570803:-] 0.5161 151 7 -13.34 -0.2700 MIMAT0000548 mmu-miR-322 213019 Pdlim2 agGUUUUGUACUUAACGACGAc ::|||:| | |||||||| gcUGAAAUA-GUUUUGCUGCUg 2 21 459 479 [mm9:14:70570784-70570804:-] 0.5161 158 7 -22.69 -0.2747 MIMAT0000548 mmu-miR-322 213019 Pdlim2 agguuuuGUACUUAACGACGAc || | |||||||| cacucucCAGGCCUUGCUGCUg 2 16 174 195 [mm9:14:70571068-70571089:-] 0.5658 151 7 -19.59 -0.1275 MIMAT0000559 mmu-miR-326 213019 Pdlim2 ugaccuccuuccCGGGUCUCc |||||||| uccuuccaugcaGCCCAGAGa 2 10 594 614 [mm9:14:70570649-70570669:-] 0.5192 145 7 -15.83 -0.1598 MIMAT0000567 mmu-miR-329 213019 Pdlim2 uuUUUCCAAU-CGACCCACACaa ||| | || | |||||| guAAAUGAUAUUCAUGGUGUGaa 3 21 321 343 [mm9:14:70564080-70564102:-] 0.5424 131 0 -9.18 -0.1000 MIMAT0004642 mmu-miR-330 213019 Pdlim2 cgGAUUCUGUGUCCGGGUCUCu || |::|| |||||||| ucCUUCCAUGCA-GCCCAGAGa 2 21 594 614 [mm9:14:70570649-70570669:-] 0.5192 154 7 -25.17 -0.1613 MIMAT0000677 mmu-miR-7a 213019 Pdlim2 uguuGUUUUAGUGAUCAGAAGGu |||:: ||: ||||||| uacuCAAGGGCAU--GUCUUCCu 2 20 1432 1452 [mm9:14:70569811-70569831:-] 0.4991 152 7 -16.52 -0.1255 MIMAT0000678 mmu-miR-7b 213019 Pdlim2 uguUGUUUUAGUGUUCAGAAGGu || || :|| ||||||| gguACUCAAGGGCAUGUCUUCCu 2 21 1430 1452 [mm9:14:70569811-70569833:-] 0.4991 156 7 -16.52 -0.1355 MIMAT0004684 mmu-miR-362-3p 213019 Pdlim2 acuuaggaacuuGU-CCACACaa || |||||| guaaaugauauuCAUGGUGUGaa 3 11 321 343 [mm9:14:70564080-70564102:-] 0.5424 121 0 -12.38 -0.1010 MIMAT0000741 mmu-miR-377 213019 Pdlim2 ugUUUUC-AACGGAAACACACUa ||| | | :| | |||||| guAAAUGAUAUUCAUGGUGUGAa 2 21 321 343 [mm9:14:70564080-70564102:-] 0.5424 123 6 -8.51 -0.1128 MIMAT0003727 mmu-miR-374 213019 Pdlim2 guGAAUCGUCCAACAUAAUAUa | ||| :| | ||||||| uuCCUAG-GGAAUUUAUUAUAa 2 21 1513 1533 [mm9:14:70569730-70569750:-] 0.5024 150 7 -7.11 -0.8716 MIMAT0003453 mmu-miR-497 213019 Pdlim2 auguuuggUGUC-ACACGACGAc |:|| | ||||||| uggcugaaAUAGUUUUGCUGCUg 2 15 457 479 [mm9:14:70570784-70570806:-] 0.5161 149 7 -18.39 -0.2820 MIMAT0003456 mmu-miR-495 213019 Pdlim2 uucuucACGUGGUACAAACAAa ||: :: |||||||| uguuuuUGUUUUUUGUUUGUUu 2 17 1625 1646 [mm9:14:70569617-70569638:-] 0.4996 152 7 -9.70 -0.9885 MIMAT0003780 mmu-miR-490 213019 Pdlim2 gucguaccucaggaGGUCCAAc ||||||| cuuccuccugcaggCCAGGUUc 2 9 205 226 [mm9:14:70564197-70564218:-] 0.5424 140 7 -15.17 -0.1053 MIMAT0004869 mmu-miR-421 213019 Pdlim2 cgcGGGUUAAUUACAGACAACUa :::|| :|| ||||||| gaaUUUAAGAUGUGGCUGUUGAg 2 21 1079 1101 [mm9:14:70570162-70570184:-] 0.5467 152 7 -14.15 -0.2501 MIMAT0004896 mmu-miR-590-3p 213019 Pdlim2 ugaucgaaUAUGUAUUUUAAu :|: |||||||| auauacacGUGGAUAAAAUUa 2 14 364 384 [mm9:14:70564039-70564059:-] 0.5424 149 7 -8.21 -1.1152 MIMAT0005850 mmu-miR-1192 213019 Pdlim2 uuAAAC--CAGACAAACAAACAAa |||| |:|||||||||||| uuUUUGUUUUUUGUUUGUUUGUUu 2 21 1627 1650 [mm9:14:70569613-70569636:-] 0.4996 175 7 -18.11 -0.9236

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052163 Pdlim2 Mus musculus 213019

