DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Stambpl1; Amshlp ATTTA 413-1723 1807-1811;1836-1840 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambpl1; Amshlp WTATTTATW 413-1723 1805-1813;1834-1842 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambpl1; Amshlp WWATTTAWW 413-1723 1805-1813;1834-1842 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambpl1; Amshlp WWTATTTATWW 413-1723 1804-1814 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambpl1; Amshlp WWWATTTAWWW 413-1723 1804-1814 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambpl1; Amshlp WWWTATTTATWWW 413-1723 1803-1815 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! Stambpl1; Amshlp WWWWATTTAWWWW 413-1723 1803-1815 Genome-wide analysis identifies interleukin-10 mRNA as target of#J Biol Chem 2008; 283(17): 11689-99.!Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.!

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000154 mmu-miR-142-5p 76630 Stambpl1 ucaUCACGAAAGAUGAAAUAc |||| | ||:||||| agaAGUGACUGAUAUUUUAUa 2 19 64 84 [mm9:19:34314627-34314647:+] 0.6723 142 0 -11.36 -0.1646 MIMAT0000367 mmu-miR-291a-5p 76630 Stambpl1 ucucucCCGGAGGUGAAACUAc | || |||||||| auuuuaGACCAAAACUUUGAUa 2 17 92 113 [mm9:19:34314655-34314676:+] 0.6723 148 7 -11.31 -1.3447 MIMAT0004574 mmu-miR-294* 76630 Stambpl1 ucUAUCCCGGA-G-GUAAAACUca || | |:| | |||||||| uuAUUGUUCUUGCACAUUUUGAag 3 21 115 138 [mm9:19:34314678-34314701:+] 0.6723 134 0 -10.01 -0.1917 MIMAT0000378 mmu-miR-300 76630 Stambpl1 cuucucucgAACGGGAACGUau |||::|||||| ugauauuuaUUGUUCUUGCAca 3 14 109 130 [mm9:19:34314672-34314693:+] 0.6723 137 0 -13.72 -0.6899 MIMAT0004620 mmu-let-7a* 76630 Stambpl1 ccUUUCUGUCAUCUAACAUAUc |: ||| | | ||| |||| gaAGUGACUG-AUAUUUUAUAu 2 21 65 85 [mm9:19:34314628-34314648:+] 0.6723 126 0 -4.25 -0.1382 MIMAT0005439 mmu-let-7c-2* 76630 Stambpl1 ccUUUCUGUCAUCUAACAUAUc |: ||| | | ||| |||| gaAGUGACUG-AUAUUUUAUAu 2 21 65 85 [mm9:19:34314628-34314648:+] 0.6723 126 0 -4.25 -0.1382 MIMAT0004623 mmu-let-7f* 76630 Stambpl1 ccCUUCCGUUA-UCUAACAUAUc |||| | | | ||| |||| caGAAGUGACUGAUAUUUUAUAu 2 21 63 85 [mm9:19:34314626-34314648:+] 0.6723 127 0 -3.84 -0.1423 MIMAT0004643 mmu-miR-331-5p 76630 Stambpl1 ccuagggaccCUGGUAUGGAUc | |:||||||| gugguguucaGCCUAUACCUAu 2 13 187 208 [mm9:19:34314750-34314771:+] 0.5829 148 7 -14.15 -0.8153 MIMAT0004647 mmu-miR-338-5p 76630 Stambpl1 gugagucgugguccuAUAACAa |||||| caaaacuuugauauuUAUUGUu 2 8 101 122 [mm9:19:34314664-34314685:+] 0.6723 120 6 -8.33 -0.2228 MIMAT0004659 mmu-miR-10a* 76630 Stambpl1 auaaggggaucuauGCUUAAAc ||||||| acgugugugacugcCGAAUUUc 2 9 29 50 [mm9:19:34314592-34314613:+] 0.6044 140 7 -7.60 -0.4488 MIMAT0004660 mmu-miR-19a* 76630 Stambpl1 caucacguugauacGUUUUGAu ||||||| uauauauuuuagacCAAAACUu 2 9 87 108 [mm9:19:34314650-34314671:+] 0.6723 140 7 -7.39 -1.2312 MIMAT0004663 mmu-miR-200c* 76630 Stambpl1 gguuugugacgaccCAUUCUGc ||||||| --caugcccuaacuGUAAGACc 2 9 1 20 [mm9:19:34314564-34314583:+] 