DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0000663 chr16 13697425 13699168 +

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT009319 mmu-miR-7b-5p Mus musculus Bfar 67118 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004525 mmu-miR-99b* 67118 Bfar gccUGGGU-GUCUGUGCUC-GAAc :|||| |||:| |||| ||| aauGCCCACCAGGC-CGAGUCUUc 2 20 836 858 [mm9:16:13703186-13703208:+] 0.4779 128 0 -23.56 -0.2341 MIMAT0000152 mmu-miR-140* 67118 Bfar ggCACCAAGAUG-GGACAC-CAu | ||| ||:| :||||| || gcGAGGUGCUGCUUCUGUGUGUc 2 20 94 116 [mm9:16:13702444-13702466:+] 0.6386 126 0 -21.77 -0.3250 MIMAT0004539 mmu-miR-183* 67118 Bfar aauaccgggaAGCCAUUAAGUg |:||||||||| ucagagagacUUGGUAAUUCAu 2 13 1237 1258 [mm9:16:13703587-13703608:+] 0.5684 156 7 -15.37 -0.3726 MIMAT0004546 mmu-miR-202-5p 67118 Bfar uuuCUUCAUAUACGU-AUCCUu ||| | |: ||| ||||| cuuGAA-UCUGAGCACUAGGAa 2 19 333 353 [mm9:16:13702683-13702703:+] 0.4883 120 0 -10.34 -0.4284 MIMAT0004574 mmu-miR-294* 67118 Bfar ucuaucccggagguAAAACUCa ||||||| acaggcagguggauUUUUGAGu 2 9 355 376 [mm9:16:13702705-13702726:+] 0.4947 140 7 -13.73 -0.4630 MIMAT0000375 mmu-miR-297a 67118 Bfar ugUACGUGUACGUGUGUAUGUa ||| |:| :: ||||||| auAUGGAUAGUUGGACAUACAa 2 21 648 669 [mm9:16:13702998-13703019:+] 0.6195 156 7 -14.52 -0.8577 MIMAT0004583 mmu-miR-130b* 67118 Bfar ucaucacgUUGUCCCUUUCUca || | |||||| aaaaaaaaAAAAAAGAAAGAaa 3 15 446 467 [mm9:16:13702796-13702817:+] 0.4993 126 0 -4.53 -0.1986 MIMAT0004583 mmu-miR-130b* 67118 Bfar ucaucacgUUGUCCCUUUCUca || | |||||| aagaaaagAAAAAAGAAAGAaa 3 15 472 493 [mm9:16:13702822-13702843:+] 0.4988 126 0 -4.53 -0.1863 MIMAT0004617 mmu-miR-148a* 67118 Bfar ucagcCUCACAGAGUCU-UGAAa ||| ||| ||| |||| aaggaGAGAGUCAGAGAGACUUg 2 18 1227 1249 [mm9:16:13703577-13703599:+] 0.4906 125 0 -14.07 -0.2866 MIMAT0004620 mmu-let-7a* 67118 Bfar ccUUUCUGUCAUCUAACA-UAUc ||:||:|| : |||| ||| gcAAGGAUAG-GUUUUGUCAUAg 2 21 626 647 [mm9:16:13702976-13702997:+] 0.6195 122 0 -15.15 -1.0097 MIMAT0004621 mmu-let-7b* 67118 Bfar ccCUUCCGU--C-AUCC--AACA-UAUc ||| ||| | |||| |||| ||| agGAAAGCAAGGAUAGGUUUUGUCAUAg 2 21 620 647 [mm9:16:13702970-13702997:+] 0.6195 121 0 -17.47 -1.0154 MIMAT0004622 mmu-let-7c-1* 67118 Bfar ccuuucgaucuuccaACAUGUc |||||| uugaauaauuuaaucUGUACAa 2 8 891 912 [mm9:16:13703241-13703262:+] 0.5335 120 6 -4.61 -0.2459 MIMAT0004622 mmu-let-7c-1* 67118 Bfar ccUUUCGAUCUUCCAACAUGUc ||| ||| || |||| auAAAAAAAGAUUUUUAUACAa 2 21 1328 1349 [mm9:16:13703678-13703699:+] 0.6462 120 0 -2.45 -0.2340 MIMAT0005439 mmu-let-7c-2* 67118 Bfar ccUUUCUGUCAUCUAACA-UAUc ||:||:|| : |||| ||| gcAAGGAUAG-GUUUUGUCAUAg 2 21 626 647 [mm9:16:13702976-13702997:+] 0.6195 122 0 -15.15 -1.0097 MIMAT0004623 mmu-let-7f* 67118 Bfar ccCUUCCGU---UAUCU--AACA-UAUc ||| ||| ||||: |||| ||| agGAAAGCAAGGAUAGGUUUUGUCAUAg 2 21 620 647 [mm9:16:13702970-13702997:+] 0.6195 122 0 -16.73 -1.0154 MIMAT0004629 mmu-miR-22* 67118 Bfar auuucgaacggugaCUUCUUga |||||| aaacaaaacaaaaaGAAGAAaa 3 9 497 518 [mm9:16:13702847-13702868:+] 0.4983 120 0 -6.27 -0.1199 MIMAT0004630 mmu-miR-26b* 67118 Bfar cucgGUUCAUUACCUCU-UGUCc :::||:| |||| |||| uguaUGGGUGAGAGAGAGACAGa 2 19 1185 1207 [mm9:16:13703535-13703557:+] 0.4906 122 0 -14.74 -0.5019 MIMAT0004631 mmu-miR-29a* 67118 Bfar gacuuguGGUUUUCUUU-AGUCa :||:|| ||| |||| guagguuUCAGAAUAAACUCAGa 2 16 714 736 [mm9:16:13703064-13703086:+] 0.4779 123 0 -10.85 -0.7849 MIMAT0004636 mmu-miR-93* 67118 Bfar gcccuUCACGAUCGAGUCGUCa |||| || |||||||| gacauAGUG-UA-CUCAGCAGa 2 18 1076 1095 [mm9:16:13703426-13703445:+] 0.5927 157 7 -19.09 -0.5685 MIMAT0004660 mmu-miR-19a* 67118 Bfar caucaCGUUGAUACGUUUUGau | || | |||||| aaaaaGAAAGAAAUCAAAACaa 3 18 481 502 [mm9:16:13702831-13702852:+] 0.4988 125 0 -5.09 -0.2028 MIMAT0005444 mmu-miR-218-2* 67118 Bfar gcgCCACGAACUGUCUUGGUAc | | | | : :||||||| aggGCUACAUAGAGGAACCAUg 2 20 418 439 [mm9:16:13702768-13702789:+] 0.4957 147 7 -18.91 -0.3018 MIMAT0004668 mmu-miR-138* 67118 Bfar gggaccacAACACU--UCAUCGGc || ||: ||||||| gaaggccaUUAUGGUCAGUAGCCc 2 15 528 551 [mm9:16:13702878-13702901:+] 0.4992 145 7 -15.22 -0.1665 MIMAT0000706 mmu-miR-362-5p 67118 Bfar uaAGUGUGGAUCC-AAGGUUCCUAa ||| |::|||| ||||||| agUCAAAUUUAGGAAAGCAAGGAUa 2 23 610 634 [mm9:16:13702960-13702984:+] 0.6195 161 7 -19.71 -0.8213 MIMAT0003387 mmu-miR-376a* 67118 Bfar ugaguaUCUUCCUCUUAGAUGg || | |||||||| cgagcgAGCCCGUGAAUCUACc 2 17 15 36 [mm9:16:13702365-13702386:+] 0.4444 148 7 -15.39 -0.4978 MIMAT0000742 mmu-miR-378* 67118 Bfar ugUGUCCUGGAC-CUCAGUC-CUc |||| | | ||||||| || agACAGAAGGAGAGAGUCAGAGAg 2 21 1221 1244 [mm9:16:13703571-13703594:+] 0.4906 123 0 -23.59 -0.2873 MIMAT0000744 mmu-miR-380-5p 67118 Bfar gcGUACAAGAUACC--AGUUGGUa ::||| : | || ||||||| ucUGUGUGUCAAGGCUUCAACCAg 2 21 107 130 [mm9:16:13702457-13702480:+] 0.6386 151 7 -15.37 -0.1974 MIMAT0001422 mmu-miR-434-3p 67118 Bfar uccUCAGCUCACUAC-CAAGUUu :|| || | || |||||| gcaGGUGGAUUUUUGAGUUCAAg 2 20 359 381 [mm9:16:13702709-13702731:+] 0.4947 123 6 -13.49 -0.1477 MIMAT0002105 mmu-miR-464 67118 Bfar auagaguGUCUUAUUUGAACCAu ||||: |:||||||| agagaguCAGAG-AGACUUGGUa 2 17 1231 1252 [mm9:16:13703581-13703602:+] 0.4906 158 7 -19.86 -0.4256 MIMAT0002109 mmu-miR-468 67118 Bfar gucUGUGUGCGU-GUA-GUCAGUAu | | || :| || ||||||| aauAAAGACCUAGAAUCCAGUCAUa 2 21 670 694 [mm9:16:13703020-13703044:+] 0.5870 146 7 -16.36 -0.8592 MIMAT0003127 mmu-miR-484 67118 Bfar uagcccUCCCCUGACUCG-GACu || |||||||| ||| cuucuuAGAUGACUGAGCACUGc 2 17 855 877 [mm9:16:13703205-13703227:+] 0.4761 128 0 -20.14 -0.2050 MIMAT0003728 mmu-miR-374* 67118 Bfar gagccUGUUACUAUUAUGUUgg | :|| | |||||| aaaaaAAGAUUUUUAUACAAau 3 18 1330 1351 [mm9:16:13703680-13703701:+] 0.6462 129 0 -5.88 -0.1655 MIMAT0003894 mmu-miR-764-5p 67118 Bfar uccucCUGUACACUCGUGg || || ||||||| accuuGA-AUCUGAGCACu 2 15 331 348 [mm9:16:13702681-13702698:+] 0.4883 148 7 -11.32 -0.2156 MIMAT0003894 mmu-miR-764-5p 67118 Bfar uccucCUGUACACUCGUGg ||:: ||||||| ucuuaGAUGACUGAGCACu 2 15 857 875 [mm9:16:13703207-13703225:+] 0.4761 146 7 -14.49 -0.1266 MIMAT0003739 mmu-miR-673-5p 67118 Bfar gaGGUUCCUGGUCUCGACACUc |::| |||| |||||||| acCUGACAACCA-AGCUGUGAc 2 21 34 54 [mm9:16:13702384-13702404:+] 0.4624 162 7 -19.72 -0.4257 MIMAT0003451 mmu-miR-677 67118 Bfar agUCUUCGAUUAGU-------AGUGACUu |||| | |:||| ||||||| cuAGAAUCCAGUCAUAGUUUCUCACUGAa 2 21 679 707 [mm9:16:13703029-13703057:+] 0.5162 147 7 -17.54 -0.7967 MIMAT0003461 mmu-miR-683 67118 Bfar cuccuguGUCG-AAUGUCGUcc :||: | |||||| uguucuuUAGUAUAACAGCAag 3 15 986 1007 [mm9:16:13703336-13703357:+] 0.5927 125 0 -10.77 -0.1118 MIMAT0003461 mmu-miR-683 67118 Bfar cuCCUGUGUCGAAUGUC-GUCc ||||| | | |||| ||| acGGACAGA-CGGACAGACAGa 2 20 1163 1183 [mm9:16:13703513-13703533:+] 0.4906 121 0 -16.73 -0.3620 MIMAT0003462 mmu-miR-684 67118 Bfar aacugaacuucCCUUUUGa ||||||| ucugagcacuaGGAAAACa 2 9 339 357 [mm9:16:13702689-13702707:+] 0.4915 140 7 -8.34 -0.4978 MIMAT0003471 mmu-miR-692 67118 Bfar cucACUCCGCGAGUUUCUCUa || | | :||||||||| agcUGUGACAUUCAAAGAGAc 2 19 46 66 [mm9:16:13702396-13702416:+] 0.4624 162 7 -16.33 -0.1330 MIMAT0003476 mmu-miR-669b 67118 Bfar uguacgUGUACGUGUGUUUUGa | || | ||||||| agaaagAAAUCAAAACAAAACa 2 17 485 506 [mm9:16:13702835-13702856:+] 0.4988 148 7 -7.67 -1.2528 MIMAT0003480 mmu-miR-297b-5p 67118 Bfar ugUACAAGUACGUGUGUAUGUa ||| :| :: ||||||| auAUGGAUAGUUGGACAUACAa 2 21 648 669 [mm9:16:13702998-13703019:+] 0.6195 148 7 -11.84 -0.8577 MIMAT0003496 mmu-miR-706 67118 Bfar aaaaaacUCUGUCCCAAAGAGa || || ||||||| agaauccAGUCAUAGUUUCUCa 2 16 681 702 [mm9:16:13703031-13703052:+] 0.5545 151 7 -9.87 -0.9673 MIMAT0003498 mmu-miR-708* 67118 Bfar gaUCUUCGAGUGUCAG-AUCAAc |||| || ||||| ||||| cuAGAA--UC-CAGUCAUAGUUu 2 21 679 698 [mm9:16:13703029-13703048:+] 0.5545 127 0 -17.93 -0.4776 MIMAT0003500 mmu-miR-710 67118 Bfar gaguugagAGGGGUUCUGAACc || :||||||| ggagagagUCAGAGAGACUUGg 2 15 1229 1250 [mm9:16:13703579-13703600:+] 0.4906 142 7 -16.22 -0.1814 MIMAT0003508 mmu-miR-501-5p 67118 Bfar aaaguggguccCUGUUUCCUAa | :||||||| guauggaguaaGCUAAAGGAUg 2 12 1037 1058 [mm9:16:13703387-13703408:+] 0.5927 143 7 -9.35 -0.3501 MIMAT0003511 mmu-miR-450b-5p 67118 Bfar