DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015219 mmu-miR-3475 12181 Bop1 aaguuugguacaCGGAGGUCu |||||||| cuuccugauucaGCCUCCAGc 2 10 83 103 [mm9:15:76283552-76283572:-] 0.4366 145 7 -17.46 -0.1953 MIMAT0004237 mmu-miR-742 12181 Bop1 aaaUGGGUCGUACC------ACCGAAAg ||||| :: || ||||||| gucACCCACUGAGGUGUAACUGGCUUUa 2 20 178 205 [mm9:15:76283450-76283477:-] 0.4394 142 7 -16.67 -0.5499 MIMAT0005845 mmu-miR-466k 12181 Bop1 aguGUACAUGUACAUGUGU-GUGu | || || | |||||| ||| agcCUUG-ACCU-UACACAGCACc 2 21 112 133 [mm9:15:76283522-76283543:-] 0.4366 120 0 -10.51 -0.1838 MIMAT0007875 mmu-miR-1898 12181 Bop1 cuaggggacacUUGGAACUGGa |:|||||||| agcaacugcccAGCCUUGACCu 2 12 101 122 [mm9:15:76283533-76283554:-] 0.4366 151 7 -24.30 -0.1843 MIMAT0009409 mmu-miR-1944 12181 Bop1 uuaGUCUUGAACUGUAA---GUCGU--GUCUc ||| |||||| || ||||| |||| gccCAG-CCUUGACCUUACACAGCACCCAGAa 2 25 108 138 [mm9:15:76283517-76283547:-] 0.4366 121 0 -22.06 -0.2051 MIMAT0009435 mmu-miR-1962 12181 Bop1 uaCACAGGGUCACGGUCGGAGa || |:|| | :||||||| cuGUCUUCCUGAUUCAGCCUCc 2 21 79 100 [mm9:15:76283555-76283576:-] 0.4366 160 7 -21.47 -0.6092 MIMAT0000381 mmu-miR-34c 12181 Bop1 cgUUAGUCGAUUGAUG-UGACGGa | ||||| | :| |||||| ugAUUCAGCCUCCAGCAACUGCCc 2 22 88 111 [mm9:15:76283544-76283567:-] 0.4366 125 6 -15.95 -0.1527 MIMAT0000677 mmu-miR-7a 12181 Bop1 ugUUGUUUUA--GUGA-----UCAGAAGGu ||:|:||| ||:| ||||||| ucAAUAGAAUCCCAUUCUUCCUGUCUUCCu 2 22 59 88 [mm9:15:76283567-76283596:-] 0.4332 147 7 -21.18 -0.5696 MIMAT0000678 mmu-miR-7b 12181 Bop1 ugUUGUUUUAGUGU-------UCAGAAGGu ||:|:|||| || ||||||| ucAAUAGAAUCCCAUUCUUCCUGUCUUCCu 2 22 59 88 [mm9:15:76283567-76283596:-] 0.4332 148 7 -21.18 -0.5696 MIMAT0003128 mmu-miR-485 12181 Bop1 cuuaAGUAGUGC-CGGUCGGAGa || || :| :||||||| ccugUCUUCCUGAUUCAGCCUCc 2 19 78 100 [mm9:15:76283555-76283577:-] 0.4366 149 7 -16.88 -0.6129 MIMAT0003727 mmu-miR-374 12181 Bop1 gugaaUCGUCCAACAUAA-UAUa :| |||| ||||| ||| agaagGGAAGGUGGUAUUGAUAc 2 18 152 174 [mm9:15:76283481-76283503:-] 0.4366 129 0 -10.31 -0.4573 MIMAT0005447 mmu-miR-449b 12181 Bop1 cgGUCGAUUGUUG-UGACGGa |||| ||:| |||||| uuCAGCCUCCAGCAACUGCCc 2 19 91 111 [mm9:15:76283544-76283564:-] 0.4366 126 6 -21.19 -0.1527

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G010117 Bop1 Mus musculus 12181 9829985 0 0 R15773; MOUSE$BOP1_01; Binding factors: LEF-1-isoform1 //-20 0 R15774; MOUSE$BOP1_02; Binding factors: Sp1