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Pdlim2 mmu-miR-654-3p beg:30 end:48 pic:3' TTCCACTACCAGTCGTCTGTAT 5'& || || ||||||||. &5' -----GAC--TCTGCAGACATG 3' Pdlim2 mmu-miR-218-1star beg:241 end:258 pic:3' CCACGAACTGCCTTGGTACAAA 5'& ||.| .|||||||| &5' ------TGGCT--GCCATGTTT 3' Pdlim2 mmu-miR-702 beg:300 end:316 pic:3' CTCGCCCCATTTCCCACCCGT 5'& ||| || ||||||| &5' -----GGG-AAT-GGTGGGC- 3' Pdlim2 mcmv-miR-m108-2-5p.1 beg:231 end:251 pic:3' GCCACGAGCGCAGC--TCACTGGCG 5'& || ||| ||||.|.|| &5' -------CG-GTCTACAGTGGCTGC 3' Pdlim2 mmu-miR-106b beg:17 end:37 pic:3' TAGACGTGACAGTCGTGAAAT 5'& .|||||||| |||| ||| &5' GTCTGCACTCTCAG-ACT--- 3' Pdlim2 mmu-miR-1274a beg:302 end:320 pic:3' ACCGCGGACTTGTC-CCTGGACT 5'& |||..| ||.||||| &5' --------GAATGGTGGGCCTGA 3' Pdlim2 mmu-miR-130bstar beg:57 end:77 pic:3' TCATCACG-TTGTCCCTTTCTCA 5'& || |.|||||||.|.|| &5' ------GCAAGCAGGGAAGGGGT 3' Pdlim2 mmu-miR-143 beg:232 end:257 pic:3' CTC-GATGTCA-CGAA-GTAGAGT 5'& .| ||||||| ||| ||| |. &5' -GGTCTACAGTGGCTGCCATGTT- 3' Pdlim2 mmu-miR-151-3p beg:0 end:20 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& |||||||| | |||.| ||. &5' CCTCAAGGTG-CTCGGCCTG- 3' Pdlim2 mmu-miR-154 beg:80 end:99 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& | ||| |.| |||.|.|| &5' -GCAGGTGATA--GATGATCT- 3' Pdlim2 mmu-miR-185 beg:179 end:202 pic:3' AGTCCT-TGACGGAAAGAGAGGT 5'& |||| | | || ||||||. &5' --AGGACAGTTCCACTCTCTCT- 3' Pdlim2 mmu-miR-187 beg:34 end:49 pic:3' GGCCGACGTTGTGTTCTGTGCT 5'& |||| |||||.|| &5' ----CTGC------AGACATGA 3' Pdlim2 mmu-miR-188-5p beg:58 end:78 pic:3' GGGAGGTG-GTACGTTCCCTAC 5'& || || | |||||.|| &5' -----CAAGCAGGGAAGGGGTG 3' Pdlim2 mmu-miR-1895 beg:118 end:141 pic:3' AGGAGGAGCAGGAGGAGCCCCC 5'& ||| |.|.|||||. .||| &5' TCCCCTTTGTCCTTGCTGGG-- 3' Pdlim2 mmu-miR-1946a beg:0 end:18 pic:3' TTTTCACACACGGTGGTG--ACGGGCCGA 5'& ||| .|| |||.|||| &5' ----------GCC-TCAAGGTGCTCGGC- 3' Pdlim2 mmu-miR-1946b beg:0 end:18 pic:3' TTTTCGTACACGGTGGTG--ACGGGCCG 5'& ||| .|| |||.|||| &5' ----------GCC-TCAAGGTGCTCGGC 3' Pdlim2 mmu-miR-1954 beg:21 end:43 pic:3' TTGTCCCAGAG--TGAGACGTCA 5'& .|| |||| ||||||||| &5' -GCAC--TCTCAGACTCTGCAG- 3' Pdlim2 mmu-miR-1971 beg:25 end:45 pic:3' AGAGTC-GGGTCGGAAATG 5'& |||||| |.| || || &5' TCTCAGACTCTGCAG--AC 3' Pdlim2 mmu-miR-1982.2 beg:53 end:79 pic:3' GACACCCTCTTGTA--------TCCCACT 5'& ||||.|| .|||||| &5' ------GAGAGCAAGCAGGGAAGGGGTGA 3' Pdlim2 mmu-miR-1983 beg:66 end:89 pic:3' TCTTTTGTACGAG-GTCCACTC 5'& .|||.. .|| ||||||| &5' GGAAGGGGTGATAGCAGGTGA- 3' Pdlim2 mmu-miR-200cstar beg:121 end:147 pic:3' GGTTT--GTGACGACCCATTCTGC 5'& || | .||||||||.||.| &5' CCTTTGTCCTTGCTGGGTGAGGC- 3' Pdlim2 mmu-miR-204 beg:290 end:308 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |||| .||||||| &5' --GCATCTA-----GAAGGGAA 3' Pdlim2 mmu-miR-2140 beg:11 end:28 pic:3' TGGTGGTTCTAGACGTGGA 5'& | .|| .|||||||. &5' -CGGCCT--GTCTGCACT- 3' Pdlim2 mmu-miR-2861 beg:205 end:228 pic:3' GGCGGGCGG-CGGTCCGGGG 5'& || ||.|| ||||||..|. &5' CCTCCTGCAGGCCAGGTTCT 3' Pdlim2 mmu-miR-3099 beg:186 end:207 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |.|| ||||||||.|||| &5' TTCCA---CTCTCTCTGGCCT- 3' Pdlim2 mmu-miR-30astar beg:37 end:61 pic:3' CGACGTTTGTAGGC---TGACTTTC 5'& ||||.|||| |||||.|| &5' --TGCAGACATGATTATACTGAGAG 3' Pdlim2 mmu-miR-30estar beg:38 end:61 pic:3' CGACATTTGTAGGC---TGACTTTC 5'& | |.|||| |||||.