auAAGUCC-UUGUAUGAC-GUUUu || :|| :||||:||| |||| auUUGGGGUGACAUGCUGUCAAAa 2 21 277 300 [mm9:16:13702627-13702650:+] 0.4850 135 0 -20.42 -0.1401 MIMAT0004844 mmu-miR-880 67118 Bfar agaugAGUCUCUCCUACCUCAu ||| | || ||||||| ugccaUCAUA-AGUAUGGAGUa 2 18 1026 1046 [mm9:16:13703376-13703396:+] 0.5927 155 7 -14.44 -0.8210 MIMAT0004865 mmu-miR-297c 67118 Bfar ugUACAUGUACGUGUGUAUGUa ||| |:| :: ||||||| auAUGGAUAGUUGGACAUACAa 2 21 648 669 [mm9:16:13702998-13703019:+] 0.6195 156 7 -12.48 -0.8542 MIMAT0004877 mmu-miR-466c-5p 67118 Bfar auACAUGU-ACGUGUGUGUG-UAg |||| : ||| | ||||| || uuUGUAAGCUGCCCUCACACUAUa 2 21 943 966 [mm9:16:13703293-13703316:+] 0.5927 127 0 -12.50 -0.7633 MIMAT0004883 mmu-miR-466g 67118 Bfar acacacacguacacAGACAUa |||||| uuugaauaauuuaaUCUGUAc 2 8 890 910 [mm9:16:13703240-13703260:+] 0.5335 120 6 -5.59 -0.1083 MIMAT0004892 mmu-miR-568 67118 Bfar cacacaUAUGUAAAUAUGUa | |: |||||||| aaaaaaAGAUUUUUAUACAa 2 15 1330 1349 [mm9:16:13703680-13703699:+] 0.6462 150 7 -5.23 -1.3373 MIMAT0004862 mmu-miR-877* 67118 Bfar acCCUCCUCCCUC-UUCUC-CUGu | ||||| ||| |||| ||| caGAAGGAGAGAGUCAGAGAGACu 2 21 1224 1247 [mm9:16:13703574-13703597:+] 0.4906 131 0 -21.47 -0.4273 MIMAT0004862 mmu-miR-877* 67118 Bfar acCCUCCUCCCUCUUCUC-CUGu | | |:| ||| |||| ||| auGUAUGGGUGAG-AGAGAGACa 2 21 1184 1205 [mm9:16:13703534-13703555:+] 0.4906 122 0 -19.06 -0.4237 MIMAT0005293 mmu-miR-467e 67118 Bfar uguAUAUGU-AC--GAGUGUGA-AUa |:|| : || |||||||| || uuuUGUAAGCUGCCCUCACACUAUAu 2 20 942 967 [mm9:16:13703292-13703317:+] 0.5927 121 0 -12.65 -0.6543 MIMAT0007868 mmu-miR-1903 67118 Bfar acagaguccUUCUUCUUCUUcc || |||||||| aaacaaaacAAAAAGAAGAAaa 3 14 497 518 [mm9:16:13702847-13702868:+] 0.4983 137 0 -9.06 -0.1152 MIMAT0007873 mmu-miR-1896 67118 Bfar gaggaguggguggUAGUCUCUc :||||||| acagaaggagagaGUCAGAGAg 2 10 1223 1244 [mm9:16:13703573-13703594:+] 0.4906 141 7 -14.82 -0.1856 MIMAT0007873 mmu-miR-1896 67118 Bfar gaggagugggugguAGUCUCUc ||||||| guuucagaauaaacUCAGAGAa 2 9 718 739 [mm9:16:13703068-13703089:+] 0.4779 140 7 -13.46 -0.7112 MIMAT0007876 mmu-miR-1907 67118 Bfar uggaggucuaggagACGACGAg ||||||| cugguaaugcgaggUGCUGCUu 2 9 86 107 [mm9:16:13702436-13702457:+] 0.6386 140 7 -13.62 -0.1369 MIMAT0009405 mmu-miR-1941-5p 67118 Bfar uucGGAGACA-UGGUCGUA-GAGGGa |||| | ||:: ||| ||||| uaaCCUCACUAACUGACAUACUCCCa 2 22 552 577 [mm9:16:13702902-13702927:+] 0.5598 128 0 -20.95 -0.7572 MIMAT0009416 mmu-miR-1949 67118 Bfar uugauacgACUGU-AGGACCA-UAUc ||| | ||:|||| ||| aauagaagUGAAAGUCUUGGUCAUAa 2 17 252 277 [mm9:16:13702602-13702627:+] 0.5208 123 0 -11.98 -0.5533 MIMAT0009433 mmu-miR-1960 67118 Bfar ucGGGAGAA--GAUUG--UCGUGACc :|:|||| |:|| ||||||| agUCUUCUUAGAUGACUGAGCACUGc 2 21 852 877 [mm9:16:13703202-13703227:+] 0.4761 154 7 -24.38 -0.1110 MIMAT0009436 mmu-miR-1963 67118 Bfar cuUCCGGAGUACUAG----AG-CAGGGu ||||:|| ||: | || ||||| ccAGGCUUCUUGGGCCAGGUCUGUCCCa 2 22 580 607 [mm9:16:13702930-13702957:+] 0.6195 124 0 -26.87 -0.1942 MIMAT0009456 mmu-miR-1839-5p 67118 Bfar guucUGGACAAGAUAGAUGGAa :|| | | |||||||| gcgaGCCCG-UGAAUCUACCUg 2 19 18 38 [mm9:16:13702368-13702388:+] 0.4444 148 7 -21.11 -0.1579 MIMAT0009460 mmu-miR-1982.1 67118 Bfar gacacccUCUUGUAU-CCCACUCu ||||::|| ||||||| gacagacAGAAUGUAUGGGUGAGa 2 17 1174 1197 [mm9:16:13703524-13703547:+] 0.4906 163 7 -21.85 -0.8433 MIMAT0009461 mmu-miR-1982.2 67118 Bfar gacacccUCUUGUAU-CCCACu ||||::|| ||||| gacagacAGAAUGUAUGGGUGa 2 15 1174 1195 [mm9:16:13703524-13703545:+] 0.4906 126 0 -16.95 -0.3941 MIMAT0015641 mmu-miR-3470b 67118 Bfar ggUCGGACCAGAUGUCUCACu || |||||||||||||| ccAGAGUGGUCUACAGAGUGa 2 20 383 403 [mm9:16:13702733-13702753:+] 0.4952 179 7 -37.22 -0.5022 MIMAT0015641 mmu-miR-3470b 67118 Bfar ggucGGACCAGA-UGUCUCACu |:| || | ||||||| aacuCUUUGUAUCUCAGAGUGa 2 18 1260 1281 [mm9:16:13703610-13703631:+] 0.6462 148 7 -18.71 -1.2107 MIMAT0015646 mmu-miR-3474 67118 Bfar cuUA-GGU--GCAGAGGA-GGGUCCc || ||| :| || || |||||| ccAUGCCAGCUGACUGCUACCCAGGu 2 21 155 180 [mm9:16:13702505-13702530:+] 0.4759 122 6 -22.09 -0.1291 MIMAT0000124 mmu-miR-15b 67118 Bfar acauuUGGUACUACACGACGAu | :: || |||||||| cugguAAUGCGAGGUGCUGCUu 2 18 86 107 [mm9:16:13702436-13702457:+] 0.6386 153 7 -17.84 -0.1355 MIMAT0000125 mmu-miR-23b 67118 Bfar ccauuagggaccgUUACACUa ||||||| ucagcagauguagAAUGUGAg 2 9 1088 1108 [mm9:16:13703438-13703458:+] 0.5927 140 7 -8.11 -0.1313 MIMAT0000142 mmu-miR-9 67118 Bfar aguaugUCGAU-CUAUUGGUU-UCu :|||| ||:||||| || ggcucaGGCUACUAUGACCAAUAGa 2 18 233 257 [mm9:16:13702583-13702607:+] 0.5716 124 0 -16.22 -0.8595 MIMAT0000148 mmu-miR-136 67118 Bfar gguAGUAGUUUUGU-UUACCUca ||| || |:| |||||| cccUCA-CACUAUAUAAUGGAca 3 20 954 975 [mm9:16:13703304-13703325:+] 0.5927 132 0 -11.84 -0.1743 MIMAT0000148 mmu-miR-136 67118 Bfar gguAGUAGUUU-UGU-UUAC-CUCa ||| ||:| ::| |||| ||| uacUCAGCAGAUGUAGAAUGUGAGc 2 20 1085 1109 [mm9:16:13703435-13703459:+] 0.5927 121 0 -12.38 -0.4085 MIMAT0000209 mmu-miR-129-5p 67118 Bfar cguucgggucuggcGUUUUUc |||||| aaaucaaaacaaaaCAAAAAg 2 8 491 511 [mm9:16:13702841-13702861:+] 0.4983 120 6 -7.92 -0.1053 MIMAT0000225 mmu-miR-195 67118 Bfar cgGUUAUAAAG--ACACGACGAu :::|| | | |||||||| ccUGGUAAUGCGAGGUGCUGCUu 2 20 85 107 [mm9:16:13702435-13702457:+] 0.6386 146 7 -17.50 -0.1369 MIMAT0000526 mmu-miR-15a 67118 Bfar guguuugguaaUACACGACGAu | |||||||| cugguaaugcgAGGUGCUGCUu 2 12 86 107 [mm9:16:13702436-13702457:+] 0.6386 147 7 -14.84 -0.1369 MIMAT0000527 mmu-miR-16 67118 Bfar gcGGUUAUAA--AUGCACGACGAu |:::|| | | |||||||| ccCUGGUAAUGCGAGGUGCUGCUu 2 21 84 107 [mm9:16:13702434-13702457:+] 0.6386 151 7 -20.00 -0.1369 MIMAT0000532 mmu-miR-23a 67118 Bfar ccuuuagggaccgUUACACUa ||||||| ucagcagauguagAAUGUGAg 2 9 1088 1108 [mm9:16:13703438-13703458:+] 0.5927 140 7 -8.26 -0.1313 MIMAT0000533 mmu-miR-26a 67118 Bfar ucggaUAGGACC---UAAUGAACUu | ::||| ||||||||| uugaaAGUUUGGAAAAUUACUUGAa 2 18 1303 1327 [mm9:16:13703653-13703677:+] 0.6462 152 7 -16.08 -1.3057 MIMAT0000534 mmu-miR-26b 67118 Bfar uggauaggacUUAAUGAACUu |||||||||| aaguuuggaaAAUUACUUGAa 2 12 1307 1327 [mm9:16:13703657-13703677:+] 0.6462 155 7 -14.04 -1.3057 MIMAT0000548 mmu-miR-322 67118 Bfar agguuUUGUACUUAACGACGAc ||:: ||: ||||||| cugguAAUGCGAGGUGCUGCUu 2 18 86 107 [mm9:16:13702436-13702457:+] 0.6386 157 7 -14.57 -0.1369 MIMAT0004651 mmu-miR-340-5p 67118 Bfar uuagucagaguaacGAAAUAUu :|||||| aaauaaaaaaagauUUUUAUAc 2 9 1326 1347 [mm9:16:13703676-13703697:+] 0.6462 124 6 -2.63 -0.1392 MIMAT0004651 mmu-miR-340-5p 67118 Bfar uuAGUCAGAGUAACGAAAU-AUu |:| ||| :|| ||||| || cuUUAUUCU-GUU-CUUUAGUAu 2 21 978 998 [mm9:16:13703328-13703348:+] 0.5927 120 0 -4.21 -0.6362 MIMAT0000659 mmu-miR-212 67118 Bfar accggCACUGACCUCUGA-CAAu | ||| |:|||| ||| ucaaaGAGACAAGGGACUCGUUu 2 18 57 79 [mm9:16:13702407-13702429:+] 0.5505 121 0 -13.53 -0.1010 MIMAT0000664 mmu-miR-219 67118 Bfar ucuuaacgcaaACCUGUUAGu ||||||||| acacuauauaaUGGACAAUCu 2 11 959 979 [mm9:16:13703309-13703329:+] 0.5927 150 7 -13.53 -0.9049 MIMAT0000665 mmu-miR-223 67118 Bfar accccauaaACUGUUUGACUGu | || ||||||| gcccuaaccUCACUAACUGACa 2 14 548 569 [mm9:16:13702898-13702919:+] 0.5000 149 7 -11.72 -0.4809 MIMAT0000671 mmu-miR-224 67118 Bfar uugccuuggugaucACUGAAu |||||| ucagagugaagauuUGACUUa 2 8 1273 1293 [mm9:16:13703623-13703643:+] 0.6462 120 6 -9.60 -0.1088 MIMAT0000747 mmu-miR-382 67118 Bfar gcUUAGGUGGUGCUUGUU-GAAg | | :|: |:|:|||| ||| acACUAUAUAAUGGACAAUCUUu 2 21 959 981 [mm9:16:13703309-13703331:+] 0.5927 124 0 -14.87 -0.9059 MIMAT0001076 mmu-miR-384-3p 67118 Bfar uaACACUUGUUAAAGAUCCUUa | |||:|| ||||||| aaUCUGAGCA----CUAGGAAa 2 21 337 354 [mm9:16:13702687-13702704:+] 0.4883 147 7 -13.63 -0.5817 MIMAT0001095 mmu-miR-370 67118 Bfar uggucCAAGGUGGGGUC-GUCCg ||||:|| ||| |||| agugaGUUCUACAACAGCCAGGg 2 18 399 421 [mm9:16:13702749-13702771:+] 0.4957 129 0 -22.54 -0.2541 MIMAT0003893 mmu-miR-761 67118 Bfar acacAGUCAAAGUGGGA-CGACg |||| |:: ||| |||| cucaUCAGCCUUGGCCUGGCUGa 2 19 1109 1131 [mm9:16:13703459-13703481:+] 0.5927 122 0 -17.65 -0.2112 MIMAT0003453 mmu-miR-497 67118 Bfar auguuUGGUGUCACACGACGAc | ::|: |||||||| cugguAAUGCGAGGUGCUGCUu 2 18 86 107 [mm9:16:13702436-13702457:+] 0.6386 149 7 -16.60 -0.1369 MIMAT0003456 mmu-miR-495 67118 Bfar uuCUUCACGUGGUACAA-ACAAa | | ||| : ||||| |||| gaGCACUGCUUGAUGUUGUGUUu 2 21 869 891 [mm9:16:13703219-13703241:+] 0.4742 128 0 -11.59 -0.3858 MIMAT0004852 mmu-miR-190b 67118 Bfar uuGGGUUAUAGUUUGUAU-AGu |:|| || | :||||| || acCUCACUAACUGACAUACUCc 2 20 554 575 [mm9:16:13702904-13702925:+] 0.5000 127 0 -8.09 -0.3618 MIMAT0004854 mmu-miR-876-5p 67118 Bfar aucacuaagUGUCUCUUUAGgu | | ||||||| aaagaaaaaAGAAAGAAAUCaa 3 14 476 497 [mm9:16:13702826-13702847:+] 0.4988 129 0 -7.29 -0.2105 MIMAT0004896 mmu-miR-590-3p 67118 Bfar ugaucgaauauguaUUUUAAu |||||| cauugaaaguuuggAAAAUUa 2 8 1301 1321 [mm9:16:13703651-13703671:+] 0.6462 120 6 -8.09 -0.1236

