SNP - dbSNP |
dbSNP | Type | Alleles | Het | Se(het) | Fxn-class | Gene Name | Assembly | Chr-pos | Sequence | Entrez Gene |
rs3659701 | snp | C/T | 0.408163 | 0.193609 | intron-variant | Poc1a | GRCm38.p3 | 9:106346320 | GCAATGGAGAAAGTG[C/T]GTCTCGGTGTTACCA | 70235 |
rs3659746 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106346343 | TGTTACCAGCTGTGT[A/G]ACAAGGCCAGCCGGC | 70235 |
rs3659781 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106346360 | CAAGGCCAGCCGGCC[A/G]GCTGGCAGAGTCAGG | 70235 |
rs3659799 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106346367 | AGCCGGCCGGCTGGC[A/G]GAGTCAGGAGCTCTG | 70235 |
rs3661625 | snp | A/G | 0.5 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106346657 | ACACTCCAGGGAAGG[A/G]CATCGGATCCCATTA | 70235 |
rs3662086 | snp | C/T | 0.5 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106346714 | TTGCTAGGAATTGAA[C/T]TCATGCCCTCTGAAA | 70235 |
rs3691834 | snp | C/T | 0.5 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106344188 | CTTTAATCCCAGCAC[C/T]TGGGAGGCAGAGACA | 70235 |
rs3708712 | snp | A/T | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106335358 | TTTGAGGCTAGAGAG[A/T]CGTCTTAGCTGTTAA | 70235 |
rs3725061 | snp | A/G | 0.387812 | 0.208586 | intron-variant | Poc1a | GRCm38.p3 | 9:106348709 | CAGCTCATGCAGAAG[A/G]GGCCAGCCATCAGAT | 70235 |
rs6220244 | snp | A/G | 0.5 | 0 | intron-variant | Poc1a | Mm_Celera | 9:106319536 | GATGCCTGGGGTCTG[A/G]TCGGTGGCTCTGCCA | 70235 |
rs13480399 | snp | C/T | 0.496851 | 0.0395574 | missense | Poc1a | GRCm38.p3 | 9:106284925 | ATCTGGCACATGAAG[C/T]CCCAGTCACGTGCCT | 70235 |
rs29590171 | snp | C/T | 0.375 | 0.216506 | utr-variant-5-prime | Poc1a | GRCm38.p3 | 9:106281150 | TTTTTTTCAAGTTCT[C/T]AGGAGGAAAGTGTGA | 70235 |
rs29593680 | snp | A/G | 0.429688 | 0.173817 | intron-variant | Poc1a | GRCm38.p3 | 9:106282120 | CACTTCCTCACCCTT[A/G]TGTTTCTGAGAGGCT | 70235 |
rs29594423 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106324853 | CCCGTGCTAGTCTTA[C/T]GCAGTACAGGGATCA | 70235 |
rs29595994 | snp | A/G | 0.401235 | 0.199068 | intron-variant | Poc1a | GRCm38.p3 | 9:106341719 | TAAAATGAACAAAGG[A/G]GTTAGATGTGTGTAG | 70235 |
rs29598569 | snp | A/G | 0.265928 | 0.249492 | intron-variant | Poc1a | GRCm38.p3 | 9:106342577 | TGTCTTGGGTAGAAA[A/G]GGTATCACATCCTAG | 70235 |
rs29600569 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106308710 | GTGGCCTCCTGGCAG[A/G]AGGAAGCTGGCCTGA | 70235 |
rs29634066 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106323272 | TCCCTGCGTAGCTAA[A/G]GGCTGCTCGGGGACC | 70235 |
rs29637066 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106297929 | CTAGGCTGTCTGTGA[C/T]TTGAGAGTTTGTCAG | 70235 |
rs29641877 | snp | A/G | 0.5 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106318429 | CTTGCAGAGCCCAGT[A/G]CCCTAAAGGTGGTGG | 70235 |
rs29644228 | snp | A/G | 0.33241 | 0.236027 | utr-variant-5-prime | Poc1a | GRCm38.p3 | 9:106281252 | CCTATCGAACGACCC[A/G]ACTTCCGGTCGGCGG | 70235 |
rs29645459 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106299629 | GTTGTTGCTGTTCTC[C/T]GCTTTCAAGGTAGTA | 70235 |
rs29645543 | snp | C/T | 0.489796 | 0.070696 | intron-variant | Poc1a | GRCm38.p3 | 9:106289674 | CGTGAGATTCTGCTA[C/T]GATGTGTGGTTGATA | 70235 |
rs29645630 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106302068 | GCAGCTGGAAGCTAC[A/G]CTGCCGAAGGCCCAG | 70235 |
