DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000367 mmu-miR-291a-5p 223499 Dcaf13 ucucucccggaggugAAACUAc |||||| ugucuuccuaccaagUUUGAUa 2 8 6 27 [mm9:15:38978312-38978333:+] 0.5508 120 6 -12.36 -0.2994 MIMAT0004573 mmu-miR-293* 223499 Dcaf13 guuuuacaGUGUGUCAAACUca :|| ||||||| ugucuuccUACCAAGUUUGAua 3 15 6 27 [mm9:15:38978312-38978333:+] 0.5508 130 0 -9.47 -0.2607 MIMAT0003173 mmu-miR-547 223499 Dcaf13 gagugaguuucuacAUGGUUc |||||| -uguuuugucuuccUACCAAg 2 8 1 20 [mm9:15:38978307-38978326:+] 0.5508 120 6 -9.27 -0.1975 MIMAT0003189 mmu-miR-291b-5p 223499 Dcaf13 ccucucccggaggugAAACUAg |||||| ugucuuccuaccaagUUUGAUa 2 8 6 27 [mm9:15:38978312-38978333:+] 0.5508 120 6 -13.36 -0.2994 MIMAT0004840 mmu-miR-743b-3p 223499 Dcaf13 agauaagucGUACUACAGAAag ::| |||||| ---------UGUUUUGUCUUcc 3 14 1 13 [mm9:15:38978307-38978319:+] 0.5508 121 0 -7.01 -0.1056 MIMAT0009402 mmu-miR-1938 223499 Dcaf13 cuggcuugauguucAGGGUGGc |||:||| ----uguuuugucuUCCUACCa 2 9 1 18 [mm9:15:38978307-38978324:+] 0.5508 124 0 -11.92 -0.1404 MIMAT0000160 mmu-miR-150 223499 Dcaf13 guGACCAUG--UUCCCAACCCUcu :|| ||| | |||||| auUUGCUACUUUUGAUUUGGGAac 3 21 35 58 [mm9:15:38978341-38978364:+] 0.5508 123 0 -9.86 -0.1084 MIMAT0000366 mmu-miR-290-5p 223499 Dcaf13 uuucACGGGGGUAUCAAACUca | |: ||| ||||||| gucuUCCUACCA-AGUUUGAua 3 19 7 27 [mm9:15:38978313-38978333:+] 0.5508 136 0 -13.86 -0.2607 MIMAT0000369 mmu-miR-292-5p 223499 Dcaf13 guuuucucggGGGUCAAACUca || ||||||| ugucuuccuaCCAAGUUUGAua 3 13 6 27 [mm9:15:38978312-38978333:+] 0.5508 132 0 -12.83 -0.2630 MIMAT0000379 mmu-miR-301a 223499 Dcaf13 cgAAACUGU-UA-UGAU-AACG-UGAc |||||:| || |:|| |||| ||| agUUUGAUAUAUAAUUAUUUGCUACUu 2 22 19 45 [mm9:15:38978325-38978351:+] 0.5508 134 0 -11.93 -1.1370 MIMAT0000651 mmu-miR-19a 223499 Dcaf13 agUCAAA--ACGUAU--CUAAACG-UGu ||||| | :||| |||||| || caAGUUUGAUAUAUAAUUAUUUGCUACu 2 22 17 44 [mm9:15:38978323-38978350:+] 0.5508 123 0 -10.36 -1.1936 MIMAT0000677 mmu-miR-7a 223499 Dcaf13 uguuguuuuaguGAUCAGAAGGu :| ||||||| ---------uguUUUGUCUUCCu 2 12 1 14 [mm9:15:38978307-38978320:+] 0.5508 143 7 -10.13 -0.7104 MIMAT0000678 mmu-miR-7b 223499 Dcaf13 uguuguuuuaguguuCAGAAGGu ||||||| ---------uguuuuGUCUUCCu 2 9 1 14 [mm9:15:38978307-38978320:+] 0.5508 140 7 -10.13 -0.7104 MIMAT0001091 mmu-miR-410 223499 Dcaf13 uguccGGUAGACACAAUAUAa ||| | || ||||| uccuaCCAAGUUUGAUAUAUa 2 17 11 31 [mm9:15:38978317-38978337:+] 0.5508 124 0 -5.63 -0.4320 MIMAT0004186 mmu-miR-301b 223499 Dcaf13 cgAAACUGU-UA-UGGU-AACG-UGAc |||||:| || |::| |||| ||| agUUUGAUAUAUAAUUAUUUGCUACUu 2 22 19 45 [mm9:15:38978325-38978351:+] 0.5508 130 0 -11.45 -1.1370 MIMAT0003456 mmu-miR-495 223499 Dcaf13 uucuucacGUGGUACAAACAAa :|||| ||||| | ugucuuccUACCAAGUUUGAUa 2 15 6 27 [mm9:15:38978312-38978333:+] 0.5508 126 0 -10.39 -0.1100

