DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004535 mmu-miR-150* 110749 Chaf1b gauagggGGUCCGGACAUGGUc | || |:||||||| gguggugCAAGCCUUGUACCAa 2 16 595 616 [mm9:16:93893158-93893179:+] 0.5009 155 7 -16.49 -0.1433 MIMAT0004535 mmu-miR-150* 110749 Chaf1b gauaGGGGGUCCGGAC-AUGGUc :::| || :||| ||||| gugaUUUCAAGCUCUGUUACCAc 2 19 389 411 [mm9:16:93892952-93892974:+] 0.5862 122 0 -15.93 -0.1567 MIMAT0004572 mmu-miR-290-3p 110749 Chaf1b cccgaauUUUGAUCCGCCG-UGAAa :||||: |:||| |||| cagaacuGAACUGUGUGGCAACUUa 2 18 1078 1102 [mm9:16:93893641-93893665:+] 0.5013 129 0 -17.80 -0.3877 MIMAT0000367 mmu-miR-291a-5p 110749 Chaf1b ucucUCCCGGAGG-----UGAAACUAc || ||| || ||||||| uggaAGCGCCACCUGGUGCCUUUGAUa 2 19 827 853 [mm9:16:93893390-93893416:+] 0.5013 141 7 -15.89 -0.1175 MIMAT0000367 mmu-miR-291a-5p 110749 Chaf1b ucUCUCCCGGAGGUGAA-ACUAc :| | |||| |||| |||| aaGGUGAUCCUCAACUUGUGAUc 2 21 690 712 [mm9:16:93893253-93893275:+] 0.5009 128 0 -14.36 -0.1425 MIMAT0000370 mmu-miR-292-3p 110749 Chaf1b ugUGAGUUUUG----GAC-CGCCG-UGAAa |: ||:||| ||| |:||| |||| aaAUGCAGAACUGAACUGUGUGGCAACUUa 2 23 1073 1102 [mm9:16:93893636-93893665:+] 0.5013 124 0 -20.38 -0.3938 MIMAT0004621 mmu-let-7b* 110749 Chaf1b cccuuCCGUCAUCCAAC-AUAUc ||:|| | ||| |||| cacguGGUAGCAUUUUGCUAUAc 2 18 1298 1320 [mm9:16:93893861-93893883:+] 0.5008 121 0 -7.25 -0.1221 MIMAT0004627 mmu-miR-20a* 110749 Chaf1b gaaauucacgagcaUUACGUCa ||||||| cccgccaacaggcaAAUGCAGa 2 9 1060 1081 [mm9:16:93893623-93893644:+] 0.5013 140 7 -10.87 -0.2816 MIMAT0004631 mmu-miR-29a* 110749 Chaf1b gacuUGUGGUUUUCUUUAGUCa | ||||| | ||||||| aaccAAACCAAUA-AAAUCAGu 2 19 1432 1452 [mm9:16:93893995-93894015:+] 0.5008 160 7 -14.75 -0.7061 MIMAT0004631 mmu-miR-29a* 110749 Chaf1b gacuugugguUUUCUUUAGUCa ||:|||||||| auuccuuagcAAGGAAAUCAGg 2 13 1251 1272 [mm9:16:93893814-93893835:+] 0.5010 156 7 -14.39 -0.1293 MIMAT0004631 mmu-miR-29a* 110749 Chaf1b gacuuGUGGUUUUC--UUUA-GUCa |:|||| || |||| ||| auaccCGCCAACAGGCAAAUGCAGa 2 18 1057 1081 [mm9:16:93893620-93893644:+] 0.5013 124 0 -13.65 -0.1998 MIMAT0004636 mmu-miR-93* 110749 Chaf1b gcccuuCACGAUCGAGUCGUCa | || | :||||||| cccuccGAGCCA-UUCAGCAGc 2 17 191 211 [mm9:16:93892754-93892774:+] 0.5002 146 7 -13.70 -0.1236 MIMAT0004647 mmu-miR-338-5p 110749 Chaf1b gugaguCGUGGUCCUAUA-ACAa |::| || |||| ||| guguguGUGCAAGAAUAUGUGUg 2 17 26 48 [mm9:16:93892589-93892611:+] 0.4991 120 0 -3.91 -0.1641 MIMAT0000650 mmu-miR-17* 110749 Chaf1b gaUGU-UCACGGGA--GUGACGUCa :|| :| ||| | |||||||| aaGCAGGGGGCCGUAGCACUGCAGa 2 21 1548 1572 [mm9:16:93894111-93894135:+] 0.5009 154 7 -25.14 -0.1040 MIMAT0004704 mmu-miR-335-3p 110749 Chaf1b ccaguccucgUUAUUACUUUUu || :||||||| acaaaacacaAAAGAUGAAAAc 2 13 894 915 [mm9:16:93893457-93893478:+] 0.5013 148 7 -5.67 -0.2765 MIMAT0001094 mmu-miR-412 110749 Chaf1b gcCGAUCACC--UGGUCCACUu |:||| || :||||||| ggGUUAGAGGCUUUCAGGUGAu 2 19 372 393 [mm9:16:93892935-93892956:+] 0.5139 153 7 -25.17 -0.3423 MIMAT0004781 mmu-miR-532-3p 110749 Chaf1b acguucggaaccCACACCCUCc ||||||||| gaaaauaccacuGUGUGGGAGu 2 11 1649 1670 [mm9:16:93894212-93894233:+] 0.5009 150 7 -19.22 -0.1823 MIMAT0003170 mmu-miR-541 110749 Chaf1b ucacacuGGUUGUAGUCUUAGGGAa |||| | | ||||||| ucuccacCCAAAACCCAAAUCCCUc 2 19 1458 1482 [mm9:16:93894021-93894045:+] 0.5008 158 7 -14.80 -0.2736 MIMAT0003173 mmu-miR-547 110749 Chaf1b gagugaGUUU-CUACAUGGUUc |||: |||||||| guggugCAAGCCUUGUACCAAc 2 16 596 617 [mm9:16:93893159-93893180:+] 0.5009 146 7 -13.44 -0.1039 MIMAT0004788 mmu-miR-20b* 110749 Chaf1b gaUCUUCACG-AGUGUGACGUCa ||::| | | :|||||||| gcAGGGGGCCGUAGCACUGCAGa 2 21 1550 1572 [mm9:16:93894113-93894135:+] 0.5009 155 7 -22.34 -0.1050 MIMAT0003189 mmu-miR-291b-5p 110749 Chaf1b ccucUCCCGGAGG-----UGAAACUAg || ||| || ||||||| uggaAGCGCCACCUGGUGCCUUUGAUa 2 19 827 853 [mm9:16:93893390-93893416:+] 0.5013 141 7 -19.29 -0.1175 MIMAT0003189 mmu-miR-291b-5p 110749 Chaf1b ccUCUCCCGGAGGUGAA-ACUAg :| | |||| |||| |||| aaGGUGAUCCUCAACUUGUGAUc 2 21 690 712 [mm9:16:93893253-93893275:+] 0.5009 128 0 -18.97 -0.1425 MIMAT0003732 mmu-miR-668 110749 Chaf1b ccaucacccggcucGGCUCACUGu | ||||||| gcuaguaaauauuaCAGAGUGACc 2 11 1523 1546 [mm9:16:93894086-93894109:+] 0.5009 142 7 -12.59 -0.3167 MIMAT0004822 mmu-miR-770-5p 110749 Chaf1b gcaccgGGUC--UGUGCACCA-CGa :||| ||||||||| || aaucugUCAGCUACACGUGGUAGCa 2 17 1285 1309 [mm9:16:93893848-93893872:+] 0.5008 127 0 -22.12 -0.1594 MIMAT0015219 mmu-miR-3475 110749 Chaf1b aaGUUUGGUACACGGAG-GUCu | |::| | |||||| ||| auCCAGUCCUAUGCCUCACAGc 2 20 1220 1241 [mm9:16:93893783-93893804:+] 0.5013 127 0 -19.05 -0.1229 MIMAT0003739 mmu-miR-673-5p 110749 Chaf1b gaGGUUCCUGG-UCUCGA-CACUc |||| | :| | :||| |||| ggCCAAAGCUCGAAGGCUGGUGAu 2 21 33 56 [mm9:16:93906295-93906318:+] 0.5362 123 0 -14.75 -0.1194 MIMAT0003740 mmu-miR-674 110749 Chaf1b augUGGUGAGGGUAGAGUCACg |:|| : |||||||| gaaAUCAGGAAUUUCUCAGUGa 2 20 1264 1285 [mm9:16:93893827-93893848:+] 0.5010 147 7 -16.35 -0.8501 MIMAT0003470 mmu-miR-691 110749 Chaf1b aaaagacggagagaAGUCCUUa ||||||| ccuuagcaaggaaaUCAGGAAu 2 9 1254 1275 [mm9:16:93893817-93893838:+] 0.5010 140 7 -12.05 -0.3647 MIMAT0003476 mmu-miR-669b 110749 Chaf1b uguACGUGUACGUGUGUUUUGa || :|| | | ||||||| acuUG-GCAAGAAAACAAAACa 2 20 881 901 [mm9:16:93893444-93893464:+] 0.5013 153 7 -9.73 -0.8633 MIMAT0003742 mmu-miR-455 110749 Chaf1b cacauauacgggcACCUGACg ||||||| agacugacuuuuaUGGACUGu 2 9 1572 1592 [mm9:16:93894135-93894155:+] 0.5009 140 7 -13.02 -0.5993 MIMAT0003495 mmu-miR-705 110749 Chaf1b acgGGUGGGGUGGAG-GGUGg :|| :| |:||| |||| aaaUCAGUCAAUCUCUCCACc 2 18 1445 1465 [mm9:16:93894008-93894028:+] 0.5008 121 0 -22.70 -0.4503 MIMAT0003510 mmu-miR-717 110749 Chaf1b ucucuuccauagAGACAGACUc | ||||||| gccuucuuccggUGUGUCUGAa 2 11 1908 1929 [mm9:16:93894471-93894492:+] 0.5010 142 7 -11.72 -0.1855 MIMAT0004236 mmu-miR-741 110749 Chaf1b agaugUAUCUUA--CCG-UAGAGAGu ||| ||| | | ||||||| aaccaAUAAAAUCAGUCAAUCUCUCc 2 19 1437 1462 [mm9:16:93894000-93894025:+] 0.5008 152 7 -8.95 -0.4042 MIMAT0004846 mmu-miR-881 110749 Chaf1b agaUAAGUCUUU-U-C-UGUGU-CAa || |||:|| | | ||||| || cgcAUACAGGAACAUGCACACACGUg 2 20 68 93 [mm9:16:93892631-93892656:+] 0.5002 120 0 -11.94 -0.2176 MIMAT0004848 mmu-miR-883a-5p 110749 Chaf1b cauuGACGAUGAA--GAGAGUCGu ||| ::|| :||||||| ggucCUG-AGUUUAAUUCUCAGCa 2 19 1845 1867 [mm9:16:93894408-93894430:+] 0.5010 143 7 -17.43 -0.6565 MIMAT0004850 mmu-miR-883b-5p 110749 Chaf1b acugacgauggguAAGAGUCAu |||||||| ggaaaucaggaauUUCUCAGUg 2 10 1263 1284 [mm9:16:93893826-93893847:+] 0.5010 145 7 -13.65 -0.4986 MIMAT0004881 mmu-miR-466f-5p 110749 Chaf1b guaCGUGUACGUGUGUGUGCAu | ||||| ||||||||| cagGAACAUG--CACACACGUg 2 20 74 93 [mm9:16:93892637-93892656:+] 0.5002 164 7 -27.41 -0.1519 MIMAT0004884 mmu-miR-466h 110749 Chaf1b auGUGUGUUCGUGUACGUGUGu ||:|||:| |||||||||| cgCAUACAGGAACAUGCACACa 2 21 68 89 [mm9:16:93892631-93892652:+] 0.5002 184 7 -31.73 -0.2928 MIMAT0004891 mmu-miR-509-3p 110749 Chaf1b