rs29646062 | snp | C/T | 0.408163 | 0.193609 | intron-variant | Poc1a | GRCm38.p3 | 9:106296090 | CCAGGGCTAAGGGCC[C/T]GGAGCCAGGTGTGGA | 70235 |
rs29646591 | snp | C/G | 0.375 | 0.216506 | intron-variant | Poc1a | Mm_Celera | 9:106283499 | AAAAAAAGAGAGAGA[C/G]AGAGACAGAGACAGA | 70235 |
rs29647353 | snp | G/T | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106341867 | TTCTAATAAGAGTCC[G/T]GGGGGGGGGGGAGAA | 70235 |
rs29647616 | snp | A/G | 0.5 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106343828 | GGATTAAAGGCCTGC[A/G]CCACCACCATCATGA | 70235 |
rs29687821 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106315488 | GCATTGCTGCCTTAG[A/G]GGCTTGTGTCTGCAT | 70235 |
rs29689211 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | Mm_Celera | 9:106287091 | CCCCACCCTTACCCC[A/G]TGGACAGCAGAAATC | 70235 |
rs29690133 | snp | A/G | 0 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106302911 | GAGCCTCCTGGCTGC[A/G]GGTGCATCCCTGAAG | 70235 |
rs29690625 | snp | A/G | 0.345679 | 0.230967 | upstream-variant-2KB | Poc1a | Mm_Celera | 9:106280846 | TAGGAGTATTCGCAG[A/G]AACGAACCATTCTGG | 70235 |
rs29691594 | snp | A/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106308078 | ATGTGACTCTTGAGA[A/T]AGTCACAGTGATCAG | 70235 |
rs29692815 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106342175 | CTATTCCCACCCCTA[C/T]GGTATGTGTTAAATA | 70235 |
rs29694788 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106294426 | ACCCATTGGGAACAG[A/G]GGGTGAAAAGGCTCC | 70235 |
rs29695848 | snp | C/T | 0.359862 | 0.224567 | upstream-variant-2KB | Poc1a | GRCm38.p3 | 9:106279753 | AGTAAAAATAAAAAG[C/T]CTGTGGCTGCCAGAG | 70235 |
rs29735439 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106304600 | GAAGCCAGAGCAGCA[C/T]ATCACCCAATGTTAG | 70235 |
rs29735687 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106316280 | TAGAACTAGGCAGGC[C/T]GACCTACAGTCTTCT | 70235 |
rs29736776 | snp | C/T | 0 | 0 | intron-variant | Poc1a | GRCm38.p3 | 9:106293321 | TGTCTGGGTGTCCCC[C/T]GAAGCCTGACATGTC | 70235 |
rs29738482 | snp | A/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106334320 | TCACAGGCTTGCTCC[A/T]GGGAGCCAGACTTCA | 70235 |
rs29740242 | snp | C/T | 0.345679 | 0.230967 | intron-variant | Poc1a | GRCm38.p3 | 9:106316714 | TTGGGAGCCCCACTT[C/T]TGCATGCGGAGAGAT | 70235 |
rs29741954 | snp | A/T | 0.32 | 0.24 | intron-variant | Poc1a | GRCm38.p3 | 9:106309493 | ACTTGTACTTTCATG[A/T]TATATGTATATACAC | 70235 |
rs29742945 | snp | A/G | 0 | 0 | upstream-variant-2KB | Poc1a | GRCm38.p3 | 9:106279826 | GCAGCAAACTGCTAC[A/G]GCTCGGGAATTTCCT | 70235 |
rs29744381 | snp | C/T | 0.375 | 0.216506 | upstream-variant-2KB | Poc1a | Mm_Celera | 9:106280944 | CAAGGCCAGTATCCT[C/T]CTTCCGGGATACTTA | 70235 |
rs29746480 | snp | C/T | 0.290657 | 0.246672 | intron-variant | Poc1a | GRCm38.p3 | 9:106343880 | TGTATCTTTTCCTAC[C/T]CAAGCACACTGGCCT | 70235 |
rs29782248 | snp | C/T | 0.401235 | 0.199068 | intron-variant | Poc1a | GRCm38.p3 | 9:106288491 | TTGGTGGGACCTTGG[C/T]CTCATGTTATCTTCC | 70235 |
rs29783171 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106312676 | AAAGTACTTTTAAAC[A/G]TCTTGTTTGTTTTGT | 70235 |
rs29785475 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106324882 | CAGATCAAGGGCCTT[A/G]TGTGTGCTAGGGAAG | 70235 |
rs29788281 | snp | G/T | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106308519 | ACATTCGGTATTCCT[G/T]AGTAAAAAGAATCTT | 70235 |
rs29793809 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106318977 | GCAGTTTCAGAGCCA[A/G]CCTGGGTCACATACG | 70235 |
