DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim8; Gerp; Rnf27 ATTTA 146-1801 1947-1951 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT594221 mmu-miR-693-3p Mus musculus Trim8 93679 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080 MIRT594222 mmu-miR-208a-5p Mus musculus Trim8 93679 Mus musculus HITS-CLIP Functional MTI (Weak) 23142080

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 93679 Trim8 auCUCGUCGUUUAUUAC-UAAGc |: : | :||| ||| |||| guGGCUCGGGAAUUAUGCAUUCa 2 21 46 68 [mm9:19:46590202-46590224:+] 0.5688 120 0 -9.56 -0.3914 MIMAT0000137 mmu-miR-126-5p 93679 Trim8 gcgcAUGGUUUUCAUUAUUAc || :|| | ||||||| auaaUAAUAAUAUUAAUAAUa 2 18 733 753 [mm9:19:46590889-46590909:+] 0.6274 157 7 -2.14 -1.3363 MIMAT0000137 mmu-miR-126-5p 93679 Trim8 gcgCAUGGUUUUCAUUAUUAc | | :||||| |||||| agaGAAAUAAAAGAAAUAAUg 2 19 758 778 [mm9:19:46590914-46590934:+] 0.6274 138 6 -11.68 -0.6701 MIMAT0004540 mmu-miR-186* 93679 Trim8 ggguuuUUUAAGUGGAAUCCCg | :||: :|||||| uggauuAUGUUUUAUUUAGGGu 2 17 133 154 [mm9:19:46590289-46590310:+] 0.5193 132 6 -10.75 -0.1146 MIMAT0000240 mmu-miR-207 93679 Trim8 cucccuccucucggUCCUCUUcg ||||||| aaaaaaaaaaaaaaAGGAGAAaa 3 10 665 687 [mm9:19:46590821-46590843:+] 0.6201 125 0 -8.78 -0.6268 MIMAT0000370 mmu-miR-292-3p 93679 Trim8 uguGAGUU--UUGGACCGCCGU-GAAa ||||| |:||| :|||| ||| cauCUCAAGCAGCCU-UUGGCAUCUUc 2 22 580 605 [mm9:19:46590736-46590761:+] 0.6201 126 0 -19.47 -0.5975 MIMAT0000377 mmu-miR-299* 93679 Trim8 uacauacacccugccAUUUGGu |||||| ucaauuuuuuuuuuuUAAACCa 2 8 512 533 [mm9:19:46590668-46590689:+] 0.5471 120 6 -6.54 -0.2776 MIMAT0004583 mmu-miR-130b* 93679 Trim8 ucaucacguugucccUUUCUCa |||||| aauauuaauaauaauAAAGAGa 2 8 741 762 [mm9:19:46590897-46590918:+] 0.6274 120 6 -7.48 -0.9069 MIMAT0000556 mmu-miR-324-3p 93679 Trim8 ucGUCGUGGA-CCCCGUCACc ::|: ||| |||||||| acUGGUUCCUCUGGGCAGUGu 2 19 431 451 [mm9:19:46590587-46590607:+] 0.5471 153 7 -20.88 -0.2529 MIMAT0000578 mmu-miR-337-3p 93679 Trim8 ucCGUAGUAUAUCCUCGACUu |::|| | | |||||| ccGUGUCCAAGAAAAGCUGAg 2 20 639 659 [mm9:19:46590795-46590815:+] 0.6201 123 6 -11.88 -0.1743 MIMAT0004668 mmu-miR-138* 93679 Trim8 gggACCACAACACUUCAUCGGc || | || ||||||||| aggUGACGGUGGGAAGUAGCCu 2 20 202 223 [mm9:19:46590358-46590379:+] 0.5904 163 7 -22.03 -0.2639 MIMAT0004704 mmu-miR-335-3p 93679 Trim8 ccaguccUCGUUAUUACUUUUu || ||||||||| | aaauaaaAGAAAUAAUGAAUAa 2 16 762 783 [mm9:19:46590918-46590939:+] 0.6274 135 0 -8.56 -0.4686 MIMAT0002111 mmu-miR-470 93679 Trim8 ugaGUGGUCACGGU-CAGGUUCUu || || ||: |||||||| agcCAGGAGCCCCGUGUCCAAGAa 2 21 628 651 [mm9:19:46590784-46590807:+] 0.6201 155 7 -26.28 -0.7169 MIMAT0002111 mmu-miR-470 93679 Trim8 ugaguggucacggucaGGUUCUu |||||| auuuuuuuuuuuuaaaCCAAGAg 2 8 515 537 [mm9:19:46590671-46590693:+] 0.5471 120 6 -13.39 -0.1390 MIMAT0004786 mmu-miR-540-5p 93679 Trim8 ugUCUCAGUCUCCCACUGGGAAc | :| |: ||| ||||||| caAUGGACGCUGGG-GACCCUUc 2 22 12 33 [mm9:19:46590168-46590189:+] 0.5718 151 7 -20.07 -0.4421 MIMAT0003732 mmu-miR-668 93679 Trim8 ccAUCACCCGGCUCGGCUCACUGu |:|||| || ||||||| acUGGUGG--AGAAAAGAGUGACc 2 23 456 477 [mm9:19:46590612-46590633:+] 0.5471 151 7 -20.30 -0.8689 MIMAT0003733 mmu-miR-665 93679 Trim8 ucccuggaGUCGGAGGACCa || :||||||| uaauuaugCA-UCUCCUGGa 2 13 178 196 [mm9:19:46590334-46590352:+] 0.5549 142 7 -16.62 -1.1357 MIMAT0014815 mmu-miR-3099* 93679 Trim8 guucccgaccuuccUUCGACc |||||| cccguguccaagaaAAGCUGa 2 8 638 658 [mm9:19:46590794-46590814:+] 0.6201 120 6 -7.93 -0.1311 MIMAT0003898 mmu-miR-760 93679 Trim8 agGGGUGUCUGGGU-CUCGGc |:: || | ||| ||||| auCUUUCAAAGCCAGGAGCCc 2 19 619 639 [mm9:19:46590775-46590795:+] 0.6201 122 0 -16.95 -0.2922 MIMAT0003464 mmu-miR-686 93679 Trim8 agaaguggcagacccUUCGUUa |||||| uagugaccacagcgaAAGCAAa 2 8 712 733 [mm9:19:46590868-46590889:+] 0.6238 120 6 -8.23 -0.1276 MIMAT0003465 mmu-miR-719 93679 Trim8 uuguaaaaagacaUCGGCUCUa |||:|||| cguguccaagaaaAGCUGAGAa 2 10 640 661 [mm9:19:46590796-46590817:+] 0.6201 129 0 -11.76 -0.1576 MIMAT0003471 mmu-miR-692 93679 Trim8 cucacuccgcgaGUUUCUCUa :||||||| uauuaauaauaaUAAAGAGAa 2 10 743 763 [mm9:19:46590899-46590919:+] 0.6274 141 7 -8.34 -1.3554 MIMAT0003471 mmu-miR-692 93679 Trim8 cucacuccgcgagUUUCUCUa ||:|||| aaaaaaaaaaaaaAAGGAGAa 2 9 665 685 [mm9:19:46590821-46590841:+] 0.6201 124 0 -6.94 -0.3384 MIMAT0004189 mmu-miR-693-3p 93679 Trim8 aaugUCGGUGUAGA----C-UUUCGACg |||| |:| | | ||||||| caggAGCCCCGUGUCCAAGAAAAGCUGa 2 20 631 658 [mm9:19:46590787-46590814:+] 0.6201 145 7 -16.53 -1.1676 MIMAT0003474 mmu-miR-694 93679 Trim8 gaaguccguugUAAAAGUc :|||||| ucuuuguuuuaGUUUUCAa 2 9 497 515 [mm9:19:46590653-46590671:+] 0.5471 124 6 -5.82 -0.3608 MIMAT0003508 mmu-miR-501-5p 93679 Trim8 aaagugggucccUGUUUCCUaa | |||||| aaaaaaaaaaaaAAAAAGGAga 3 11 663 684 [mm9:19:46590819-46590840:+] 0.6201 122 0 -5.51 -0.6921 MIMAT0003508 mmu-miR-501-5p 93679 Trim8 aaagugggucccUGUUUCCUaa | |||||| aggagaaaaaaaAAAAAGGAac 3 11 679 700 [mm9:19:46590835-46590856:+] 0.6201 122 0 -8.18 -0.1791 MIMAT0003514 mmu-miR-718 93679 Trim8 gcUGUGGGCCGGCCCG-CCUUc |||||| | ||| |||| ucACACCC-CCAUGGCUGGAAg 2 20 338 358 [mm9:19:46590494-46590514:+] 0.5630 121 0 -26.09 -0.1227 MIMAT0004888 mmu-miR-493 93679 Trim8 ggACCGUGUGUCAUCCU-GGAAGu ||| ||:| | :||| ||||| aaUGG-ACGCUG-GGGACCCUUCu 2 22 13 34 [mm9:19:46590169-46590190:+] 0.5718 125 0 -21.76 -0.1070 MIMAT0004890 mmu-miR-509-5p 93679 Trim8 uacuaacgguguaaGACCUCAu ||||||| ggcugcagguagccCUGGAGUu 2 9 238 259 [mm9:19:46590394-46590415:+] 0.5904 140 7 -17.38 -0.1748 MIMAT0004862 mmu-miR-877* 93679 Trim8 acCCUCCUCCCUCUUCUC-CUGu || ||| || ||||| ||| cuGGUGGA--GAAAAGAGUGACc 2 21 457 477 [mm9:19:46590613-46590633:+] 0.5471 125 0 -17.52 -0.9075 MIMAT0005831 mmu-miR-669k 93679 Trim8 aacguacGCACAU-AUACGUAu || | | ||||||| gguggcuCGGGAAUUAUGCAUu 2 15 45 66 [mm9:19:46590201-46590222:+] 0.5688 145 7 -11.47 -0.4145 MIMAT0005831 mmu-miR-669k 93679 Trim8 aacguacgcacauAUACGUAu ||||||| uuuuuuuuuuaauUAUGCAUc 2 9 169 189 [mm9:19:46590325-46590345:+] 0.5193 140 7 -5.41 -0.7625 MIMAT0005842 mmu-miR-669h-3p 93679 Trim8 acacguACACACAU--AUACGUAu | | | || ||||||| uuuuuuUUUUUUUAAUUAUGCAUc 2 17 166 189 [mm9:19:46590322-46590345:+] 0.5193 143 7 -5.41 -0.7552 MIMAT0005842 mmu-miR-669h-3p 93679 