DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rab40b; mCG_12380 ATTTA 107-943 1154-1158;1807-1811

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 217371 Rab40b cguuccgucaccGGACAUGUca ::|||||| aaaccuacauauUUUGUACAaa 3 11 710 731 [mm9:11:121217620-121217641:-] 0.7197 122 0 -7.50 -0.2869 MIMAT0000129 mmu-miR-30a* 217371 Rab40b cgacguuuguaggcuGACUUUc |||||| aguauccuacaaguuCUGAAAc 2 8 731 752 [mm9:11:121217599-121217620:-] 0.7197 120 6 -8.92 -0.1310 MIMAT0000137 mmu-miR-126-5p 217371 Rab40b gcGCAUGGUUUUCAUUAUUac | | :::|:| |||||| uaCAUUUUGAGAUUAAUAAgu 3 20 666 686 [mm9:11:121217665-121217685:-] 0.7197 135 0 -3.65 -0.2798 MIMAT0004533 mmu-miR-141* 217371 Rab40b agGUUGUGACGUGACCUUCUac ::| ||| |: |||||| ucUGAAACU--AUGGGAAGAaa 3 21 745 764 [mm9:11:121217587-121217606:-] 0.7197 129 0 -11.40 -0.1347 MIMAT0000240 mmu-miR-207 217371 Rab40b cucccuccucucggUCCUCUUCg |||||||| agguauuucaguaaAGGAGAAGu 2 10 831 853 [mm9:11:121217498-121217520:-] 0.4424 145 7 -16.87 -0.9376 MIMAT0000249 mmu-miR-30e* 217371 Rab40b cgacauuuguaggcuGACUUUc |||||| aguauccuacaaguuCUGAAAc 2 8 731 752 [mm9:11:121217599-121217620:-] 0.7197 120 6 -8.92 -0.1310 MIMAT0000367 mmu-miR-291a-5p 217371 Rab40b ucucucccGGAGGUGA-AACUAc :|||:||| ||||| aguauucuUCUCUACUCUUGAUa 2 15 351 373 [mm9:11:121217978-121218000:-] 0.5464 126 0 -13.64 -1.2014 MIMAT0004573 mmu-miR-293* 217371 Rab40b guuuuAC-AGUG-UGUCAAACUCa || |:|| ||| |||||| uauguUGUUUACUACAUUUUGAGa 2 18 654 677 [mm9:11:121217674-121217697:-] 0.7197 131 6 -12.29 -0.4899 MIMAT0004574 mmu-miR-294* 217371 Rab40b ucuaucccgGAGGUAAAACUCa || ||||||||| uguuguuuaCUACAUUUUGAGa 2 14 656 677 [mm9:11:121217674-121217695:-] 0.7197 157 7 -13.18 -1.3121 MIMAT0004574 mmu-miR-294* 217371 Rab40b ucuaucccggaGGUAAAACUCa | |||||||| gccagcgugggCAAUUUUGAGa 2 12 104 125 [mm9:11:121218226-121218247:-] 0.4931 147 7 -17.09 -0.3211 MIMAT0004575 mmu-miR-295* 217371 Rab40b cuucACACGGGGUGU-AAACUCa ||| : |:||| |||||| auguUGUUUACUACAUUUUGAGa 2 19 655 677 [mm9:11:121217674-121217696:-] 0.7197 130 6 -13.99 -1.3174 MIMAT0000375 mmu-miR-297a 217371 Rab40b ugUACGUGUACGUGUGUAUGUa || : : ||:| || |||| auAUUUUUCUGUAAACCUACAu 2 21 698 719 [mm9:11:121217632-121217653:-] 0.7197 124 0 -7.24 -0.1284 MIMAT0000377 mmu-miR-299* 217371 Rab40b uacauacacccuGCCAUUUGGu | ||||||| auucauauuuuuCUGUAAACCu 2 11 694 715 [mm9:11:121217636-121217657:-] 0.7197 142 7 -7.71 -1.2893 MIMAT0004622 mmu-let-7c-1* 217371 