gguaaUGUCUUUA--CAGUUAGu |:| |||| ||||||| aaccaAUA-AAAUCAGUCAAUCu 2 17 1437 1458 [mm9:16:93894000-93894021:+] 0.5008 149 7 -11.84 -0.5673 MIMAT0004862 mmu-miR-877* 110749 Chaf1b acccuccucccUCUUCUCCUGu :| ||||||| aucagcuucuuGGCAGAGGACu 2 12 1493 1514 [mm9:16:93894056-93894077:+] 0.5008 143 7 -12.49 -0.1000 MIMAT0005834 mmu-miR-466i 110749 Chaf1b auCACACAUACACACACACAUa |||||| | ||||||| agGUGUGUCCAAG-GUGUGUAa 2 21 956 976 [mm9:16:93893519-93893539:+] 0.5013 154 7 -18.85 -0.1747 MIMAT0005848 mmu-miR-466j 110749 Chaf1b aaUGUGUGUACGUGUACGUGUGu :||:||| | |||||||||| acGCAUACAGGAACAUGCACACa 2 22 67 89 [mm9:16:93892630-93892652:+] 0.5002 181 7 -28.76 -0.2928 MIMAT0005852 mmu-miR-1194 110749 Chaf1b ucCUAGAUCGUCAAUGAGUAag |: | | :| |||||| guGGCCAAAUAAACACUCAUga 3 21 58 79 [mm9:16:93906320-93906341:+] 0.5362 124 0 -5.84 -0.2161 MIMAT0005860 mmu-miR-1199 110749 Chaf1b ggCGCGCUGGC-CCUGAGUCu |: | ||| ||||||| ucGUUCUUCCGAAGACUCAGc 2 19 453 473 [mm9:16:93893016-93893036:+] 0.6586 145 7 -20.88 -0.4259 MIMAT0007866 mmu-miR-1905 110749 Chaf1b gaUGGCGCACC-AC-CCUGACCAc :|: | ||| | |||||||| caGCUUCUUGGCAGAGGACUGGUu 2 21 1495 1518 [mm9:16:93894058-93894081:+] 0.5008 150 7 -18.52 -0.1067 MIMAT0009397 mmu-miR-1933-3p 110749 Chaf1b uaucAGUGUGACUACCAGGACc || : | || ||||||| cugcUCUUCCAGA-GGUCCUGa 2 19 1832 1852 [mm9:16:93894395-93894415:+] 0.5009 148 7 -14.43 -0.1807 MIMAT0009417 mmu-miR-1950 110749 Chaf1b acugguauAGGAAUC-UACGUCu | :|||| |||||| acguggcuUGUUUAGAAUGCAGc 2 15 1186 1208 [mm9:16:93893749-93893771:+] 0.5013 122 6 -16.21 -0.1511 MIMAT0009425 mmu-miR-1954 110749 Chaf1b uuGUCCCAGAGUGAGA-CGUCa :|||||| | |||| |||| agUAGGGUC-CUCUCUAGCAGu 2 20 1739 1759 [mm9:16:93894302-93894322:+] 0.5009 133 0 -27.53 -0.1126 MIMAT0009427 mmu-miR-669n 110749 Chaf1b ugUGUGUAGGUGUGUGUUUa | | | | | ||||||| caAGAAAACAAAACACAAAa 2 19 887 906 [mm9:16:93893450-93893469:+] 0.5013 150 7 -7.63 -0.9262 MIMAT0009427 mmu-miR-669n 110749 Chaf1b ugUGU-GUAGGUGUGU-GUUUa ||| ::| | |||| |||| cgACAGUGUGCUCACAUCAAAa 2 19 1935 1956 [mm9:16:93894498-93894519:+] 0.5010 121 0 -11.34 -0.9582 MIMAT0009430 mmu-miR-1957 110749 Chaf1b caguauacgagAUGGUGAc ||||||| ugcauugaaaaUACCACUg 2 9 1643 1661 [mm9:16:93894206-93894224:+] 0.5009 140 7 -17.67 -0.3642 MIMAT0009433 mmu-miR-1960 110749 Chaf1b ucgggagaaGAUUGUCGUGACc :||| ||||||| gcuuaguggUUAAGAGCACUGa 2 14 1810 1831 [mm9:16:93894373-93894394:+] 0.5009 153 7 -16.93 -0.1616 MIMAT0009437 mmu-miR-1964 110749 Chaf1b uuucggccUCGGGUCUUCAGCc ||| : ||||||| acgacgacAGCAU-GAAGUCGu 2 15 436 456 [mm9:16:93892999-93893019:+] 0.6586 144 7 -16.68 -0.4957 MIMAT0009440 mmu-miR-1967 110749 Chaf1b cgUAGAAGAGGGGUCCUAGGAGu ||| || |::: ||||||| ugAUCCUCAACUUGUGAUCCUCu 2 22 694 716 [mm9:16:93893257-93893279:+] 0.5009 161 7 -18.74 -0.3144 MIMAT0009444 mmu-miR-1970 110749 Chaf1b guuUCGGAUAGGGGUCA-CUGUGu || ||| :|||| ||||| agcAGACUA-AGUCAGUAGACACa 2 21 801 823 [mm9:16:93893364-93893386:+] 0.5013 122 0 -19.60 -0.1452 MIMAT0009455 mmu-miR-1983 110749 Chaf1b ucuuuUGUACG-AGGUCCACUc | | || |:||||||| ggguuAGAGGCUUUCAGGUGAu 2 17 372 393 [mm9:16:93892935-93892956:+] 0.5139 151 7 -17.05 -0.3395 MIMAT0011287 mmu-miR-2183 110749 Chaf1b uccuccaguccCCAAGUu |||||| acucaugaauuGGUUCAc 2 8 72 89 [mm9:16:93906334-93906351:+] 0.5362 120 6 -6.25 -0.1192 MIMAT0015641 mmu-miR-3470b 110749 Chaf1b ggucggaccaGAUGUCUCACu :||||||||| cuaguaaauaUUACAGAGUGa 2 12 1524 1544 [mm9:16:93894087-93894107:+] 0.5009 151 7 -21.93 -0.6875 