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061718 G117526 Bfar Mus musculus 67118 19536157 0 0 R47451; MOUSE$BFAR_01; Binding factors: mmu-miR-19a-3p , mmu-miR-19b-3p // 0 0 R47452; MOUSE$BFAR_02; Binding factors: mmu-miR-106a-5p , mmu-miR-17-5p , mmu-miR-20b-5p , mmu-miR-93-5p // 0 0 R47460; MOUSE$BFAR_03; Binding factors: mmu-miR-26a-5p , mmu-miR-26b-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Bfar mmu-miR-692 beg:47 end:66 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& |||| | .||||||||| &5' --GTGA--CATTCAAAGAGA- 3' Bfar mmu-miR-223 beg:556 end:570 pic:3' ACCCCATAAACTGTTTGACTGT 5'& || |||||||| &5' -----------ACTAACTGACA 3' Bfar mmu-miR-376astar beg:23 end:37 pic:3' TGAGTATCTTCCTCTTAGATGG 5'& | ||||||||| &5' -----------GTGAATCTACC 3' Bfar mmu-miR-464 beg:1235 end:1253 pic:3' ATAGAGTGTCTTATTTGAACCAT 5'& ||||. |.|||||||| &5' -------CAGAG-AGACTTGGTA 3' Bfar mmu-miR-138star beg:536 end:551 pic:3' GGGACCACAACACTTCATCGGC 5'& |||| ||||||| &5' ---TGGTC------AGTAGCC- 3' Bfar mmu-miR-880 beg:1028 end:1047 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& ||| || |||||||| &5' -----TCATA-AGTATGGAGTA 3' Bfar mmu-miR-3470b beg:380 end:404 pic:3' GGTCGGACCAGATGTCTCACT 5'& |||| ||||||||||||||| &5' CCAGAGTGGTCTACAGAGTGA 3' Bfar mmu-miR-468 beg:684 end:695 pic:3' GTCTGTGTGCGTGTAGTCAGTAT 5'& |||||||| &5' ---------------CAGTCATA 3' Bfar mmu-miR-384-3p beg:338 end:354 pic:3' TAACACTTGTTAAAGATCCTTA 5'& |||.|| ||||||| &5' ----TGAGCA----CTAGGAA- 3' Bfar mmu-miR-219 beg:967 end:979 pic:3' TCTTAACGCAAACCTGTTAGT 5'& ||||||||| &5' -----------TGGACAATC- 3' Bfar mmu-miR-1982.1 beg:1178 end:1198 pic:3' GACACCCTCTTGTAT-CCCACTCT 5'& ||||..|| |||||||| &5' -------AGAATGTATGGGTGAGA 3' Bfar mmu-miR-706 beg:685 end:702 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& || || ||||||| &5' -------AGTCATAGTTTCTC- 3' Bfar mcmv-miR-m01-1 beg:791 end:813 pic:3' GGCAAGCTGCAA--TAAGAGGAGA 5'& || || .|||||||. &5' ---TTGGAAATTGGGTTCTCCTT- 3' Bfar mcmv-miR-m108-1 beg:1223 end:1244 pic:3' GCTGTG-CTCGGTGGCAGTCTTT 5'& || ||| ||||||.| &5' -GAAGGAGAGA----GTCAGAGA 3' Bfar mcmv-miR-m108-2-3p beg:594 end:615 pic:3' TGGCCAGTGAGCAGA--GCTCAGTG 5'& |||| .||| .|||||| &5' ---GGTC---TGTCCCATGAGTCA- 3' Bfar mcmv-miR-m59-1 beg:160 end:174 pic:3' GACTGCCAGCTCCG--TGACGATT 5'& || ||||||| &5' ------------GCTGACTGCTA- 3' Bfar mcmv-miR-m88-1star beg:524 end:545 pic:3' GGCTACAGTCCCCCA--GCCAGTA 5'& | ||| .||||| &5' -----GGAAGGCCATTATGGTCA- 3' Bfar mghv-miR-M1-6 beg:671 end:700 pic:3' TTTTGGT-----GGAGTGTGTCAAAGT 5'& ||.||| || ||.|||||| &5' AAGACCTAGAATCCAGTCATAGTTTC- 3' Bfar mmu-let-7astar beg:1195 end:1216 pic:3' CCTTTCTGTCATCTAACATATC 5'& ||.|||||| ||| ||.| &5' -GAGAGACAG-AGACA--ATGG 3' Bfar mmu-let-7c-2star beg:1195 end:1216 pic:3' CCTTTCTGTCATCTAACATATC 5'& ||.|||||| ||| ||.| &5' -GAGAGACAG-AGACA--ATGG 3' Bfar mmu-miR-101astar beg:850 end:871 pic:3' CGTAGTCGTGACACTATTGACT 5'& .|| || |||.||||| &5' --GTCTT--CTTAGATGACTGA 3' Bfar mmu-miR-103 beg:281 end:296 pic:3' AGTATCGGGACATGTTACGACGA 5'& ||. ||||||. &5' ----------GTGACATGCTGT- 3' Bfar mmu-miR-105 beg:328 end:352 pic:3' TGGTGTTCG-TAGACTCGTGAACC 5'& ||| ||||||||||| || &5' --CACCTTGAATCTGAGCACTAGG 3' Bfar mmu-miR-106a beg:926 end:947 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||| ||||.|||| &5' ----CTGATCAAGGAGCATTTTG 3' Bfar mmu-miR-107 beg:281 end:296 pic:3' ACTATCGGGACATGTTACGACGA 5'& ||. ||||||. &5' ----------GTGACATGCTGT- 3' Bfar mmu-miR-1188 beg:947 end:965 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& ||. ||||||||.| &5' -----GCTGC-CCTCACACTA 3' Bfar mmu-miR-1191 beg:415 end:434 pic:3' ATCCCGATGTATCATTCTGAC 5'& |||||||||||| |.|| &5' -AGGGCTACATAG-AGGA--- 3' Bfar mmu-miR-1196 beg:346 end:369 pic:3' TCCG--TCTCCGTCCATCTAAA 5'& ||| | ||||||||.||||| &5' AGGAAAACAGGCAGGTGGATTT 3' Bfar mmu-miR-1199 beg:219 end:240 pic:3' GGCGCGCTG-GC-C-CTGAGTCT 5'& | ||| .| | |.|||||. &5' ----GGGACTTGAGAGGCTCAGG 3' Bfar mmu-miR-124star beg:800 end:825 pic:3' TAGTTCCAGGC----GACACTTGTGC 5'& .|||.| ||||||.||.| &5' ----GGGTTCTCCTTCTGTGAGCATG 3' Bfar mmu-miR-1274a beg:208 end:231 pic:3' ACCGCGGACT--TGTCCCTGGACT 5'& |.|| ||||||||.||| &5' ----GTCTTCTTACAGGGACTTGA 3' Bfar mmu-miR-128 beg:35 end:54 pic:3' TTTCTCTGGCCAAGTGACACT 5'& ||| .|||||| &5' -----GACAACCAAGCTGTGA 3' Bfar mmu-miR-130a beg:1284 end:1306 pic:3' TACGGGAAAATTGTAACGTGAC 5'& || ||| ||| |||||.|| &5' -TGA-CTTA-AACTTTGCATTG 3' Bfar mmu-miR-130bstar beg:1202 end:1223 pic:3' TCATCAC-GTTGTCCCTTTCTCA 5'& || | |||. ||||.|||| &5' ---AGAGACAAT-GGGAGAGAG- 3' Bfar mmu-miR-130bstar beg:1214 end:1238 pic:3' TCATCACGTTGTC--CCTTTCTCA 5'& || | |||| |||.||||| &5' ---AGAGAGACAGAAGGAGAGAGT 3' Bfar mmu-miR-134 beg:675 end:695 pic:3' GGGGAGACCAGTTGGTCAGTGT 5'& ||| |||||||.| &5' --CCTAGAAT---CCAGTCATA 3' Bfar mmu-miR-135b beg:524 end:537 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& |.||.||||| &5' ------------GGAAGGCCAT- 3' Bfar mmu-miR-135b beg:214 end:239 pic:3' AGTGTATCCTT-ACTTTTCG-GTAT 5'& |.||| .||| |||.|.|| || &5' TTACA-GGGACTTGAGAGGCTCA-- 3' Bfar mmu-miR-138 beg:145 end:166 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& .||| ||| |..|||||| &5' ---TCTGG--CACCATGCCAGCT 3' Bfar mmu-miR-139-3p beg:427 end:446 pic:3' GAGGTTGTCCC-GGCGCAGAGGT 5'& ||| || .|||||.| &5' -------AGGAACCATGTCTCTA 3' Bfar mmu-miR-142-3p beg:1298 end:1323 pic:3' AGGTA--TTTCAT-CCTTTGTGATGT 5'& ||| ||||| ||||| |.||| &5' --CATTGAAAGTTTGGAAA-ATTAC- 3' Bfar mmu-miR-145star beg:206 end:226 pic:3' GTTCTTGTCATAAAG--GTCCTTA 5'& |||| ||||.| &5' ------CAGTCTTCTTACAGGGA- 3' Bfar mmu-miR-146a beg:793 end:811 pic:3' TTGGGTACC-TTAAGTCAAGAGT 5'& ||| |||| .|||||| &5' ------TGGAAATTGGGTTCTC- 3' Bfar mmu-miR-149 beg:1223 end:1242 pic:3' CCCTCACTTCTGTGC-CTCGGTCT 5'& ||||. | |||.|||| &5' ------GAAGGA--GAGAGTCAGA 3' Bfar mmu-miR-150 beg:1203 end:1220 pic:3' GTGACCATGTTCCCAACCCTCT 5'& | |||| ||||||| &5' ----GAGACAA----TGGGAGA 3' Bfar mmu-miR-152 beg:1296 end:1307 pic:3' GGTTCAAGACAGTACGTGACT 5'& ||||.||| &5' -------------TGCATTGA 3' Bfar mmu-miR-15a beg:96 end:107 pic:3' GTGTTTGGTAATACACGACGAT 5'& |||||||| &5' -------------GTGCTGCT- 3' Bfar mmu-miR-15b beg:86 end:107 pic:3' ACATT-TGGTACTACACGACGAT 5'& |||| .| | |||||||| &5' -GTAATGCGAG---GTGCTGCT- 3' Bfar mmu-miR-16 beg:85 end:107 pic:3' GCGGTTATAAATGCACGACGAT 5'& | .|||. | |||||||| &5' -GGTAATGCG-AGGTGCTGCT- 3' Bfar mmu-miR-17 beg:1292 end:1314 pic:3' GATG-GACGTGACATTCGTGAAAC 5'& || .||||.|| |||. ||| &5' --ACTTTGCATTGAAAGT---TTG 3' Bfar mmu-miR-17 beg:925 end:947 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||| .||||.|||| &5' ----CTGATCAAGGAGCATTTTG 3' Bfar mmu-miR-1839-5p beg:16 end:38 pic:3' GTTCTGGACAAGATAGATGGAA 5'& |.|| || || |||||||| &5' CGAG-CCCGTGA-ATCTACCT- 3' Bfar mmu-miR-1896 beg:1233 end:1245 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& .|||||||| &5' -------------GTCAGAGAG 3' Bfar mmu-miR-1896 beg:718 end:739 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& || |. || ||||||| &5' -TCAGAATAAAC--TCAGAGA- 3' Bfar mmu-miR-1897-5p beg:40 end:63 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& || || |||.||||| &5' -CCAAGCTGTGA-CATTCAAAG 3' Bfar mmu-miR-1898 beg:1106 end:1126 pic:3' CTAGGGGACACTTGGAACTGGA 5'& |.| |.|||||.||| &5' ---CTCATC--AGCCTTGGCCT 3' Bfar mmu-miR-1929 beg:668 end:685 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||||| ||||||| &5' ---------ATAAAGACCTAGAA 3' Bfar mmu-miR-1931 beg:1283 end:1304 pic:3' CGGTAGCGTGGTCG-GGAACGTA 5'& |.