|| &5' ---GCAGACATGATTATACTGAGAG 3' Pdlim2 mmu-miR-346 beg:28 end:46 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& ||| |||| ||||||| &5' -----CAG--ACTCT-GCAGACA 3' Pdlim2 mmu-miR-3473 beg:180 end:202 pic:3' CCGA-CTCGGT-AGAGAGGT 5'& || | ||| ||||||. &5' GGACAGTTCCACTCTCTCT- 3' Pdlim2 mmu-miR-34a beg:238 end:253 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& |||. .|||||| &5' -----CAGTG-----GCTGCCA 3' Pdlim2 mmu-miR-370 beg:62 end:87 pic:3' TGGTCCAAGGTGGG--GTCGTCCG 5'& |||| .||||||. &5' --CAGGGAAGGGGTGATAGCAGGT 3' Pdlim2 mmu-miR-412 beg:65 end:89 pic:3' GCCGA--TCACC-TGGTCCACTT 5'& || .||| | ||||||| &5' -GGAAGGGGTGATAGCAGGTGA- 3' Pdlim2 mmu-miR-449c beg:231 end:252 pic:3' GGTC-GATCGTTACGTGACGGA 5'& |.| ||| ||.|| .||||| &5' -CGGTCTA-CAGTG-GCTGCC- 3' Pdlim2 mmu-miR-452 beg:203 end:220 pic:3' CAGAGTCAAAGGA-GACGTTTGT 5'& ||||| |||||..| &5' --------TTCCTCCTGCAGGC- 3' Pdlim2 mmu-miR-452 beg:25 end:46 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||||| |||||||.||| &5' -TCTCAGA---CTCTGCAGACA 3' Pdlim2 mmu-miR-466a-5p beg:351 end:375 pic:3' ATACATGTACATGTGTGTGTAT 5'& |||| || ||.|.||||.|. &5' TATGAACTC-TATATACACGTG 3' Pdlim2 mmu-miR-466b-5p beg:351 end:374 pic:3' GTACATGTACATGTGTGTGTAG 5'& .||| || ||.|.||||.| &5' TATGAACTC-TATATACACGT- 3' Pdlim2 mmu-miR-466f beg:351 end:374 pic:3' TGTACGTGTACGTGTGTGTGCA 5'& |.||| || .|.|.|||||| &5' ATATGAACTC-TATATACACGT 3' Pdlim2 mmu-miR-483star beg:53 end:79 pic:3' TTCT-GCCC-TCCCCTCCTCACT 5'& .||| | | |||| |||.|||| &5' GAGAGCAAGCAGGGAAGGGGTGA 3' Pdlim2 mmu-miR-484 beg:300 end:320 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||| || ||.|||||| &5' ---GGGAATGG--TGGGCCTGA 3' Pdlim2 mmu-miR-490 beg:153 end:173 pic:3' GTCGTACCTCAGGA-GGTCCAAC 5'& ||| .||||||| &5' ------GGACTAATGTCAGGTTG 3' Pdlim2 mmu-miR-497 beg:229 end:251 pic:3' ATGTTTGGTGTCACACGACGAC 5'& |||.. |.|||||| ||||| &5' TACGGTCTACAGTG-GCTGC-- 3' Pdlim2 mmu-miR-511 beg:307 end:324 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& | | || .|||.| &5' -----GTGG-GCCTGAGGTA- 3' Pdlim2 mmu-miR-540-3p beg:188 end:207 pic:3' GGTCCTAGCTGGAGACTGGA 5'& ||| || .|||||.||| &5' CCAC--TC--TCTCTGGCCT 3' Pdlim2 mmu-miR-592 beg:245 end:265 pic:3' TGTAGTAGC-GTAT-AACTGTGTTA 5'& .| |||. |||||||.| &5' -------TGCCATGTTTGACACGA- 3' Pdlim2 mmu-miR-668 beg:65 end:91 pic:3' CCATCACCCGGC-TCGGCTCACTGT 5'& || || |||. ||| .||||.| &5' GGAAG-GGGTGATAGCA-GGTGATA 3' Pdlim2 mmu-miR-670 beg:57 end:71 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .|| |||||| &5' ----------GCAAGCAGGGA- 3' Pdlim2 mmu-miR-678 beg:121 end:147 pic:3' GGAGGTCAGGAACG--TGGCTCTG 5'& |||.. |||||||| . .|||.| &5' CCTTT-GTCCTTGCTGGGTGAGGC 3' Pdlim2 mmu-miR-709 beg:194 end:213 pic:3' AGGAGGACGGAGACGGAGG 5'& .|||. ||||. ||||| &5' -TCTCTGGCCTT--CCTCC 3' Pdlim2 mmu-miR-767 beg:318 end:341 pic:3' ACGAGT-CTGTTGGTACCACGT 5'& |. ||.| |||||||. &5' -GTAAATGATATTCATGGTGT- 3' Pdlim2 mmu-miR-881star beg:181 end:203 pic:3' TCTACACTGACAAT---AGAGAGAC 5'& ||| ||| |||||||| &5' ------GACAGTTCCACTCTCTCTG 3' Pdlim2 mmu-miR-882 beg:190 end:202 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||||||||. &5' ------------ACTCTCTCT- 3' Pdlim2 mmu-miR-96 beg:168 end:183 pic:3' TCGTTTTTACACGATCACGGTTT 5'& |||||||||.