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G058632 Dcaf13 Mus musculus 223499

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Wdsof1 mmu-miR-7a beg:4 end:14 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& ||||||| &5' ---------------GTCTTCC- 3' Wdsof1 mmu-miR-7b beg:4 end:14 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ||||||| &5' ---------------GTCTTCC- 3' Wdsof1 mmu-miR-106a beg:31 end:54 pic:3' GATGGACG-TGACAATCGTGAAAC 5'& ||..||| ||| ||. |||| &5' -TATTTGCTACTTTTGA---TTTG 3' Wdsof1 mmu-miR-450b-5p beg:46 end:67 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& ||| ||||| |||.||| &5' -ATTTGGGAACT--CTGTAAA- 3' Wdsof1 mmu-miR-452 beg:47 end:69 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& .| | |||||.|||.| &5' --TTTGGGAA-CTCTGTAAATA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Dcaf13; Gm83; Wdsof1 mmu-miR-378 48 86 -UGUGUCCU--GGAC--------------CUCAGUCCUC |: :||| :||| ||||| || GAUUUGGGAACUCUGUAAAUAAAAGUCCUGAGUCUGGU- Dcaf13; Gm83; Wdsof1 mmu-miR-434-3p 70 91 CCUCAG--CUCACUACCAAGUUU |||| |||| |||||:|| -AAGUCCUGAGUC-UGGUUUAAU Dcaf13; Gm83; Wdsof1 mmu-miR-450b 48 68 AUAAGUCCUUGUAUGACGUUUU |||::||||| |||:||| GAUUUGGGAACU--CUGUAAAU Dcaf13; Gm83; Wdsof1 mmu-miR-484 50 86 UAGCCCUCC-------------CCUGACUCGGACU- |:|||| | |||||:|||: UUUGGGAACUCUGUAAAUAAAAGUCCUGAGUCUGGU Dcaf13; Gm83; Wdsof1 mmu-miR-378 66 86 UGUGUCCUGGACCUCAGUCCuc |:| | | ||| ||||| || ATAAAAGTCCT-GAGTCTGGtt Dcaf13; Gm83; Wdsof1 mmu-miR-434-3p 69 90 ccUCAG--CUCACUACCAAGUUu |||| |||| |||||:|| aaAGTCCTGAGT-CTGGTTTAAt Dcaf13; Gm83; Wdsof1 mmu-miR-484 63 84 uagcccuccccuGACUCGGACu |||||:||| taaataaaagtcCTGAGTCTGg

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dcaf13 RAID00238876 mmu-miR-301a-3p miRNA MIMAT0000379 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID00491385 mmu-miR-292a-5p miRNA MIMAT0000369 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID00628131 mmu-miR-7a-5p miRNA MIMAT0000677 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID01787156 mmu-miR-495-3p miRNA MIMAT0003456 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID01788546 mmu-miR-301b-3p miRNA MIMAT0004186 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID01892738 mmu-miR-150-5p miRNA MIMAT0000160 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID02701764 mmu-miR-290a-5p miRNA MIMAT0000366 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID03335509 mmu-miR-410-3p miRNA MIMAT0001091 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID03700634 mmu-miR-7b-5p miRNA MIMAT0000678 Dcaf13 mRNA 223499 Prediction 0.1828 Dcaf13 RAID04062187 mmu-miR-19a-3p miRNA MIMAT0000651 Dcaf13 mRNA 223499 Prediction 0.1828