| ||. |.|||||| &5' ----TTG-ACTTAAACTTTGCAT 3' Bfar mmu-miR-1934 beg:576 end:599 pic:3' TCTCCTGCTTCGTCC--CCTGGTCT 5'& || |.|| ||.||||. &5' -----ACCAGGCTTCTTGGGCCAGG 3' Bfar mmu-miR-193star beg:660 end:682 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& ||| .|||||||.| &5' -CATACAAAA--TAAAGACCTA 3' Bfar mmu-miR-1950 beg:1081 end:1102 pic:3' ACTGGTAT-AGGAATCTACGTCT 5'& .|| || |||||.||| &5' -----GTACTCAGCAGATGTAGA 3' Bfar mmu-miR-195 beg:85 end:107 pic:3' CGGTTATAAAGA--CACGACGAT 5'& | .|| | |||||||| &5' -CTGGTAATGCGAGGTGCTGCT- 3' Bfar mmu-miR-1957 beg:686 end:706 pic:3' CAGTATACGAGATGGTGAC 5'& |||||| |.|. .||||| &5' GTCATA-GTTTC-TCACTG 3' Bfar mmu-miR-1960 beg:854 end:877 pic:3' TCGGGAGAAG--ATTG--TCGTGACC 5'& |.|||| |.|| ||||||| &5' ---CTTCTTAGATGACTGAGCACTG- 3' Bfar mmu-miR-1970 beg:40 end:57 pic:3' GTTTCGGATAGGGGT--CACTGTGT 5'& || ||||||. &5' ----------CCAAGCTGTGACAT- 3' Bfar mmu-miR-1982.2 beg:267 end:288 pic:3' GACACCCTC-TTGTATCCCACT 5'& ||| ||. |.|||||| &5' ---TGGTCATAATTTGGGGTGA 3' Bfar mmu-miR-1982star beg:557 end:579 pic:3' GGAGGGGTCCTGG--GAGGGTT 5'& || |. ||| ||||||| &5' -CTAACT--GACATACTCCCAA 3' Bfar mmu-miR-1983 beg:1174 end:1197 pic:3' TCTTTTGTACGAGGTCCACTC 5'& ||| |||. ..|||||| &5' AGACAGAATGTA-TGGGTGAG 3' Bfar mmu-miR-1983 beg:347 end:367 pic:3' TCTTTTGTACGAGGTCCACTC 5'& .||||||| ||||||. &5' GGAAAACAGG---CAGGTGG- 3' Bfar mmu-miR-199a-5p beg:781 end:798 pic:3' CTTGTCCATCAG-ACTTGTGACCC 5'& ||. |||.||.||| &5' ---------GTTATGAGCATTGG- 3' Bfar mmu-miR-19astar beg:100 end:123 pic:3' CATCACGTTGATAC---GTTTTGAT 5'& ||| ||.|| |||..|| &5' ----TGCTTCTGTGTGTCAAGGCT- 3' Bfar mmu-miR-203star beg:427 end:439 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& |.||||||. &5' ------------AGGAACCAT- 3' Bfar mmu-miR-20a beg:925 end:947 pic:3' GATGGACGTGATATTCGTGAAAT 5'& ||| .||||.|||. &5' ----CTGATCAAGGAGCATTTTG 3' Bfar mmu-miR-20b beg:925 end:947 pic:3' GATGGACGTGATACTCGTGAAAC 5'& ||| |||||.|||| &5' ----CTGATCAAGGAGCATTTTG 3' Bfar mmu-miR-2135 beg:570 end:590 pic:3' CAAAGCCGGGGT----TCTGGAGA 5'& .|||| ||.|.||| &5' -------TCCCAAACCAGGCTTCT 3' Bfar mmu-miR-2136 beg:192 end:208 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& .|||||.|||||| &5' --------GGTCAATACCCAG 3' Bfar mmu-miR-214star beg:341 end:365 pic:3' CGTG-TCGTTCACATCTGTCCGT 5'& |||| || || ||.||||. &5' GCACTAGGAAAAC-AGGCAGGT- 3' Bfar mmu-miR-218-2star beg:418 end:440 pic:3' GCGCCACGAACTG---TCTTGGTAC 5'& || ||| .|||||||| &5' ---GG-GCTACATAGAGGAACCATG 3' Bfar mmu-miR-26a beg:1307 end:1328 pic:3' TCGGATAGGACCT---AATGAACTT 5'& ..|||| ||||||||| &5' -------TTTGGAAAATTACTTGAA 3' Bfar mmu-miR-26b beg:1306 end:1328 pic:3' TGGATAGGACT--TAATGAACTT 5'& .|. || |||||||||| &5' ----GTTTGGAAAATTACTTGAA 3' Bfar mmu-miR-27a beg:35 end:54 pic:3' CGCCTTGAATCGGTGACACTT 5'& .|| .|||||| &5' ----GACAACCAAGCTGTGA- 3' Bfar mmu-miR-295 beg:923 end:946 pic:3' TCTGAGTT-TTCATCATCGTGAAA 5'& ||.|| | ||| ||||.||| &5' AGGCTGATCAAGG---AGCATTTT 3' Bfar mmu-miR-295star beg:266 end:284 pic:3' CTTCACACGGGGTGTAAACTCA 5'& || |.| |||||.| &5' ----TG-GTCATA-ATTTGGG- 3' Bfar mmu-miR-29astar beg:337 end:359 pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& ||||.|||.| .|||| ||| &5' CTGAGCACTA--GGAAAACAG- 3' Bfar mmu-miR-300 beg:1285 end:1304 pic:3' CTTCTCTCGAACG-GGAACGTAT 5'& || ||| |.|||||| &5' -----GA-CTTAAACTTTGCAT- 3' Bfar mmu-miR-301b beg:1282 end:1306 pic:3' CGAAACTGTTA-TGGTAACGTGAC 5'& |||||| ||. |||||.|| &5' --TTTGACTTAAACT-TTGCATTG 3' Bfar mmu-miR-302c beg:329 end:349 pic:3' GGTGACTTTGTACCTTCGTGAA 5'& || .|||| | .|||||| &5' CC-TTGAATCT---GAGCACT- 3' Bfar mmu-miR-30estar beg:1289 end:1310 pic:3' CGACATTTGTAGGC-TGACTTTC 5'& ||||| |..| |.|||||| &5' ----TAAAC-TTTGCATTGAAAG 3' Bfar mmu-miR-322 beg:93 end:107 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||. ||||||| &5' ----------GAGGTGCTGCT- 3' Bfar mmu-miR-328 beg:410 end:425 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& ||| |||||.| &5' ---------CAGCCAGGGCTA- 3' Bfar mmu-miR-330star beg:871 end:894 pic:3' AGAGACGTCC-GGGACACGAAACG 5'& |||| | . .||||.|||| &5' ---CTGCTTGATGTTGTGTTTTG- 3' Bfar mmu-miR-33 beg:1088 end:1112 pic:3' ACGT-TACGTTG-ATGTTACGTG 5'& ||| |||.|. |. | || | &5' -GCAGATGTAGAATGTGA-GCTC 3' Bfar mmu-miR-337-3p beg:817 end:833 pic:3' TCCGTAGTATATCCTCGACTT 5'& |||| ||||.|||| &5' --GCAT------GGAGTTGAA 3' Bfar mmu-miR-339-5p beg:207 end:226 pic:3' GCACTC-GAGGACCTCCTGTCCCT 5'& || ||.|| ||||||| &5' ----AGTCTTCTT----ACAGGGA 3' Bfar mmu-miR-342-3p beg:92 end:115 pic:3' TGC-CCACGCTAAAGACACACTCT 5'& .|| ||||| ||||||||| &5' GCGAGGTGCTGCTTCTGTGTG--- 3' Bfar mmu-miR-3470a beg:380 end:404 pic:3' GGTCGGACCAGATGTTTCACT 5'& |||| |||||||||.||||| &5' CCAGAGTGGTCTACAGAGTGA 3' Bfar mmu-miR-3470b beg:1259 end:1282 pic:3' GGTCGGACC-AGATGTCTCACT 5'& | ..|| ||| |||||||| &5' -CTCTTTGTATCT-CAGAGTGA 3' Bfar mmu-miR-3471 beg:353 end:372 pic:3' TTACGGAATGTCAACCTAGAGT 5'& | .||| |||||.|. &5' -----CAGGCAGGTGGATTTT- 3' Bfar mmu-miR-34a beg:156 end:174 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .||||||. |||||.| &5' ---GCCAGCTG----ACTGCTA 3' Bfar mmu-miR-34a beg:859 end:879 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .|. | ||.|| ||||||. &5' --GATGA-CTGAG-CACTGCT- 3' Bfar mmu-miR-34b-5p beg:859 end:880 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& .|| | ||.| .||||||.| &5' --GATGA-CTGA--GCACTGCTT 3' Bfar mmu-miR-34c beg:857 end:880 pic:3' CGTTAGTCGATTGA--TGTGACGGA 5'& |.|| |.||| .||||||.| &5' ----TTAGATGACTGAGCACTGCTT 3' Bfar mmu-miR-362-5p beg:613 end:634 pic:3' TAAGTGTGGATCCAAG-GTTCCTAA 5'& |..|||| ||||||| &5' ------ATTTAGGAAAGCAAGGAT- 3' Bfar mmu-miR-375 beg:1145 end:1172 pic:3' AGTGCGCTC-GGCT---TGCTTGTTT 5'& |||.||| |||| |||.|||.| &5' --ACGTGAGACCGACAGACGGACAGA 3' Bfar mmu-miR-376c beg:96 end:114 pic:3' TGCACTTTAAAGGAGATACAA 5'& ||| |.|||.||| &5' --GTGCTG---CTTCTGTGT- 3' Bfar mmu-miR-380-3p beg:412 end:427 pic:3' TTCTACACCTGGTA-TGATGTAT 5'& .||| .||||||| &5' ---------GCCAGGGCTACATA 3' Bfar mmu-miR-380-5p beg:107 end:130 pic:3' GCGTACAAGATACC--AGTTGGTA 5'& |..|| || || ||||||| &5' -GTGTG-TCAA-GGCTTCAACCA- 3' Bfar mmu-miR-384-3p beg:605 end:625 pic:3' TAACACTT-GTTAAAGATCCTTA 5'& |||. ||| |.|||||| &5' ----TGAGTCAAA-TTTAGGAA- 3' Bfar mmu-miR-432 beg:729 end:748 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& |.|| || |||.||.| &5' ---CTCAGAGAAA-ACTTCAGG- 3' Bfar mmu-miR-433 beg:523 end:543 pic:3' TGTGGCTCC-TCGGGTAGTACTA 5'& ||| || ||||.|||.| &5' ------AGGAAGGCCATTATGGT 3' Bfar mmu-miR-434-3p beg:359 end:380 pic:3' TCCTCAGCTCACTAC-CAAGTTT 5'& .|| || || |||||| &5' ---GGTGGATTTTTGAGTTCAA- 3' Bfar mmu-miR-449c beg:868 end:880 pic:3' GGTCGATCGTTACGTGACGGA 5'& |||||||.| &5' ------------GCACTGCTT 3' Bfar mmu-miR-465b-3p beg:76 end:91 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||| |||||.| &5' TCTAC---------CCCTGGT- 3' Bfar mmu-miR-485 beg:1097 end:1121 pic:3' CTTAAGTAGTGCC-GGTCGGAGA 5'& |||| .| .||||||. &5' GAATGTGA-GCTCATCAGCCTT- 3' Bfar mmu-miR-496 beg:1075 end:1091 pic:3' CTCTAACCGGTA-CATTATGAGT 5'& ||| || .|||||| &5' ---------CATAGT-GTACTCA 3' Bfar mmu-miR-497 beg:91 end:107 pic:3' ATGTTTGGTGTCACACGACGAC 5'& .|. |||||||| &5' --------GCGAGGTGCTGCT- 3' Bfar mmu-miR-539 beg:683 end:702 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& |||. |||.|||||| &5' -----CCAGTCATAGTTTCTC- 3' Bfar mmu-miR-540-3p beg:124 end:149 pic:3' GGTCCT---AGCTGGAGACTGGA 5'& ||||| || ||||||||. &5' CCAGGTCCCTCTTCCTCTGACT- 3' Bfar mmu-miR-544 beg:1088 end:1104 pic:3' CTCGAACGATTTTTACGTCTTA 5'& || |.|||.||||| &5' ------GC---AGATGTAGAAT 3' Bfar mmu-miR-546 beg:1017 end:1035 pic:3' CTGAGGCACGGTGGTA 5'& || ||| |||||.||| &5' GAGTCC-TGCCATCAT 3' Bfar mmu-miR-669a beg:648 end:670 pic:3' TGTACTTGT--ACGTGTGTGTTGA 5'& .|||.|.| || |||.|||| &5' -TATGGATAGTTGGACATACAA-- 3' Bfar mmu-miR-671-5p beg:571 end:591 pic:3' GAGGTCGGGGA-GGTCCCGAAGGA 5'& ||| ||| ||||||.| &5' ------CCCAAACCA-GGCTTCTT 3' Bfar mmu-miR-672 beg:540 end:560 pic:3' AGTGTGTGTCA-TGTGGTTGGAGT 5'& |||| .