0.6125 140 7 -10.26 -1.0198 MIMAT0001637 mmu-miR-452 76630 Stambpl1 cagagucaAAGGAGACGUUUGu || : |||||||: gaaauaaaUUGUGCUGCAAAUa 2 15 233 254 [mm9:19:34314796-34314817:+] 0.5829 134 0 -11.95 -0.1339 MIMAT0003189 mmu-miR-291b-5p 76630 Stambpl1 ccucucCCGGAGGUGAAACUAg | || |||||||| auuuuaGACCAAAACUUUGAUa 2 17 92 113 [mm9:19:34314655-34314676:+] 0.6723 148 7 -13.26 -1.3447 MIMAT0003732 mmu-miR-668 76630 Stambpl1 ccaucacccggcucggcUCACUGu |||||| cuuaugauguuuucagaAGUGACu 2 8 50 73 [mm9:19:34314613-34314636:+] 0.6723 120 6 -9.85 -0.1571 MIMAT0003457 mmu-miR-680 76630 Stambpl1 ggggguacagucguCUACGGg |||||| uaauauacccaaguGAUGCCa 2 8 209 229 [mm9:19:34314772-34314792:+] 0.5829 120 6 -18.48 -0.1036 MIMAT0003474 mmu-miR-694 76630 Stambpl1 gaAGUCCGUUGUAAAAGUc || ::|::|||||| uuUCUUAUGAUGUUUUCAg 2 18 47 65 [mm9:19:34314610-34314628:+] 0.6723 133 6 -10.70 -0.1936 MIMAT0003476 mmu-miR-669b 76630 Stambpl1 uguacguguacguguGUUUUGa |||||| uuauauauuuuagacCAAAACu 2 8 86 107 [mm9:19:34314649-34314670:+] 0.6723 120 6 -9.21 -0.4486 MIMAT0004827 mmu-miR-297b-3p 76630 Stambpl1 auacCCAUACACACAUACAUAu | ||| | | ||| ||| gacuGAUAU-UUUAUAUUUAUa 2 19 70 90 [mm9:19:34314633-34314653:+] 0.6723 120 0 -0.73 -0.2775 MIMAT0003485 mmu-miR-455* 76630 Stambpl1 gcuacaucagguuucCGUGUAu |||||| auauuuauuguucuuGCACAUu 2 8 111 132 [mm9:19:34314674-34314695:+] 0.6723 120 6 -10.03 -0.3003 MIMAT0003511 mmu-miR-450b-5p 76630 Stambpl1 auaaguccUUGUAUGACGUUUu | ::|:||||||| ggaaauaaAUUGUGCUGCAAAu 2 15 232 253 [mm9:19:34314795-34314816:+] 0.5829 150 7 -12.50 -0.7765 MIMAT0004864 mmu-miR-297a* 76630 Stambpl1 auacCCAUACACACAUACAUAu | ||| | | ||| ||| gacuGAUAU-UUUAUAUUUAUa 2 19 70 90 [mm9:19:34314633-34314653:+] 0.6723 120 0 -0.73 -0.2775 MIMAT0004866 mmu-miR-297c* 76630 Stambpl1 auacCCAUACACACAUACAUAu | ||| | | ||| ||| gacuGAUAU-UUUAUAUUUAUa 2 19 70 90 [mm9:19:34314633-34314653:+] 0.6723 120 0 -0.73 -0.2775 MIMAT0004884 mmu-miR-466h 76630 Stambpl1 auguguguuCGUGUACGUGUGu |: | ||||||: auauuuauuGUUCUUGCACAUu 2 14 111 132 [mm9:19:34314674-34314695:+] 0.6723 129 0 -9.72 -0.2614 MIMAT0004892 mmu-miR-568 76630 Stambpl1 cacacAUAUGUAAAUAUGUa | ||:|||||||:| gauauUUUAUAUUUAUAUAu 2 16 74 93 [mm9:19:34314637-34314656:+] 0.6723 147 0 -9.95 -0.1815 MIMAT0004938 mmu-miR-875-3p 76630 Stambpl1 guaucGGAGU-C-AUAAAAGUCc :||:| | |:||||||| gaauuUCUUAUGAUGUUUUCAGa 2 17 44 66 [mm9:19:34314607-34314629:+] 0.6723 150 7 -12.49 -1.1785 MIMAT0005830 mmu-miR-466l 76630 Stambpl1 uuauacacacguACAUAAAUAu | ||||||| ugacugauauuuUAUAUUUAUa 2 11 69 90 [mm9:19:34314632-34314653:+] 0.6723 142 7 -4.56 -1.3458 MIMAT0005830 mmu-miR-466l 76630 Stambpl1 uuauacacacguAC-AUAAAUAu || ||||||| agaccaaaacuuUGAUAUUUAUu 2 11 97 119 [mm9:19:34314660-34314682:+] 0.6723 141 7 -3.70 -1.1828 MIMAT0005839 mmu-miR-669f 76630 Stambpl1 uaugcacacACACAUACAUAUAc | | ||| ||||| gacugauauUUUAUAUUUAUAUa 2 15 70 92 [mm9:19:34314633-34314655:+] 0.6723 122 0 -0.95 -0.2434 MIMAT0005848 mmu-miR-466j 76630 Stambpl1 