DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Phf10 ATTTA 300-1532 1572-1576;1576-1580

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004574 mmu-miR-294* 72057 Phf10 ucuaucccggaGGUAAAACUca |: |||||| gccaauaaaaaCUUUUUUGAaa 3 12 67 88 [mm9:17:15082016-15082037:-] 0.6053 123 0 -4.22 -0.3625 MIMAT0000549 mmu-miR-322* 72057 Phf10 cacaacgucgcGAAGUACAAa | ||||||| uaggcuuugacCCUCAUGUUu 2 11 3 23 [mm9:17:15082081-15082101:-] 0.6081 142 7 -11.65 -1.1004 MIMAT0004640 mmu-miR-325 72057 Phf10 aacuauccuccacgaGUUAUUu |||||| cuuucauuuuuaugcCAAUAAa 2 8 54 75 [mm9:17:15082029-15082050:-] 0.6053 120 6 -8.67 -0.4967 MIMAT0000569 mmu-miR-330* 72057 Phf10 agagacguccgggacaCGAAACg |||||| -----------aauagGCUUUGa 2 8 1 12 [mm9:17:15082092-15082103:-] 0.6214 120 6 -12.10 -0.1230 MIMAT0004660 mmu-miR-19a* 72057 Phf10 caUCAC-GUU-GAU--ACGUUUUGAu :||| ||| :|| | ||| ||| uuGGUGCCAAUUUAUUUACAACACUu 2 21 31 56 [mm9:17:15082048-15082073:-] 0.6053 121 0 -10.81 -0.1463 MIMAT0004660 mmu-miR-19a* 72057 Phf10 caucacguugauacgUUUUGAu |||||| auuuuuaugccaauaAAAACUu 2 8 59 80 [mm9:17:15082024-15082045:-] 0.6053 120 6 -7.70 -0.4178 MIMAT0004786 mmu-miR-540-5p 72057 Phf10 ugucucaGUCUCCCACUGGGAac :||: ||||||| -----aaUAGGCUUUGACCCUca 3 17 1 18 [mm9:17:15082086-15082103:-] 0.6081 128 0 -14.72 -0.3180 MIMAT0003728 mmu-miR-374* 72057 Phf10 gagccuguuacuauuAUGUUGg |||||| uggugccaauuuauuUACAACa 2 8 32 53 [mm9:17:15082051-15082072:-] 0.6053 120 6 -11.74 -0.1804 MIMAT0004822 mmu-miR-770-5p 72057 Phf10 gcACCGGGUCUGUGCACCACGa || :: :||:|: |||||| caUGUUUGGGAUAUUUGGUGCc 2 21 17 38 [mm9:17:15082066-15082087:-] 0.5935 132 6 -18.01 -0.1879 MIMAT0005293 mmu-miR-467e 72057 Phf10 ugUAUAUGUACGAGUGUGAAua || ||: | | |||||| caAUUUAUUUAC-AACACUUuc 3 21 38 58 [mm9:17:15082046-15082066:-] 0.6053 130 0 -7.72 -0.3079 MIMAT0005830 mmu-miR-466l 72057 Phf10 uuAUACA-CACG--UACAUAAAUau ||| | |||| || |||||| gaUAUUUGGUGCCAAUUUAUUUAca 3 21 26 50 [mm9:17:15082054-15082078:-] 0.5935 142 0 -7.75 -0.1259 MIMAT0005836 mmu-miR-1186 72057 Phf10 guACGG--AAAUUAAGGUCGUGAg |||| |||| || || |||| ggUGCCAAUUUAUUUACAACACUu 2 21 33 56 [mm9:17:15082048-15082071:-] 0.6053 139 0 -13.38 -0.1553 MIMAT0005855 mmu-miR-467h 72057 Phf10 ugUAUAUGUACGUGUGUGAAua || ||: | || |||||| caAUUUAUUUACA-ACACUUuc 3 21 38 58 [mm9:17:15082046-15082066:-] 0.6053 138 0 -9.64 -0.2882 MIMAT0012773 mmu-miR-767 72057 Phf10 acgagucuguugguACCACGu |||||| auguuugggauauuUGGUGCc 2 8 18 38 [mm9:17:15082066-15082086:-] 0.5935 120 6 -16.10 -0.1844 MIMAT0000127 mmu-miR-29b 72057 Phf10 uuguGACUAAAGUUUACCACGau :||: | | |||||| auguUUGGGAU-AUUUGGUGCca 3 20 18 39 [mm9:17:15082065-15082086:-] 0.5935 121 0 -12.88 -0.2384 MIMAT0000211 mmu-miR-182 72057 Phf10 gccacacucaagaugguaACGGUUu |||||| acaacacuuucauuuuuaUGCCAAu 2 8 48 72 [mm9:17:15082032-15082056:-] 0.6053 120 6 -10.80 -0.4659 MIMAT0000385 mmu-miR-106a 72057 Phf10 gauggacgugacaaucGUGAAAc |||||| gccaauuuauuuacaaCACUUUc 2 8 36 58 [mm9:17:15082046-15082068:-] 0.6053 120 6 -6.72 -0.3659 MIMAT0000386 mmu-miR-106b 