Trim8 acaCGUACACACAUAUACGUAu || | | | ||||||| gugGCUCGGGAAU-UAUGCAUu 2 20 46 66 [mm9:19:46590202-46590222:+] 0.5688 141 7 -10.52 -0.3906 MIMAT0005843 mmu-miR-1188 93679 Trim8 aggaccGGGUUGGAGUGUGGu |:: |:||||||| uaccccCUUCCCUUCACACCc 2 16 325 345 [mm9:19:46590481-46590501:+] 0.5630 147 7 -20.78 -0.2622 MIMAT0005851 mmu-miR-1193 93679 Trim8 cuAUCAUUUUGCCCACUGGAu |:| :||| | ||||||| ggUGGAGAAAAGAGUGACCUa 2 20 459 479 [mm9:19:46590615-46590635:+] 0.5471 163 7 -19.56 -0.9147 MIMAT0007873 mmu-miR-1896 93679 Trim8 gaggAGUGGGUGGUAGUCUCUc |:|: ||: ||||||| ggaaUUAUGCAU--UCAGAGAc 2 19 54 73 [mm9:19:46590210-46590229:+] 0.5688 147 7 -13.23 -0.1661 MIMAT0009404 mmu-miR-1940 93679 Trim8 uuGACGAGG-UGGAAGA-GUCAGGAGGUa || |||| :||||| || ||||||| cuCU-CUCCUUUCUUCUCCAUUCCUCCAc 2 26 91 118 [mm9:19:46590247-46590274:+] 0.3702 173 7 -30.39 -0.3953 MIMAT0009408 mmu-miR-1943 93679 Trim8 agguccACGGGU--CUAGGAGGGAa |||||: |||||||| acccacUGCCCGUUUCUCCUCCCUu 2 18 405 429 [mm9:19:46590561-46590585:+] 0.5471 152 7 -29.95 -0.3213 MIMAT0009423 mmu-miR-1952 93679 Trim8 gucuuccucCCACCUCu ||||||| gugaucacuGGUGGAGa 2 9 450 466 [mm9:19:46590606-46590622:+] 0.5471 140 7 -14.89 -1.1155 MIMAT0009431 mmu-miR-1958 93679 Trim8 ugaaUGACGAAGGUGAAAGGAu |||| :| ||||||| aggcACUGGGCUCUCUUUCCUu 2 19 279 300 [mm9:19:46590435-46590456:+] 0.5630 154 7 -15.89 -0.9213 MIMAT0009461 mmu-miR-1982.2 93679 Trim8 gacacccucuUGUAUCCCAcu |: |||||| auuauguuuuAUUUAGGGUcu 3 12 136 156 [mm9:19:46590292-46590312:+] 0.5193 123 0 -7.50 -0.1223 MIMAT0011210 mmu-miR-2134 93679 Trim8 cguggggcaaagGGUUCUg |||||| uuuuuuuuuaaaCCAAGAg 2 8 519 537 [mm9:19:46590675-46590693:+] 0.5471 120 6 -8.44 -0.1404 MIMAT0011222 mmu-miR-2146 93679 Trim8 guguaccuuGGGAAGAGGUg ::|||||||| cucucuccuUUCUUCUCCAu 2 12 91 110 [mm9:19:46590247-46590266:+] 0.3702 147 7 -15.49 -0.2344 MIMAT0012774 mmu-miR-664 93679 Trim8 auccgacccCUCAUUUACUUAu || ||||||| gaaauaaaaGAAAUAAUGAAUa 2 14 761 782 [mm9:19:46590917-46590938:+] 0.6274 141 7 -7.29 -1.3538 MIMAT0015641 mmu-miR-3470b 93679 Trim8 ggucggaccagaugUCUCACu |||||| uuuuuuuuaaaccaAGAGUGa 2 8 520 540 [mm9:19:46590676-46590696:+] 0.5471 120 6 -12.06 -0.1119 MIMAT0015645 mmu-miR-3473 93679 Trim8 ccgacucGGUAGAGAGGu :| ||||||| uccacccUCCUCUCUCCu 2 12 82 99 [mm9:19:46590238-46590255:+] 0.4364 143 7 -14.98 -0.1951 MIMAT0000148 mmu-miR-136 93679 Trim8 gguaguagUUUUGUUUACCUCa |||| ||| |||| aaaaaaaaAAAAAAAAAGGAGa 2 15 663 684 [mm9:19:46590819-46590840:+] 0.6201 130 0 -6.90 -0.3163 MIMAT0000211 mmu-miR-182 93679 Trim8 gccacacucaagaUGGUAACGGUUu | | ||||||| aaaaaaaaaaaggAACUUUGCCAAu 2 13 685 709 [mm9:19:46590841-46590865:+] 0.6201 144 7 -10.29 -1.0825 MIMAT0000214 mmu-miR-185 93679 Trim8 aguccuugacGGA-AAGAGAGGu ||| ||||||| cccuuuccacCCUCCUCUCUCCu 2 13 77 99 [mm9:19:46590233-46590255:+] 0.4364 143 7 -15.33 -0.1897 MIMAT0000214 mmu-miR-185 93679 Trim8 aguccuuGACGGAAAG-AGAGGu || |||||| ||||| cuccucuCU-CCUUUCUUCUCCa 2 16 88 109 [mm9:19:46590244-46590265:+] 0.4364 125 0 -20.14 -0.7642 MIMAT0000236 mmu-miR-203 93679 Trim8 gaUCACCAGGAUUUGUA-AAGUg || | |:| ::||| |||| caAGCAGCCUUUGGCAUCUUCAa 2 21 585 607 [mm9:19:46590741-46590763:+] 0.6201 120 0 -10.17 -0.4704 MIMAT0000237 mmu-miR-204 93679 Trim8 uccgUAUCCUACUGUUUCCCUu ||| || |:|||| || auuaAUA--AUAAUAAAGAGAa 2 19 744 763 [mm9:19:46590900-46590919:+] 0.6274 123 0 -5.90 -0.2918 MIMAT0000531 mmu-miR-22 93679 Trim8 ugucaaGAAGUUGACCGUCGAa | | :| |||||||| agaagcCCUGGA-UGGCAGCUc 2 17 357 377 [mm9:19:46590513-46590533:+] 0.5550 146 7 -15.70 -0.1447 MIMAT0000668 mmu-miR-211 93679 Trim8 uccguUUCCUACUGUUUCCCUu || || |:|||| || auauuAAUAAUAAUAAAGAGAa 2 18 742 763 [mm9:19:46590898-46590919:+] 0.6274 125 0 -5.90 -0.2893 MIMAT0003182 mmu-miR-494 93679 Trim8 cuccAAAGGGCACAUACAAAGu |||:: | |||||||: ucuuUUUUUGGAUUAUGUUUUa 2 19 125 146 [mm9:19:46590281-46590302:+] 0.5193 142 0 -12.10 -0.1756 MIMAT0003729 mmu-miR-216b 93679 Trim8 agUGUAAACGGACGUCUCUAAa | | | ||| ||||||| aaAGAGUGACCU--AGAGAUUg 2 21 467 486 [mm9:19:46590623-46590642:+] 0.5471 145 7 -10.98 -0.3445 MIMAT0003783 mmu-miR-615-3p 93679 Trim8 uucucccUCUGGGU--CCGAGCCu || |||: ||||||| ucuccccAGCCCCGGUGGCUCGGg 2 16 32 55 [mm9:19:46590188-46590211:+] 0.5688 150 7 -23.99 -0.2368 MIMAT0004847 mmu-miR-882 93679 Trim8 ugauuacgcgauuGAGAGAGGa |||||||| ccuuuccacccucCUCUCUCCu 2 10 78 99 [mm9:19:46590234-46590255:+] 0.4364 145 7 -17.00 -0.1897 MIMAT0004889 mmu-miR-504 93679 Trim8 cuAUCUCACGUCUGGUCCCAGa || : | :| ::|||||| auUAUGUUUUA-UUUAGGGUCu 2 21 136 156 [mm9:19:46590292-46590312:+] 0.5193 126 6 -15.17 -0.1460 MIMAT0004896 mmu-miR-590-3p 93679 Trim8 ugaUCGAAUAU--GUAUUUUAAu ||| ||| |||| ||| gaaAGCAAAUAAUAAUAAUAUUa 2 19 725 747 [mm9:19:46590881-46590903:+] 0.6274 121 0 -6.31 -0.3245

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040042 Trim8 Mus musculus 93679 19536157 0 0 R48802; MOUSE$TRIM8_01; Binding factors: mmu-miR-106a-5p , mmu-miR-17-5p , mmu-miR-20b-5p , mmu-miR-93-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim8 mmu-miR-216b beg:470 end:486 pic:3' AGTGTAAAC-GGACGTCTCTAAA 5'& || ||| ||||||| &5' -------TGACCT--AGAGATT- 3' Trim8 mmu-miR-673-3p beg:233 end:257 pic:3' CCACG-TGTCTTGAGTCGGGGCCT 5'& || || .|||. .|||||.||| &5' GGGGCTGCAGG---TAGCCCTGGA 3' Trim8 mmu-miR-673-3p beg:348 end:369 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& || ..||| |||||.||| &5' ---GC-TGGAAGA-AGCCCTGGA 3' Trim8 mmu-miR-138star beg:206 end:223 pic:3' GGGACCACAACACTTCATCGGC 5'& |||| ||||||||| &5' ----GGTGG---GAAGTAGCC- 3' Trim8 mcmv-miR-m107-1-5p beg:707 end:720 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& ||. ||||||| &5' ----------GAT-AGTGACC- 3' Trim8 mmu-miR-34b-5p beg:398 end:415 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& |||| ||||||| &5' -----CAGCACC---CACTGCC- 3' Trim8 mghv-miR-M1-1 beg:114 end:128 pic:3' TTTCCTTCATGCCGGTAAAGAT 5'& || |.||||||| &5' ---------AC-GTCATTTCT- 3' Trim8 mmu-miR-762 beg:25 end:45 pic:3' CGAGACAGGGCC--GGGGTCGGGG 5'& ||| |||||||||| &5' -------CCCTTCTCCCCAGCCCC 3' Trim8 mmu-miR-673-3p beg:35 end:47 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||||||||| &5' -------------CAGCCCCGG- 3' Trim8 mmu-miR-615-3p beg:37 end:55 pic:3' TTCTCCCTCTGGGT---CCGAGCCT 5'& .