aaUGUGUGU-ACGUGUACGUGUGu |:|: :| ||: | ||||||: ugAUAUUUAUUGUUCUUGCACAUu 2 22 109 132 [mm9:19:34314672-34314695:+] 0.6723 140 0 -12.27 -0.2568 MIMAT0005854 mmu-miR-467g 76630 Stambpl1 uaUAU-ACACACACAUACAUAu ||| | | | | ||| ||| ugAUAUUUUAUAUUUAUAUAUu 2 20 73 94 [mm9:19:34314636-34314657:+] 0.6723 122 0 -0.16 -0.1289 MIMAT0007869 mmu-miR-1899 76630 Stambpl1 ccUUCGUCUAAGCCGGUAGCga |||: ||| ||||||| ccAAGU-GAU---GCCAUCGga 3 21 217 234 [mm9:19:34314780-34314797:+] 0.5829 130 0 -15.44 -0.2013 MIMAT0007872 mmu-miR-1906 76630 Stambpl1 ucgggacggaguccgACGACGu |||||| aucggaaauaaauugUGCUGCa 2 8 229 250 [mm9:19:34314792-34314813:+] 0.5829 120 6 -15.33 -0.4961 MIMAT0007876 mmu-miR-1907 76630 Stambpl1 uggaggUCUAGGAGACGACGag | | :| |||||| ucggaaAUAAAUUGUGCUGCaa 3 17 230 251 [mm9:19:34314793-34314814:+] 0.5829 124 0 -13.83 -0.2209 MIMAT0009394 mmu-miR-1931 76630 Stambpl1 cgGUAGCGUGGUCGGGAACGUa :||: :|:: |::|||||| gaUAUU-UAUU-GUUCUUGCAc 2 21 110 129 [mm9:19:34314673-34314692:+] 0.6723 132 6 -13.75 -0.4970 MIMAT0009407 mmu-miR-1942 76630 Stambpl1 guuGGUCUAC-UUCU-GUAGACu |:| || |||| |||||| gccCUAACUGUAAGACCAUCUGu 2 19 4 26 [mm9:19:34314567-34314589:+] 0.5364 125 6 -14.77 -0.2695 MIMAT0009426 mmu-miR-1955 76630 Stambpl1 uuuUCGACG-UCACGUAGGAC-CCUGa | |||: || ||| ||| |||| ccuAACUGUAAGACCAU-CUGUGGACg 2 23 6 31 [mm9:19:34314569-34314594:+] 0.5364 123 0 -17.96 -1.1517 MIMAT0009431 mmu-miR-1958 76630 Stambpl1 ugaaUGACGAAGGUGAAAGGAu || :|| | |||||| uugcACAUUUUGAAGUUUCCUu 2 19 124 145 [mm9:19:34314687-34314708:+] 0.6723 122 6 -8.88 -0.4870 MIMAT0011210 mmu-miR-2134 76630 Stambpl1 cguggggcaAAGGGUUCug | |||||| cuauuaauaUACCCAAGug 3 11 205 223 [mm9:19:34314768-34314786:+] 0.5829 122 0 -10.87 -0.1497 MIMAT0011214 mmu-miR-2138 76630 Stambpl1 uaaggcgguucgggCAAGGGAa |||:||| uugcacauuuugaaGUUUCCUu 2 9 124 145 [mm9:19:34314687-34314708:+] 0.6723 124 0 -13.99 -0.1503 MIMAT0000124 mmu-miR-15b 76630 Stambpl1 acaUUUGGUACUACACGACGau :|| :| |||||||| ucgGAAAUAAAUUGUGCUGCaa 3 20 230 251 [mm9:19:34314793-34314814:+] 0.5829 135 0 -13.56 -0.2249 MIMAT0000141 mmu-miR-130a 76630 Stambpl1 uacgGGAAAAUUGUAACGUGac ::| ||: : |||||| gauaUUUAUUGUUCUUGCACau 3 19 110 131 [mm9:19:34314673-34314694:+] 0.6723 130 0 -8.41 -0.2514 MIMAT0000142 mmu-miR-9 76630 Stambpl1 agUAUGUCGAUCUAUUGGUUUcu |||:| :| | :|||||| uuAUAUA-UUUUA-GACCAAAac 3 22 86 106 [mm9:19:34314649-34314669:+] 0.6723 129 0 -9.58 -0.3630 MIMAT0000145 mmu-miR-133a 76630 Stambpl1 gucgaccaacuucccCUGGUUu |||||| uauuuauauauuuuaGACCAAa 2 8 83 104 [mm9:19:34314646-34314667:+] 0.6723 120 6 -9.11 -0.7906 MIMAT0000225 mmu-miR-195 76630 Stambpl1 cggUUAUAAAGACACGACGau |||| | |||||||| ggaAAUAAAU-UGUGCUGCaa 3 19 232 251 [mm9:19:34314795-34314814:+] 0.5829 140 0 -14.55 -0.2189 MIMAT0000379 mmu-miR-301a 76630 Stambpl1 cgAAACUGU---U-AUGAUAACGUGac |||||:| | |::| |||||| acUUUGAUAUUUAUUGUUCUUGCACau 3 22 105 131 [mm9:19:34314668-34314694:+] 0.6723 139 0 -18.76 -0.2559 MIMAT0000387 mmu-miR-130b 76630 