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Bop1 mmu-miR-3475 beg:92 end:103 pic:3' AAGTTTGGTACACGGAGGTCT 5'& |||||||| &5' ------------GCCTCCAG- 3' Bop1 mmu-miR-1898 beg:106 end:123 pic:3' CTAGGGGACACTTGGAACTGGA 5'& ||| |.||||||||| &5' ----CCC----AGCCTTGACCT 3' Bop1 mcmv-miR-M23-2 beg:85 end:102 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |||.. |||.||| &5' -----TGATTCA-GCCTCCA- 3' Bop1 mmu-miR-1193 beg:14 end:27 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||||.|||. &5' -----------GGGTGGCCTG 3' Bop1 mmu-miR-141star beg:147 end:165 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& |||. |||||.|| &5' -CCAGAAG------GGAAGGTG 3' Bop1 mmu-miR-15astar beg:5 end:27 pic:3' ACTCCGTCGTGTCA--TACCGGAC 5'& || .|| .||||||| &5' -----CACTACTCTGGGTGGCCTG 3' Bop1 mmu-miR-1929 beg:7 end:30 pic:3' GAGACGAGATATTTCAGGATCTT 5'& || ||||. .| |||.||| &5' --CTACTCTGGGTGG-CCTGGAA 3' Bop1 mmu-miR-1940 beg:80 end:102 pic:3' TTGACGAGGTGGAA-GAGTCAGGAGGTA 5'& ||. ||| .|||| |||||| &5' ------TCTTCCTGATTCAG-CCTCCA- 3' Bop1 mmu-miR-1952 beg:148 end:166 pic:3' GTCTTCCTC-CCACCTCT 5'& |||||||. ||||| &5' CAGAAGGGAAGGTGG--- 3' Bop1 mmu-miR-1962 beg:95 end:118 pic:3' TACACAGGGTC----AC-GGTCGGAGA 5'& .|||| || |||||||. &5' ------TCCAGCAACTGCCCAGCCTT- 3' Bop1 mmu-miR-1967 beg:41 end:62 pic:3' CGTAGAAGAGGG--GTCCTAGGAGT 5'& |||| ||| ||||||| &5' -------CTCCACACAGAATCCTCA 3' Bop1 mmu-miR-1982.1 beg:23 end:38 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |.| ||||||.| &5' --------GGAAG-AGGGTGGG- 3' Bop1 mmu-miR-204 beg:150 end:161 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& .||||||| &5' --------------GAAGGGAA 3' Bop1 mmu-miR-211 beg:150 end:161 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& .||||||| &5' --------------GAAGGGAA 3' Bop1 mmu-miR-291b-3p beg:207 end:227 pic:3' TGTTTGTTTTACCTACGTGAAA 5'& .| ||.||| |||. |||| &5' GC-AATAAATTGGG-GCAC--- 3' Bop1 mmu-miR-296-3p beg:98 end:118 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& ||| | ||||.||.| &5' ----AGCAACTGCCCAGCCTT- 3' Bop1 mmu-miR-409-5p beg:10 end:26 pic:3' TACGTTTCAACGAG-CCCATTGGA 5'& ||| ||||..||| &5' -----------CTCTGGGTGGCCT 3' Bop1 mmu-miR-450a-3p beg:46 end:64 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& || || ||||.|||| &5' -------CACAGAATCCTCAAT 3' Bop1 mmu-miR-485 beg:97 end:118 pic:3' CTTAAGTAG-TGCC-GGTCGGAGA 5'& || || | |||||||. &5' -----CAGCAACTGCCCAGCCTT- 3' Bop1 mmu-miR-592 beg:162 end:178 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& .||||||.