MIMAT0015645 mmu-miR-3473 110749 Chaf1b ccgACUCGG-UAGAGAGGu | ||:| |||||||| aaaUCAGUCAAUCUCUCCa 2 16 1445 1463 [mm9:16:93894008-93894026:+] 0.5008 154 7 -19.68 -0.8530 MIMAT0000128 mmu-miR-30a 110749 Chaf1b gaaggUC-AGCUCCUACAAA-UGu || |: |||||||| || caagaAGUUUCCGGAUGUUUCACg 2 18 415 438 [mm9:16:93892978-93893001:+] 0.6586 120 0 -15.71 -0.3900 MIMAT0000130 mmu-miR-30b 110749 Chaf1b ucgacUCACA-UCCUACAAA-UGu ||| | |||||||| || caagaAGUUUCCGGAUGUUUCACg 2 18 415 438 [mm9:16:93892978-93893001:+] 0.6586 124 0 -14.14 -0.3931 MIMAT0000134 mmu-miR-124 110749 Chaf1b ccguaaGUGGCGCACGGAAu :| | ||||||| gcuuggUAACAAGUGCCUUu 2 15 169 188 [mm9:16:93892732-93892751:+] 0.5002 142 7 -14.91 -0.1697 MIMAT0000140 mmu-miR-128 110749 Chaf1b uuucucuggccaaGUGACACu ||||||| gcauugaaaauacCACUGUGu 2 9 1644 1664 [mm9:16:93894207-93894227:+] 0.5009 140 7 -11.37 -0.1524 MIMAT0000144 mmu-miR-132 110749 Chaf1b gcugguaccGACAUCUGACAAu :| |:||||||| gacugacuuUUAUGGACUGUUg 2 14 1573 1594 [mm9:16:93894136-93894157:+] 0.5009 149 7 -17.17 -0.2781 MIMAT0000158 mmu-miR-146a 110749 Chaf1b uuggGUACCUU--AAGUCAAGAGu :| |||| | |||||||| caaaUAGGGAACGUGCAGUUCUCu 2 19 1605 1628 [mm9:16:93894168-93894191:+] 0.5009 157 7 -17.46 -0.1574 MIMAT0000162 mmu-miR-152 110749 Chaf1b gguucaaGACAGUACGU-GACu ||| :||||| ||| -----gcCUGCUAUGCACCUGc 2 15 1 17 [mm9:16:93906263-93906279:+] 0.5362 122 0 -14.30 -0.1380 MIMAT0000162 mmu-miR-152 110749 Chaf1b gguUCAAGACAGU-ACGUGACu ||||| |:| ||||||| gucAGUUCCCUUAGUGCACUGu 2 19 120 141 [mm9:16:93892683-93892704:+] 0.5002 161 7 -19.15 -0.1345 MIMAT0000163 mmu-miR-153 110749 Chaf1b cuagugaaaacacUGAUACGUu :||||||| ---------gccuGCUAUGCAc 2 10 1 13 [mm9:16:93906263-93906275:+] 0.5362 141 7 -10.74 -0.1016 MIMAT0000214 mmu-miR-185 110749 Chaf1b aguccUUGACGGAAAGAGAGGu | | |:| ||||||| auaaaAUCAGUCAAUCUCUCCa 2 18 1442 1463 [mm9:16:93894005-93894026:+] 0.5008 149 7 -16.87 -0.8530 MIMAT0000224 mmu-miR-194 110749 Chaf1b aggUGUACCUCAACGACAAUGu |: | || | ||||||| gugAUUUCAAGCU-CUGUUACc 2 20 389 409 [mm9:16:93892952-93892972:+] 0.5862 145 7 -10.24 -0.1174 MIMAT0000235 mmu-miR-202-3p 110749 Chaf1b agaAGGGUAC--GCGAUAUGGAGa | | ||| : ||||||||| ugaUACAAUGUAUCCUAUACCUCg 2 20 849 872 [mm9:16:93893412-93893435:+] 0.5013 154 7 -15.87 -0.1418 MIMAT0000248 mmu-miR-30e 110749 Chaf1b gaaggUC-AGUUCCUACAAA-UGu || |: |||||||| || caagaAGUUUCCGGAUGUUUCACg 2 18 415 438 [mm9:16:93892978-93893001:+] 0.6586 120 0 -15.71 -0.3900 MIMAT0004576 mmu-miR-296-3p 110749 Chaf1b ccUCUCGGAGGUGGGUUGGGAg ||: ::| : :||||||| uaAGGCUUUGGGGUCAACCCUu 2 21 974 995 [mm9:16:93893537-93893558:+] 0.5013 148 7 -19.46 -0.1084 MIMAT0000514 mmu-miR-30c 110749 Chaf1b cgacUC-UCACA-UCCUACAAA-UGu || ||| | |||||||| || ggcaAGAAGUUUCCGGAUGUUUCACg 2 20 413 438 [mm9:16:93892976-93893001:+] 0.6586 125 0 -15.52 -0.3931 MIMAT0000515 mmu-miR-30d 110749 Chaf1b gaaggUC-AGCCCCUACAAA-UGu || |: |||||||| || caagaAGUUUCCGGAUGUUUCACg 2 18 415 438 [mm9:16:93892978-93893001:+] 0.6586 120 0 -15.71 -0.3870 MIMAT0000516 mmu-miR-148a 110749 Chaf1b uguuUCAA-GACAUCACGUGACu |||| | |||||||||| agucAGUUCCCUUAGUGCACUGu 2 19 119 141 [mm9:16:93892682-93892704:+] 0.5002 165 7 -22.47 -0.1345 MIMAT0000541 mmu-miR-96 110749 Chaf1b ucgUUUUUA-CACGAUCA-CGGUUu ||:: | ||| |:|| ||||| ucgAAGGCUGGUGAUGGUGGCCAAa 2 21 42 66 [mm9:16:93906304-93906328:+] 0.5362 127 0 -19.93 -0.7960 MIMAT0000567 mmu-miR-329 110749 Chaf1b uuuuuccAAUCGACCCACACAa ||||: ||||||| aagcucaUUAGUCAGGUGUGUc 2 