Stambpl1 uacgGGAAAGUAGUAACGUGac ::| |::|: |||||| gauaUUUAUUGUUCUUGCACau 3 19 110 131 [mm9:19:34314673-34314694:+] 0.6723 134 0 -8.41 -0.2559 MIMAT0000513 mmu-miR-19b 76630 Stambpl1 agucaaaacguaccuaAACGUGu |||||| uugauauuuauuguucUUGCACa 2 8 108 130 [mm9:19:34314671-34314693:+] 0.6723 120 6 -9.02 -0.7508 MIMAT0000526 mmu-miR-15a 76630 Stambpl1 gugUUUGGUAAUACACGACGau |||: | | |||||||| cggAAAUAAAU-UGUGCUGCaa 3 20 231 251 [mm9:19:34314794-34314814:+] 0.5829 141 0 -15.97 -0.2229 MIMAT0000527 mmu-miR-16 76630 Stambpl1 gcggUUAUAAAUGCACGACGau |||| | :||||||| cggaAAUAAAU-UGUGCUGCaa 3 19 231 251 [mm9:19:34314794-34314814:+] 0.5829 136 0 -16.44 -0.2189 MIMAT0000538 mmu-miR-31 76630 Stambpl1 guCGAUACGGUCGU-AGAACGga | ||| ::| :: |||||| uuGAUAU-UUAUUGUUCUUGCac 3 21 108 129 [mm9:19:34314671-34314692:+] 0.6723 125 0 -8.07 -0.4270 MIMAT0000546 mmu-miR-103 76630 Stambpl1 aguaucgggacaUGUUACGACGa |: :|||||| caucggaaauaaAUUGUGCUGCa 2 12 228 250 [mm9:19:34314791-34314813:+] 0.5829 127 6 -10.52 -0.4961 MIMAT0000548 mmu-miR-322 76630 Stambpl1 agGUUUUGUACUUA--ACGACGac |::|| || ||| |||||| auCGGAA-AUAAAUUGUGCUGCaa 3 21 229 251 [mm9:19:34314792-34314814:+] 0.5829 137 0 -15.69 -0.2209 MIMAT0004651 mmu-miR-340-5p 76630 Stambpl1 uuaguCAGAGUAACGAAAUAUu | || | | :|||||| gaaguGACUGA-UAUUUUAUAu 2 18 65 85 [mm9:19:34314628-34314648:+] 0.6723 131 6 -5.54 -0.4314 MIMAT0000647 mmu-miR-107 76630 Stambpl1 acuaucgggacaUGUUACGACGa |: :|||||| caucggaaauaaAUUGUGCUGCa 2 12 228 250 [mm9:19:34314791-34314813:+] 0.5829 127 6 -8.95 -0.4961 MIMAT0000651 mmu-miR-19a 76630 Stambpl1 agucaaaacguaucuaAACGUGu |||||| uugauauuuauuguucUUGCACa 2 8 108 130 [mm9:19:34314671-34314693:+] 0.6723 120 6 -9.02 -0.7508 MIMAT0000656 mmu-miR-139-5p 76630 Stambpl1 gaccucuGUGCACG--UGACAUcu ||:| | |||||| -------CAUGCCCUAACUGUAag 3 16 1 17 [mm9:19:34314564-34314580:+] 0.6125 122 0 -10.02 -0.1303 MIMAT0000671 mmu-miR-224 76630 Stambpl1 uugccuuGGUGAUCACUGAau :|| ||||||| gauguuuUCAGAAGUGACUga 3 15 55 75 [mm9:19:34314618-34314638:+] 0.6723 130 0 -14.15 -0.6800 MIMAT0000704 mmu-miR-361 76630 Stambpl1 cauggggaccucuaaGACUAUu |||||| uguuuucagaagugaCUGAUAu 2 8 57 78 [mm9:19:34314620-34314641:+] 0.6723 120 6 -9.36 -0.2174 MIMAT0000741 mmu-miR-377 76630 Stambpl1 uguuuuCAACGGAAACACACUa || | | ||||||| ccaucuGUGGAC-GUGUGUGAc 2 17 19 39 [mm9:19:34314582-34314602:+] 0.5364 142 7 -10.71 -0.2342 MIMAT0000766 mmu-miR-335-5p 76630 Stambpl1 uguAAAAAGCAAUAACGAGAACu || | ||||||:||||| acuUUGAUAUUUAUUGUUCUUGc 2 21 105 127 [mm9:19:34314668-34314690:+] 0.6723 152 0 -14.08 -0.1031 MIMAT0000769 mmu-miR-133b 76630 Stambpl1 aucgaccaacuucccCUGGUUu |||||| uauuuauauauuuuaGACCAAa 2 8 83 104 [mm9:19:34314646-34314667:+] 0.6723 120 6 -9.11 -0.7906 MIMAT0001091 mmu-miR-410 76630 Stambpl1 uguccgguagacacAAUAUAa |||||| aagugacugauauuUUAUAUu 2 8 66 86 [mm9:19:34314629-34314649:+] 0.6723 120 6 -5.19 -0.4421 MIMAT0004186 mmu-miR-301b 76630 Stambpl1 cgAAACUGU---U-AUGGUAACGUGac |||||:| | |::: |||||| acUUUGAUAUUUAUUGUUCUUGCACau 3 22 105 131 [mm9:19:34314668-34314694:+] 0.6723 135 0 -17.40 -0.2559 MIMAT0003453 mmu-miR-497 76630 Stambpl1 augUUUGGUGUCACACGACGac :|| :| | |||||||| ucgGAAAUAAAUUGUGCUGCaa 3 20 230 251 [mm9:19:34314793-34314814:+] 0.5829 143 0 -14.71 -0.2249 MIMAT0003515 mmu-miR-721 76630 Stambpl1 aagggggAAAAUUAACGUGac || | |||||| auauuuaUUGUUCUUGCACau 3 15 111 131 [mm9:19:34314674-34314694:+] 0.6723 126 0 -6.65 -0.2559

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G054177 Stambpl1 Mus musculus 76630

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Stambpl1 mmu-miR-450b-5p beg:240 end:253 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& .|.||||||| &5' -----------GTGCTGCAAA- 3' Stambpl1 mmu-miR-291a-5p beg:97 end:113 pic:3' TCTCTCCCGGAGGTGAAACTAC 5'& || |||||||| &5' --------CCAAAACTTTGAT- 3' Stambpl1 mcmv-miR-m107-1-5p beg:58 end:75 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& .|| ||| ||||||.| &5' -----TTC-AGA--AGTGACTG 3' Stambpl1 mcmv-miR-m108-2-5p.1 beg:22 end:43 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& ||| ||.|| |||||.|| &5' --GTGGACGTGT---GTGACTGC 3' Stambpl1 mcmv-miR-m108-2-5p.1 beg:52 end:75 pic:3' GCCACGAGCGCAGC-TCACTGGCG 5'& | ||.|. | | ||||||.| &5' -GATGTTTTCA--GAAGTGACTG- 3' Stambpl1 mmu-miR-139-5p beg:20 end:46 pic:3' GACCTCTGTGCACG-TGACATCT 5'& ||| |||..|||. |||| || &5' CTGTGGACGTGTGTGACTGCCGA 3' Stambpl1 mmu-miR-1970 beg:201 end:228 pic:3' GTTTCGGATAG------GGG-TCACTGTGT 5'& |||||. ||| |||||..| &5' -----CCTATTAATATACCCAAGTGATGC- 3' Stambpl1 mmu-miR-223 beg:62 end:78 pic:3' ACCCCATAAACTGT-TTGACTGT 5'& || .|||||.| &5' ----------GAAGTGACTGATA 3' Stambpl1 mmu-miR-485star beg:22 end:41 pic:3' CTCTCCTCTCGGCACATACTGA 5'& | ||| |||||.||||| &5' --GTGGA----CGTGTGTGACT 3' Stambpl1 mmu-miR-707 beg:22 end:42 pic:3' GCATCCGTTCGC-CGTACTGAC 5'& | . || |..|||||| &5' -----GTGGACGTGTGTGACTG 3' Stambpl1 mmu-miR-767 beg:177 end:194 pic:3' ACGAGTCTGTTGGTACCACGT 5'& ||.| |.|||||. &5' -----AGGCCA-CGTGGTGT- 3' Stambpl1 mmu-miR-770-5p beg:175 end:195 pic:3' GCACCGGGTCTGTGCACCACGA 5'& || |||| ||||||||.| &5' CGAGGCC-----ACGTGGTGTT 3' Stambpl1 mmu-miR-875-3p beg:46 end:66 pic:3' GTATCGGAGT-C-ATAAAAGTCC 5'& .||.| | |.||||||| &5' -----TCTTATGATGTTTTCAG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Stambpl1; Amshlp mmu-miR-152 215 250 -GGGUUCAAGACAGU------------ACGUGACU ||||||| || || ||::||| ACCCAAGUGAUGCCAUCGGAAAUAAAUUGUGCUGC Stambpl1; Amshlp mmu-miR-15b 220 251 ACAUU-UGGUA-CU--------ACACGACGAU ||:| :|||| |: |||||||| AGUGAUGCCAUCGGAAAUAAAUUGUGCUGCA- Stambpl1; Amshlp mmu-miR-16 224 251 -GCGGUUAUAAAU-----GCACGACGAU :|||| :||||||| AUGCCAUCGGAAAUAAAUUGUGCUGCA- Stambpl1; Amshlp mmu-miR-17-3p 2 17 AUGUUCACGGGAGUGACGUCA |||||| ||||:| -----AUGCCCUAACUGUAA- Stambpl1; Amshlp mmu-miR-187 160 189 GGCCGACGUUG-------UGUUCU-GUGCU ||:||| :| ||:||: |||| -GGGUUGCUGCGUCUCAAACGAGGCCACGU Stambpl1; Amshlp mmu-miR-195 225 251 -CGGUUAUAAA-----GACACGACGAU |||| :|||||||| UGCCAUCGGAAAUAAAUUGUGCUGCA- Stambpl1; Amshlp mmu-miR-212 26 43 -CCGGCACUGACCUCUGACAAU || |||| | ||||| UGGACGUGUGU---GACUGC-- Stambpl1; Amshlp mmu-miR-29c 177 196 UGGCUAAAGUUUACCACGAU ||| || :|||||:| -ACGAGGCCACGUGGUGUUC Stambpl1; Amshlp mmu-miR-301 105 131 CGAAACUGUU-AUGAUA---ACGUGAC ||||||:| ||:|:| ||||| ACUUUGAUAUUUAUUGUUCUUGCACA- Stambpl1; Amshlp mmu-miR-301b 105 131 ACGAAACUGU---UAUGGU-AACGUGAC ||||||:| || : |||||| -ACUUUGAUAUUUAUUGUUCUUGCACA- Stambpl1; Amshlp mmu-miR-34a 16 46 UUGUUGGUCGAUU--------CUGUGACGGU- :|||| ||: | ||||||: --AGACCAUCUGUGGACGUGUGUGACUGCCGA Stambpl1; Amshlp mmu-miR-431 10 33 GGACGUACUGCCGGACGUUCUGU- |||:| ||| :|||:: |||: ACUGUAAGACCAUCUGUG-GACGU Stambpl1; Amshlp mmu-miR-449 17 46 -UGGUCGAUUGUUAUG-----UGACGGU- |||| ||: :| ||||||: GACCAUCUGUGGACGUGUGUGACUGCCGA Stambpl1; Amshlp mmu-miR-450b 229 254 AUAAGUCCUUG------UAUGACGUUUU || |||| :|:||||||| --AUC-GGAAAUAAAUUGUGCUGCAAAU Stambpl1; Amshlp mmu-miR-464 169 194 AUAGAGUGU-CUUAUUUGAACCAU- :||||| ||: || ||||: CGUCUCAAACGAGGCCACGUGGUGU Stambpl1; Amshlp mmu-miR-485-3p 24 42 CUCUCCUCUCGGCACAUACUGA- | ||| |||||:||||| -UGUGGA----CGUGUGUGACUG Stambpl1; Amshlp mmu-miR-485-5p 170 202 CUUAAGUAGUG----CCGG-----------UCGGAGA || ||| |||| ||||| ---GUC-UCAAACGAGGCCACGUGGUGUUCAGCCUA- Stambpl1; Amshlp mmu-miR-505 14 41 UCUUUUGGU---CGUU--CACA-ACUGC ||:|||| |::: |||| |||| -UAAGACCAUCUGUGGACGUGUGUGACU Stambpl1; Amshlp mmu-miR-652 210 232 ACGUGU-UGGGAUCACCGCGGUAA |:| |||| |||| :||||| --AAUAUACCCAAGUGAUGCCAUC Stambpl1; Amshlp mmu-miR-672 183 208 GUGUGUGUCAUG---UGGU--UGGAGU |||:::||: :|| |||| -CCACGUGGUGUUCAGCCUAUACCUA- Stambpl1; Amshlp mmu-miR-680 215 230 GGGGGUACAGUCGUCUACGGG |||| ||: |||||| -ACCCA----AGU-GAUGCCA Stambpl1; Amshlp mmu-miR-681 160 185 -UCGACGGA-CGGUC---GCUCCGAC :|:|||: |:| |||||| GGGUUGCUGCGUCUCAAACGAGGCC- Stambpl1; Amshlp mmu-miR-682 26 44 GUCUGAAGUGACACUGACGUC :||| ||||||||| UGGACGUG--UGUGACUGCC- Stambpl1; Amshlp mmu-miR-695 192 222 -AAGUCA---GUGGAUAC------GGGUUAGA ||||| :|||||| ||||| GUUCAGCCUAUACCUAUUAAUAUACCCAAG-- Stambpl1; Amshlp mmu-miR-700 157 173 CCACCUGAGCCAAGGGCGCAC :| |||| |:|||| -----UUUGGGUUGCUGCGUC Stambpl1; Amshlp mmu-miR-760 4 52 GAGGGGUG-----UCUGGG-----UCU-----------CGGCUUAAAG |||:| ||||| :|| |||||||||| -GCCCUAACUGUAAGACCAUCUGUGGACGUGUGUGACUGCCGAAUUUCU Stambpl1; Amshlp mmu-miR-762 164 202 -CGAGACAGGG------CCGG---------GGUCGGGG ||| |||:| |||| :|||||: UGCUGCGUCUCAAACGAGGCCACGUGGUGUUCAGCCUA Stambpl1; Amshlp mmu-miR-770-3p 160 189 GGUCGA-GGUGCAG-------UCCGGGUGC- :|:| |::|||| ||| ||||| -GGGUUGCUGCGUCUCAAACGAGG-CCACGU Stambpl1; Amshlp mmu-miR-96 24 48 UCGUUUUUACACGAUCACGGUUU- |:::| :||||: ||||:|| UGUGGACGUGUGUGACUGCCGAAU Stambpl1; Amshlp mmu-miR-450b 246 253 AUA----------------AGUCCUUG------UAUGACGUUUU || |||| :|:||||||| AUAUACCCAAGUGAUGCCAUC-GGAAAUAAAUUGUGCUGCAAAU Stambpl1; Amshlp mmu-miR-760 43 50 GAG-----------GGGUGUCUGGGU---CU--CGGCUUAAAG :|:: ||| : || |||||||||| UAACUGUAAGACCAUCUGUGGACGUGUGUGACUGCCGAAUUUCU