rs29827347 | snp | A/G/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106319001 | ACATACGACTGGGAC[A/G/T]GGGGTGGGAGTAGGG | 70235 |
rs29835512 | snp | C/T | 0.391111 | 0.206368 | upstream-variant-2KB | Poc1a | GRCm38.p3 | 9:106280653 | AAGGCTAAAGAGTTC[C/T]GAGCAAGACAGGCCG | 70235 |
rs29836607 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106298207 | CAGCTGTCGCCATCC[C/T]ACACCCCACTCCCAG | 70235 |
rs29839134 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106316166 | GAGAGGCAATTGAAG[A/G]GAGGGATGTGGCTCT | 70235 |
rs29845237 | snp | A/C | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106299764 | TTTATAAGGCAGAGC[A/C]TGATGACTGGATTTT | 70235 |
rs29872867 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | Mm_Celera | 9:106330462 | AGCCGGGTGTGGTGG[C/T]GCATGCCTTTAATCC | 70235 |
rs29886185 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106319339 | TCCAGGAAGGAGAGG[C/T]CATGAGACCCCATGG | 70235 |
rs29889428 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106301926 | GCTTCGGGGAAGGAG[C/T]GGCCTGGCCTGCTGA | 70235 |
rs29891009 | snp | C/T | 0.345679 | 0.230967 | synonymous-codon, utr-variant-3-prime | Poc1a | GRCm38.p3 | 9:106349754 | CTGGAGAACCAGCAG[C/T]TAATCATGCAGAGAA | 70235 |
rs29892775 | snp | C/T | 0.265928 | 0.249492 | intron-variant | Poc1a | GRCm38.p3 | 9:106322068 | GTATTGCCTTTGGTC[C/T]CAAAACCCAGATTGC | 70235 |
rs29893167 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106297950 | AGTTTGTCAGCTGCT[A/G]CCAAGCAGGTTGGCT | 70235 |
rs29895324 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106320129 | GCCAGGGAGCGGGCG[C/T]GGGAGCGGGCAGCTG | 70235 |
rs29918403 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106339753 | TCCAGGACAGCCAGG[A/G]CTATATAGAGAAACC | 70235 |
rs29931607 | snp | G/T | 0.497041 | 0.0383476 | intron-variant | Poc1a | GRCm38.p3 | 9:106302203 | CAGGGCGCTAGGAGT[G/T]ATTGATCAAATGAAA | 70235 |
rs29932847 | snp | C/T | 0.375 | 0.216506 | upstream-variant-2KB | Poc1a | Mm_Celera | 9:106280588 | GATTGCTTCTTTCAC[C/T]TTTTTTTTTTTTTTT | 70235 |
rs29934033 | snp | A/C | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106293131 | GATATTGAGGAGAGG[A/C]TCGCCCCTCTGAGGG | 70235 |
rs29935237 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106325121 | CTCAGTGGTTAAGAG[C/T]ACTGACTGCTCTTCC | 70235 |
rs29936723 | snp | C/T | 0.387812 | 0.208586 | intron-variant | Poc1a | GRCm38.p3 | 9:106290463 | CACATGTGGGTCTGT[C/T]GGAGGCTCCTAGCAC | 70235 |
rs29938085 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106297787 | AAGGGGAGAATGTTA[C/T]AGGCGAACAGCCTTG | 70235 |
rs29938277 | snp | A/G | 0.387812 | 0.208586 | intron-variant | Poc1a | Mm_Celera | 9:106283625 | GCCAACAGTAAAGCG[A/G]CACATTTTCTTGTTT | 70235 |
rs29938579 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106320028 | AAAACAACCATCTAG[C/T]ATTGTTGGGAAGTAT | 70235 |
rs29939627 | snp | A/C | 0.32 | 0.24 | intron-variant | Poc1a | GRCm38.p3 | 9:106298520 | TGACCCTGTTCTGGC[A/C]TAGTAGGAGGGGCAC | 70235 |
rs29944796 | snp | C/T | 0.345679 | 0.230967 | upstream-variant-2KB | Poc1a | GRCm38.p3 | 9:106279830 | CAAACTGCTACGGCT[C/T]GGGAATTTCCTGAGA | 70235 |
rs29946562 | snp | A/C | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106297791 | GGAGAATGTTACAGG[A/C]GAACAGCCTTGAATA | 70235 |
rs29964037 | snp | C/G | 0.5 | 0 | intron-variant | Poc1a | Mm_Celera | 9:106313019 | AATTAACCTTGGTCT[C/G]TGGGTTGAGGGCGTC | 70235 |