| |.||||||| &5' -------CAGTAGCCCTAACCTCA 3' Bfar mmu-miR-673-3p beg:1101 end:1122 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| .| ||||||..|| &5' -GTGAGCTCA--TCAGCCTTGG- 3' Bfar mmu-miR-673-5p beg:33 end:54 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& | | |||| |||||||| &5' --CTGACAACCA-AGCTGTGA- 3' Bfar mmu-miR-676 beg:1104 end:1128 pic:3' TCGAGTTGTTGGAGTCCTGCC 5'& |||||| ||.||| | .|| &5' AGCTCATCAGCCTTGGCCTGG 3' Bfar mmu-miR-677 beg:687 end:708 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& ||| ||.| || |||||||| &5' TCAT-AGTT--TC-TCACTGAA 3' Bfar mmu-miR-680 beg:530 end:552 pic:3' GGG-GGTA-CAGTCGTCTACGGG 5'& || ..|| |||||.| |||| &5' -CCATTATGGTCAGTA---GCCC 3' Bfar mmu-miR-681 beg:160 end:181 pic:3' TCGACGGACGGTCGCTCCGAC 5'& ||||| ||||.| | |||. &5' AGCTGACTGCTACCCAGGT-- 3' Bfar mmu-miR-686 beg:609 end:630 pic:3' AGAAGTGGCAGACCC-TTCGTTA 5'& ||| |.| || |||||| &5' ---TCAAA-TTTAGGAAAGCAA- 3' Bfar mmu-miR-691 beg:204 end:226 pic:3' AAAAGACGG--AG-AGAA-GTCCTTA 5'& ||| || |||| ||||.| &5' ------GCCAGTCTTCTTACAGGGA- 3' Bfar mmu-miR-692 beg:1227 end:1246 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||| ||| |||.||||| &5' GAGAGAG----TCAGAGAGA- 3' Bfar mmu-miR-692 beg:1203 end:1222 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||| | | ..||||| &5' ----GAGACAATGGGAGAGA- 3' Bfar mmu-miR-692 beg:1213 end:1236 pic:3' CTCACTCCG-CGAGTTTCTCTA 5'& ||| ||| | ..||||| &5' GAGAGAGACAGAA-GGAGAGA- 3' Bfar mmu-miR-696 beg:837 end:852 pic:3' GGGTGTCGTTCGTGTGCG 5'& ||||| ||.|| |. &5' CCCAC--CAGGC-CG--- 3' Bfar mmu-miR-709 beg:131 end:151 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||.| |||||| |||. &5' -CCTCTT-CCTCTGACTCT 3' Bfar mmu-miR-715 beg:813 end:828 pic:3' GTGCGCCCCCACACGTGCCTC 5'& ||| |||.|||| &5' ---------GTGAGCATGGAG 3' Bfar mmu-miR-743b-5p beg:647 end:665 pic:3' ACTACCTGTGGTCAGACTTGT 5'& |||||.| .||.||| &5' --ATGGATAG----TTGGACA 3' Bfar mmu-miR-743b-5p beg:324 end:347 pic:3' ACTACCTGTGGTC---AGACTTGT 5'& .|| ||||| |||||.|| &5' --GTGCACACCTTGAATCTGAGCA 3' Bfar mmu-miR-758 beg:705 end:726 pic:3' ATC-ACCTGGTCCAGTGTTT 5'& ||| ||| .||||. ||.| &5' TAGTTGG--TAGGTTTCAGA 3' Bfar mmu-miR-764-5p beg:333 end:349 pic:3' TCCTCCTGTACACTCGTGG 5'& || |||||||. &5' -----GAATC-TGAGCACT 3' Bfar mmu-miR-764-5p beg:812 end:824 pic:3' TCCTCCTGTACACTCGTGG 5'& ||||||||. &5' ---------TGTGAGCAT- 3' Bfar mmu-miR-764-5p beg:859 end:876 pic:3' TCCTCCTGTACACTCGTGG 5'& || ||| |||||||. &5' --GATGAC---TGAGCACT 3' Bfar mmu-miR-764-5p beg:785 end:796 pic:3' TCCTCCTGTACACTCGTGG 5'& ||||||.. &5' -----------TGAGCATT 3' Bfar mmu-miR-764-5p beg:932 end:956 pic:3' TCCTCCTGT-ACACTCG-TGG 5'& ||||| |. ||| ||| .|| &5' AGGAGCATTTTGTAAGCTGCC 3' Bfar mmu-miR-7a beg:204 end:218 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& .| |||||||. &5' -----------GCCAGTCTTCT- 3' Bfar mmu-miR-7a beg:839 end:860 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& || ||.. |||||||. &5' -CACCAGGCCG---AGTCTTCT- 3' Bfar mmu-miR-7b beg:204 end:218 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& .| |||||||. &5' -----------GCCAGTCTTCT- 3' Bfar mmu-miR-7b beg:839 end:860 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& || ||. | |.|||||||. &5' -CACCAGG--C-CGAGTCTTCT- 3' Bfar mmu-miR-804 beg:172 end:195 pic:3' AGGTCCACTCCTTGTTGAGTGT 5'& |||||| || .|||||. &5' -CCAGGTCAGATTGGACTCAT- 3' Bfar mmu-miR-877 beg:124 end:146 pic:3' GGGACGCGGTAGAGGAGATG 5'& || |. || .||||||. &5' CCAGGTCCCTCTTCCTCTG- 3' Bfar mmu-miR-879 beg:251 end:270 pic:3' CCGAATC-TCGATATTCGGAGA 5'& ||| ||. |||.||. &5' ----TAGAAGTGA-AAGTCTT- 3' Bfar mmu-miR-879star beg:593 end:613 pic:3' GGCTTTCGAACTTCGGTATTCG 5'& || |.| || ||||.||. &5' CC--AGGTCTGTC-CCATGAGT 3' Bfar mmu-miR-880 beg:809 end:829 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& .|| | ||| ||||||| &5' ----TTCTGTGAGCATGGAGT- 3' Bfar mmu-miR-881 beg:1068 end:1084 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& | |||||.||| &5' --------GTGTAGACATAGT- 3' Bfar mmu-miR-883a-5p beg:1073 end:1094 pic:3' CATTGACGATGAAGAGAGTCGT 5'& .|| || | ||||||| &5' --GACA--TAGTGTACTCAGCA 3' Bfar mmu-miR-9 beg:639 end:663 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||||| | |.||||. ..| &5' TCATAGATATGGATAGTTGGA-- 3' Bfar mmu-miR-9 beg:44 end:64 pic:3' AGTATGTCGAT-CTATTGGTTTCT 5'& ||||. || .|||||| &5' ------AGCTGTGACATTCAAAGA 3' Bfar mmu-miR-9 beg:915 end:939 pic:3' AGTATGTCG-ATCT-ATTGGTTTCT 5'& ||||||. |||. |.|.|||.|| &5' --ATACAGTATAGGCTGATCAAGGA 3' Bfar mmu-miR-93 beg:925 end:947 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& ||| |. ||||.|||| &5' ----CTGATCAAGGAGCATTTTG 3' Bfar mmu-miR-93star beg:1078 end:1094 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& ||||. |||||||| &5' -----AGTGTA--CTCAGCAG- 3' Bfar mmu-miR-183star beg:1244 end:1259 pic:3' AATACCGGGAAGCCATTAAGTG 5'& |.|||||||||. &5' ----------TTGGTAATTCAT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Bfar mmu-let-7b 153 179 UUGGUGU-GUUG---GAUGAUGGAGU- ||||:: ||:| ||:||||| || CACCAUGCCAGCUGACUGCUACC-CAG Bfar mmu-let-7c 153 179 UUGGUAU-GUUG---GAUGAUGGAGU- |||||: ||:| ||:||||| || CACCAUGCCAGCUGACUGCUACC-CAG Bfar mmu-let-7d 91 111 UGAUACGUUGGAUGAUGGAGA- ||||:| |:||:|:||| --AAUGCGAGGUGCUGCUUCUG Bfar mmu-let-7e 93 127 -UGA--UAUGUUGGAGGA---------UGGAGU- :| :|:| :|:||: :|:||| UGCGAGGUGCUGCUUCUGUGUGUCAAGGCUUCAA Bfar mmu-let-7g 85 110 UGAC----AUGUUUGAUGAUGGAGU ||| |:|:|: |:||:|:|| CCUGGUAAUGCGAGGUGCUGCUUCU Bfar mmu-let-7i 160 179 UGUCGUGUUUGAUGAUGGAGU- |||| :|||:||||| || CCAGCU--GACUGCUACC-CAG Bfar mmu-miR-103 73 108 -AGUAUC----GGGAC----AUGU--UACGACGA- ||:| ||||| |:|: :||||||| CUCGUUUCUACCCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-107 80 108 ACUAUCGGGAC----AUGU--UACGACGA- || ||||| |:|: :||||||| --CUACCCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-10a 383 404 GUGUUUAAGCCUAGAUGUCCCAU- ||:| |:||||||| ||: -CCAGAGU--GGUCUACAGAGUGA Bfar mmu-miR-10b 393 423 UGUGUUUAAGCCAAGAUG-------UCCC- :|||:| ||||||| |||| CUACAGAGUGAGUUCUACAACAGCCAGGGC Bfar mmu-miR-125a 217 242 -GUGUCCAAU--UUC-CCAGAGUCCCU :||||| :|| || |||||| UUACAGGGACUUGAGAGG-CUCAGGC- Bfar mmu-miR-125b 216 242 -AGUGUUCAA----UC-CCAGAGUCCCU |:|||:| || || |||||| CUUACAGGGACUUGAGAGG-CUCAGGC- Bfar mmu-miR-134 173 215 -GGG-------------GAG-ACCAGU-------UGGUCAGUGU ||| ||| |||||| :|||||| ACCCAGGUCAGAUUGGACUCAUGGUCAAUACCCAGCCAGUCU-- Bfar mmu-miR-138 152 167 CUAAGUGUUGUGGUCGA- ||| |::|||||| ---GCACCAUGCCAGCUG Bfar mmu-miR-145 174 192 UUCCCUAAGGACCCUUUUGACCUG- || || |:|:||||| -------CCCAGGUCAGAUUGGACU Bfar mmu-miR-148a 311 332 -UGUUUCAAGACAUCACGUGACU || ::|| ||||||||| GACUGGGUGUGGUAGUGCACA-- Bfar mmu-miR-149 397 422 CCUCACUUC---UGUGCCUCGGUCU- ||||||: ||| ||||||: AGAGUGAGUUCUACAAC-AGCCAGGG Bfar mmu-miR-151 225 245 GGAGUUCCUCGGAGUCAGAUC ||::| ||| ||||| ||| ACUUGA-GAGGCUCAGGCUAC Bfar mmu-miR-15a 89 108 GUGUUUGGUAAUACACGACGAU :|| |: |||||||| -GUAAUGCGAG--GUGCUGCUU Bfar mmu-miR-15b 88 108 ACAUUUGGUACUACACGACGAU |||| |: |||||||| GGUAAUGCGAG--GUGCUGCUU Bfar mmu-miR-16 87 108 GCGGUUAUAAAUGCACGACGAU | :|||: | |||||||| UGGUAAUGCG-AGGUGCUGCUU Bfar mmu-miR-187 42 72 -GGC-CGACGUUGUG-----UUCUGUGCU- || ||||::|||: :||||| |: ACCAAGCUGUGACAUUCAAAGAGACAAGGG Bfar mmu-miR-193 221 241 GACCCUGAAACAUCCG-GUCAA ||||||| |||| ||| -AGGGACUUGAGAGGCUCAGG- Bfar mmu-miR-195 85 108 CGGUUAUAAAGA--CACGACGAU |: || | |||||||| CCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-196a 13 40 -GG-UUGUU---GUACUUUGAUGGAU- || |:|:| |:|||| ||||||: CCCGAGCGAGCCCGUGAAUCUACCUGA Bfar mmu-miR-199a 314 353 -CUUGU-CCAUC-------------AGACUUGUGACCC- | :: ||||| |||||:|||| || UGGGUGUGGUAGUGCACACCUUGAAUCUGAGCACUAGGA Bfar mmu-miR-199b 314 353 -CUUGU-CCAUC-------------AGAUUUGUGACCC- | :: ||||| |||:|:|||| || UGGGUGUGGUAGUGCACACCUUGAAUCUGAGCACUAGGA Bfar mmu-miR-200c 195 214 GGUAGUAAUGGGCC-GUCAUAAU :||| ||||| | |||| -GGUCAAUACCCAGCCAGUC--- Bfar mmu-miR-23a 83 99 CCUUUAGGGACCGUUACACUA ||||||:|||| || -----CCCCUGGUAAUGCGAG Bfar mmu-miR-23b 83 99 CCAUUAGGGACCGUUACACUA ||||||:|||| || -----CCCCUGGUAAUGCGAG Bfar mmu-miR-24* 290 332 -UGACUAUAG-UCGA---------------GUCAUC-CGUG :||| :||| ::|||| |||| UGCUGUCAAAAGGCUAAUAUAGACUGGGUGUGGUAGUGCACA Bfar mmu-miR-291a-3p 300 332 -CCG--------UGUGUUUCACCUU--CGUGAAA ||| || :: |||| |||| AGGCUAAUAUAGACUGGGUGUGGUAGUGCACA-- Bfar mmu-miR-296 218 244 -UGUCCU--AACUC-CCCC--CCGGGA |||||: ||||| || |||: UACAGGGACUUGAGAGGCUCAGGCUA- Bfar mmu-miR-29a 70 106 -UUGGCUAAAGU------CUA-------CCACGAU- :||: :|||| |:| ||||||: GGACUCGUUUCUACCCCUGGUAAUGCGAGGUGCUGC Bfar mmu-miR-29b 85 106 UUGUGACUAAA--GUUUACCACGAU- |||:| |:| ||||||: ---CCUGGUAAUGCGA--GGUGCUGC Bfar mmu-miR-29c 85 106 UGGCUAAA--GUUUACCACGAU- |:|:| |:| ||||||: CCUGGUAAUGCGA--GGUGCUGC Bfar mmu-miR-302 329 350 AGUGGUUUUGUACCUUCGUGAAU |||| :| :|||||| ACACCUUGAAUCU-GAGCACUA- Bfar mmu-miR-320 135 167 AAGCGGGAGA-----------GUUGGGUCGAAAA || :||||| || |||||| CUCUUCCUCUGACUCUGGCACCAUGCCAGCUG-- Bfar mmu-miR-324-3p 342 368 GGUCGUCGUGGACC------CCGUC-ACC- |||||: || ||||| ||| ----GAGCACUAGGAAAACAGGCAGGUGGA Bfar mmu-miR-328 220 241 UGCCUUCCCGU--CUCUCCCGGUC- |||| |||||| :||| ----CAGGGACUUGAGAGGCUCAGG Bfar mmu-miR-329 296 323 UUUUUCCA-----AUC-GACCCACACAA |||||| ||| ||||||||| CAAAAGGCUAAUAUAGACUGGGUGUGG- Bfar mmu-miR-337 150 169 UUUCCGUAGUAUAUCCUCGACUU |||| |||: |||||| --UGGCACCAUGCC--AGCUGAC Bfar mmu-miR-339 340 368 -ACUCGAGGACCUC----CUGUCC-CU- ||||| |: ||| |:|||| |: CUGAGCACUAGGAAAACAGGCAGGUGGA Bfar mmu-miR-341 162 183 -UGACUGGCUGGCUGG-CUAGCU :|||||:| |: || |:|| AGCUGACUG-CUACCCAGGUCA- Bfar mmu-miR-342 93 122 CUGC-CCACGCUAAAGACACAC---UCU- :|| ||||| ||||||||| ||: UGCGAGGUGCUGCUUCUGUGUGUCAAGGC Bfar mmu-miR-345 183 201 CGUGACCUGAUCCCCAGUCGU |:|||||| ||||| -GAUUGGACUCAUGGUCAA-- Bfar mmu-miR-346 229 291 -UCUCCG--UCCG-------UG---------------AG-------------CCCGUCUGU |||||| |||| || || ||| |||| GAGAGGCUCAGGCUACUAUGACCAAUAGAAGUGAAAGUCUUGGUCAUAAUUUGGGGUGACAU Bfar mmu-miR-34a 150 175 -UUGU----UGGUCGAUUCUGUGACGGU- ::|| :||||||: |||||:| UGGCACCAUGCCAGCUG----ACUGCUAC Bfar mmu-miR-351 219 242 -GUCCGAGU-UUC-CCGAGGAGUCCCU |||| | :|| ||| ||||| ACAGGGACUUGAGAGGC---UCAGGC- Bfar mmu-miR-370 124 155 -UUGGUCCAAGGU---GGGGUC-GU--CCG- |||||||| || ||:| | | ||| CAACCAGGUCCCUCUUCCUCUGACUCUGGCA Bfar mmu-miR-375 6 25 AGUGCGCUCGGCUUGCUUGUUU :| |: ||||:|||:| -AGCAAGGCCCGAGCGAGCC-- Bfar mmu-miR-376c 95 115 GCACUUUAAA--GGAGAUACAA ||::| |:|||:||| --CGAGGUGCUGCUUCUGUGUG Bfar mmu-miR-377 95 116 UGUUUUCA--ACGGAAACACACUA :|:|| |||:| |||||| --CGAGGUGCUGCUUCUGUGUGU- Bfar mmu-miR-378 217 242 UGUGU-CCUGGAC-CUC--AGUCCUC :||| ||||:|| ||| ||||| UUACAGGGACUUGAGAGGCUCAGGC- Bfar mmu-miR-380-5p 98 131 -CGCGUAC-AAGAUAC-CAGU--------UGGU- |:|| || ||||:|| |||| |||| GGUGC-UGCUUCUGUGUGUCAAGGCUUCAACCAG Bfar mmu-miR-383 118 152 -UCGGUG-----UCAGUGGA-----AGACU-AGA- :||: :||| ||| ||||| ||| AGGCUUCAACCAGGUC-CCUCUUCCUCUGACUCUG Bfar mmu-miR-384 340 355 ACACUUGUUAAAGAUCCUUA |||:|| ||||||| -CUGAGCA----CUAGGAAA Bfar mmu-miR-411 311 338 -UGACUCCCA--AUCACC--UGGCACAA ||||:| || ||||| ||| || GACUGGGUGUGGUAGUGCACACCUUGA- Bfar mmu-miR-412 300 325 UGCCGAUCAC--CUGGUCCACUUCA- ||||| |||::|||| :|| -AGGCUAAUAUAGACUGGGUGUGGUA Bfar mmu-miR-424 84 108 AGGUU--UUGUACUUAACGACGAC || ||: || ||||||| CCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-429 192 214 -UGCC-GUAAU-GGUCUGUCAUAAU |:|| || || |||| |||| CAUGGUCAAUACCCAGCCAGUC--- Bfar mmu-miR-431 3 26 GGACGUACUGCCGGA--CGUUCUGU ||| |||| ||:|| | --GGCAGCAAGGCCCGAGCGAGCCC Bfar mmu-miR-449 158 184 -UGGUCGAUUGUU-AUGUGA-CGGU- :||||||:|| ||| | |:|| UGCCAGCUGACUGCUACCCAGGUCAG Bfar mmu-miR-449b 82 109 -GGUCGAUCGUUACG-----UGACGGA- || ||:|:||||| :||||:| ACCC-CUGGUAAUGCGAGGUGCUGCUUC Bfar mmu-miR-450b 276 302 AUAAGUCCU--UGUAUGAC-GUUUU- |||::||: ||||:||| ||||| AAUUUGGGGUGACAUGCUGUCAAAAG Bfar mmu-miR-455-3p 156 173 UCACAUAUACGGGCACCUGACGUA ||||| |||||| ------CAUGCCAGCUGACUGCU- Bfar mmu-miR-469 37 69 CCUG-UGGUUCUAGUUACU------UUCUCCGU- ||| |||||| :||| ||||| || UGACAACCAAGCU--GUGACAUUCAAAGAGACAA Bfar mmu-miR-483 377 405 UGUUCUGCCCUCCCCUC----CUCACU- |||||| ||| || |||||| UCAAGACCAGAGUGGUCUACAGAGUGAG Bfar mmu-miR-485-3p 228 252 -CUCUCCUC--UCGGCACAUACUGA |||||| :||: |||||| UGAGAGGCUCAGGCUAC-UAUGACC Bfar mmu-miR-485-5p 182 211 CUUAAGU--AGUGCC-------GGUCGGAGA :||| : |||:|| |||||| AGAUUGGACUCAUGGUCAAUACCCAGCCA-- Bfar mmu-miR-489 100 119 -CGACGGUAUAUACACCACAGUAA |||||: ||| |||||| UGCUGCUUC---UGU-GUGUCAA- Bfar mmu-miR-490 395 422 -GUCGUACCUCAGGA-------GGUCCAAC ||| ||||:|| ||||| ACAGAGU-GAGUUCUACAACAGCCAGGG-- Bfar mmu-miR-496 181 208 CUCUAACC-G-GUACA--UUAUGAGU- ||||||| | |||| ||||| || CAGAUUGGACUCAUGGUCAAUACCCAG Bfar mmu-miR-497 89 108 AUGUUUGGUGUCACACGACGAC :|| |: || |||||||| -GUAAUGCG-AG-GUGCUGCUU Bfar mmu-miR-500 334 363 GACUUGGGAACG-GGUCCA------CGUA ||||:|: || |:||| ||| UUGAAUCUGAGCACUAGGAAAACAGGCAG Bfar mmu-miR-501 412 435 AAAGUGGGUCCC----UGUUUCCUAA || |||||| |:|:|||| --ACAGCCAGGGCUACAUAGAGGAA- Bfar mmu-miR-501* 262 292 GUUUAGGAACGGG-------CCCAC-GUAA ||:||:| |:| ||||| ||| AAAGUCUUGGUCAUAAUUUGGGGUGACAUG Bfar mmu-miR-532 97 123 UGCCAGGAUGUG-------AGUUCCGUAC ||| ||:| ||||||| -AGGUGCUGCUUCUGUGUGUCAAGGCU-- Bfar mmu-miR-540 126 150 -GGUCCU---AGCUGGAGACUGGA ||||| || ||||||||: ACCAGGUCCCUCUUCCUCUGACUC Bfar mmu-miR-541 108 138 -ACACUGG---UUGUAGUC---UUAGGGAA |||| : ::| ||| ::||||| CUGUGUGUCAAGGCUUCAACCAGGUCCCUC Bfar mmu-miR-546 144 160 -CUGAGGCACGGUGGUA- |||||:| | |||||| UGACUCUG-G-CACCAUG Bfar mmu-miR-615 220 244 UUCUCCCU-------CUGGGUCCGAGCCU ||||| |:|:|||||| --CAGGGACUUGAGAGGCUCAGGCUA--- Bfar mmu-miR-665 66 92 AUUCCCUGG----AGUCGGAGGACCA- |||||||: || || |||||| CAAGGGACUCGUUUCUACC-CCUGGUA Bfar mmu-miR-666 10 29 -CCGAGAGUGUCGACACGGGCGA ||| | |: ||| |||||: AGGC-C-CG-AGCGA-GCCCGUG Bfar mmu-miR-668 1 31 CCAUCACCCG-------------GCUCGGCUCACUGU ||||| |||||| |||| -----UGGGCAGCAAGGCCCGAGCGAGCCC-GUGAA- Bfar mmu-miR-675-5p 110 159 UGACAC---------------CC-GGGA-AAGG------- CGUGGU |||| || |||| |||| |||||| -GUGUGUCAAGGCUUCAACCAGGUCCCUCUUCCUCUGACUCUGGCACCAU Bfar mmu-miR-676 402 424 -UCGAGUUGUUGGA-GUCCUGCC ||:|| ||||| ||||:| GAGUUCUACAACAGCCAGGGCU- Bfar mmu-miR-678 202 228 -GGA--GGUCAGGAACGUGGCUCUG- || ||||||:| :|| |:||| ACCCAGCCAGUCUUCUUACAGGGACU Bfar mmu-miR-679 172 200 -UGGUUCUCAGUG------GAGUGUCAGG ||| || |||| ||||::||| UACCCAG-GUCAGAUUGGACUCAUGGUCA Bfar mmu-miR-680 82 105 -GGGGGUACAGU-CG-UCUACGGG ||||:: || || ||:|||: ACCCCUG-GUAAUGCGAGGUGCUG Bfar mmu-miR-681 100 124 UCGACG--GACGGUCGC-UCCGAC ||||| |||: |: ||||| UGCUGCUUCUGUGUGUCAAGGCUU Bfar mmu-miR-689 201 228 CCUGGGGCGGCUCGC--------CCCUGC |||| ||| ||: ||||| -UACCCAGCC-AGUCUUCUUACAGGGACU Bfar mmu-miR-693-5p 309 325 CUUUUGAAAGCCUACACCGAC |:||| ||:|||||: -UAGACU---GGGUGUGGUA- Bfar mmu-miR-695 235 256 AAGUCAGUGGAUACGGGUUAGA |||| ||||| ||||| CUCAGGCUACUAUGACCAAUA- Bfar mmu-miR-706 61 83 AAAAAACUCUG-UCCCAA---AGAGA- ||||| |||| |:||| -----AGAGACAAGGGACUCGUUUCUA Bfar mmu-miR-709 133 152 AGGAGGACGGAGACGGAGG- ||||:| |||||| |||: CCCUCUU-CCUCUGACUCUG Bfar mmu-miR-712* 276 294 GUUGUGGGCCCCCACUGAGCGU |: | ||||||| :|| ---AAUUUG-GGGUGACAUGCU Bfar mmu-miR-718 343 369 GCUGUGGG--------CCGGCCCGCCUUC :|||: ||| ||:||| -AGCACUAGGAAAACAGGCA-GGUGGAU- Bfar mmu-miR-720 1 24 ACC------UCCGGGGUCGCUCUA ||| |||||| |||||| UGGGCAGCAAGGCCCGAGCGAGC- Bfar mmu-miR-741 421 445 -GAUGUAUCUUACC-GUAGAGAGU |||||||||: ||| |||| GCUACAUAGAGGAACCAUGUCUCU Bfar mmu-miR-744 10 29 CGACAAUCGGGAUCG---GGGCGU :|||| ||| ||||: -----AGGCCCGAGCGAGCCCGUG Bfar mmu-miR-762 103 137 -CGAG-----ACAGGGCCGG----GGU-CGGGG- |||: |||| |||: ||| |:||| UGCUUCUGUGUGUCAAGGCUUCAACCAGGUCCCU Bfar mmu-miR-763 158 190 -CGGU-GACCAA-GAAGGGUC------GACC- |||| ||| || ||||| :||| UGCCAGCUGACUGCUACCCAGGUCAGAUUGGA Bfar mmu-miR-9 358 390 GUAUGUCGAUCUA------------UUGGUUUCU :||| |:||| :||||:|| --GGCAGGUGGAUUUUUGAGUUCAAGACCAGAGU Bfar mmu-miR-92 299 331 GUCCGG----------CCCUGU---UCACGUUAU ||||: ||| |||||| AAGGCUAAUAUAGACUGGGUGUGGUAGUGCAC-- Bfar mmu-miR-96 309 333 -UCGUUUUUACACGAUCACG-GUUU || :::|||| |||||| || UAGACUGGGUGUGGUAGUGCACAC- Bfar mmu-miR-98 89 110 UUGUUAUGUUGAAUGAUGGAGU :|||:|:| |:||:|:|| -GUAAUGCGAGGUGCUGCUUCU Bfar mmu-miR-15a 100 107 G--UGUUUG-GUAAUA------------------CACGACGAU | ::|| |:|| |||||||| ACAAGGGACUCGUUUCUACCCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-15b 100 107 A-----------------------CAUU-UGGUACUACACGACGAU |||| :| | |||||||| ACAAGGGACUCGUUUCUACCCCUGGUAAUGCGAG---GUGCUGCUU Bfar mmu-miR-16 100 107 ----------------------GCGGUUAUAAAUGCACGACGAU :| :|||: | |||||||| ACAAGGGACUCGUUUCUACCCCUGGUAAUGCG-AGGUGCUGCUU Bfar mmu-miR-195 100 107 C--------------------GGUUAUAAAGA--CACGACGAU | :|| | |||||||| ACAAGGGACUCGUUUCUACCCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-384 347 354 AC---------------------------ACUUGUUAAAGAUCCUUA |||:|| ||||||| ACUGGGUGUGGUAGUGCACACCUUGAAUCUGAGCA----CUAGGAAA Bfar mmu-miR-424 100 107 A--------------------GGUU-UUGUACUUAACGACGAC | : ||: ||: ||||||| ACAAGGGACUCGUUUCUACCCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-497 100 107 AUGUU------------UGG---------UGUCACACGACGAC ||| :|: |||||||| ACAAGGGACUCGUUUCUACCCCUGGUAAUGCGAGGUGCUGCUU Bfar mmu-miR-673 47 54 GAGGUUC-CU---------------------GGUCUCGACACUC ||:|| || ||| |||||||| GCCCGAGCGAGCCCGUGAAUCUACCUGACAACCA-AGCUGUGAC Bfar mmu-miR-692 59 66 CU------------------------CACUCCGCGAGUUUCUCUA |||| | :||||||||| CCGUGAAUCUACCUGACAACCAAGCUGUGA--CAUUCAAAGAGAC Bfar mmu-miR-763 160 167 C--------------GGUGACCAAGA-------AGGGUCGACC || ||| ||| | ||||||| AACCAGGUCCCUCUUCCUCUGACUCUGGCACCAUGCCAGCUGA Bfar mmu-let-7d 89 109 ugaUACGUUGGAUGAUGGAGA ||||:| |:||:|:||| gtaATGCGAGGTGCTGCTTCT Bfar mmu-let-7e 118 144 ugauAUGUUGG---AG---GAUGGAGu | ||||| || || |||| aggcTTCAACCAGGTCCCTCTTCCTCt Bfar mmu-miR-103 79 106 AGUAUCGGGAC----AUG--UUACGACGA || || ||||| |:| ::||||||| TC-TACCCCTGGTAATGCGAGGTGCTGCT Bfar mmu-miR-106a 330 351 aUGGACGUGACAAUCGUGAaac |||| | | | |||||| cACCTTGAATCTGAGCACTagg Bfar mmu-miR-107 78 106 acuAUCGGGAC----AUG--UUACGACGA || ||||| |:| ::||||||| ttcTACCCCTGGTAATGCGAGGTGCTGCT Bfar mmu-miR-10a 382 402 guGUUUAAGCCUAGAUGUCCCAu ||:| | |:||||||| || acCAGAGT--GGTCTACAGAGTg Bfar mmu-miR-10b 382 400 UGUGUUUAAGCCAAGAUGUCcc || ||:| | || ||||||| AC-CAGAGT-GG-TCTACAGag Bfar mmu-miR-125a 218 242 gUGUCC---AAUUUCCCAGAGUCCcu ||||| ||:|: || |||||| tACAGGGACTTGAGAGG-CTCAGGct Bfar mmu-miR-125b 217 242 AGUGUUC---AA-UCCCAGAGUCCcu |:|||:| || || | |||||| TTACAGGGACTTGAGAGGCTCAGGct Bfar mmu-miR-134 187 216 gggGAG-ACCAGUU-------GGUCAGugu ||| ||||||| |||||| ggaCTCATGGTCAATACCCAGCCAGTCttc Bfar mmu-miR-138 149 165 cuaaGUGUUGUGGUCGA ||| |::|||||| ctggCACCATGCCAGCT Bfar mmu-miR-145 167 190 uucccuaaGGACCCUUUUGACCUG || || |:|:||||| actgctacCCAGGTCAGATTGGAC Bfar mmu-miR-148a 312 333 UGUUUCAAGACAUCACGUGacu || ::|| : ||||||||| ACTGGGTGTGGTAGTGCACacc Bfar mmu-miR-15a 86 107 guguuugguaaUACACGACGAu | |||||||| ctggtaatgcgAGGTGCTGCTt Bfar mmu-miR-15b 88 107 aCAUUUGGUACUACACGACGAu |||| | || |||||||| gGTAATGC--GAGGTGCTGCTt Bfar mmu-miR-16 84 107 GCGGUUAUAA--AUGCACGACGAu | |:::|| | | |||||||| CCCTGGTAATGCGAGGTGCTGCTt Bfar mmu-miR-183 398 428 gUCACUUAAGAU------GGUCACG--GUAU |||||:||||| |||| || |||| gAGTGAGTTCTACAACAGCCAGGGCTACATA Bfar mmu-miR-187 43 70 GG-CCGACGUUGU--GU---UCUGUGCu || ||||::||| || ||||| | CCAAGCTGTGACATTCAAAGAGACAAGg Bfar mmu-miR-193 220 241 GACCCUGAAACAUCCG-GUCaa | ||||||| |||| ||| CAGGGACTTGAGAGGCTCAGgc Bfar mmu-miR-195 85 107 cGGUUAUAAAG--ACACGACGAu |:::|| | | |||||||| cCTGGTAATGCGAGGTGCTGCTt Bfar mmu-miR-196a 14 38 GG-UUGUU---GUACUUUGAUGGAu || |:|:| |:|||| |||||| CCGAGCGAGCCCGTGAATCTACCTg Bfar mmu-miR-199a 327 351 CUUGUCCAUC--AGACUUGUGACCC | ||| | | |||||:|||| || GCACACCTTGAATCTGAGCACTAGG Bfar mmu-miR-199a 296 317 cUUGUCC-AUCAGACUUGUGACCC || ||| || | | | |||||| cAAAAGGCTAATAT--AGACTGGG Bfar mmu-miR-199b 296 317 cUUGUCC-AUCAGAUUUGUGACCC || ||| || || | |||||| cAAAAGGCTA--ATATAGACTGGG Bfar mmu-miR-199b 327 351 CUUGUCCAUC--AGAUUUGUGACCC | ||| | | |||:|:|||| || GCACACCTTGAATCTGAGCACTAGG Bfar mmu-miR-200c 194 216 gguAGUAAUGGG-CCGUCAUAAu ||| ||||| | |||| || tggTCAATACCCAGCCAGTCTTc Bfar mmu-miR-23a 78 98 ccuuUAGGGACCGUUACACUa | ||||||:|||| || ttctACCCCTGGTAATGCGAg Bfar mmu-miR-23b 78 98 ccauUAGGGACCGUUACACUa | ||||||:|||| || ttctACCCCTGGTAATGCGAg Bfar mmu-miR-24* 302 330 uGACUAUAGUCGA-----GUCAUC-CGUG || |||| : || ::|||| |||| gCTAATATAGACTGGGTGTGGTAGTGCAC Bfar mmu-miR-25 308 332 agUCUGGCUC---UGUUCACGUuac ||||:|:| : |||||| atAGACTGGGTGTGGTAGTGCAcac Bfar mmu-miR-291a-3p 326 350 cCGUGUG----UUUCACCUUCGUGAaa |||||| || || |||||| tGCACACCTTGAATCTG--AGCACTag Bfar mmu-miR-296 219 238 UGUCCU--AACUCCCCCCCGGGa |||||: |||| | |||:| ACAGGGACTTGA---GAGGCTCa Bfar mmu-miR-29a 84 104 uuggcuaaagucuaCCACGAu |||||| ccctggtaatgcgaGGTGCTg Bfar mmu-miR-29b 82 104 UUGUGACUA--AAGUUUACCACGAu | | |||:| | |:| |||||| ACCCCTGGTAATGCGA--GGTGCTg Bfar mmu-miR-302 329 350 aGUGG-UUUUGUACCUUCGUGAau |||| :||: || |||||| aCACCTTGAATCTG--AGCACTag Bfar mmu-miR-320 138 168 AAGCGG---GAGA--GUUG---GGUCGAaaa ||| :| |||| || | |||||| TTCCTCTGACTCTGGCACCATGCCAGCTgac Bfar mmu-miR-324-3p 339 366 gGUCGUCGUGGACC------CCGU-CACC | | |||||: || |||| |||| tCTG-AGCACTAGGAAAACAGGCAGGTGG Bfar mmu-miR-328 216 239 ugccuUCCC--GUCUCUCCCGGUC |||| : |||||| :||| cttacAGGGACTTGAGAGGCTCAG Bfar mmu-miR-329 296 323 uUUUUCC----A-AUC-GACCCACACaa |||||| | ||| ||||||||| cAAAAGGCTAATATAGACTGGGTGTGgt Bfar mmu-miR-337 148 168 uuuCCGUAGUAUAUCCUCGACUu |||| |||: |||||| tctGGCACCATGCC--AGCTGAc Bfar mmu-miR-339 341 365 ACUCGAGGACCU----CCUGUCCcu ||||| |: ||| |:|||| TGAGCACTAGGAAAACAGGCAGGtg Bfar mmu-miR-341 163 188 uGACUGGC--UGG---CUGGCUAGCu |||||:| ||| | | |||:| gCTGACTGCTACCCAGGTCAGATTGg Bfar mmu-miR-345 163 185 CG--UGACCUGAU--CCCCAGUCgu || |||| ||| |||||| GCTGACTG--CTACCCAGGTCAGat Bfar mmu-miR-346 215 242 ucuccGUCCGUGAGC---CC--GUCUGu |||| |||:| || |||:| tcttaCAGGGACTTGAGAGGCTCAGGCt Bfar mmu-miR-34a 138 162 uuguuGGUCGAUUCUGUG--ACGGU |:: || |:||| ||||| ttcctCTGACTCTGGCACCATGCCA Bfar mmu-miR-351 220 242 GUCC--GAGUUUCCCGAGGAGUCCcu |||| ||::|: || |||||| CAGGGACTTGAGAGG---CTCAGGct Bfar mmu-miR-370 145 168 uUG-GUCCAAGGUGGGGUCGUCcg || | || |||: ||||| | gACTCTGGCACCATGCCAGCTGac Bfar mmu-miR-375 4 26 aGUGCGCUC--GGCUUGCUUGuuu || || || ||||:|||:| gCA-GCAAGGCCCGAGCGAGCccg Bfar mmu-miR-377 94 116 uGUUUU-CAACGGAAACACACua |:|:: | |||:| |||||| gCGAGGTGCTGCTTCTGTGTGtc Bfar mmu-miR-378 219 242 UGUGUCCUGGAC-CU-C-AGUCCuc ||| :||||:|| || | ||||| ACA-GGGACTTGAGAGGCTCAGGct Bfar mmu-miR-380-5p 99 121 CGCGUAC-AAGAUAC-CAGUUggu |:|| || ||||:|| ||||| GTGC-TGCTTCTGTGTGTCAAggc Bfar mmu-miR-382 27 46 gCUUAGGUGGUGCUUGUUGaag |||||:||| :| ||||| tGAATCTACC-TG-ACAACcaa Bfar mmu-miR-383 125 150 UCGGUGUCAGUG-GA---AGACU-AGA | ||| :||| | || ||||| ||| AACCA-GGTCCCTCTTCCTCTGACTCT Bfar mmu-miR-411 312 338 UGACUCCCA--AUCAC--CUGGCACaa ||||:| || ||||| ||| || ACTGGGTGTGGTAGTGCACACCTTGaa Bfar mmu-miR-412 299 323 UGCCGAU--CACCUGGUCCACUUCA | ||||| | |||::|||| :|| AAGGCTAATATAGACTGGGTGTGGT Bfar mmu-miR-424 86 107 agguuUUGUACUUAACGACGAc ||:: ||: ||||||| ctggtAATGCGAGGTGCTGCTt Bfar mmu-miR-429 193 216 UGCC-GUAAU-GGUCUGUCAUAAu |:|| || || |||| |||| || ATGGTCAATACCCAGCCAGTCTTc Bfar mmu-miR-431 1 14 ggacguacugCCGGACGUUCUGu || | |||||:| ---------tGGGCAGCAAGGCc Bfar mmu-miR-449 139 162 uGGUCGAUUGUUA-UGUG--ACGGU || ||:|| | :||| ||||| tCC-TCTGACTCTGGCACCATGCCA Bfar mmu-miR-449b 85 107 GGUCGAU--CGUUACGUGACGGA || | || ||:| |::||||:| CCTGGTAATGCGAGGTGCTGCTT Bfar mmu-miR-455-3p 150 173 ucacauaUACGGGCACCUGACGua ||||| | |||||| tggcaccATGCCAGCTGACTGCta Bfar mmu-miR-485-3p 229 251 CUCUCC-UCUCGGCACAUACUGa |||||| || | |||||| GAGAGGCTCAGGCTACTATGACc Bfar mmu-miR-485-5p 193 214 cuuaAGUAGUGCCGGUCGG--AGA ||| :|| |||||| ||| atggTCAATAC--CCAGCCAGTCT Bfar mmu-miR-489 101 119 CGACGGUAUAUACACCACAGUaa |||||: | ||| |||||| GCTGCT---TCTGT-GTGTCAag Bfar mmu-miR-490 396 423 GUCGUACCUCAGGA-------GGUCCaac ||| :| ||||:|| ||||| CAGAGT-GAGTTCTACAACAGCCAGGgct Bfar mmu-miR-497 78 107 AUGUUUGGUGUCA--------CACGACGAc | | | || ::|| |||||||| TTCTACCCCTGGTAATGCGAGGTGCTGCTt Bfar mmu-miR-500 340 368 GACUUGGGAAC-----G--GGUCCACGUA ||||:| || | | |||||| || CTGAGCACTAGGAAAACAGGCAGGTGGAT Bfar mmu-miR-501 410 435 aaaGUGGGUCCC----UGUUUCCUaa || |||||| |:|:|||| caaCAGCCAGGGCTACATAGAGGAac Bfar mmu-miR-501* 261 291 gUUUAGGAACGGG--------CCCAC-GUAa ||| :|||| :| ||||| ||| gAAAGTCTTGGTCATAATTTGGGGTGACATg