16 943 964 [mm9:16:93893506-93893527:+] 0.5013 155 7 -15.18 -0.1707 MIMAT0000580 mmu-miR-148b 110749 Chaf1b uguuUCAAGACACU-ACGUGACu ||||| | | ||||||| agucAGUUCCCUUAGUGCACUGu 2 19 119 141 [mm9:16:93892682-93892704:+] 0.5002 157 7 -16.94 -0.1345 MIMAT0000590 mmu-miR-342-3p 110749 Chaf1b ugcccacgcuaaAGACACACUCu | |||||||| agaccagccugaUAUGUGUGAGa 2 12 1385 1407 [mm9:16:93893948-93893970:+] 0.5008 147 7 -17.94 -0.7186 MIMAT0000590 mmu-miR-342-3p 110749 Chaf1b ugccCACGCUAAAG-ACACACUCu || :|: | |||||||| ucacGUUUGGGCACAUGUGUGAGu 2 20 4 27 [mm9:16:93892567-93892590:+] 0.4991 146 7 -18.99 -0.1297 MIMAT0000659 mmu-miR-212 110749 Chaf1b accggcACUG---ACCUCUGACAAu |||| | :||||||| agagacUGACUUUUAUGGACUGUUg 2 17 1570 1594 [mm9:16:93894133-93894157:+] 0.5009 143 7 -16.47 -0.2757 MIMAT0000661 mmu-miR-214 110749 Chaf1b ugaCGGAC-AGACACGGACG-ACa ||||| | || ||||| || ---GCCUGCUAUGCACCUGCGUGc 2 20 1 21 [mm9:16:93906263-93906283:+] 0.5362 126 0 -19.02 -0.1472 MIMAT0000666 mmu-miR-320 110749 Chaf1b agCGGGAGAG---UUGGGUCGAAAa |::||: | :||:||||||| ucGUUCUUCCGAAGACUCAGCUUUa 2 21 453 477 [mm9:16:93893016-93893040:+] 0.6586 155 7 -23.71 -0.4531 MIMAT0000667 mmu-miR-33 110749 Chaf1b acGUUACGUUGAUG-UUACGUg :|:| : || || |||||| ucUAGUCUUACAACAAAUGCAu 2 20 1626 1647 [mm9:16:93894189-93894210:+] 0.5009 123 6 -11.51 -0.3162 MIMAT0000673 mmu-miR-181b 110749 Chaf1b uggGUGGCUGUCGUUACUU-ACAa || :||| | |||| ||| aggCAAAUGCAGAACUGAACUGUg 2 21 1069 1092 [mm9:16:93893632-93893655:+] 0.5013 120 0 -10.14 -0.1065 MIMAT0004684 mmu-miR-362-3p 110749 Chaf1b acuuAGGAACUUGUCCACACAa || || : ||||||||| aagcUCAUUAGUCAGGUGUGUc 2 19 943 964 [mm9:16:93893506-93893527:+] 0.5013 162 7 -16.15 -0.1740 MIMAT0004684 mmu-miR-362-3p 110749 Chaf1b acuuaggaacuugUCCACACAa |||||||| ucagguguguccaAGGUGUGUa 2 10 954 975 [mm9:16:93893517-93893538:+] 0.5013 145 7 -16.57 -0.3747 MIMAT0000741 mmu-miR-377 110749 Chaf1b ugUUUUCAACGGA--A-ACACACUa ||:| |||| | ||||||| ucAAGACCAGCCUGAUAUGUGUGAg 2 21 1382 1406 [mm9:16:93893945-93893969:+] 0.5008 150 7 -18.60 -0.3300 MIMAT0000741 mmu-miR-377 110749 Chaf1b uguUUUCAACGGAAACA-CACUa || ||| :| ||| |||| gccAACCUUGGUUCUGUAGUGAg 2 20 1358 1380 [mm9:16:93893921-93893943:+] 0.5008 123 0 -10.01 -0.1861 MIMAT0003169 mmu-miR-539 110749 Chaf1b ugUGUGGUUCCUAUUAAAGAGg | |:||:| |||||||| ggAAAUCAGG---AAUUUCUCa 2 21 1263 1281 [mm9:16:93893826-93893844:+] 0.5010 152 7 -14.35 -0.4150 MIMAT0003182 mmu-miR-494 110749 Chaf1b cucCAAAGGGCACAUACAAAGu |||||| | ||||||| gaaGUUUCC---GGAUGUUUCa 2 20 418 436 [mm9:16:93892981-93892999:+] 0.6586 155 7 -18.85 -0.2094 MIMAT0003184 mmu-miR-487b 110749 Chaf1b uucACCUACUGGGACAUGCUAa ||||| : ||||||||| ccuUGGAUAG--CUGUACGAUu 2 20 1712 1731 [mm9:16:93894275-93894294:+] 0.5009 160 7 -20.05 -0.2975 MIMAT0003730 mmu-miR-592 110749 Chaf1b ugUA-GUAGCGUAUA-ACUGUGUUa || | || || | ||||||| cuAUGCCUCACAGCUGAGACACAAu 2 22 1228 1252 [mm9:16:93893791-93893815:+] 0.5013 147 7 -14.05 -0.2575 MIMAT0003475 mmu-miR-146b 110749 Chaf1b ucggAUACCUU--AAGUCAAGAGu || |||| | |||||||| caaaUAGGGAACGUGCAGUUCUCu 2 19 1605 1628 [mm9:16:93894168-93894191:+] 0.5009 161 7 -17.46 -0.1574 MIMAT0003482 mmu-miR-499 110749 Chaf1b uuUGUAGUGACGUUCAGAAUu :|| : || | ||||||| guGCAGUUCU-CUAGUCUUAc 2 20 1617 1636 [mm9:16:93894180-93894199:+] 0.5009 149 7 -9.96 -0.2821 MIMAT0004847 mmu-miR-882 110749 Chaf1b ugaUUACGCGAUUGAGAGAGGa ||| |: || ||||||| uaaAAUCAGUCAA-UCUCUCCa 2 20 1443 1463 [mm9:16:93894006-93894026:+] 0.5008 153 7 -11.43 -0.8328 MIMAT0004869 mmu-miR-421 110749 Chaf1b cgcggguuAAUUACAGACAACUa ||| | ||||||| acugacuuUUAUGGACUGUUGAu 2 16 1574 1596 [mm9:16:93894137-93894159:+] 0.5009 151 7 -12.92 -0.3316 MIMAT0004941 mmu-miR-544 110749 Chaf1b cucgaacgauuUUUACGUCUUa |||||||||| cgccaacaggcAAAUGCAGAAc 2 12 1062 1083 [mm9:16:93893625-93893646:+] 0.5013 155 7 -12.96 -0.2709