||| |||||||. &5' ---------GCCCCGGTGGCTCGGG 3' Trim8 mmu-miR-1952 beg:449 end:467 pic:3' GTCTTCCTCCCACCTCT 5'& || |||||||| &5' --GATCACTGGTGGAGA 3' Trim8 mcmv-miR-m01-1 beg:411 end:426 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |||| |||||||| &5' CCGT---------TTCTCCTC- 3' Trim8 mcmv-miR-m01-1 beg:75 end:102 pic:3' GGCAAGCTGCAATA--AGAGGAGA 5'& || ||| || ||||||.| &5' CCTTTCCACCCTCCTCTCTCCTTT 3' Trim8 mcmv-miR-m107-1-5p beg:456 end:478 pic:3' CCACTGAGCTCTG--CTCACTGGC 5'& |||| |||| |||||||| &5' GGTG----GAGAAAAGAGTGACC- 3' Trim8 mcmv-miR-M23-2 beg:99 end:118 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||| || ||.||| &5' ---CTTCTCCATT-CCTCCA- 3' Trim8 mghv-miR-M1-9 beg:437 end:454 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& || ||| |.||||| &5' -------TCTGGGC-AGTGTGA 3' Trim8 mmu-miR-105 beg:271 end:293 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& ||. |.||| |||.|| || &5' ACTCAAGGCA-CTGGGCTCT--- 3' Trim8 mmu-miR-1188 beg:324 end:345 pic:3' AGGACCGGGTTGG-AGTGTGGT 5'& || ||. || ||||||| &5' -CCC--CCTTCCCTTCACACC- 3' Trim8 mmu-miR-1191 beg:233 end:255 pic:3' ATCCCGATGTATCATTCTGAC 5'& .|||||.|| .|||. ||| &5' -GGGGCTGCA-GGTAGCCCTG 3' Trim8 mmu-miR-1193 beg:456 end:480 pic:3' CTATCATTTTG---CCCACTGGAT 5'& |.||..|. | |||||||| &5' --TGGTGGAGAAAAGAGTGACCTA 3' Trim8 mmu-miR-1224 beg:79 end:103 pic:3' GAGGT-GGAGGGGTCAGGAGTG 5'& |||| |||||.| ||||. | &5' -TCCACCCTCCTCTCTCCTTTC 3' Trim8 mmu-miR-143 beg:565 end:587 pic:3' CTCGATGTCACGAAGTAGAGT 5'& ||.| || || ||||||| &5' -AGTT-CAAGGCCACATCTCA 3' Trim8 mmu-miR-146a beg:494 end:515 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& .|. || ||.||||.||| &5' --TCTTTGT--TTTAGTTTTCA 3' Trim8 mmu-miR-146b beg:494 end:515 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& .|| || ||.||||.||| &5' --TCTTTGT--TTTAGTTTTCA 3' Trim8 mmu-miR-185 beg:276 end:299 pic:3' AGTCCTTGA-CGGAAAGAGAGGT 5'& ||| ||| | || |||.||| &5' --AGGCACTGGGCTCTCTTTCC- 3' Trim8 mmu-miR-1894-3p beg:74 end:97 pic:3' GAGGGAA--GTGGGA-GAGGGAACG 5'& ||||| |||||| |||.|| &5' --CCCTTTCCACCCTCCTCTCT--- 3' Trim8 mmu-miR-1897-5p beg:92 end:113 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& |.||.| ||||||||.| &5' CTCCTTTCTTCTCCATTC---- 3' Trim8 mmu-miR-1898 beg:214 end:229 pic:3' CTAGGGGACACTTGGAACTGGA 5'& || |.|||||.|| &5' --------GT-AGCCTTGGCC- 3' Trim8 mmu-miR-18a beg:588 end:605 pic:3' GATAGACGTGATCTACGTGGAAT 5'& || || |||.||| &5' ------GC-CTTTG-GCATCTT- 3' Trim8 mmu-miR-18b beg:584 end:605 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& |.|||| || |||.||| &5' --AGCAGC-CTTTG-GCATCTT- 3' Trim8 mmu-miR-1902 beg:583 end:605 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||| || |||| |||.||. &5' AAG-CA-GCCTTTGGCATCTT- 3' Trim8 mmu-miR-1929 beg:348 end:369 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||| | .||| |||.|| &5' ----GCTGGAAGAAGCCCTGGA- 3' Trim8 mmu-miR-1930 beg:475 end:493 pic:3' TGCGACGTCCATGATACCTCCA 5'& .|| |.|.|||||| &5' ------TAGAGATTGTGGAGG- 3' Trim8 mmu-miR-1937c beg:378 end:394 pic:3' ACCCCCGAGAA-GGCCCTA 5'& |||| |.|||| &5' -----GCTCGCCCTGGGA- 3' Trim8 mmu-miR-1940 beg:76 end:111 pic:3' TTGACGAGGTGGA---AGAGTC-----AGGAGGTA 5'& || .|||||| |||| |.|||||| &5' --CT-TTCCACCCTCCTCTCTCCTTTCTTCTCCAT 3' Trim8 mmu-miR-1940 beg:90 end:118 pic:3' TTGACGAGGT-GGAAGAGTC-AGGAGGTA 5'& || |||| .|||||| ||||||| &5' --CT-CTCCTTTCTTCTCCATTCCTCCA- 3' Trim8 mmu-miR-1943 beg:408 end:430 pic:3' AGGTCCACGGGTCT--AGGAGGGAA 5'& |||||. ||||||||| &5' ------TGCCCGTTTCTCCTCCCTT 3' Trim8 mmu-miR-1953 beg:278 end:300 pic:3' GTCTTCG-GACTCTT--GAAAGGGT 5'& |.|| |||.| ||||||. &5' ---AGGCACTGGGCTCTCTTTCCT- 3' Trim8 mmu-miR-1955 beg:232 end:256 pic:3' TTTTCGACGTCACGTA-GGACCCTGA 5'& |...||||||| |.| ||||| &5' AGGGGCTGCAG-GTAGCCCTGG---- 3' Trim8 mmu-miR-1956 beg:348 end:370 pic:3' AGGCGACTGAG-TCGGGACCTGA 5'& ||||. |||||||||. &5' ---GCTGGAAGAAGCCCTGGAT- 3' Trim8 mmu-miR-1956 beg:425 end:447 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& |.| ||| || |.||||.| &5' TTCACTGGTTC--CTCTGGGC- 3' Trim8 mmu-miR-1958 beg:280 end:300 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& ||| || ||. ||||||| &5' ACTGG--GC-TCT-CTTTCCT- 3' Trim8 mmu-miR-1960 beg:266 end:288 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& .||. || .||||||| &5' ---TCTTAACTCAAGGCACTGG 3' Trim8 mmu-miR-1971 beg:579 end:598 pic:3' AGAGTCGGGTCGGAAATG 5'& ||||| ||||||||. &5' TCTCAAG-CAGCCTTTG- 3' Trim8 mmu-miR-1981 beg:575 end:598 pic:3' CGGTGCAGA-TTCGGGTCGGAAATG 5'& ||||| ||| |||| |||||||. &5' GCCACATCTCAAGC--AGCCTTTG- 3' Trim8 mmu-miR-199a-5p beg:273 end:289 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& || ..||||||| &5' ----------TCAAGGCACTGGG 3' Trim8 mmu-miR-199bstar beg:273 end:289 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& || |..||||||| &5' ----------TCAAGGCACTGGG 3' Trim8 mmu-miR-205 beg:471 end:494 pic:3' GTCTGAGGCCACCT-TACTTCCT 5'& ||| | | | .||.|||. &5' --GAC-CTAGAGATTGTGGAGGG 3' Trim8 mmu-miR-208a beg:488 end:508 pic:3' TGTTCGAAAAACGAGCAGAATA 5'& .|| |||| .|.||.||| &5' --GAGGGTTTTCTTTGTTTTA- 3' Trim8 mmu-miR-20bstar beg:236 end:246 pic:3' GATCTTCACGAGTGTGACGTCA 5'& .|||||| &5' --------------GCTGCAG- 3' Trim8 mmu-miR-2134 beg:633 end:651 pic:3' CGTGGGGCAAAGGGTTCTG 5'& .|||||| .|||||| &5' --GCCCCGTG-TCCAAGA- 3' Trim8 mmu-miR-2146 beg:16 end:39 pic:3' GTGTACCTTGGGAAGAGGTG 5'& |.| ||.|||||||||| | &5' CGCTGGGGACCCTTCTCCCC 3' Trim8 mmu-miR-2146 beg:546 end:562 pic:3' GTGTACCTTGGGA-AGAGGTG 5'& .||||| |.||.| &5' -------GACCCTCTTTCTA- 3' Trim8 mmu-miR-23a beg:434 end:455 pic:3' CCTTTAGG-GA-CCGTTACACTA 5'& ||| || ||||.|||||| &5' -----TCCTCTGGGCAGTGTGAT 3' Trim8 mmu-miR-23b beg:434 end:455 pic:3' CCATTAGG-GA-CCGTTACACTA 5'& ||| || ||||.|||||| &5' -----TCCTCTGGGCAGTGTGAT 3' Trim8 mmu-miR-24 beg:273 end:291 pic:3' GACAAGGA-CGACTTGACTCGGT 5'& || || ||||.||. &5' ----TCAAGGC---ACTGGGCT- 3' Trim8 mmu-miR-27bstar beg:273 end:293 pic:3' CAAGTG-GTTA-GTCGATTCGAGA 5'& || ||| || ||..||||| &5' ----ACTCAAGGCA-CTGGGCTCT 3' Trim8 mmu-miR-291a-5p beg:147 end:166 pic:3' TCTCTCCCGGAGGTGAAACTAC 5'& ||||.| . .|||||| &5' ----AGGGTC-TTGTTTTGAT- 3' Trim8 mmu-miR-296-3p beg:21 end:45 pic:3' CCTCTCGGAGGT-GGGTTGGGAG 5'& ||.|| |||.| ||||.