||||| &5' ----------GTATTGATACAAT 3' Bop1 mmu-miR-696 beg:93 end:115 pic:3' GGGTGTCGTT--CGTGTGCG 5'& || |||||| || || || &5' CCTCCAGCAACTGCCCA-GC 3' Bop1 mmu-miR-702 beg:18 end:40 pic:3' CTCGCC---CCATTTCCCACCCGT 5'& |.|| || |.||||||||. &5' --GTGGCCTGGAAGAGGGTGGGT- 3' Bop1 mmu-miR-742 beg:182 end:205 pic:3' AAATGGGTCGTACC---ACCGAAAG 5'& ||. || .|| ||||||| &5' ---ACTGAG-GTGTAACTGGCTTT- 3' Bop1 mmu-miR-744star beg:195 end:216 pic:3' TCCAACTCCAATCA-CCGTTGTC 5'& ||. ||| |||||.| &5' ----TGGCTTTATTGGGCAATA- 3' Bop1 mmu-miR-7a beg:58 end:88 pic:3' TGTTGTTTTAGT----GAT---CAGAAGGT 5'& |||.|.|||| || ||||||| &5' -CAATAGAATCCCATTCTTCCTGTCTTCC- 3' Bop1 mmu-miR-7b beg:58 end:88 pic:3' TGTTGTTTTAGTGTT-------CAGAAGGT 5'& |||.|.|||| || ||||||| &5' -CAATAGAATCCCATTCTTCCTGTCTTCC- 3' Bop1 mmu-miR-875-5p beg:177 end:196 pic:3' GTGGACTATTTTGACTCCATAT 5'& |||| ||||||||.|| &5' CACCC------ACTGAGGTGTA 3' Bop1 mmu-miR-9star beg:187 end:207 pic:3' TGAAAGCCAATA-GATCGAAATA 5'& ||| ||.||||||| &5' ------GGTGTAACTGGCTTTAT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Bop1; Kiaa0124 mmu-miR-10a 5 38 -GUGUUUA-AG-CCUA---GA---UGUCCCAU- |||| || ||:| || | |||||: ACACACUACUCUGGGUGGCCUGGAAGAGGGUGG Bop1; Kiaa0124 mmu-miR-149 135 156 CCUCACUUCUGUGCC----UCGGUCU- || || :|| ||||||| ----AGA--ACCUGGCUUAAGCCAGAA Bop1; Kiaa0124 mmu-miR-17-3p 171 194 -AUGUUCACGG-GAGUGACGUCA- ||||| ||:| | ||||| :|| AUACAA-UGUCACCCACUGAGGUG Bop1; Kiaa0124 mmu-miR-201 169 192 UCU-UGUUACGGAA--UGACUCAU || ||||||:| |||||| UGAUACAAUGUCACCCACUGAGG- Bop1; Kiaa0124 mmu-miR-204 16 40 GUCCGUAU--CCUACUGUUUCCCUU :||:: ||| || :: ||| UGGGUGGCCUGGAAGAGGGUGGGU- Bop1; Kiaa0124 mmu-miR-210 110 134 AGUCGGCGAC---AGUGUG-CGUGUC ||||| :|| |:|||| |||| CCAGCC-UUGACCUUACACAGCACC- Bop1; Kiaa0124 mmu-miR-211 141 162 UCCGU-UUCCUACUGUUUCCCUU- ||| ||| :||||||| UGGCUUAAGCCA---GAAGGGAAG Bop1; Kiaa0124 mmu-miR-217 76 97 UAGGUCAGUCAAGGACUACGUCAU ||| ||| |||||||| ||| UUCCUGUC--UUCCUGAUUCAGC- Bop1; Kiaa0124 mmu-miR-293 6 27 -UGUGAUGUUUGAGACGCCGUGA- ||||||| || |:||| || CACACUACU--CUGGGUGGC-CUG Bop1; Kiaa0124 mmu-miR-296 23 47 UGUCCUAACUCCC-CCC---CGGGA | ||| ||||| ||| |||: CCUGGAA-GAGGGUGGGUGUGCCUC Bop1; Kiaa0124 mmu-miR-31 92 118 -GUCGAUACGGUCGUAGAA----CGGA- |||| |||||| || |||| UCAGCCU--CCAGCAACUGCCCAGCCUU Bop1; Kiaa0124 mmu-miR-320 90 116 -AAG-CGGGAGA-GU---UGGGUCGAAAA ||| |||: || :|||||| AUUCAGCCUCCAGCAACUGCCCAGCC--- Bop1; Kiaa0124 mmu-miR-329 26 44 -UUUUUCCAAUCGACCCACACAA :||:||| |||||||| GGAAGAGGG----UGGGUGUGC- Bop1; Kiaa0124 