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040267 Chaf1b Mus musculus 110749

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Chaf1b mmu-let-7a beg:2 end:22 pic:3' TTGATATGTTGGATG-ATGGAGT 5'& .||||.| ||||.| |.| &5' -GCTATGC-ACCTGCGTGC---- 3' Chaf1b mmu-miR-133b beg:45 end:67 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& .||||| ||| || |.||||| &5' -GGCTGG-TGATGGTGGCCAAA 3' Chaf1b mmu-miR-469 beg:15 end:32 pic:3' CCTGTGGTTCTAGTTAC--TTTCTCCGT 5'& .|| .|.|||||| &5' --------------GTGCAGAGGAGGCA 3' Chaf1b mmu-miR-511 beg:13 end:32 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& | |||||||| .||||| &5' -GCGTGCAGAG---GAGGCA- 3' Chaf1b mmu-miR-686 beg:14 end:33 pic:3' AGAAGTGGCA-GAC-CCTTCGTTA 5'& ||| | | |||.|||| &5' -------CGTGCAGAGGAGGCAA- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Chaf1b mmu-miR-133a 46 67 UGUCGACCAACUUCCCCUGGUU- :||||| ||| || |:|||| -AGGCUGG-UGAUGGUGGCCAAA Chaf1b mmu-miR-133b 46 67 AUCGACCAACUUCCCCUGGUU- :||||| ||| || |:|||| AGGCUGG-UGAUGGUGGCCAAA Chaf1b mmu-miR-135a 19 39 AGUGUAUCCUUAUUUUUCGGUAU :|| ||||: ||:|||| -UGCAGAGGAGGC-AAGGCCAA- Chaf1b mmu-miR-135b 19 39 GUGUAUCCUUACUUUUCGGUAU :|| ||||: ||:|||| UGCAGAGGAGGC-AAGGCCAA- Chaf1b mmu-miR-18 2 17 AUAGACGUGAUCUACGUGGAAU |||| |||||||| --CCUGCU----AUGCACCUG- Chaf1b mmu-miR-193 48 66 -GACC-CUGAAACAUCCGGUCAA |||| ||: || ||||| GCUGGUGAUG--GU-GGCCAA-- Chaf1b mmu-miR-217 1 25 UAGGUCAGU--CAAGGAC-UACGUCAU || | | | |||| :||||| -GCCUG-CUAUGCACCUGCGUGCAGA- Chaf1b mmu-miR-24* 2 33 UGACUAUA-GU---CGA--GUCA--UCCGUG ||| ||| || || ||| ||||| CCUGCUAUGCACCUGCGUGCAGAGGAGGCAA Chaf1b mmu-miR-293 4 24 UGUGAUGUUUGAGACGC-CGUGA :|||: || ||||| ||| -UGCUAUGCAC-CUGCGUGCAG- Chaf1b mmu-miR-324-3p 1 28 -GGUCGU--CGUGGAC-CCCGUCACC- || || ||||||| | |||| || GCCUGCUAUGCACCUGCGUGCAGAGGA Chaf1b mmu-miR-328 43 66 UGCCUUCC--CGUCUCUC-CCGGUC ||||| | || :| ||||| --CGAAGGCUGGUGAUGGUGGCCAA Chaf1b mmu-miR-338 38 60 AGUUGUUUUAGUGACUACGACCU |:| :| :|||:|| ||| -AAGCUCGAAGGCUGGUGAUGGU Chaf1b mmu-miR-346 24 57 -UCUCCG-UCCG----UGAGC--CCG-UCUGU- :||||| |||| :|||| ||| :| | AGGAGGCAAGGCCAAAGCUCGAAGGCUGGUGAU Chaf1b mmu-miR-412 46 63 UGCCGAUCACCUGGUCCACUUCA ||||:||| ||||: -AGGCUGGUGAU---GGUGGC-- Chaf1b mmu-miR-431 12 37 -GGACGUACUG--CCGGACGUUCUGU |||||:|| || |||||:| ACCUGCGUGCAGAGGAG-GCAAGGCC Chaf1b mmu-miR-469 9 33 CCUGUGGUUCUA-GUUACUUUCUCCGU- :|||| || :|:|||||| -UGCACCUGCGUGCA---GAGGAGGCAA Chaf1b mmu-miR-496 53 78 CUCUA--ACCGGUACAUUA-UGAGU- ||| |||||| ||| ||||| -UGAUGGUGGCCAAAUAAACACUCAU Chaf1b mmu-miR-501 10 29 AAAGUGGGUCCCUGUUUCCUAA ||||:: | :||:|||| --GCACCUGCGUGCAGAGGAG- Chaf1b mmu-miR-532 32 56 UGCCAGGAUGUGAG-UUCCG--UAC- || || :||| ||||| :|| -AGG-CCAAAGCUCGAAGGCUGGUGA Chaf1b mmu-miR-615 23 57 -UUCUCCC-UCUGGG--------UCCGAGC-CU- |:|||| ||:|| ||||| | || GAGGAGGCAAGGCCAAAGCUCGAAGGCUGGUGAU Chaf1b mmu-miR-681 4 32 UCGAC----GGACGGUCG----CUCCGAC ||| ||||| || ||||| UGCUAUGCACCUGCGUGCAGAGGAGGCA- Chaf1b mmu-miR-686 13 34 AGAAGUGGCA-GAC-CCUUCGUUA | ||| | | |||:|||| ---CCUGCGUGCAGAGGAGGCAAG Chaf1b mmu-miR-693-3p 32 53 AAUGUCGGUGUAGA-CUUUCGACG :|||| || |||:|||| ---AGGCCAAAGCUCGAAGGCUGG Chaf1b mmu-miR-700 4 22 CCACCUGAGCCAAGGGCGCAC- :|| | ||:||||| ----UGCUAUGCACCUGCGUGC Chaf1b mmu-miR-702 46 66 CUCGCCCCAUUUCCCACCCGU- :|| |||:| ||||| || AGGCU-GGUGAU-GGUGGCCAA Chaf1b mmu-miR-744 1 20 CGACAAUCGGGAU---CG-GGGCGU- |||: || ||:||: -------GCCUGCUAUGCACCUGCGU Chaf1b mmu-miR-9 16 42 -GUAUGUCGA-UCUA--UUGGUUUCU |:|:||| ||: ::|||||| GCGUGCAGAGGAGGCAAGGCCAAAGC Chaf1b mmu-miR-96 38 68 -UCGUUUUUACACGAUCA-------CGGUUU- ||| :|| |||:|| |||||| AAGCUCGAAG--GCUGGUGAUGGUGGCCAAAU Chaf1b mmu-miR-124a 4 25 cCG-UAAGUGG-CGCACGgaau || || |||| |||||| tGCTATGCACCTGCGTGCagag Chaf1b mmu-miR-132 32 54 gCUGGUACCGA-CAUCUGACAAu |:||| ||| | ||:||| | aGGCCAAAGCTCGAAGGCTGGTg Chaf1b mmu-miR-133a 45 65 UGUCGACCAACUUCCCCUGGUU | :||||| ||| || |:|||| AAGGCTGG-TGATGGTGGCCAA Chaf1b mmu-miR-135a 18 39 aguGUAUCCUUAUUUUUCGGUau || ||||: : ||:|||| gtgCAGAGGAG-GCAAGGCCAaa Chaf1b mmu-miR-135b 19 39 guGUAUCCUUACUUUUCGGUau || ||||: | ||:|||| tgCAGAGGAG-GCAAGGCCAaa Chaf1b mmu-miR-18 1 17 auaGACGUGAUCUACGUGGAau ||| || |||||||| -gcCTG--CT--ATGCACCTgc Chaf1b mmu-miR-193 49 67 GACC-CUGAAACAUCCGGUcaa |||| || | || ||||| CTGGTGA--TGGT-GGCCAaat Chaf1b mmu-miR-214 1 21 gaCGGACAGACAC--GGACG-ACa ||||| || || ||||| || --GCCTG-CTATGCACCTGCGTGc Chaf1b mmu-miR-217 1 25 uaGGUCAGU-CAAGGAC-UACGUCau || | :| | |||| :||||| -gCCTGCTATGCACCTGCGTGCAGag Chaf1b mmu-miR-293 3 24 uguGAUGUUUGAGACGC-CGUga |||:: || ||||| ||| ctgCTATGCAC-CTGCGTGCAga Chaf1b mmu-miR-324-3p 2 26 GGUCG-U-CGUGGACCC-CGUCACC || || | ||||||| | |||| || CCTGCTATGCACCTGCGTGCAGAGG Chaf1b mmu-miR-328 41 65 ugcCUUCC--CGUCUCUC-CCGGUc ||||| | || :| ||||| ctcGAAGGCTGGTGATGGTGGCCAa Chaf1b mmu-miR-338 29 53 aGUU--GUUUUAGUGACUACGACCu ||| | ||| | | | ||||| gCAAGGCCAAAGCTCGAAGGCTGGt Chaf1b mmu-miR-346 25 54 uCUCCG-UCCG----UGAGC--CCGUCugu ||||| |||| :|||| ||| | gGAGGCAAGGCCAAAGCTCGAAGGCTGgtg Chaf1b mmu-miR-412 37 58 ugcCGAUCACCUGGUCCACUUCa ||| | |:|: ||||| | aaaGCTCGAAGGCT-GGTGATGg Chaf1b mmu-miR-431 13 36 GGACGUACUGC-CGGACGUUCUGu |||||:|| | | |||||:| CCTGCGTGCAGAGGAGGCAAGGCc Chaf1b mmu-miR-469 8 31 ccuGUGGUUCUA-GUUACUUUCUCCGU |||| : :| || :|:|||||| atgCACCTGCGTGCA---GAGGAGGCA Chaf1b mmu-miR-496 52 76 CUCUA--ACCGGUACA-UUAUGAGU | ||| |||||| | || ||||| GTGATGGTGGCCAAATAAACACTCA Chaf1b mmu-miR-501 8 29 aAAGUGGGUCCCUGUUUCCUaa | ||||:: | :||:|||| aTGCACCTGCGTGCAGAGGAgg Chaf1b mmu-miR-532 31 52 UGCCAGGAUGUGAG-UUCCGuac | || || | :||| ||||| AAGG-CCAAAGCTCGAAGGCtgg Chaf1b mmu-miR-615 24 46 UUCUCC-CUCUGGGUCCGAGCcu |:|||| ||:|| | ||||| AGGAGGCAAGGCCAAAGCTCGaa Chaf1b mmu-miR-681 26 51 ucgacggaCGG--UC--GC-UCCGAC ||| || || |||||| gaggcaagGCCAAAGCTCGAAGGCTG Chaf1b mmu-miR-686 7 33 AGAAGUG---GCA-GAC-CCUUCGUUa | | ||| ||| | | |||:|||| TATGCACCTGCGTGCAGAGGAGGCAAg Chaf1b mmu-miR-693-3p 29 52 aaUGUCGGUGUAGA-CUUUCGACg | :|||| | || |||:|||| gcAAGGCCAAAGCTCGAAGGCTGg Chaf1b mmu-miR-700 1 20 ccaccuGAGCCAAGGGCGCAC || | ||:||||| -gcctgCTATGCACCTGCGTG Chaf1b mmu-miR-702 43 64 cucgCC--CCAUUUCCCACCCGU || ||| :| ||||| || cgaaGGCTGGT-GATGGTGGCCA Chaf1b mmu-miR-9 17 41 GUAUGUC-GAUC--UAUUGGUUUCu |:|:||| || | ::|||||| CGTGCAGAGGAGGCAAGGCCAAAGc Chaf1b mmu-miR-96 39 66 UCG---UUUUUA-CACGAUCA-CGGUUU ||| ||:: | ||| |:|| |||||| AGCTCGAAGGCTGGTGATGGTGGCCAAA Chaf1b mmu-miR-96 19 39 uCGUUUUUACACGAUCACGGUUU |||:|:: | || || |||||| tGCAGAGGAG-GCAAG-GCCAAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Chaf1b RAID00178646 mmu-miR-487b-3p miRNA MIMAT0003184 