||| | &5' GGGGACCCTTCTCCCCAGCCC-C 3' Trim8 mmu-miR-30astar beg:337 end:359 pic:3' CGACGTTTGTAGG----CTGACTTTC 5'& ||| || |.|||.||| &5' -------ACACCCCCATGGCTGGAAG 3' Trim8 mmu-miR-3473 beg:87 end:99 pic:3' CCGACTCGGTAGAGAGGT 5'& || ||||||| &5' -------CC-TCTCTCC- 3' Trim8 mmu-miR-3473 beg:277 end:299 pic:3' CCG--ACTCGGTAGAGAGGT 5'& ||| ||.||. |||.||| &5' GGCACTGGGCTCTCTTTCC- 3' Trim8 mmu-miR-34a beg:392 end:415 pic:3' TGTT-GGTCGATTCTGTGACGGT 5'& .||. ||||| ||||||| &5' GCAGCCCAGCACC--CACTGCC- 3' Trim8 mmu-miR-34c beg:393 end:415 pic:3' CGTTA-GTCGATTGATGTGACGGA 5'& |||. |||| || ||||||| &5' GCAGCCCAGC--ACC-CACTGCC- 3' Trim8 mmu-miR-423-5p beg:412 end:431 pic:3' TTTCAGAGC-GAGAGACGGGGAGT 5'& || .|||| |||.||| &5' -------CGTTTCTCCTCCCTTCA 3' Trim8 mmu-miR-432 beg:633 end:651 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& |||| || ||||||| &5' --GCCCCGTG------TCCAAGA 3' Trim8 mmu-miR-449a beg:393 end:415 pic:3' TGGTCGA-TTGTTATGTGACGGT 5'& |||| |.|| ||||||| &5' --CAGCCCAGCACC-CACTGCC- 3' Trim8 mmu-miR-449b beg:393 end:415 pic:3' CGGTCGA-TTGTT-GTGACGGA 5'& | |||| |.|| ||||||| &5' GGCAGCCCAGCACCCACTGCC- 3' Trim8 mmu-miR-449c beg:393 end:415 pic:3' GGTCGA-TCGTTACGTGACGGA 5'& |||| |||| ||||||| &5' -CAGCCCAGCACC-CACTGCC- 3' Trim8 mmu-miR-450a-3p beg:588 end:608 pic:3' TACTTACGTT--TCGTAGGGGTTA 5'& || .|||||..||| &5' ------GCCTTTGGCATCTTCAA- 3' Trim8 mmu-miR-453 beg:382 end:401 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& || | ||. ||||||.|| &5' -----GC-C-CTGGGAGGCAGCC- 3' Trim8 mmu-miR-469 beg:381 end:398 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& |.|| ..|||||| &5' ---CGCCCT---------GGGAGGCA 3' Trim8 mmu-miR-470 beg:626 end:652 pic:3' TGAGTGGTCA-CGGT---CAGGTTCTT 5'& .|||| ||| ||||||||| &5' ----GCCAGGAGCCCCGTGTCCAAGAA 3' Trim8 mmu-miR-483 beg:286 end:309 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& |||.||| |||.||. |. &5' CTCTCTTTCCTTTTCTTTTT-- 3' Trim8 mmu-miR-485 beg:577 end:597 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& |||| | ||||||.| &5' -----CATCTCAAGCAGCCTTT 3' Trim8 mmu-miR-488 beg:607 end:628 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||||| . | ||||||| &5' --CCAAGT-GGAATCTTTCAA 3' Trim8 mmu-miR-504 beg:137 end:157 pic:3' CTATCTCACGTCT--GGTCCCAGA 5'& ||. ..||||||| &5' -------TGTTTTATTTAGGGTCT 3' Trim8 mmu-miR-539 beg:401 end:424 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& .||| ||| .||||||| &5' GCAC-CCACTGCCCGTTTCTCC 3' Trim8 mmu-miR-666-5p beg:395 end:419 pic:3' CCGAGAGTGTCGAC-ACGGGCGA 5'& || | .|| | ||||||.| &5' -GC-CCAGCACCCACTGCCCGTT 3' Trim8 mmu-miR-668 beg:456 end:477 pic:3' CCATCACCCGGCTCGG--CTCACTGT 5'& ||. ||| ||||||| &5' -------GGTGGAGAAAAGAGTGAC- 3' Trim8 mmu-miR-671-5p beg:70 end:93 pic:3' GAGGTCGGG-GAGGTCCCGAAGGA 5'& ||.|||| .|||| | |||| &5' --CCGGCCCTTTCCAC--CCTCCT 3' Trim8 mmu-miR-673-3p beg:378 end:393 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& .||| ||||.||. &5' ----------GCTC-GCCCTGGG 3' Trim8 mmu-miR-686 beg:205 end:220 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& || |||||||.|. &5' -------CGG-TGGGAAGTAG- 3' Trim8 mmu-miR-686 beg:374 end:399 pic:3' AGAAGTG-GCA-GACCCTTCGTTA 5'& |||| | || ||||||.|||. &5' TCTTTGCTCGCCCTGGGAGGCAG- 3' Trim8 mmu-miR-690 beg:207 end:225 pic:3' AAACCAACACTCGG-ATCGGAAA 5'& |||.| ||||||| &5' -------GTGGGAAGTAGCCTT- 3' Trim8 mmu-miR-693-3p beg:636 end:658 pic:3' AATGTCGGTGTAGA--C-TTTCGACG 5'& ||. || | ||||||| &5' ------CCGTGTCCAAGAAAAGCTG- 3' Trim8 mmu-miR-703 beg:486 end:498 pic:3' AAGAAAGGAAGACTTCCAAAA 5'& ||.|||||| &5' ------------GAGGGTTTT 3' Trim8 mmu-miR-872 beg:202 end:225 pic:3' GGACT-TGATTGTTCATTGGAA 5'& ||| . |.. |||||.|||| &5' --TGACGGTGGGAAGTAGCCTT 3' Trim8 mmu-miR-877 beg:423 end:444 pic:3' GGGACGCGGTAGAGGAGATG 5'& |||| | |. .||||||. &5' CCCTTCACTGGTTCCTCTG- 3' Trim8 mmu-miR-882 beg:282 end:300 pic:3' TGATTACGCGATTGAGAGAGGA 5'& || ||| ||||.|||| &5' -----TGGGCT--CTCTTTCCT 3' Trim8 mmu-miR-882 beg:88 end:100 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||||||||| &5' -------------CTCTCTCCT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Trim8; Gerp; Rnf27 mmu-miR-103 216 245 AGUAUCGGGACA------UGUUA-CGACGA :|||||:|| :||: ||||| -AGUAGCCUUGGCCCUUGGCAGGGGCUGCA Trim8; Gerp; Rnf27 mmu-miR-106a 273 298 AUGGA---CGUGACAAUCGU--GAAAC ||: |||||| :|| |||| AACUCAAGGCACUG--GGCUCUCUUUC Trim8; Gerp; Rnf27 mmu-miR-107 216 245 ACUAUCGGGACA------UGUUA-CGACGA :|||||:|| :||: ||||| -AGUAGCCUUGGCCCUUGGCAGGGGCUGCA Trim8; Gerp; Rnf27 mmu-miR-10b 225 248 -UGUGUUUAAGCCAAGAUGUCCC :| | : || ||:|||| GGCCCUUGGCAGGGGCUGCAGGU Trim8; Gerp; Rnf27 mmu-miR-122a 66 93 UGUUUGUGGUAACA----GUGUGAGGU ||:| |||: ||| |||| UCAGAGACCGGCCCUUUCCACCCUCCU Trim8; Gerp; Rnf27 mmu-miR-125b 251 290 AGUGUUCAAUCCC-----AGAGU------------CCCU | :||||:|| |||:| ||| CCUGGAGUUGGGACAGUAUCUUAACUCAAGGCACUGGGC Trim8; Gerp; Rnf27 mmu-miR-127 1 26 -CGGUUCGA--GUCUGCCUA-GGCU- ||||||| || |:||| |:|: CGCCAAGCAGGCA-AUGGACGCUGGG Trim8; Gerp; Rnf27 mmu-miR-129-3p 219 243 UACGAAAAACC-----CCAUUCCCGAA || |||| || |:||||| -AGCC--UUGGCCCUUGGCAGGGGCUG Trim8; Gerp; Rnf27 mmu-miR-133a 6 31 -UGUCG---ACCAACUUCCCCUGGUU :||| ||| | ||||||| AGCAGGCAAUGGACGCUGGGGACCC- Trim8; Gerp; Rnf27 mmu-miR-133b 5 31 AUCGACCA--ACUU----CCCCUGGUU ||| || ||:| ||||||| AAGCAGGCAAUGGACGCUGGGGACCC- Trim8; Gerp; Rnf27 mmu-miR-136 598 620 AGGUAGUAGUUUU-GUUUACCUCA |||| ||||| |||:|||| -GCAUCUUCAAACCCAAGUGGAA- Trim8; Gerp; Rnf27 mmu-miR-150 429 468 -GUGACCAUGUU--CCCA--AC-----------CCUCU- ||||||| ||| || ||||| UCACUGGUUCCUCUGGGCAGUGUGAUCACUGGUGGAGAA Trim8; Gerp; Rnf27 mmu-miR-17-3p 219 247 AUGUUCACGGGAG-------UGACGUCA :| |||||: :|||||| AGCCUUGGCCCUUGGCAGGGGCUGCAGG Trim8; Gerp; Rnf27 mmu-miR-181a* 6 26 CCAUGUUAGUUGCCAGCUACCA :|| |||:|| || ||| --AGCAGGCAAUGGACGCUGGG Trim8; Gerp; Rnf27 mmu-miR-185 408 425 CUUGACGGAAAGAGAGGU |||||| |:||||| -CACUGCCCGUUUCUCCU Trim8; Gerp; Rnf27 mmu-miR-188 220 244 UGGGAGGUGGUA--CGUUCCCUAC- |||: :|| |||:||| || -GCCUUGGCCCUUGGCAGGGGCUGC Trim8; Gerp; Rnf27 mmu-miR-199a 5 27 CUUGUCCAUCAGACUUGUGACCC- |:|||| ||:||:||||| AAGCAGGCAA--UGGACGCUGGGG Trim8; Gerp; Rnf27 mmu-miR-199b 5 27 CUUGUCCAUCAGAUUUGUGACCC- |:|||| |::||:||||| AAGCAGGCAA--UGGACGCUGGGG Trim8; Gerp; Rnf27 mmu-miR-200a 430 453 -UGUAGCAAU--GGUCUGUCACAAU || | ||| |::|:|||||| CAC-UGGUUCCUCUGGGCAGUGUG- Trim8; Gerp; Rnf27 mmu-miR-200c 425 453 -GGUAGUAAU---GGG---CCGUCAUAAU || ||| ||: ||||||:| CCCUUCACUGGUUCCUCUGGGCAGUGUG- Trim8; Gerp; Rnf27 mmu-miR-207 193 220 CUCC--CUCCUCU-CGGUC-CUCUUCG- || ||||||: | |:| |:||||: -UGGAUGAGGAGGUGACGGUGGGAAGUA Trim8; Gerp; Rnf27 mmu-miR-217 423 452 UAGGUCAG---UCAAGGACUA-CGUCAU- ||| || :|||||| |||||: CUCCCUUCACUGGUUCCUCUGGGCAGUGU Trim8; Gerp; Rnf27 mmu-miR-22 370 401 -UGUCAAGAAG---------UUGACCGUCGAA :||| ||||: :: |||||| GGCAGCUCUUUGCUCGCCCUGGGAGGCAGCC- Trim8; Gerp; Rnf27 mmu-miR-221 1 24 UUUGGGUCGUCUGUUACAU-CGA- :|| |||||:||||| ||| -CGCCAAGCAGGCAAUGGACGCUG Trim8; Gerp; Rnf27 mmu-miR-224 689 720 AUUUG--CCU-----UGGUG---AUCACUGAAU ||| ||| :||| ||||||| AAAAAAAGGAACUUUGCCAAUGAUAGUGACC-- Trim8; Gerp; Rnf27 mmu-miR-23a 433 456 -CCUUUAGGGA--CCGUUACACUA- || |||: ||||:|||||| UGGU--UCCUCUGGGCAGUGUGAUC Trim8; Gerp; Rnf27 mmu-miR-23b 433 456 -CCAUUAGGGA--CCGUUACACUA- ||| |||: ||||:|||||| UGGU--UCCUCUGGGCAGUGUGAUC Trim8; Gerp; Rnf27 mmu-miR-24 434 453 GACAAGGACGACUUGACUCGGU |||||| |||::| | |: -GGUUCCU-CUGGGCAGUGUG- Trim8; Gerp; Rnf27 mmu-miR-28 274 297 -GAGUUAUCUGACACUCGAG-GAA- |||| ||:| ||:|||| ||| ACUCA--AGGCACUGGGCUCUCUUU Trim8; Gerp; Rnf27 mmu-miR-296 198 232 UGUCCUA-ACU-CC-CCC----------CCGGGA- |||| ||| || ||| |||||| -GAGGAGGUGACGGUGGGAAGUAGCCUUGGCCCUU Trim8; Gerp; Rnf27 mmu-miR-298 389 416 -CCUUCUUGUCGGGA----GGAGACGG- ||:|| :|||||| || ||||| UGGGAG-GCAGCCCAGCACCCACUGCCC Trim8; Gerp; Rnf27 mmu-miR-300 197 237 -CUUCUC---------------UCGAA--CGGGAAC-GUAU ||:||| ||| ||||||| || UGAGGAGGUGACGGUGGGAAGUAGCCUUGGCCCUUGGCAG- Trim8; Gerp; Rnf27 mmu-miR-324-3p 215 240 GGUCGUCGUGGACC-----CCGUCACC- ||:||| |:||| ||||| || -AAGUAGC-CUUGGCCCUUGGCAG-GGG Trim8; Gerp; Rnf27 mmu-miR-324-5p 219 245 GUGGUUACGGGA----UCCCCUACGC :|| ||||| ||||| ||| AGCCUUGGCCCUUGGCAGGGGCUGCA Trim8; Gerp; Rnf27 mmu-miR-326 350 397 -UGACCU---------CCUUCC-------------CGGG- UCUCC :||||| ||| || |||| :|||| GGCUGGAAGAAGCCCUGGAUGGCAGCUCUUUGCUCGCCCUGGGAGGC Trim8; Gerp; Rnf27 mmu-miR-331 210 242 AAGAUCCUAU-------CCGGG-----UCCCCG- |:||| ||||| |||||| --GUGGGAAGUAGCCUUGGCCCUUGGCAGGGGCU Trim8; Gerp; Rnf27 mmu-miR-337 234 264 -UUUCCGUAG--UAUAU---CCUCGACUU- |::||| :|| ||||:||:: CAGGGGCUGCAGGUAGCCCUGGAGUUGGGA Trim8; Gerp; Rnf27 mmu-miR-339 236 265 ACUCGA---------GGACCUCCUGUCCCU- |:||| ||||||| |||| GGGGCUGCAGGUAGCCCUGGAGUU--GGGAC Trim8; Gerp; Rnf27 mmu-miR-340 237 264 -CCGAUAUUUCAUUGA---CUCUGCCU- ||||: |:|||:| ||| ||: GGGCUGC-AGGUAGCCCUGGAGUUGGGA Trim8; Gerp; Rnf27 mmu-miR-346 231 267 UCUCCGUCCGUGA-GCCCG-------------UCUGU- |||||| :|| | ||: :|||| --UGGCAGGGGCUGCAGGUAGCCCUGGAGUUGGGACAG Trim8; Gerp; Rnf27 mmu-miR-34a 393 416 -UUGUU-GGUCGAUUCUGUGACGGU ::||: ||||| ||||||| AGGCAGCCCAGCACC--CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-34b 400 416 GUUAGUCGAUUAAUGUGACGGAU |||| ||||||| ---CCAGCACC---CACUGCCC- Trim8; Gerp; Rnf27 mmu-miR-34c 394 416 -CGUUA-GUCGAUUGAUGUGACGGA |||: |||| || ||||||| GGCAGCCCAGC--ACC-CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-351 208 241 GUCCGAGUUUC-------CCGAGGA---GUCCCU- ||: :||| ||| ||| |||||: -CGGUGGGAAGUAGCCUUGGC-CCUUGGCAGGGGC Trim8; Gerp; Rnf27 mmu-miR-376c 485 506 GCACUUUAAAGGAGAUACAA- |||:|: |::||| |||| UGUGGAGGGUUUUCUUUGUUU Trim8; Gerp; Rnf27 mmu-miR-378 241 265 UGUGUCCU---GGACCUCAGUCCUC :|||| ||||||||::||| -UGCAGGUAGCCCUGGAGUUGGGAC Trim8; Gerp; Rnf27 mmu-miR-412 443 467 UGCCGAUCAC-CUGGU--CCACUUCA ||| |||| ||:|| ||||:|| -GGGC-AGUGUGAUCACUGGUGGAGA Trim8; Gerp; Rnf27 mmu-miR-449 395 416 UGGUCGA-UUGUUAUGUGACGGU |||| |:|| ||||||| -GCAGCCCAGCACC-CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-449b 395 416 GGUCGA-UCGUUACGUGACGGA |||| |||| ||||||| GCAGCCCAGCACC-CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-451 188 213 UUGAG--UC-AUUA--CCAUUGCCAAA ||| :| |:| |||:||||| -UCUCCUGGAUGAGGAGGUGACGGUG- Trim8; Gerp; Rnf27 mmu-miR-455-3p 208 246 -UCACA---UAUA-----CGGGCA-----CCUGACGUA :||| :|| |||| ||:||||| CGGUGGGAAGUAGCCUUGGCCCUUGGCAGGGGCUGCAG Trim8; Gerp; Rnf27 mmu-miR-455-5p 567 584 GCUACAUCAGGUUUCCGUGUAU |||:|||:| ||||| -----AAGUUCAAGGCCACAUC Trim8; Gerp; Rnf27 mmu-miR-465-3p 350 369 AGAUGAAUCUUUC--CGGGACUAG :|| |:||| ||||||: --GGCU--GGAAGAAGCCCUGGA- Trim8; Gerp; Rnf27 mmu-miR-470 628 653 AGUGGUCA-CGGU---CAGGUUCUU- :|||| ||| ||||||||| -AGCCAGGAGCCCCGUGUCCAAGAAA Trim8; Gerp; Rnf27 mmu-miR-483 184 217 -UGU------UCUGC-CCUCCCCU-CCUCACU- :|| :||:| ||||| || || | || UGCAUCUCCUGGAUGAGGAGGUGACGGUGGGAA Trim8; Gerp; Rnf27 mmu-miR-485-5p 567 598 CUUAAGUAGUGCCGG-----------UCGGAGA- |:|||| |||| |||||:| AAGUUCAA---GGCCACAUCUCAAGCAGCCUUUG Trim8; Gerp; Rnf27 mmu-miR-532 258 285 UGCC-------AGGAUGUGAGUUCCGUAC :|| ||:|| |||||||||| UUGGGACAGUAUCUUA-ACUCAAGGCAC- Trim8; Gerp; Rnf27 mmu-miR-615 15 57 UUCUC---CCUCUGGG---------------U-CCGAGCCU :|| ||:||||| : |||||||: UGGACGCUGGGGACCCUUCUCCCCAGCCCCGGUGGCUCGGGA Trim8; Gerp; Rnf27 mmu-miR-666 373 420 CCGAGAG---------------UGUCGAC---------ACGGGCGA |||||: :|||| ||||||:| AGCUCUUUGCUCGCCCUGGGAGGCAGCCCAGCACCCACUGCCCGUUU Trim8; Gerp; Rnf27 mmu-miR-667 228 249 -GAACCCGACCCAC-CGUCCACAGU ||| ||| ||| |||||| CCUU-GGCAGGGGCUGCAGGUA--- Trim8; Gerp; Rnf27 mmu-miR-668 231 267 -CCAUCACCCGGC-----UCGG---CUCA---CUGU- || || ||||:| |||| |||| |||| UGGCAG-GGGCUGCAGGUAGCCCUGGAGUUGGGACAG Trim8; Gerp; Rnf27 mmu-miR-671 421 448 -GGAGG-------UCGGGGAGGUCCCGAAGGA ||||| :|::||||: |||| UCCUCCCUUCACUGGUUCCUCU-GGGCA---- Trim8; Gerp; Rnf27 mmu-miR-675-5p 19 47 -UGACACCC-GGGAA-AGG---CGUGGU- :||| ||| ||||| ||| || ||: CGCUG-GGGACCCUUCUCCCCAGCCCCGG Trim8; Gerp; Rnf27 mmu-miR-676 349 373 -UCGAGUUG--UUGGAGUCCUGCC- :||| :| |:|| | |||:|| UGGCUGGAAGAAGCC-CUGGAUGGC Trim8; Gerp; Rnf27 mmu-miR-676* 469 493 CGUUCA--GGA-UUCCAACAUCUCA :||| ||| :|| ||||:||| -AGAGUGACCUAGAGAUUGUGGAGG Trim8; Gerp; Rnf27 mmu-miR-680 342 366 -GGGGGUACAG-UCGUCUACGGG- |||||||| :| ||| |||| ACCCCCAUGGCUGGAAGAAGCCCU Trim8; Gerp; Rnf27 mmu-miR-681 215 244 -UCGACGGA--CGG---UCG-CUCCGAC- ||: |||| ||| :|| |:||||| AAGUAGCCUUGGCCCUUGGCAGGGGCUGC Trim8; Gerp; Rnf27 mmu-miR-682 217 247 -GUCUGAAGUG---ACA----CUGACGUC- :|| ||| :| || |:|||||| GUAGCCUUGGCCCUUGGCAGGGGCUGCAGG Trim8; Gerp; Rnf27 mmu-miR-685 575 600 