Stambpl1; Amshlp mmu-miR-132 16 44 gCUGGU----ACC-G-ACAU-CUGACaau ||||| ||| | |||: ||||| aGACCATCTGTGGACGTGTGTGACTGccg Stambpl1; Amshlp mmu-miR-152 216 249 GGGUUCAAGACAGU------------ACGUGACu ||||||| || || ||::||| CCCAAGTGATGCCATCGGAAATAAATTGTGCTGc Stambpl1; Amshlp mmu-miR-15b 220 251 aCAUU-UGGUA--CU-------ACACGACGau ||:| :|||| || |||||||| aGTGATGCCATCGGAAATAAATTGTGCTGCaa Stambpl1; Amshlp mmu-miR-16 231 251 GCGGUUAUAAAUGCACGACGau || |||| | :||||||| CGGAAATAAAT-TGTGCTGCaa Stambpl1; Amshlp mmu-miR-17-3p 1 17 auguucACGGGAGUGACGUca |||||| ||||:| ----caTGCCCTAACTGTAag Stambpl1; Amshlp mmu-miR-187 162 188 ggcCGACGUUG----UG-UUCUGUGCu |||||: | || |:| |||| gttGCTGCGTCTCAAACGAGGCCACGt Stambpl1; Amshlp mmu-miR-195 232 251 cggUUAUAAAGACACGACGau |||| | |||||||| ggaAATAAAT-TGTGCTGCaa Stambpl1; Amshlp mmu-miR-212 21 44 ccGGCA-CUG-AC-CUCUGACaau |:|| ||| || | ||||| atCTGTGGACGTGTGTGACTGccg Stambpl1; Amshlp mmu-miR-29c 176 195 UGGCUAAAGUUUACCACGAu | ||| || :|||||:| AACGAGGCCACGTGGTGTTc Stambpl1; Amshlp mmu-miR-301 105 131 cGAAACUGU---U-AUGAUAACGUGac ||||||:| | |::| |||||| aCTTTGATATTTATTGTTCTTGCACat Stambpl1; Amshlp mmu-miR-301b 104 131 acGAAACUGU---U-AUGGUAACGUGac ||||||:| | |::: |||||| aaCTTTGATATTTATTGTTCTTGCACat Stambpl1; Amshlp mmu-miR-34a 22 44 uuguuggucgauucugUGACGGu |||||| tctgtggacgtgtgtgACTGCCg Stambpl1; Amshlp mmu-miR-431 1 20 ggacGUACUGCCG---GACGUUCUGu |||| | | |||:||||| ----CATGCC--CTAACTGTAAGACc Stambpl1; Amshlp mmu-miR-449 18 44 UGGUCGA---UUGU-UAU-GUGACGGu |||| || :||: :|: |||||| ACCATCTGTGGACGTGTGTGACTGCCg Stambpl1; Amshlp mmu-miR-450b 227 253 auaAGUCCUUGU-----AUGACGUUUu ||:| ||:| |:||||||| ccaTCGGAAATAAATTGTGCTGCAAAt Stambpl1; Amshlp mmu-miR-485-3p 23 40 cuCUCCUCUCGGCACAUACUGA | ||| |||||:||||| ctGTGGA----CGTGTGTGACT Stambpl1; Amshlp mmu-miR-485-5p 179 202 CUUAAGUAGUGCC---GGUCGGAga ||: || |::|| :|||||| GAGGCCA-CGTGGTGTTCAGCCTat Stambpl1; Amshlp mmu-miR-505 13 31 ucUUUUGGUCGUUCACAACUGC ||:|||| | ||| |||| gtAAGACCATC---TGTGGACG Stambpl1; Amshlp mmu-miR-652 209 231 acguguUGGGAUCACCGCGGUAa |||| |||| :||||| taatatACCCAAGTGATGCCATc Stambpl1; Amshlp mmu-miR-672 182 202 guGUGUGUCAUGUGGUUGGAgu |||:::||:: :||:||| gcCACGTGGTGT-TCAGCCTat Stambpl1; Amshlp mmu-miR-680 214 229 ggGGGUACAGUCGUCUACGGg |||| || |||||| taCCCAAGT-----GATGCCa Stambpl1; Amshlp mmu-miR-681 164 185 uCGACGGACGG-UCGCUCCGac ||||| | :| | |||||| tGCTGCGTCTCAAACGAGGCca Stambpl1; Amshlp mmu-miR-682 26 44 guCUGAAGUGACACUGACGuc ||| | ||||||||| tgGACGT--GTGTGACTGCcg Stambpl1; Amshlp mmu-miR-695 193 223 AAGUCAG---UGG------AUACGGGUUaga ||||| | ||| ||| ||||| TTCAGCCTATACCTATTAATATACCCAAgtg Stambpl1; Amshlp mmu-miR-700 152 172 ccaccugAGCCAAGGGCGCAc | |||| |:|||| tttttttTGGGTTGCTGCGTc Stambpl1; Amshlp mmu-miR-760 17 50 gaGG--GGUGUCUGGGU---CU--CGGCUUAAAG || |::::||| :: || |||||||||| gaCCATCTGTGGACGTGTGTGACTGCCGAATTTC Stambpl1; Amshlp mmu-miR-762 165 201 CGAGACAGGG------CCGG---------GGUCGGgg ||| |||:| |||| :||||| GCTGCGTCTCAAACGAGGCCACGTGGTGTTCAGCCta Stambpl1; Amshlp mmu-miR-770-3p 168 187 gGUCGAG-GUGCAGUCCGGGUGC |: ||| ||| ||| ||||| gCGTCTCAAACG--AGG-CCACG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Stambpl1 RAID00095024 mmu-miR-224-5p miRNA MIMAT0000671 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID00099993 mmu-miR-322-5p miRNA MIMAT0000548 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID00235843 mmu-miR-130a-3p miRNA MIMAT0000141 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID00408843 mmu-miR-133b-3p miRNA MIMAT0000769 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID00454897 mmu-miR-466l-3p miRNA MIMAT0005830 Stambpl1 mRNA 76630 Prediction 0.2202 Stambpl1 RAID00715922 mmu-miR-410-3p miRNA MIMAT0001091 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID00911508 mmu-miR-139-5p miRNA MIMAT0000656 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID01142358 mmu-miR-497a-5p miRNA MIMAT0003453 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID01292732 mmu-miR-335-5p miRNA MIMAT0000766 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID01388191 mmu-miR-15b-5p miRNA MIMAT0000124 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID01801755 mmu-miR-6916-3p miRNA MIMAT0027733 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID01902116 mmu-miR-19b-3p miRNA MIMAT0000513 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID01943937 mmu-miR-130b-3p miRNA MIMAT0000387 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID01976102 mmu-miR-16-5p miRNA MIMAT0000527 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID02647143 mmu-miR-301b-3p miRNA MIMAT0004186 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID02683797 mmu-miR-361-5p miRNA MIMAT0000704 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID02826914 mmu-miR-9-5p miRNA MIMAT0000142 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID02916461 mmu-miR-19a-3p miRNA MIMAT0000651 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID03225390 mmu-miR-103-3p miRNA MIMAT0000546 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID03362696 mmu-miR-301a-3p miRNA MIMAT0000379 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID03516813 mmu-miR-340-5p miRNA MIMAT0004651 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID03621434 mmu-miR-133a-3p miRNA MIMAT0000145 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID03659752 mmu-miR-15a-5p miRNA MIMAT0000526 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID03716575 mmu-miR-107-3p miRNA MIMAT0000647 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID03891152 mmu-miR-377-3p miRNA MIMAT0000741 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID03948351 mmu-miR-195a-5p miRNA MIMAT0000225 Stambpl1 mRNA 76630 CLIP-seq//Prediction 0.6308 Stambpl1 RAID03953676 mmu-miR-31-5p miRNA MIMAT0000538 Stambpl1 mRNA 76630 Prediction 0.1828 Stambpl1 RAID04060562 mmu-miR-721 miRNA MIMAT0003515 Stambpl1 mRNA 76630 Prediction 0.1828