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00226486 mmu-miR-544-3p miRNA MIMAT0004941 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00242222 mmu-miR-329-3p miRNA MIMAT0000567 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00397956 mmu-miR-377-3p miRNA MIMAT0000741 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00418197 mmu-miR-194-5p miRNA MIMAT0000224 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00481187 mmu-miR-320-3p miRNA MIMAT0000666 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00529054 mmu-miR-214-3p miRNA MIMAT0000661 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00557989 mmu-miR-539-5p miRNA MIMAT0003169 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00573416 mmu-miR-30d-5p miRNA MIMAT0000515 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00648236 mmu-miR-146a-5p miRNA MIMAT0000158 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00766991 mmu-miR-153-3p miRNA MIMAT0000163 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID00770399 mmu-miR-146b-5p miRNA MIMAT0003475 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01198811 mmu-miR-30a-5p miRNA MIMAT0000128 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01474851 mmu-miR-96-5p miRNA MIMAT0000541 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01559894 mmu-miR-30c-5p miRNA MIMAT0000514 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01622044 mmu-miR-499-5p miRNA MIMAT0003482 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01639541 mmu-miR-132-3p miRNA MIMAT0000144 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01653667 mmu-miR-202-3p miRNA MIMAT0000235 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01778412 mmu-miR-152-3p miRNA MIMAT0000162 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID01872395 mmu-miR-128-3p miRNA MIMAT0000140 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02040225 mmu-miR-148b-3p miRNA MIMAT0000580 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02153591 mmu-miR-362-3p miRNA MIMAT0004684 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02435213 mmu-miR-181b-5p miRNA MIMAT0000673 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02604225 mmu-miR-185-5p miRNA MIMAT0000214 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02843190 mmu-miR-421-3p miRNA MIMAT0004869 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02905554 mmu-miR-882 miRNA MIMAT0004847 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID02936667 mmu-miR-212-3p miRNA MIMAT0000659 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03084331 mmu-miR-592-5p miRNA MIMAT0003730 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03115360 mmu-miR-30e-5p miRNA MIMAT0000248 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03136582 mmu-miR-148a-3p miRNA MIMAT0000516 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03205639 mmu-miR-494-3p miRNA MIMAT0003182 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03261284 mmu-miR-30b-5p miRNA MIMAT0000130 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03411835 mmu-miR-124-3p miRNA MIMAT0000134 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03450227 mmu-miR-296-3p miRNA MIMAT0004576 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03793361 mmu-miR-342-3p miRNA MIMAT0000590 Chaf1b mRNA 110749 Prediction 0.1828 Chaf1b RAID03850820 mmu-miR-33-5p miRNA MIMAT0000667 Chaf1b mRNA 110749 Prediction 0.1828