CACGGAGUGGAG----UCGGUAACU- ||| ||:||| |||| |||: -GGCCACAUCUCAAGCAGCCUUUGGC Trim8; Gerp; Rnf27 mmu-miR-686 375 400 -AGAAGUG-GCA-GACCCUUCGUUA ||||::| || ||||||:|||: CUCUUUGCUCGCCCUGGGAGGCAGC Trim8; Gerp; Rnf27 mmu-miR-689 244 266 -CC--UGGGGCGGCUCGCCCCUGC || :|||:| ||| ||||| AGGUAGCCCUG--GAGUUGGGACA Trim8; Gerp; Rnf27 mmu-miR-690 202 226 AAACCAA---CACUCGG-AUCGGAAA ||| |||:| ||||||| --AGGUGACGGUGGGAAGUAGCCUUG Trim8; Gerp; Rnf27 mmu-miR-693-3p 574 594 AAUGUCGGUGUAGACUUUCGACG- :||||||||| |||| || ---AGGCCACAUCUC-AAGCAGCC Trim8; Gerp; Rnf27 mmu-miR-697 187 207 -AGAGGUGUCCUGGUCCUACAA ||||| |||: |||| || AUCUCCU--GGAUGAGGAGGUG Trim8; Gerp; Rnf27 mmu-miR-699 391 416 GCUCGGUCCAG-CG----UGACGGA ||| ||| || |||||| GGAGGCAGCCCAGCACCCACUGCCC Trim8; Gerp; Rnf27 mmu-miR-702 193 216 CUCG---CC-CCAUUUCCCACCCGU :| || |||:| |||||| UGGAUGAGGAGGUGAC-GGUGGGA- Trim8; Gerp; Rnf27 mmu-miR-705 379 413 -ACGGGUGGGG--------UGGA----GGGUGG- |||:|:|||: :|| |||||: UUGCUCGCCCUGGGAGGCAGCCCAGCACCCACUG Trim8; Gerp; Rnf27 mmu-miR-709 417 441 -AGGAGGACGGA---GACGGAGG- |:||||| ||| ||| :||| UUUCUCCUCCCUUCACUGGUUCCU Trim8; Gerp; Rnf27 mmu-miR-712* 37 57 -GUUGUGGGCCCCCACUGAGCGU- ||:| ||||| ||:|||| : CCAGC-CCCGG---UGGCUCGGGA Trim8; Gerp; Rnf27 mmu-miR-714 70 95 CGCUGGCUGGCC-----GGGAGCAGC |||||:|| ||||| || -AGACCGGCCCUUUCCACCCUCCUCU Trim8; Gerp; Rnf27 mmu-miR-718 224 247 GCUGUGGGCCGG-CCCGCCUUC- |:| | ||| |||| | || UGGCCCUUGGCAGGGGCUGCAGG Trim8; Gerp; Rnf27 mmu-miR-742 35 53 AAAUGGGUCGUA-CCACCGAAAG |||||| ||||||| ---CCCCAGCCCCGGUGGCUC-- Trim8; Gerp; Rnf27 mmu-miR-744 208 237 -CGACA----AUCGGGAUCGGGG--CGU- | || |||||:|:||||: ||| CGGUGGGAAGUAGCCUUGGCCCUUGGCAG Trim8; Gerp; Rnf27 mmu-miR-762 20 46 CGAGACA---GGGCC--GGGGUCGGGG- ||| ||| |||||||||| --GCUGGGGACCCUUCUCCCCAGCCCCG Trim8; Gerp; Rnf27 mmu-miR-93 362 383 GAUGGACGUGCUUGUCGUGAAAC- |||| |:| :|||| ||||| --CCCUGGAUG-GCAGCUCUUUGC Trim8; Gerp; Rnf27 mmu-miR-185 92 99 CUUGAC------------------------GGAA-AGAGAGGU ||| ||||||| AUUAUGCAUUCAGAGACCGGCCCUUUCCACCCUCCUCUCUCCU Trim8; Gerp; Rnf27 mmu-miR-22 370 377 UGUCAAGAAGUUG--------------------------ACCGUCGAA ||||| |||||||| C-----CUUCACACCCCCAUGGCUGGAAGAAGCCCUGGAUGGCAGCUC Trim8; Gerp; Rnf27 mmu-miR-324-3p 444 451 --------------------GGUCGUCGUGGAC-CCCGUCACC :|| :|: ||| |||||||| ACUGCCCGUUUCUCCUCCCUUCACUGGUUCCUCUGGGCAGUGU Trim8; Gerp; Rnf27 mmu-miR-34a 408 415 ---------------------UUGUUGG-UCGAUUCUGUGACGGU ::||:|| ||| ||||||| AGCUCUUUGCUCGCCCUGGGAGGCAGCCCAGCACC--CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-34c 408 415 ----------------------CGUUA-GUCGAUUGAUGUGACGGA |||: |||| || ||||||| AGCUCUUUGCUCGCCCUGGGAGGCAGCCCAGC--ACC-CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-449 408 415 ---------------------UGGUCGA-UUGUUAUGUGACGGU : |||| |:|| ||||||| AGCUCUUUGCUCGCCCUGGGAGGCAGCCCAGCACC-CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-449b 408 415 G----------------------GUCGA-UCGUUACGUGACGGA |||| |||| ||||||| AGCUCUUUGCUCGCCCUGGGAGGCAGCCCAGCACC-CACUGCCC Trim8; Gerp; Rnf27 mmu-miR-470 644 651 AG------------------UGGUCA-CGGU---CAGGUUCUU :|||| ||| ||||||||| CCCAAGUGGAAUCUUUCAAAGCCAGGAGCCCCGUGUCCAAGAAA Trim8; Gerp; Rnf27 mmu-miR-615 48 55 UUCUC-----CCUCUGGGU----------------CCGAGCCU ||:||||| |||||||: AAUGGACGCUGGGGACCCUUCUCCCCAGCCCCGGUGGCUCGGGA Trim8; Gerp; Rnf27 mmu-miR-665 189 196 AUUCCCUGGA----------------------GUCGGAGGACCA || :||||||| UCUUGUUUUGAUUUUUUUUUUUUUUAAUUAUGCA-UCUCCUGGA Trim8; Gerp; Rnf27 mmu-miR-668 470 477 ---------CCAUCAC--------CCGGCUCGG--CUCACUGU || |||| ||: ||| ||||||| GUUCCUCUGGGCAGUGUGAUCACUGGUGGAGAAAAGAGUGACC Trim8; Gerp; Rnf27 mmu-miR-690 218 225 AAA-----------------CCAA---CACUCGG-AUCGGAAA ||| |||:| ||||||| AUGCAUCUCCUGGAUGAGGAGGUGACGGUGGGAAGUAGCCUUG Trim8; Gerp; Rnf27 mmu-miR-693-3p 651 658 AA---------------UGUCGGUGUAGA----C-UUUCGACG : |||| |:| | | ||||||| GGAAUCUUUCAAAGCCAGGAGCCCCGUGUCCAAGAAAAGCUGA Trim8; Gerp; Rnf27 mmu-miR-699 408 415 GC----------------------UCGG-UCCAGCGUGACGGA |||| || | ||||||| AGCUCUUUGCUCGCCCUGGGAGGCAGCCCAGCACCCACUGCCC Trim8; Gerp; Rnf27 mmu-miR-762 37 44 ------------------CGAGACA-GGGCC--GGGGUCGGGG ||| | ||| |||||||||| GCCAAGCAGGCAAUGGACGCUGGGGACCCUUCUCCCCAGCCCCG Trim8; Gerp; Rnf27 mmu-miR-103 221 244 aGUAUCGGGACAUGU-UACGACGa | |:||||| :|| : ||||| cCTTGGCCCTTGGCAGGGGCTGCa Trim8; Gerp; Rnf27 mmu-miR-106a 267 288 AUGGACGUGACAAUCGUGAaac ||:|| ||| :||||| TATCTTAACTCAAGGCACTggg Trim8; Gerp; Rnf27 mmu-miR-107 221 244 acuAUCGGGACAUGU-UACGACGa |:||||| :|| : ||||| cctTGGCCCTTGGCAGGGGCTGCa Trim8; Gerp; Rnf27 mmu-miR-10b 226 247 uguguuuaagCCAAGAUGUCCc || ||:|||| gcccttggcaGGGGCTGCAGGt Trim8; Gerp; Rnf27 mmu-miR-122a 68 92 UGUUUG--UGGUAACAGUGUGAGGu | |:|| :|| || ||| |||| AGAGACCGGCCCTTTCCACCCTCCt Trim8; Gerp; Rnf27 mmu-miR-127 2 32 CGGUUCG--AGU---CUG-----CCUAGGcu ||||||| || ||| ||| || GCCAAGCAGGCAATGGACGCTGGGGACCCtt Trim8; Gerp; Rnf27 mmu-miR-129-3p 216 242 uacgaaaAACC-----CCAUUCCCGAa |||| || |:||||| agtagccTTGGCCCTTGGCAGGGGCTg Trim8; Gerp; Rnf27 mmu-miR-133a 7 31 uGU-CG--ACCAACUUCCCCUGGuu || || ||| | ||||||| gCAGGCAATGGACGCTGGGGACCct Trim8; Gerp; Rnf27 mmu-miR-133b 9 31 auCG--ACCAACUUCCCCUGGuu || ||| | ||||||| agGCAATGGACGCTGGGGACCct Trim8; Gerp; Rnf27 mmu-miR-136 597 620 agGUAGUAGUUU-UGUUUACCUca |||| ||||| |||:|||| ggCATCTTCAAACCCAAGTGGAat Trim8; Gerp; Rnf27 mmu-miR-150 455 492 GUGACCA----UGUUC-----------CCAAC-CCUCu ||||||| | ||| | ||| |||| CACTGGTGGAGAAAAGAGTGACCTAGAGATTGTGGAGg Trim8; Gerp; Rnf27 mmu-miR-181a* 4 25 ccauGUUAGUUGCCAGCUACCa ||: |||:|| || ||| caagCAGGCAATGGACGCTGGg Trim8; Gerp; Rnf27 mmu-miR-185 81 99 cuugacGGA-AAGAGAGGu ||| ||||||| ttccacCCTCCTCTCTCCt Trim8; Gerp; Rnf27 mmu-miR-185 407 424 cuUGACGGAAAGAGAGGu |||||| |:||||| ccACTGCCCGTTTCTCCt Trim8; Gerp; Rnf27 mmu-miR-188 219 242 UGGGAGGUGGUA--CGUUCCCUAC | |||: :|| | |||:||| || AGCCTTGGCCCTTGGCAGGGGCTG Trim8; Gerp; Rnf27 mmu-miR-200a 429 453 uGUAGCAAUGG---UCUGUCACAau || :| | || :|:|||||| tCACTGGTTCCTCTGGGCAGTGTga Trim8; Gerp; Rnf27 mmu-miR-200c 426 453 GGUAGU----AAUGGG--CCGUCAUAau || ||| || |:| ||||||:| CCTTCACTGGTTCCTCTGGGCAGTGTga Trim8; Gerp; Rnf27 mmu-miR-207 192 218 cuCC--CUCCUCU-CGGUC-CUCUUCg || ||||||: | |:| |:|||| ctGGATGAGGAGGTGACGGTGGGAAGt Trim8; Gerp; Rnf27 mmu-miR-20a 