mmu-miR-338 2 30 AGUUGUUUUAGU-GACUA--C-GACCU- ||||| |||: | ||||| CCAACACACUACUCUGGGUGGCCUGGAA Bop1; Kiaa0124 mmu-miR-34a 93 112 -UUGUUGGUCGAUUCUGUGACGGU |:| ||||| |||||| CAGCCUCCAGCA-----ACUGCCC Bop1; Kiaa0124 mmu-miR-34b 91 112 GUUAGUCGAUUAAUG-UGACGGAU ||||| :| |||||| --UUCAGCCUCCAGCAACUGCCC- Bop1; Kiaa0124 mmu-miR-34c 94 118 -CGUUAGUCGAUUGAUGUGACGGA- || |||| ||||:| | |||| AGCCUCCAGC-AACUGCCCAGCCUU Bop1; Kiaa0124 mmu-miR-431 13 35 -GGACGUACUGCCGGACGUUCUGU- :||| : :|||||| |||| : CUCUGGG---UGGCCUGGAAGAGGG Bop1; Kiaa0124 mmu-miR-449 109 132 UGGUCG--AUUGUUAUGUGACGGU ||||| |:|| ||||| || CCCAGCCUUGACCUUACACAGCA- Bop1; Kiaa0124 mmu-miR-449b 91 118 -GGUCGA---UCGUU-ACGUGACGGA- :|||| ||||| ||| | |||| UUCAGCCUCCAGCAACUGCCCAGCCUU Bop1; Kiaa0124 mmu-miR-463 206 224 ACUACCUGUUGUUUAAUCCAU |||:|||:|||||:|| --UUGGGCAAUAAAUUGGGG- Bop1; Kiaa0124 mmu-miR-469 6 35 CCUGUGGU----UCUAGUU-ACUUUCUCCGU ||||:| :|:| : ||:|||||| -CACACUACUCUGGGUGGCCUGGAAGAGGG- Bop1; Kiaa0124 mmu-miR-483 16 44 UGUUCUGCC------CUCCCCUCCUCACU ::| | ||||| :|| ||| -UGGGUGGCCUGGAAGAGGGUGGGUGUGC Bop1; Kiaa0124 mmu-miR-484 24 47 UAGCC--CUCCC-CUGACUCGGACU :|| ||||| |: || |||| -CUGGAAGAGGGUGGGUGUGCCUC- Bop1; Kiaa0124 mmu-miR-485-5p 88 119 CUUAAGUAG--------UGCCGG-UCGGAGA :||||| || ||| |||||: UGAUUCAGCCUCCAGCAACUGCCCAGCCUUG Bop1; Kiaa0124 mmu-miR-491 12 51 GGAG---UACC-------UUCCCAA------GG-GGUGA ||| :||| :||||| || |||| ACUCUGGGUGGCCUGGAAGAGGGUGGGUGUGCCUCCACA Bop1; Kiaa0124 mmu-miR-500 176 197 GACU-UGGGAACGGGUCCACGUA || |||| |: |||||:| AUGUCACCCA--CUGAGGUGUAA Bop1; Kiaa0124 mmu-miR-541 37 61 ACAC-UGGU--UGUAGUCUUAGGGAA ||| :|| ||| ||||||||: GGUGUGCCUCCACA-CAGAAUCCUC- Bop1; Kiaa0124 mmu-miR-551b 23 41 GUGACUUUGGUUCAUACCCAGC |||:|| :|| :||||| -CCUGGAA--GAGGGUGGGUG- Bop1; Kiaa0124 mmu-miR-592 164 179 UGUAGUAGCGUAUAACUGUGUUA- :||||||:||||| ---------GGUAUUGAUACAAUG Bop1; Kiaa0124 mmu-miR-666 94 116 CCGAGAGUGUCGAC-ACGGG-CGA || ||| |||| ||||| || AGC-CUC-CAGCAACUGCCCAGCC Bop1; Kiaa0124 mmu-miR-667 15 43 GAACCCG----ACCCA---CCGUCCACAGU ||||: ||| ||::||||| -CUGGGUGGCCUGGAAGAGGGUGGGUGUG- Bop1; Kiaa0124 mmu-miR-670 1 21 AAGUGG-UGUAUG-UGAGUCCCUA :|| ||| || |||| ||| ---GCCAACACACUACUCUGGGU- Bop1; Kiaa0124 mmu-miR-671 95 153 -GGAGGUCG----------GGGA---------------GGUC-----CCGAA---GGA |||||||| ||:| |||| |||| || GCCUCCAGCAACUGCCCAGCCUUGACCUUACACAGCACCCAGAACCUGGCUUAAGCCA Bop1; Kiaa0124 mmu-miR-678 95 139 -GGAGGUCA----------GGAA-----------CGUGGCUCUG ||||||| |||| ||||| ||| GCCUCCAGCAACUGCCCAGCCUUGACCUUACACAGCACCCAGAA Bop1; Kiaa0124 mmu-miR-679 21 60 -UGG---UUCUCA-------GUGGAG---UGUC--AGG- :|| ||||| ::|||| |||| ||| GGCCUGGAAGAGGGUGGGUGUGCCUCCACACAGAAUCCU Bop1; Kiaa0124 mmu-miR-685 94 121 CACGGAG--------UGGAGUCGGUAACU- ||||| :|| ||||| |||| -AGCCUCCAGCAACUGCC-CAGCC-UUGAC Bop1; Kiaa0124 mmu-miR-693-5p 25 47 -CUUUUGAAAGCCUACACCGAC |:||: :||:|||| || UGGAAGAGGGUGGGUGUGCCUC Bop1; Kiaa0124 mmu-miR-695 90 118 -AAGUCAGUGGAU----ACGGGUUAGA- ||||| | || ||||||: || AUUCAGCCUCCAGCAACUGCCCAGCCUU Bop1; Kiaa0124 mmu-miR-699 93 112 GCUCGGUCCAGCG-UGACGGA |||| || |||||| -CAGCCUCCA-GCAACUGCCC Bop1; Kiaa0124 mmu-miR-7 59 89 -GUUGUUUUAGU----GAU---CAGAAGGU |||:|:|||| || ||||||| UCAAUAGAAUCCCAUUCUUCCUGUCUUCCU Bop1; Kiaa0124 mmu-miR-702 16 41 -CUCGCC---CCAUUUCCCACCCGU |:|:|| || |:||||||||: UGGGUGGCCUGGAAGAGGGUGGGUG Bop1; Kiaa0124 mmu-miR-705 106 135 -ACGGGUGGGG--UGGAGG-----GUGG- |||||| ||: ||||: |||| CUGCCCAGCCUUGACCUUACACAGCACCC Bop1; Kiaa0124 mmu-miR-709 73 102 -AGGAGGACGGAGA--------CGGAGG- ||:|||||:||: |||||| UUCUUCCUGUCUUCCUGAUUCAGCCUCCA Bop1; Kiaa0124 mmu-miR-710 91 120 GAGUUGAGAGG--------GGUUCUGAACC |||:| |||| || || |||| UUCAGC-CUCCAGCAACUGCCCAGCCUUGA Bop1; Kiaa0124 mmu-miR-714 101 119 -CGCUGGCUGGCCGGGAGCAGC || ||:| || |||:| AGCAACUGCCCAGCCUUG---- Bop1; Kiaa0124 mmu-miR-715 23 56 -GUGCG----CC-CCCACACG------UGCCUC | | || |||||||| || || CCUGGAAGAGGGUGGGUGUGCCUCCACACAGAA Bop1; Kiaa0124 mmu-miR-718 18 40 GCUGUGGGCCGG--CCCGCCUUC | :||:|| |||:||: GGUGGCCUGGAAGAGGGUGGGU- Bop1; Kiaa0124 mmu-miR-742 130 148 AAAUGGGUCGUACCACCGAAAG |||||| |||||| --CACCCAGAACC-UGGCUUA- Bop1; Kiaa0124 mmu-miR-744 101 120 -CGACAAUCGGGAUCGGGGCGU || |||| |||| | AGCAACU-GCCC-AGCCUUGA- Bop1; Kiaa0124 mmu-miR-762 105 136 CGAGACAGGGCCGGG----------GUCG-GGG- ||| ||| |||: |||| ||| --ACUG-CCCAGCCUUGACCUUACACAGCACCCA Bop1; Kiaa0124 mmu-miR-764-3p 17 49 UGUCAACGGUGA----------UAC-CGGAGGA :|| ||| :|| |||||| -GGGUGGCCUGGAAGAGGGUGGGUGUGCCUCCA Bop1; Kiaa0124 mmu-miR-770-3p 91 114 -GGUC-GAGGUGCAGUC--CGGGUGC :||| ||||| || ||||| UUCAGCCUCCAG--CAACUGCCCAG- Bop1; Kiaa0124 mmu-miR-7b 60 89 -UUGUUUUAGUGUU-------CAGAAGGU ||:|:|||| || ||||||| CAAUAGAAUCCCAUUCUUCCUGUCUUCCU Bop1; Kiaa0124 mmu-miR-801 87 116 CAGCUAAGG-------CGU--GCGUGUCGUUAG :||||| ||| :|| |||| -CUGAUUCAGCCUCCAGCAACUGCCCAGCC--- Bop1; Kiaa0124 mmu-miR-9* 184 207 -UGAAAGCCAAUA-GAUCGAAAU- ||| ||| ||:|||||| CACUGA-GGUGUAACUGGCUUUAU Bop1; Kiaa0124 mmu-miR-485-5p 93 100 