72057 Phf10 uagACGUGACAGUCGUGAAAu | :|:| || |||||| caaUUUAUUUACAACACUUUc 2 19 38 58 [mm9:17:15082046-15082066:-] 0.6053 126 6 -7.67 -0.3659 MIMAT0000529 mmu-miR-20a 72057 Phf10 gauggacgugauauucGUGAAAu |||||| gccaauuuauuuacaaCACUUUc 2 8 36 58 [mm9:17:15082046-15082068:-] 0.6053 120 6 -7.54 -0.3659 MIMAT0000535 mmu-miR-29a 72057 Phf10 auuggcUAAAGUCU----ACCACGau :||| :|| |||||| ccucauGUUUGGGAUAUUUGGUGCca 3 17 14 39 [mm9:17:15082065-15082090:-] 0.5935 123 0 -12.92 -0.2384 MIMAT0000536 mmu-miR-29c 72057 Phf10 auuggCUAAAGUUUACCACGau ||| |: |||||| uuuggGAUAUU---UGGUGCca 3 18 21 39 [mm9:17:15082065-15082083:-] 0.5935 121 0 -12.44 -0.2222 MIMAT0000540 mmu-miR-93 72057 Phf10 gauggACGUGCUUGUCGUGAAAc | :|: ||| |||||| gccaaUUUAUUUACAACACUUUc 2 19 36 58 [mm9:17:15082046-15082068:-] 0.6053 126 6 -10.40 -0.3718 MIMAT0000541 mmu-miR-96 72057 Phf10 ucguUUUUACACGAUCACGGUUu :::|| | :|:||||||| guuuGGGAUAU-UUGGUGCCAAu 2 20 20 41 [mm9:17:15082063-15082084:-] 0.5935 153 7 -14.07 -0.8700 MIMAT0000541 mmu-miR-96 72057 Phf10 ucguuuuuacacgaucACGGUUu |||||| aacacuuucauuuuuaUGCCAAu 2 8 50 72 [mm9:17:15082032-15082054:-] 0.6053 120 6 -9.62 -0.4659 MIMAT0000649 mmu-miR-17 72057 Phf10 gauggacgugacauucGUGAAAc |||||| gccaauuuauuuacaaCACUUUc 2 8 36 58 [mm9:17:15082046-15082068:-] 0.6053 120 6 -6.83 -0.3659 MIMAT0003187 mmu-miR-20b 72057 Phf10 gauggacgugauacucGUGAAAc |||||| gccaauuuauuuacaaCACUUUc 2 8 36 58 [mm9:17:15082046-15082068:-] 0.6053 120 6 -7.42 -0.3659 MIMAT0003450 mmu-miR-488 72057 Phf10 cugguucuuugucgGAAAGUu |||||| auuuauuuacaacaCUUUCAu 2 8 40 60 [mm9:17:15082044-15082064:-] 0.6053 120 6 -7.67 -0.2347 MIMAT0004896 mmu-miR-590-3p 72057 Phf10 ugaUCGAAUAUGUAUUUUAAu | ||| | |:||||| aaaAACUUUU--UUGAAAUU- 2 19 73 90 [mm9:17:15082014-15082031:-] 0.6053 127 0 -3.18 -0.1326

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G039300 Phf10 Mus musculus 72057

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Phf10 mmu-miR-182 beg:17 end:41 pic:3' GCCACACTCAAGATGGTA-ACGGTTT 5'& || ||.| ||.. |||||| &5' --GTTTGGGA--TATTTGGTGCCAA- 3' Phf10 mmu-miR-1937a beg:12 end:29 pic:3' ACCCCCGAG--CAGGCCCTAA 5'& ||| ||..||||| &5' ------CTCATGTTTGGGAT- 3' Phf10 mmu-miR-290-5p beg:7 end:27 pic:3' TTTCAC-GGGGGTATCAAACTCA 5'& || |||.||| |||||.| &5' ----TGACCCTCAT-GTTTGGG- 3' Phf10 mmu-miR-292-5p beg:8 end:27 pic:3' GTTTTCTCGGGGGT-CAAACTCA 5'& || |||.|| |||||.| &5' -----GA-CCCTCATGTTTGGG- 3' Phf10 mmu-miR-293star beg:12 end:27 pic:3' GTTTTACAGTGTGTCAAACTCA 5'& | ||. |||||.| &5' --------CTCAT-GTTTGGG- 3' Phf10 mmu-miR-295star beg:7 end:27 pic:3' CTTCACAC-GGG-GTGTAAACTCA 5'& || ||| ||..||||.| &5' ------TGACCCTCATGTTTGGG- 3' Phf10 mmu-miR-322star beg:3 end:24 pic:3' CACAACGTCGCGA--AGTACAAA 5'& || .