266 288 gAUGGACGUGAUAUUCGUGAaau ||:|| ||| |:||||| gTATCTTAACTCAAGGCACTggg Trim8; Gerp; Rnf27 mmu-miR-22 358 377 ugUCAAGAAGUUGACCGUCGAa || || | |||||||| gaAGCCCTGGA--TGGCAGCTc Trim8; Gerp; Rnf27 mmu-miR-22 371 401 uGUCAAGA----AGU-UGA----CCGUCGaa ||| ||| ||: || |||||| gCAGCTCTTTGCTCGCCCTGGGAGGCAGCcc Trim8; Gerp; Rnf27 mmu-miR-224 691 721 aUUUGCCUU-----GGU---GAUCACUGaau ||| |||| ||| ||||||| aAAAAGGAACTTTGCCAATGATAGTGACcac Trim8; Gerp; Rnf27 mmu-miR-23a 432 454 ccuuuAGG-GA-CCGUUACACUA ||| || ||||:|||||| ctggtTCCTCTGGGCAGTGTGAT Trim8; Gerp; Rnf27 mmu-miR-23b 434 454 CCAUUAGG-GA-CCGUUACACUA ||| ||| || ||||:|||||| GGT--TCCTCTGGGCAGTGTGAT Trim8; Gerp; Rnf27 mmu-miR-24 432 448 GA-CAAGGACGACUUGACUCGgu || |||||| |||:|| CTGGTTCCT------CTGGGCag Trim8; Gerp; Rnf27 mmu-miR-28 275 295 GAGUUAUCUGACACUCGAG-GAA |||| ||:| ||:|||| ||| CTCA--AGGCACTGGGCTCTCTT Trim8; Gerp; Rnf27 mmu-miR-296 224 243 uguccuAACUCCCCCCCGgga ||| | ||||| tggcccTTG-GCAGGGGCtgc Trim8; Gerp; Rnf27 mmu-miR-298 390 414 CCUUCUUGUCGGG----AGGAGACGG ||:|| :|||||| || ||||| GGGAG-GCAGCCCAGCACCCACTGCC Trim8; Gerp; Rnf27 mmu-miR-300 214 237 CUUC-UCUCGAACGGGAA-CGUau |||| || :| |||||| ||| GAAGTAGCCTTGGCCCTTGGCAgg Trim8; Gerp; Rnf27 mmu-miR-320 382 408 aAGCGGGA----GAGUUGGGUCGaaaa ||||||| ||:|||||| cTCGCCCTGGGAGGCAGCCCAGCaccc Trim8; Gerp; Rnf27 mmu-miR-324-3p 429 451 gGUCGUCGUGGA-CCCCGUCACc || ::|: ||| |||||||| tCACTGGTTCCTCTGGGCAGTGt Trim8; Gerp; Rnf27 mmu-miR-324-3p 214 239 ggUCGUCGUGGACC-----CCGUCACC ||:||| |:||| ||||| || gaAGTAGC-CTTGGCCCTTGGCAGGGG Trim8; Gerp; Rnf27 mmu-miR-326 387 406 uGA-CCUCCUUCCCGGGUCucc || ||||| | |||||| cCTGGGAGGCA--GCCCAGcac Trim8; Gerp; Rnf27 mmu-miR-331 220 240 aaGAUCC--UAUCCGGGUCCCCG || || | || ||||||| gcCTTGGCCCTTGG--CAGGGGC Trim8; Gerp; Rnf27 mmu-miR-337 222 244 uuuCCGUAGUAUAUCCUCGACuu ||| : : |||:|||| cttGGCCCTTGGCAGGGGCTGca Trim8; Gerp; Rnf27 mmu-miR-339 217 239 acUCGAGGACC---UCCUGUCCCu ||| |:||| |:||||| gtAGC-CTTGGCCCTTGGCAGGGg Trim8; Gerp; Rnf27 mmu-miR-339 246 269 acUCGAGGACCU----CCUGUCccu ||| |||||| |||||| gtAGC-CCTGGAGTTGGGACAGtat Trim8; Gerp; Rnf27 mmu-miR-340 238 262 CCGAUAUUUCAUU--GA-CUCUGCCu ||||: |:|||: || ||| :|| GGCTG-CAGGTAGCCCTGGAGTTGGg Trim8; Gerp; Rnf27 mmu-miR-346 229 252 ucuCCGUCCGUGA-GCCCGUCUGu |||||| :|| | ||:|| | cttGGCAGGGGCTGCAGGTAGCCc Trim8; Gerp; Rnf27 mmu-miR-34a 394 415 uuGUU-GGUCGAUUCUGUGACGGu ||: ||||| | ||||||| ggCAGCCCAGC--ACCCACTGCCc Trim8; Gerp; Rnf27 mmu-miR-34b 392 416 gUUAGUCGAUUAAU--GUGACGGau |: |||| | | ||||||| gAGGCAGCCCAGCACCCACTGCCcg Trim8; Gerp; Rnf27 mmu-miR-34c 395 415 CGUU-AGUCGAUUGAUGUGACGGa |||: |||| || ||||||| GCAGCCCAGC--AC-CCACTGCCc Trim8; Gerp; Rnf27 mmu-miR-351 218 239 gUCCGAGUUUCCCGAGGA---GUCCCu || ||: ||| ||| ||||| tAGCCTT----GGC-CCTTGGCAGGGg Trim8; Gerp; Rnf27 mmu-miR-378 240 264 uguGUCC-U--GGACCUCAGUCCUc |||| | ||||||||::||| ctgCAGGTAGCCCTGGAGTTGGGAc Trim8; Gerp; Rnf27 mmu-miR-412 442 466 ugCCGAUCAC-CUGGU--CCACUUCa ||| |||| ||:|| ||||:|| tgGGC-AGTGTGATCACTGGTGGAGa Trim8; Gerp; Rnf27 mmu-miR-449 399 415 uGGUCGAUUGUUAUGUGACGGu ||||| || ||||||| cCCAGC--AC---CCACTGCCc Trim8; Gerp; Rnf27 mmu-miR-449b 395 415 gGUC-GAUCGUUACGUGACGGa ||| | ||| | ||||||| gCAGCCCAGC-ACCCACTGCCc Trim8; Gerp; Rnf27 mmu-miR-451 194 213 uugAGUCAUUACCAUUGCCAaa | || | |||:||||| ggaTGAGGA--GGTGACGGTgg Trim8; Gerp; Rnf27 mmu-miR-455-3p 216 245 UCA-CAUAUACGGGCA-----CCUGACGUa ||| | | |||| | ||:||||| AGTAGCCTTGGCCCTTGGCAGGGGCTGCAg Trim8; Gerp; Rnf27 mmu-miR-455-5p 564 583 GCUACAUCAGGUUUCCGUGUAu || | |||:|||:| ||||| CG--GAAGTTCAAGGCCACATc Trim8; Gerp; Rnf27 mmu-miR-465-3p 347 369 agaugaAUCUU-UCCGGGACuag |:||| | |||||| catggcTGGAAGAAGCCCTGgat Trim8; Gerp; Rnf27 mmu-miR-470 624 651 AGU---GGU-CACGG---UCAGGUUCUU ||| ||| | ||| ||||||||| TCAAAGCCAGGAGCCCCGTGTCCAAGAA Trim8; Gerp; Rnf27 mmu-miR-483 186 207 uguucuGCCCUCCCCUCCU-CACU | ||| ||||| |||| catctcCTGGA--TGAGGAGGTGA Trim8; Gerp; Rnf27 mmu-miR-485-5p 575 596 cuuaaGUAGUGCCGGUCGGAGA |||| | ||||||:| ggccaCATCTCAAGCAGCCTTT Trim8; Gerp; Rnf27 mmu-miR-532 263 285 UGCCA-GGAUGUGAGUUCCGUac || || :|| |||||||||| ACAGTATCTTAACTCAAGGCAct Trim8; Gerp; Rnf27 mmu-miR-615 32 55 uucucccUCUGGGU--CCGAGCCu || |||: ||||||| tctccccAGCCCCGGTGGCTCGGg Trim8; Gerp; Rnf27 mmu-miR-665 176 196 auucccuggaGUCGGAGGACCa || :||||||| tttaattatgCA-TCTCCTGGa Trim8; Gerp; Rnf27 mmu-miR-666 402 418 cCGAGAGUGUCGACACGGGCGA || | ||| ||||||:| aGCACCCAC-----TGCCCGTT Trim8; Gerp; Rnf27 mmu-miR-666 366 387 CCGAGAGUGUCGACACGGGCGa || | || || |||:||| GGATGGCAGCTCTTTGCTCGCc Trim8; Gerp; Rnf27 mmu-miR-667 229 252 GAACCCGACCCACCGUCCA-CAGu ||||| ||| |||||| | | CTTGGCAGGGGCTGCAGGTAGCCc Trim8; Gerp; Rnf27 mmu-miR-668 444 477 CCAUCAC--------CCGGCUC--GGCUCACUGu || |||| ||: ||| ||||||| GGCAGTGTGATCACTGGTGGAGAAAAGAGTGACc Trim8; Gerp; Rnf27 mmu-miR-668 232 265 CCAUCACCCGGC-----UCGG---CUCA---CUGU || || ||||:| |||| |||| |||| GGCAG-GGGCTGCAGGTAGCCCTGGAGTTGGGACA Trim8; Gerp; Rnf27 mmu-miR-671 419 440 gGAGGUCGGGGAGGU-CCCGAAGGA |||| :||||:|| || ||||| tCTCC--TCCCTTCACTGG-TTCCT Trim8; Gerp; Rnf27 mmu-miR-675-5p 20 43 uGACACCCGGGAA-AGGCGU-GGu ||| || ||||| ||| || || gCTGGGGACCCTTCTCCCCAGCCc Trim8; Gerp; Rnf27 mmu-miR-676 350 371 uCGA-GUUGUUGGAGUCCUGCC ||| || || | | |||:|| gGCTGGAAGAAGCCCTGGATGG Trim8; Gerp; Rnf27 mmu-miR-676* 468 492 cguUCA--GGAU-UCCAACAUCUCa ||| |||| || ||||:||| aagAGTGACCTAGAGATTGTGGAGg Trim8; Gerp; Rnf27 mmu-miR-680 343 364 GGGGGUACAG-UCGUCUACGGG |||||||| | :| ||| |||| CCCCCATGGCTGGAAGAAGCCC Trim8; Gerp; Rnf27 mmu-miR-681 216 242 UCGACGGA--CGG---UCG-CUCCGAC ||: |||| ||| :|| |:||||| AGTAGCCTTGGCCCTTGGCAGGGGCTG Trim8; Gerp; Rnf27 mmu-miR-682 225 245 gucuGAAGUGACACUGACGUC ||| :| | |:|||||| ggccCTTGGCAGGGGCTGCAG Trim8; Gerp; Rnf27 mmu-miR-685 574 598 caCGGAGUGGA----GUCGGUAACu ||| ||:|| ||||| ||| agGCCACATCTCAAGCAGCCTTTGg Trim8; Gerp; Rnf27 mmu-miR-686 376 399 AGAAGUG-GC-AGACCCUUCGUua ||||::| || ||||||:||| TCTTTGCTCGCCCTGGGAGGCAgc Trim8; Gerp; Rnf27 mmu-miR-689 245 265 CC--UGGGGCGGCUCGCCCCUGc || :|||:| |||: ||||| GGTAGCCCTG--GAGTTGGGACa Trim8; Gerp; Rnf27 mmu-miR-690 206 225 aaaCCAACACUCGGAUCGGAAa ||| | || ||||||| gacGGTGGGAAG--TAGCCTTg Trim8; Gerp; Rnf27 mmu-miR-693-3p 631 658 aaugUCGGUGUAGA----C-UUUCGACg |||| |:| | | ||||||| caggAGCCCCGTGTCCAAGAAAAGCTGa