||. &5' ----------TGCTAGTGCTAAG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pdlim2 RAID00176270 mmu-miR-6930-3p miRNA MIMAT0027761 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00187962 mmu-miR-495-3p miRNA MIMAT0003456 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00407966 mmu-miR-1192 miRNA MIMAT0005850 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00562900 mmu-miR-141-3p miRNA MIMAT0000153 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00676623 mmu-miR-16-5p miRNA MIMAT0000527 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00678088 mmu-miR-329-3p miRNA MIMAT0000567 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00809238 mmu-miR-374b-5p miRNA MIMAT0003727 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID00883791 mmu-miR-377-3p miRNA MIMAT0000741 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID01006123 mmu-miR-214-3p miRNA MIMAT0000661 Pdlim2 mRNA 213019 Reporter Assay//RT-PCR//Western Blot 0.9526 Pdlim2 RAID01127662 mmu-miR-200a-3p miRNA MIMAT0000519 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID01144180 mmu-miR-203-3p miRNA MIMAT0000236 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID01258899 mmu-miR-7655-5p miRNA MIMAT0029816 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID01603248 mmu-miR-1954 miRNA MIMAT0009425 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID01930956 mmu-miR-195a-5p miRNA MIMAT0000225 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID01982344 mmu-miR-212-5p miRNA MIMAT0017053 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02065582 mmu-miR-7b-5p miRNA MIMAT0000678 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02291045 mmu-miR-7017-3p miRNA MIMAT0027939 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02423122 mmu-miR-452-3p miRNA MIMAT0017194 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02558386 mmu-miR-330-5p miRNA MIMAT0004642 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02587268 mmu-miR-590-3p miRNA MIMAT0004896 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02592403 mmu-miR-362-3p miRNA MIMAT0004684 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02633770 mmu-miR-497a-5p miRNA MIMAT0003453 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID02970774 mmu-miR-873a-5p miRNA MIMAT0004936 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03019749 mmu-miR-326-3p miRNA MIMAT0000559 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03044186 mmu-miR-7a-5p miRNA MIMAT0000677 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03143313 mmu-miR-490-3p miRNA MIMAT0003780 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03176260 mmu-miR-7031-5p miRNA MIMAT0027966 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03234613 mmu-miR-15a-5p miRNA MIMAT0000526 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03333400 mmu-miR-421-3p miRNA MIMAT0004869 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03364683 mmu-miR-3113-3p miRNA MIMAT0014960 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03547873 mmu-miR-15b-5p miRNA MIMAT0000124 Pdlim2 mRNA 213019 Prediction 0.1828 Pdlim2 RAID03621334 mmu-miR-322-5p miRNA MIMAT0000548 Pdlim2 mRNA 213019 Prediction 0.1828