Rab40b ccUUUCGAUCU-UCCAACAUGUc ||| ||| | | ||||||| guAAACCUACAUAUUUUGUACAa 2 21 708 730 [mm9:11:121217621-121217643:-] 0.7197 159 7 -6.52 -1.3206 MIMAT0004625 mmu-miR-16* 217371 Rab40b agucguCGUGUCAGUUAUG-ACc |:::||| ||||| || aaauguGUGUAGUGAAUACAUGu 2 17 450 472 [mm9:11:121217879-121217901:-] 0.5029 124 0 -12.28 -0.5036 MIMAT0005440 mmu-miR-24-2* 217371 Rab40b ugACAAAGUCGAGUCAUCC-GUg ||| || :| :||||| || ucUGUCCCAUUUGGGUAGGACAu 2 21 611 633 [mm9:11:121217718-121217740:-] 0.6338 124 0 -18.27 -0.2268 MIMAT0004631 mmu-miR-29a* 217371 Rab40b gacUUGUGGUUUUCUUUAGUCa |: | ||| : |||||| uucAGAAGCAAUGAUAAUCAGa 2 20 483 504 [mm9:11:121217847-121217868:-] 0.5029 123 6 -10.71 -0.1015 MIMAT0000556 mmu-miR-324-3p 217371 Rab40b ucGUCGUGGACC-CCGUCACc | | | :||| ||||||| ggCUGGAAUUGGUGGCAGUGg 2 19 2 22 [mm9:11:121218329-121218349:-] 0.5475 153 7 -27.03 -0.2772 MIMAT0004640 mmu-miR-325 217371 Rab40b aacuauccuCCACGAGUUAUUu | | |||||||| aaggacuauGUUUCUCAAUAAa 2 14 868 889 [mm9:11:121217462-121217483:-] 0.6296 149 7 -13.29 -0.9866 MIMAT0004666 mmu-miR-33* 217371 Rab40b caCUACGUGACACCUUUGUAAc |: || :| || ||||||| gaGGGGCCUUUUGUAAACAUUu 2 21 530 551 [mm9:11:121217800-121217821:-] 0.5479 160 7 -10.18 -0.9328 MIMAT0003387 mmu-miR-376a* 217371 Rab40b ugaguaucUUCCUC-UUAGAUGg || || ||||||: uugagauuAAUAAGUAAUCUAUa 2 15 672 694 [mm9:11:121217657-121217679:-] 0.7197 129 0 -8.28 -0.4695 MIMAT0000745 mmu-miR-380-3p 217371 Rab40b uucUACACCUGGUAUGAUGUAu |||| | : |||||||| gcuAUGUUG--UUUACUACAUu 2 20 652 671 [mm9:11:121217680-121217699:-] 0.7197 152 7 -11.64 -1.2770 MIMAT0000745 mmu-miR-380-3p 217371 Rab40b uucuacaccugguauGAUGUAu |||||| uauuuuucuguaaacCUACAUa 2 8 699 720 [mm9:11:121217631-121217652:-] 0.7197 120 6 -7.89 -0.6205 MIMAT0002105 mmu-miR-464 217371 Rab40b auaGAGUGUCUUAUUUGAAC-CAu ||| :: ||:||||| || aagCUCUUGUUCUAGACUUGUGUg 2 21 309 332 [mm9:11:121218019-121218042:-] 0.5464 120 0 -14.72 -0.5183 MIMAT0005295 mmu-miR-376c* 217371 Rab40b auUUGUAU-CUUCCU-UAUAGGUg || ||: || || || |||| agAAAAUGCCAAAGAUAUCUCCAa 2 21 760 783 [mm9:11:121217568-121217591:-] 0.7197 122 0 -6.74 -0.1048 MIMAT0004789 mmu-miR-450a-3p 217371 Rab40b uacUUACGUUUCGUAGGGGUUa ||||: || | |||||| uuuAAUGUCAA--AGCCCCAAc 2 20 550 569 [mm9:11:121217782-121217801:-] 0.5479 128 6 -16.00 -0.1638 MIMAT0003189 mmu-miR-291b-5p 217371 Rab40b ccucucccGGAGGUGA-AACUAg :|||:||| ||||| aguauucuUCUCUACUCUUGAUa 2 15 351 373 [mm9:11:121217978-121218000:-] 