Trim8; Gerp; Rnf27 mmu-miR-693-3p 571 592 AAUGUCGGUGUAGACUUUCGACG | | :||||||||| |||| || TCAAGGCCACATCT-CAAGCAGC Trim8; Gerp; Rnf27 mmu-miR-697 188 206 AGAGGUGUCCUGGUCCUACAa |||| | |||: |||| || TCTC--CTGGATGAGGAGGTg Trim8; Gerp; Rnf27 mmu-miR-699 395 415 gcUC-GGUCCAGCGUGACGGa || |||| | ||||||| gcAGCCCAGCACCCACTGCCc Trim8; Gerp; Rnf27 mmu-miR-702 198 216 CUCGCCCCAUUUCCCACCCgu ||| | ||| :| |||||| GAG-GAGGT-GACGGTGGGaa Trim8; Gerp; Rnf27 mmu-miR-705 392 411 acggGUGGGGUGGAGGGUGg || |||| | ||||| gaggCAGCCCAGCACCCACt Trim8; Gerp; Rnf27 mmu-miR-705 411 433 ACGGGUGGGGUGGAGG---GUGg |||||::::| ||||| ||| TGCCCGTTTCTCCTCCCTTCACt Trim8; Gerp; Rnf27 mmu-miR-709 418 442 AGGAGGACGGA---GAC---GGAGg |:||||| ||| ||| |||| TTCTCCTCCCTTCACTGGTTCCTCt Trim8; Gerp; Rnf27 mmu-miR-712* 38 55 GUUGUGGGCCCCCACUGAGCgu ||:| ||| ||||:|||| CAGC-CCC---GGTGGCTCGgg Trim8; Gerp; Rnf27 mmu-miR-714 69 94 CGCUGGCUG-----GCCGGGAGCAGc | |||||:| | ||||| || GAGACCGGCCCTTTCCACCCTCCTCt Trim8; Gerp; Rnf27 mmu-miR-742 32 54 AAAUGGGUC-GUACCACCGAaag | | ||||| | ||||||| TCTCCCCAGCCCCGGTGGCTcgg Trim8; Gerp; Rnf27 mmu-miR-744 213 233 cgacaAUCGGGAUCGGGgcgu |||||:|:|||| ggaagTAGCCTTGGCCCttgg Trim8; Gerp; Rnf27 mmu-miR-762 20 44 CGA-GACAGGG--CCGGGGUCGGGG ||| | ||| |||||||||| GCTGGGGACCCTTCTCCCCAGCCCC Trim8; Gerp; Rnf27 mmu-miR-93 360 381 gauGGACGUGCUUGUCGUGAAAC |||| |:| :|||| ||||| agcCCTGGATG-GCAGCTCTTTG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim8 RAID00061125 mmu-miR-7006-5p miRNA MIMAT0027916 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00068918 mmu-miR-5619-5p miRNA MIMAT0022365 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00080382 mmu-miR-3113-5p miRNA MIMAT0014959 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00088200 mmu-miR-7648-3p miRNA MIMAT0029799 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00146296 mmu-miR-665-3p miRNA MIMAT0003733 Trim8 mRNA 93679 Prediction 0.2202 Trim8 RAID00166898 mmu-miR-204-5p miRNA MIMAT0000237 Trim8 mRNA 93679 CLIP-seq//Prediction 0.6308 Trim8 RAID00236321 mmu-miR-7680-3p miRNA MIMAT0029875 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00365091 mmu-miR-3073b-5p miRNA MIMAT0022375 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00479371 mmu-miR-185-5p miRNA MIMAT0000214 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00730481 mmu-miR-504-5p miRNA MIMAT0004889 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00913074 mmu-miR-615-3p miRNA MIMAT0003783 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00962314 mmu-miR-6940-5p miRNA MIMAT0027780 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00963438 mmu-miR-9769-3p miRNA MIMAT0036462 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00967458 mmu-miR-8100 miRNA MIMAT0031403 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID00990368 mmu-miR-203-3p miRNA MIMAT0000236 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01042671 mmu-miR-7034-3p miRNA MIMAT0027973 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01141095 mmu-miR-7049-3p miRNA MIMAT0028003 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01155483 mmu-miR-1952 miRNA MIMAT0009423 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01167940 mmu-miR-22-3p miRNA MIMAT0000531 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01342419 mmu-miR-1306-5p miRNA MIMAT0019136 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01633882 mmu-miR-126a-5p miRNA MIMAT0000137 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01639595 mmu-miR-6387 miRNA MIMAT0025134 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01699815 mmu-miR-3073a-5p miRNA MIMAT0014854 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID01726817 mmu-miR-494-3p miRNA MIMAT0003182 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02096327 mmu-miR-882 miRNA MIMAT0004847 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02118322 mmu-miR-669h-3p miRNA MIMAT0005842 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02129425 mmu-miR-590-3p miRNA MIMAT0004896 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02145078 mmu-miR-216b-5p miRNA MIMAT0003729 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02167650 mmu-miR-7215-5p miRNA MIMAT0028398 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02197940 mmu-miR-876-5p miRNA MIMAT0004854 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02258618 mmu-miR-692 miRNA MIMAT0003471 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02373810 mmu-miR-3109-3p miRNA MIMAT0014950 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02400484 mmu-miR-149-3p miRNA MIMAT0016990 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02496180 mmu-miR-693-3p miRNA MIMAT0004189 Trim8 mRNA 93679 CLIP-seq 0.5483 Trim8 RAID02537578 mmu-miR-6982-5p miRNA MIMAT0027866 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02565670 mmu-miR-5627-5p miRNA MIMAT0022385 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02586908 mmu-miR-211-5p miRNA MIMAT0000668 Trim8 mRNA 93679 CLIP-seq//Prediction 0.6308 Trim8 RAID02778532 mmu-miR-664-3p miRNA MIMAT0012774 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02811137 mmu-miR-6988-5p miRNA MIMAT0027878 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02816498 mmu-miR-3083-5p miRNA MIMAT0014874 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02914558 mmu-miR-551b-5p miRNA MIMAT0017236 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID02953752 mmu-miR-208a-5p miRNA MIMAT0017014 Trim8 mRNA 93679 CLIP-seq 0.5483 Trim8 RAID03174452 mmu-miR-762 miRNA MIMAT0003892 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID03325733 mmu-miR-182-5p miRNA MIMAT0000211 Trim8 mRNA 93679 CLIP-seq//Prediction 0.6592 Trim8 RAID03446033 mmu-miR-136-5p miRNA MIMAT0000148 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID03479090 mmu-miR-7236-5p miRNA MIMAT0028440 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID03569747 mmu-miR-673-3p miRNA MIMAT0004824 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID03714444 mmu-miR-7663-5p miRNA MIMAT0029832 Trim8 mRNA 93679 Prediction 0.1828 Trim8 RAID03940710 mmu-miR-669k-3p miRNA MIMAT0005831 Trim8 mRNA 93679 Prediction 0.1828