Bfar mmu-miR-532 102 124 ugCCAGGAUGUG-AGUUCCGUAc | |:||:::: ||||||| | ctGCTTCTGTGTGTCAAGGCTTc Bfar mmu-miR-540 127 149 GGUCC---UAGCUGGAGACUGga ||||| || |||||||| CCAGGTCCCTCTTCCTCTGACtc Bfar mmu-miR-541 111 137 ACACUGGU-UGUAGU---CUUAGGGAa |||| | | :| ||| ::||||| TGTGTCAAGGCTTCAACCAGGTCCCTc Bfar mmu-miR-546 145 158 CUGAGGCACGGUGGUA ||||| || |||||| GACTC--TGGCACCAT Bfar mmu-miR-615 218 241 uUCUCCCU---CUGGGUCCGAG-CCu | ||||| || |||||| || tACAGGGACTTGA--GAGGCTCAGGc Bfar mmu-miR-666 11 28 CCGAGAGUGUCGACACGGGCga ||| | ||| | ||||| GGC---CCGAGC-GAGCCCGtg Bfar mmu-miR-673 34 54 gaGGUUCCUGGUCUCGACACUc |::| |||| |||||||| acCTGACAACCA-AGCTGTGAc Bfar mmu-miR-675-5p 146 176 UGACACC------CGG--GAAAGGCG-UGGu ||| ||| ||| || |:|| ||| ACTCTGGCACCATGCCAGCTGACTGCTACCc Bfar mmu-miR-676 403 424 UCGAGUUGUUG--GAGUCCUGcc ||:|| ||||| | ||||:| AGTTCTACAACAGC-CAGGGCta Bfar mmu-miR-678 204 226 GG-AGGUCAGGAACGUGGCUCUG || ||||||:| :|| |:||| CCAGCCAGTCTTCTTACAGGGAC Bfar mmu-miR-679 173 199 UGGUUCUCAGU------GGAGUGUCAGg ||| || |||| ||||::||| ACCCAG-GTCAGATTGGACTCATGGTCa Bfar mmu-miR-681 80 102 ucgacGGACGGU--CGCUCCgac |||| :| |||||| ctaccCCTGGTAATGCGAGGtgc Bfar mmu-miR-689 200 227 ccUGGGGCGGCUC--------GCCCCUGc |||| ||| || | ||||| atACCCAGCC-AGTCTTCTTACAGGGACt Bfar mmu-miR-692 45 66 cUC-ACUCCGCGAGUUUCUCUa || || | | :||||||||| aAGCTGTGACATTCAAAGAGAc Bfar mmu-miR-693-5p 308 325 cuUUUGAAAGCCUACACCgac |:||| ||:||||| atAGACT---GGGTGTGGtag Bfar mmu-miR-695 235 256 aAGUCAGUGGAUACGGGUUAga |||| | ||||| ||||| cTCAGGCTACTATGACCAATag Bfar mmu-miR-706 56 83 aaaaaaCUCUGU--CC----CAAAGAga |||||| || |||||| ttcaaaGAGACAAGGGACTCGTTTCTac Bfar mmu-miR-709 132 150 AGGAGGACGGAGACGGAGg ||| :|| |||||| ||| TCCCTCTTCCTCTGACTCt Bfar mmu-miR-712* 272 293 guUGUGGGCCCCCACUGAGCGu |:| :: |||||||| :|| tcATAATTTGGGGTGACATGCt Bfar mmu-miR-718 350 369 gCUGUGGGCCGGCCCGCCUuc || | | || | ||:||| gGAAAACAGG-CAGGTGGAtt Bfar mmu-miR-720 7 24 accUCCGGGGUCGCUCua |||||| |||||| gcaAGGCCCGAGCGAGcc Bfar mmu-miR-741 422 444 GAUGUAUCUUACC---GUAGAGAGu ||||||||| || ||| |||| CTACATAGA--GGAACCATGTCTCt Bfar mmu-miR-744 4 28 CGACAAU-CGGGAUCG---GGGCgu || | | |||| ||| |||| GCAGCAAGGCCCGAGCGAGCCCGtg Bfar mmu-miR-762 109 136 cgAGACAGGGCCG--G--GGUC--GGGg | |||| ||| | |||| ||| tgTGTGTCAAGGCTTCAACCAGGTCCCt Bfar mmu-miR-763 145 167 CGGUGACC-AAGAAGGGUCGACc | | |||| | | ||||||| GACTCTGGCACCATGCCAGCTGa Bfar mmu-miR-763 188 211 CGGUG-ACCAAG--AAGGGUCGacc | | | ||| || | |||||| GACTCATGG-TCAATACCCAGCcag Bfar mmu-miR-9 356 389 GUAUGUCGAUCUA------------UUGGUUUCu || :||| |:||| :||||:|| CAGGCAGGTGGATTTTTGAGTTCAAGACCAGAGt Bfar mmu-miR-92 309 332 gUCCGGCCC---UGUUCACGUuau || |:||| : |||||| tAGACTGGGTGTGGTAGTGCAcac Bfar mmu-miR-96 310 333 UCGUUUUUACACGAUCACG-GUuu || :::|||| |||||| || AGACTGGGTGTGGTAGTGCACAcc Bfar mmu-miR-98 88 109 uugUUAUGUUGAAUGAUGGAGU |||:|:| |:||:|:|| ggtAATGCGAGGTGCTGCTTCT

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bfar RAID00117165 mmu-miR-876-5p miRNA MIMAT0004854 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID00268714 mmu-miR-190b-5p miRNA MIMAT0004852 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID00350063 mmu-miR-3470b miRNA MIMAT0015641 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID00365379 mmu-miR-26a-5p miRNA MIMAT0000533 Bfar mRNA 67118 CLIP-seq//Prediction 0.6478 Bfar RAID00860873 mmu-miR-23b-3p miRNA MIMAT0000125 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID00878582 mmu-miR-880-3p miRNA MIMAT0004844 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01073468 mmu-miR-322-5p miRNA MIMAT0000548 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID01133922 mmu-miR-495-3p miRNA MIMAT0003456 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01249171 mmu-miR-15a-5p miRNA MIMAT0000526 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID01361082 mmu-let-7a-2-3p miRNA MIMAT0017015 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01445206 mmu-miR-26b-5p miRNA MIMAT0000534 Bfar mRNA 67118 CLIP-seq//Prediction 0.6559 Bfar RAID01666889 mmu-miR-129-5p miRNA MIMAT0000209 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01679589 mmu-miR-497a-5p miRNA MIMAT0003453 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID01710830 mmu-miR-195b miRNA MIMAT0025076 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01725883 mmu-miR-410-5p miRNA MIMAT0017172 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01759374 mmu-miR-340-5p miRNA MIMAT0004651 Bfar mRNA 67118 CLIP-seq//Prediction 0.6308 Bfar RAID01781061 mmu-miR-6342 miRNA MIMAT0025085 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01819787 mmu-miR-6419 miRNA MIMAT0025175 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID01839201 mmu-miR-212-3p miRNA MIMAT0000659 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID01873943 mmu-miR-136-5p miRNA MIMAT0000148 Bfar mRNA 67118 CLIP-seq//Prediction 0.6308 Bfar RAID02052778 mmu-miR-7668-5p miRNA MIMAT0029842 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02071257 mmu-miR-6946-3p miRNA MIMAT0027793 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02208595 mmu-miR-494-5p miRNA MIMAT0017215 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02364141 mmu-miR-370-3p miRNA MIMAT0001095 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02447861 mmu-miR-3065-3p miRNA MIMAT0014837 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02668287 mmu-miR-9-5p miRNA MIMAT0000142 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02763454 mmu-miR-23a-3p miRNA MIMAT0000532 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02791401 mmu-miR-761 miRNA MIMAT0003893 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02808023 mmu-miR-664-5p miRNA MIMAT0017353 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID02889029 mmu-miR-590-3p miRNA MIMAT0004896 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03081407 mmu-miR-93-3p miRNA MIMAT0004636 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03108514 mmu-miR-5113 miRNA MIMAT0020621 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03132736 mmu-miR-6353 miRNA MIMAT0025096 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03151047 mmu-miR-1907 miRNA MIMAT0007876 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03318636 mmu-miR-7221-5p miRNA MIMAT0028410 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03408919 mmu-miR-3083-5p miRNA MIMAT0014874 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03463073 mmu-miR-6950-3p miRNA MIMAT0027801 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03472999 mmu-miR-384-3p miRNA MIMAT0001076 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID03474411 mmu-miR-6951-5p miRNA MIMAT0027802 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03513643 mmu-miR-223-3p miRNA MIMAT0000665 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID03522912 mmu-miR-195a-5p miRNA MIMAT0000225 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID03591248 mmu-miR-7b-5p miRNA MIMAT0000678 Bfar mRNA 67118 NGS (Next Generation Sequencing) 0.5483 Bfar RAID03702404 mmu-miR-16-5p miRNA MIMAT0000527 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID03711332 mmu-miR-219a-5p miRNA MIMAT0000664 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03733274 mmu-miR-489-3p miRNA MIMAT0003112 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03739506 mmu-miR-1264-3p miRNA MIMAT0014803 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03821674 mmu-miR-301a-3p miRNA MIMAT0000379 Bfar mRNA 67118 CLIP-seq 0.5483 Bfar RAID03943122 mmu-miR-23b-5p miRNA MIMAT0016980 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03984936 mmu-miR-382-5p miRNA MIMAT0000747 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID03998729 mmu-miR-15b-5p miRNA MIMAT0000124 Bfar mRNA 67118 Prediction 0.2202 Bfar RAID04018928 mmu-miR-224-5p miRNA MIMAT0000671 Bfar mRNA 67118 CLIP-seq//Prediction 0.6308 Bfar RAID04043594 mmu-miR-500-5p miRNA MIMAT0017258 Bfar mRNA 67118 Prediction 0.1828 Bfar RAID04564917 Fendrr lncRNA 68790 Bfar protein 67118 Microarray//RNA-seq 0.6606