rs29971784 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106320140 | GGCGTGGGAGCGGGC[A/G]GCTGGTGCTGGCAGA | 70235 |
rs29974740 | snp | C/T | 0.415225 | 0.187619 | intron-variant | Poc1a | Mm_Celera | 9:106313123 | CGACCAACCAGTGGC[C/T]GGATCTCTGAGGTCT | 70235 |
rs29976313 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | Mm_Celera | 9:106309404 | ATGCAAGTATTGAGC[A/G]TATTTCTCCTGCCCC | 70235 |
rs29981780 | snp | G/T | 0.495868 | 0.0452663 | intron-variant | Poc1a | GRCm38.p3 | 9:106301423 | GTCTGGATGGGCTGC[G/T]TAAGGGTAACATGGT | 70235 |
rs29990971 | snp | G/T | 0.375 | 0.216506 | intron-variant | Poc1a | Mm_Celera | 9:106321853 | TAGCCCCCACTCTAG[G/T]GATTGGAGAATGGTT | 70235 |
rs30030640 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106322836 | GTGTGTGCACACACA[C/T]GTGTGCGCATGTCCA | 70235 |
rs30030887 | snp | C/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106301097 | TCTAGCAACCCGAGT[C/G]GAGAGCTGGGAGCAG | 70235 |
rs30031838 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106301682 | AGTAGTCCTGCTTCC[A/G]CATGTGTGCCATGGT | 70235 |
rs30037607 | snp | A/G | 0.493827 | 0.0552116 | intron-variant | Poc1a | GRCm38.p3 | 9:106289637 | GCAAATAGAGGAGGG[A/G]CATTTGAGAGGACAA | 70235 |
rs30038713 | snp | A/G | 0.415225 | 0.187619 | intron-variant | Poc1a | GRCm38.p3 | 9:106322888 | TTCAGCCTTTCTTTG[A/G]AAACTCAGTGAGATG | 70235 |
rs30044997 | snp | C/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106309283 | GGCTGCTTGACAGCT[C/G]TTCTCATCCTAGGAA | 70235 |
rs30087057 | snp | A/G | 0.415225 | 0.187619 | intron-variant | Poc1a | GRCm38.p3 | 9:106319175 | GACCCAACTCTTCCT[A/G]GAGCTATAGTGCCTA | 70235 |
rs30088320 | snp | G/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106330269 | GTTCCTCATGGACCA[G/T]GTCCTTTCACTGGAT | 70235 |
rs30088615 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106322831 | GGTGTGTGTGTGCAC[A/G]CACATGTGTGCGCAT | 70235 |
rs30090349 | snp | C/T | 0.465374 | 0.126941 | intron-variant | Poc1a | GRCm38.p3 | 9:106349572 | AGCATAGCCCACTGG[C/T]GGGAAGCGAGGCACC | 70235 |
rs30090405 | snp | A/G | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106301124 | GCAGGGTCCTGCCCG[A/G]GTCAGGGTTGAGAGA | 70235 |
rs30090875 | snp | C/T | 0.265928 | 0.249492 | intron-variant | Poc1a | GRCm38.p3 | 9:106316408 | TCTATAATCTAGTAG[C/T]TTGTTCTTGAAGCTC | 70235 |
rs30125551 | snp | C/T | 0.33241 | 0.236027 | intron-variant | Poc1a | GRCm38.p3 | 9:106341671 | AGAGTCAAAACCATG[C/T]GATAGGGAGATTAAT | 70235 |
rs30129577 | snp | G/T | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106341945 | CCAGAGAGACCTCCT[G/T]GGGGGAGCCCAAATC | 70235 |
rs30135862 | snp | C/T | 0.401235 | 0.199068 | intron-variant | Poc1a | GRCm38.p3 | 9:106315599 | ATCCAGAAACAGGAC[C/T]GGGATGTCAGGTAAT | 70235 |
rs30138428 | snp | C/T | 0.444444 | 0.157135 | intron-variant | Poc1a | Mm_Celera | 9:106308555 | TTGTAAAATAAATAA[C/T]TGGGTGAAAAATGAT | 70235 |
rs30139462 | snp | C/T | 0.32 | 0.24 | intron-variant | Poc1a | GRCm38.p3 | 9:106300201 | CTGAGTGGACACTGC[C/T]GCTCTGTCACTCACT | 70235 |
rs30140133 | snp | C/T | 0.375 | 0.216506 | intron-variant | Poc1a | GRCm38.p3 | 9:106321916 | CAGGAGTGGCTATCT[C/T]GGCCCTGGGCCAATC | 70235 |
rs30140605 | snp | C/T | 0.32 | 0.24 | intron-variant | Poc1a | GRCm38.p3 | 9:106342694 | CAGGGAAGGCGTGGG[C/T]CCGTAAGGCTGGTGT | 70235 |
rs30170435 | snp | A/G | 0.444444 | 0.157135 | intron-variant | Poc1a | GRCm38.p3 | 9:106288130 | TGAGCAGTGTCCCAG[A/G]CCCACGGGCAGCCAC | 70235 |