CUUA--------------------AGUAGUGCC-GGUCGGAGA || || :| :||||||| CUCAAUAGAAUCCCAUUCUUCCUGUCUUCCUGAUUCAGCCUCC Bop1; Kiaa0124 mmu-miR-7 81 88 --------------GUUGUUUUAGU----GAU---CAGAAGGU |||:|:|||| || ||||||| CCACACAGAAUCCUCAAUAGAAUCCCAUUCUUCCUGUCUUCCU Bop1; Kiaa0124 mmu-miR-742 198 205 AAA---------------UGGGUCGUACC------ACCGAAAG ||||| : || ||||||| UGGUAUUGAUACAAUGUCACCCACUGAGGUGUAACUGGCUUUA Bop1; Kiaa0124 mmu-miR-7b 81 88 ---------------UUGUUUUAGUGUU-------CAGAAGGU ||:|:|||| || ||||||| CCACACAGAAUCCUCAAUAGAAUCCCAUUCUUCCUGUCUUCCU Bop1; Kiaa0124 mmu-miR-10a 8 36 GUGUUUAAGCCUA---GA---UGUCCCAu ||| | | :||:| || | ||||| CACTACTCTGGGTGGCCTGGAAGAGGGTg Bop1; Kiaa0124 mmu-miR-149 133 154 ccucacuucugugccUCGGUCU ||||||| ccagaacctggcttaAGCCAGA Bop1; Kiaa0124 mmu-miR-17-3p 172 192 AUGUUCACGG-GAGUGACGUCA ||||| ||:| | ||||| :|| TACAA-TGTCACCCACTGAGGT Bop1; Kiaa0124 mmu-miR-201 169 192 uCU-UGUUAC-G-GAAUGACUCau || |||||| | | |||||| tGATACAATGTCACCCACTGAGgt Bop1; Kiaa0124 mmu-miR-204 15 36 GUCCGUAUCCUACUGUUUCCCuu | || :|:| ||: |:|||| CTGG-GTGGCCTGGAAGAGGGtg Bop1; Kiaa0124 mmu-miR-210 110 134 aGUCGGCGAC---AGUGUG-CGUGuc ||||| :|| |:|||| |||| cCAGCC-TTGACCTTACACAGCACcc Bop1; Kiaa0124 mmu-miR-217 76 97 uAGGUCAGUCAAGGACUACGUCau ||| ||| |||||||| ||| tTCCTGTC--TTCCTGATTCAGcc Bop1; Kiaa0124 mmu-miR-293 7 26 UGUGAUGUUUGAGACGCCGuga ||||||| || |:||| ACACTAC--TCTGGGTGGCctg Bop1; Kiaa0124 mmu-miR-31 100 122 GUCGAU-AC-GGUCGUAGAAC-GGA |||| | || ||||| |||| ||| CAGCAACTGCCCAGC--CTTGACCT Bop1; Kiaa0124 mmu-miR-320 91 118 AAGCGGGAG--AGUU---GGGUCGAAAa ||| |||| ||| |||||| || TTCAGCCTCCAGCAACTGCCCAGCCTTg Bop1; Kiaa0124 mmu-miR-329 27 44 uUUUUCCAAUCGACCCACACaa ||:||| | |||||||| gAAGAGG---G-TGGGTGTGcc Bop1; Kiaa0124 mmu-miR-34a 94 111 UUGUUGGUCGAUUCUGUGACGGu |:| ||||| | |||||| AGCCTCCAGC--A---ACTGCCc Bop1; Kiaa0124 mmu-miR-34b 89 112 gUUAGUCGAUUAAUG-UGACGGau | ||||| :| |||||| gATTCAGCCTCCAGCAACTGCCca Bop1; Kiaa0124 mmu-miR-34c 88 111 cgUUAGUCGAUUGAUG-UGACGGa | ||||| | :| |||||| tgATTCAGCCTCCAGCAACTGCCc Bop1; Kiaa0124 mmu-miR-431 14 33 gGACGUACUGCCGGACGUUCUgu ||| |::|||||| |||| tCTG---GGTGGCCTGGAAGAgg Bop1; Kiaa0124 mmu-miR-449 109 132 uGGUCG--AUUGUUAUGUGACGgu ||||| |:|| ||||| || cCCAGCCTTGACCTTACACAGCac Bop1; Kiaa0124 mmu-miR-449b 92 111 gGUCGAUCGUUACG-UGACGGa |||| || || |||||| tCAGCCTCCA--GCAACTGCCc Bop1; Kiaa0124 mmu-miR-463 204 224 acuACCUGUUGUUUAAUCCau |||:|||:|||||:|| tatTGGGCAATAAATTGGGgc Bop1; Kiaa0124 mmu-miR-469 5 35 ccUGUGGU----UCUAGU-UACUUUCUCCgu ||||:| :|:| : ||:|||||| acACACTACTCTGGGTGGCCTGGAAGAGGgt Bop1; Kiaa0124 mmu-miR-483 17 43 uguuCUG--CC--CUCCCCUCCUCACu |:| || ||||| :|| ||| gggtGGCCTGGAAGAGGGTGGGTGTGc Bop1; Kiaa0124 mmu-miR-484 23 47 uagCC--CUCCC-CUGACUCGGAcu || ||||| |: || |||| cctGGAAGAGGGTGGGTGTGCCTcc Bop1; Kiaa0124 mmu-miR-485-5p 78 100 cuuaAGUAGUGC-CGGUCGGAGa || || :| :||||||| cctgTCTTCCTGATTCAGCCTCc Bop1; Kiaa0124 mmu-miR-485-5p 95 122 cuuAAGUAGU--GCCGGUCGGAGA---- | || || :| |||||||: gccTCCAGCAACTGCCCAGCCTTGACCT Bop1; Kiaa0124 mmu-miR-491 26 52 ggaguaCCUUCCCA-----AGGGGUGa ||: |||| ||| ||| ggaagaGGGTGGGTGTGCCTCCACACa Bop1; Kiaa0124 mmu-miR-500 177 196 gacuUGGGAACGGGUCCACGUa |||| |: |||||:| tgtcACCC--ACTGAGGTGTAa Bop1; Kiaa0124 mmu-miR-541 51 73 acacUGGUUGUAGUCUUAGGGaa |:| || :|||||||| cagaATCCTCAATAGAATCCCat Bop1; Kiaa0124 mmu-miR-551b 22 41 guGACUUUGGUUCAUACCCAgc |||:|| :|| :||||| gcCTGGAA--GAGGGTGGGTgt Bop1; Kiaa0124 mmu-miR-592 155 177 uguaguagcguAUAACUGUGUUA ||||||:||||| agggaaggtggTATTGATACAAT Bop1; Kiaa0124 mmu-miR-667 18 43 gaACCCGACC--C-ACCGUCCACAgu ||| |||| | ||::||||| ggTGGCCTGGAAGAGGGTGGGTGTgc Bop1; Kiaa0124 mmu-miR-670 1 21 aaguGG-UGUAUG-UGAGUCCCua || ||| || |||| ||| ---gCCAACACACTACTCTGGGtg Bop1; Kiaa0124 mmu-miR-671 120 149 GGA--G-GUCGGGGAGGUC-----CCGAAgga ||| | |||| | |||| ||||| CCTTACACAGCAC--CCAGAACCTGGCTTaag Bop1; Kiaa0124 mmu-miR-671 96 122 GGAGGUCGGGGA-GGUCCCGAA--GGa |||||||| || || | ||| || CCTCCAGCAACTGCCCAGCCTTGACCt Bop1; Kiaa0124 mmu-miR-678 114 138 GGAGGUCAGGAA-----CGUGGCUCUg |||: | |||| ||||| ||| CCTT--GACCTTACACAGCACCCAGAa Bop1; Kiaa0124 mmu-miR-679 35 58 ugguuCUCAGUGGAGUGUC--AGG | | | || ||||| ||| tgggtGTGCCTCCACACAGAATCC Bop1; Kiaa0124 mmu-miR-685 93 119 caCGGAG-----UG--GAGUCGGUAACU ||||| || | ||||| |||| caGCCTCCAGCAACTGCCCAGCC-TTGA Bop1; Kiaa0124 mmu-miR-693-5p 27 46 CUUUUGAAAGCCUACACCGAc |||:| | ||:|||| || GAAGAGGGT-GGGTGTGCCTc Bop1; Kiaa0124 mmu-miR-695 91 116 AAGUCAGUGGAU----ACGGGUUAGA ||||| | || : ||||||: || TTCAGCCTCCAGCAACTGCCCAGCCT Bop1; Kiaa0124 mmu-miR-699 88 111 gCUCGGUC-CAG--CG-UGACGGa || :||| || || |||||| tGATTCAGCCTCCAGCAACTGCCc Bop1; Kiaa0124 mmu-miR-7 60 88 GUUGUUUUA--GU--GA---UCAGAAGGu |||:|:||| || || ||||||| CAATAGAATCCCATTCTTCCTGTCTTCCt Bop1; Kiaa0124 mmu-miR-702 17 40 CUCGCC---CCAUUUCCCACCCgu |:|:|| || |:|||||||| GGGTGGCCTGGAAGAGGGTGGGtg Bop1; Kiaa0124 mmu-miR-705 107 128 ACGGGUGGGG--UGGAGGGUGg |||||| ||: ||||: ||| TGCCCAGCCTTGACCTTACACa Bop1; Kiaa0124 mmu-miR-709 82 100 