| |||||||| &5' -----GCTTTGACCCTCATGTTT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Phf10 mmu-miR-292-5p 10 28 GUUUUCUCGGGGGU-CAAACUCA || |||:|| |||||:| ----UGA-CCCUCAUGUUUGGGA Phf10 mmu-miR-29b 10 39 -UUGUGAC--UAAAGUUU----ACCACGAU :|| || :||| ::| |||||| UGACCCUCAUGUUUGGGAUAUUUGGUGCC- Phf10 mmu-miR-464 14 38 AUAGAGUG----UCUUAUUUGAACCAU- ||||: :|:|| |:|||||: --CCUCAUGUUUGGGAU--AUUUGGUGC Phf10 mmu-miR-540 2 40 GGUCCU-AGCUGG---------------AGAC--UGGA :||| |:|||| |:|| :|| AUAGGCUUUGACCCUCAUGUUUGGGAUAUUUGGUGCCA Phf10 mmu-miR-680 12 40 -GGGGGUACAG--UCGU----CUACGGG |||:|||||: :| |:|||| ACCCUCAUGUUUGGGAUAUUUGGUGCCA Phf10 mmu-miR-92 2 39 -GUCCGG---------------CCCUGU---UCACGUUAU :||||: ||||:| :|||| AUAGGCUUUGACCCUCAUGUUUGGGAUAUUUGGUGCC--- Phf10 mmu-miR-292-5p 6 27 guuuuCUCGGGGGU-CAAACUCa || |||:|| |||||:| gctttGA-CCCTCATGTTTGGGa Phf10 mmu-miR-29b 11 39 uUGUGACU--AAAGUUU----ACCACGau || || | ||| ::| |||||| gACCCTCATGTTTGGGATATTTGGTGCca Phf10 mmu-miR-464 12 36 auaGAGU----GUCUUAUUUGAACCAu |||| ::|:|| |:||||| accCTCATGTTTGGGAT--ATTTGGTg Phf10 mmu-miR-540 1 15 gguccUAGCUGGAGACUGGa || |: ||:||||| ----aATAGG-CTTTGACCc Phf10 mmu-miR-680 13 39 GGGGGUACAGUC------GUCUACGGg |||:|||||: | : |:|||| CCCTCATGTTTGGGATATTTGGTGCCa Phf10 mmu-miR-92 17 42 GU-CCGGCCCUGU---UCAC-GUUAu || | ::||||:| :||| |||| CATGTTTGGGATATTTGGTGCCAATt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Phf10 RAID00008785 mmu-miR-96-5p miRNA MIMAT0000541 Phf10 mRNA 72057 Prediction 0.2455 Phf10 RAID00402758 mmu-miR-29c-3p miRNA MIMAT0000536 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID00664016 mmu-miR-125a-5p miRNA MIMAT0000135 Phf10 mRNA 72057 RIP-seq//RNA-seq 0.6606 Phf10 RAID00682575 mmu-miR-106a-5p miRNA MIMAT0000385 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID00722066 mmu-miR-183-5p miRNA MIMAT0000212 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID00959019 mmu-miR-6375 miRNA MIMAT0025119 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID01263267 mmu-miR-488-3p miRNA MIMAT0003450 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID01723477 mmu-miR-325-3p miRNA MIMAT0004640 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID01834148 mmu-miR-590-3p miRNA MIMAT0004896 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02195694 mmu-mir-325 miRNA MI0000597 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02216715 mmu-miR-93-5p miRNA MIMAT0000540 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02420261 mmu-miR-106b-5p miRNA MIMAT0000386 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02426086 mmu-miR-125b-5p miRNA MIMAT0000136 Phf10 mRNA 72057 RIP-seq//RNA-seq 0.6606 Phf10 RAID02546783 mmu-miR-20b-5p miRNA MIMAT0003187 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02649600 mmu-miR-29a-3p miRNA MIMAT0000535 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02737448 mmu-miR-20a-5p miRNA MIMAT0000529 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02886792 mmu-miR-17-5p miRNA MIMAT0000649 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID02987932 mmu-miR-182-5p miRNA MIMAT0000211 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID03226455 mmu-miR-136-3p miRNA MIMAT0004532 Phf10 mRNA 72057 Prediction 0.1828 Phf10 RAID03829465 mmu-miR-29b-3p miRNA MIMAT0000127 Phf10 mRNA 72057 Prediction 0.1828