AGGAGGACGGAGACGGAGG ||:||||| :|| |||||| TCTTCCTGATTCAGCCTCC Bop1; Kiaa0124 mmu-miR-710 97 119 GA-GUUG-AGAGGGGUUCUGAACc || ||:| || ||| || |||| CTCCAGCAACTGCCC-AGCCTTGa Bop1; Kiaa0124 mmu-miR-714 102 121 CGCUGGCUGGCCGGGAGCAGc || ||:| || | |||:| | GCAACTGCCCAG-CCTTGACc Bop1; Kiaa0124 mmu-miR-715 11 29 gUGCGCCCCCACACGUGCCUc || | ||||| || :||| tACTC-TGGGTG-GCCTGGAa Bop1; Kiaa0124 mmu-miR-718 10 30 GCUGUGGGCCGGCCCG--CCUUC | || |: ||: ||| ||||| CTACTCTGGGT--GGCCTGGAAG Bop1; Kiaa0124 mmu-miR-742 178 205 aAAUGGGUCGUACC------ACCGAAAg | ||||| :: || ||||||| gTCACCCACTGAGGTGTAACTGGCTTTa Bop1; Kiaa0124 mmu-miR-742 128 148 aaaUGGGUCGUACCACCGAAag |||||| | |||||| agcACCCAG-AACCTGGCTTaa Bop1; Kiaa0124 mmu-miR-744 86 115 cGAC-AA-UCGG-----GAU--CGGGGCGu ||| || |||| | | |||| || cCTGATTCAGCCTCCAGCAACTGCCCAGCc Bop1; Kiaa0124 mmu-miR-762 90 117 cgAGACAG-GGCCG-----GGGUCGGgg || | | || || ||||||| atTCAGCCTCCAGCAACTGCCCAGCCtt Bop1; Kiaa0124 mmu-miR-762 113 142 CGAGACAGG-----GCCG-GGGUC--GGgg || :|| || | || ||||| || GCCTTGACCTTACACAGCACCCAGAACCtg Bop1; Kiaa0124 mmu-miR-764-3p 27 48 ugucaacggugauacCGGAGGa |||||| gaagagggtgggtgtGCCTCCa Bop1; Kiaa0124 mmu-miR-770-3p 92 114 gGUC-GAGGUGCAGU--CCGGGUgc ||| ||||| | || ||||| tCAGCCTCCA-G-CAACTGCCCAgc Bop1; Kiaa0124 mmu-miR-7b 61 88 UUGUUUUAGUGU-------UCAGAAGGu ||:|:|||| || ||||||| AATAGAATCCCATTCTTCCTGTCTTCCt Bop1; Kiaa0124 mmu-miR-801 86 107 cagCUAAGGCGUGCGUGUCGUUag ||||| || | | |||||| cctGATTCAGC-CTC-CAGCAAct

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bop1 RAID00090958 mmu-miR-7b-5p miRNA MIMAT0000678 Bop1 mRNA 12181 Prediction 0.2202 Bop1 RAID00396897 mmu-miR-449b miRNA MIMAT0005447 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID00776646 mmu-miR-7040-3p miRNA MIMAT0027985 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID00942553 mmu-miR-34c-5p miRNA MIMAT0000381 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID01655525 mmu-miR-374b-5p miRNA MIMAT0003727 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID01891409 mmu-miR-7078-5p miRNA MIMAT0028062 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID02322120 mmu-miR-698-5p miRNA MIMAT0022930 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID02397629 mmu-miR-6966-3p miRNA MIMAT0027835 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID02825241 mmu-miR-485-5p miRNA MIMAT0003128 Bop1 mRNA 12181 Prediction 0.1828 Bop1 RAID03045182 mmu-miR-7a-5p miRNA MIMAT0000677 Bop1 mRNA 12181 Prediction 0.2202