0.5464 126 0 -14.64 -1.2014 MIMAT0004822 mmu-miR-770-5p 217371 Rab40b gcACCGGGUCUGUGCAC-CACGa || :|:|||| :||| |||| cuUGUUCUAGACUUGUGUGUGCa 2 21 314 336 [mm9:11:121218015-121218037:-] 0.5464 136 0 -22.26 -0.8268 MIMAT0003459 mmu-miR-682 217371 Rab40b gucUGAAGUGACACUGAC-GUc | | |:||||||||| || cccAGUGCGCUGUGACUGACAc 2 19 268 289 [mm9:11:121218062-121218083:-] 0.4837 134 0 -24.28 -0.2301 MIMAT0003464 mmu-miR-686 217371 Rab40b agAAGUGGC---AGACCCUUCGUUa |||| | |:| ||||||| ugUUCAAGGAAAUUUCAGAAGCAAu 2 21 470 494 [mm9:11:121217857-121217881:-] 0.5029 147 7 -11.50 -0.9388 MIMAT0003480 mmu-miR-297b-5p 217371 Rab40b ugUACAAGUACGUGUGUAUGUa || ||: ||:| || |||| auAUUUUUCUGUAAACCUACAu 2 21 698 719 [mm9:11:121217632-121217653:-] 0.7197 136 0 -9.31 -0.1246 MIMAT0003487 mmu-miR-697 217371 Rab40b agagguguccugguCCUACAa |||||| uaauaugaaauuauGGAUGUg 2 8 372 392 [mm9:11:121217959-121217979:-] 0.5497 120 6 -9.05 -0.1389 MIMAT0003496 mmu-miR-706 217371 Rab40b aaAAAACUCUGUCCCAAAGAGa ||| :||| ||||||| uaUUUAAGGACUAUGUUUCUCa 2 21 863 884 [mm9:11:121217467-121217488:-] 0.6296 156 7 -12.03 -1.2246 MIMAT0003500 mmu-miR-710 217371 Rab40b gagUUGAGAG-GGGUUCUGAACc |:||||: ::| ||||||| ugaAGCUCUUGUUCUAGACUUGu 2 20 307 329 [mm9:11:121218022-121218044:-] 0.5464 162 7 -18.93 -0.5455 MIMAT0004839 mmu-miR-743b-5p 217371 Rab40b acuaccuGUGGUC-AGACUUgu :|| || |||||| aguauccUACAAGUUCUGAAac 3 15 731 752 [mm9:11:121217599-121217620:-] 0.7197 129 0 -9.70 -0.1074 MIMAT0004841 mmu-miR-871 217371 Rab40b guacugaccGUGAUU-AGACUUau :|| |: |||||| aaaguauccUACAAGUUCUGAAac 3 15 729 752 [mm9:11:121217599-121217622:-] 0.7197 125 0 -7.13 -0.1095 MIMAT0004845 mmu-miR-881* 217371 Rab40b ucuaCACUGACAAUAGA-GAGAc || |:| || ||| |||| auuaGU-AUUCUUCUCUACUCUu 2 19 348 369 [mm9:11:121217982-121218003:-] 0.5464 120 0 -7.00 -1.0125 MIMAT0004848 mmu-miR-883a-5p 217371 Rab40b caUUGACGAUGAAGAGAGUCGu |:: || | ||||||| gcAGUGGCCUGUAAUCUCAGCu 2 21 16 37 [mm9:11:121218314-121218335:-] 0.4413 144 7 -16.63 -0.2212 MIMAT0004849 mmu-miR-883a-3p 217371 Rab40b uaugACUCUCGACAACGUCAAu | | | || ||||||| cuuaUAAAAAAUGCUGCAGUUu 2 19 569 590 [mm9:11:121217761-121217782:-] 0.5479 150 7 -10.21 -0.4225 MIMAT0004851 mmu-miR-883b-3p 217371 Rab40b uaugACUCUCUACAACGUCAAu | | | ||| ||||||| cuuaUAAAAAAUGCUGCAGUUu 2 19 569 590 [mm9:11:121217761-121217782:-] 0.5479 158 7 -11.36 -0.4225 MIMAT0004863 mmu-miR-220 217371 Rab40b uuCACAGACUGUG-----ACACC-ACc ||| ||||||| ||||| || cuGUGACUGACACUUUUGUGUGGAUGu 2 20 277 303 [mm9:11:121218048-121218074:-] 0.4837 126 0 -24.06 -0.1304 MIMAT0004865 mmu-miR-297c 217371 Rab40b ugUACAUGUACGUGUGUAUGUa || | : ||:| || |||| auAUUUUUCUGUAAACCUACAu 2 21 698 719 [mm9:11:121217632-121217653:-] 0.7197 128 0 -7.24 -0.1271 MIMAT0004883 mmu-miR-466g 217371 Rab40b acacacacGUACACAGACAUa :|| | |||||| uauauucaUAUUUUUCUGUAa 2 14 691 711 [mm9:11:121217640-121217660:-] 0.7197 121 6 -6.16 -0.5427 MIMAT0004892 mmu-miR-568 217371 Rab40b cacacAUAUGU-AAAUAUGUa || |:| |||:|||| aaaccUACAUAUUUUGUACAa 2 16 710 730 [mm9:11:121217621-121217641:-] 0.7197 138 0 -7.02 -0.1181 MIMAT0004933 mmu-miR-878-3p 217371 Rab40b agauggguCACACC-ACA-GUACg |||||| ||| |||| acacuuuuGUGUGGAUGUGCAUGa 2 15 286 309 [mm9:11:121218042-121218065:-] 0.5464 125 0 -20.80 -0.4376 MIMAT0004934 mmu-miR-872 217371 Rab40b ggACU-UGAUUGUUCAUUGGAa ||| |:|||:||||||:|| uuUGAGAUUAAUAAGUAAUCUa 2 20 671 692 [mm9:11:121217659-121217680:-] 0.7197 162 0 -19.97 -0.1301 MIMAT0004938 mmu-miR-875-3p 217371 Rab40b guAUCGGAGUCAU-AAAAGUCc || :||| || ||||| | ucUAUAUUCA-UAUUUUUCUGu 2 20 689 709 [mm9:11:121217642-121217662:-] 0.7197 120 0 -6.56 -0.1588 MIMAT0005292 mmu-miR-582-3p 217371 Rab40b aacccaaGUC--AAC-AAGUUGUCc ||| ||| |||||||| acaaagcCAGCAUUGUUUCAACAGa 2 16 793 817 [mm9:11:121217534-121217558:-] 0.4424 153 7 -13.77 -0.7895 MIMAT0005831 mmu-miR-669k 217371 Rab40b aacguacgcACAUAUACGUAu | ||||| ||| aauaaguaaUCUAUAUUCAUa 2 13 680 700 [mm9:11:121217651-121217671:-] 0.7197 120 0 -4.51 -0.2004 MIMAT0005834 mmu-miR-466i 217371 Rab40b aucacacauacacACACACAUa |||||||| auggcugauaaaaUGUGUGUAg 2 10 440 461 [mm9:11:121217890-121217911:-] 0.5029 145 7 -10.40 -0.7964 MIMAT0005836 mmu-miR-1186 217371 Rab40b guaCGGAAAUUAAGGUCG-UGAg |||| |||| :|||| ||| gugGCCUGUAAUCUCAGCUACUc 2 20 19 41 [mm9:11:121218310-121218332:-] 0.4413 139 0 -23.06 -0.1096 MIMAT0005842 mmu-miR-669h-3p 217371 Rab40b acacGUACA-CACAUAUACGUAu :| || | ||||| ||| uuaaUAAGUAAUCUAUAUUCAUa 2 19 678 700 [mm9:11:121217651-121217673:-] 0.7197 121 0 -4.86 -0.1967 MIMAT0005852 mmu-miR-1194 217371 Rab40b ucCUAGAUCGUCAAUGA-GUAAg | | |: :: ||||| |||| uuGCUAUGUUGUUUACUACAUUu 2 21 650 672 [mm9:11:121217679-121217701:-] 0.7197 120 0 -9.86 -1.2406 MIMAT0007872 mmu-miR-1906 217371 Rab40b ucgggacggaguccgACGACGu |||||| ccaacuuauaaaaaaUGCUGCa 2 8 565 586 [mm9:11:121217765-121217786:-] 0.5479 120 6 -15.33 -0.1228 MIMAT0007876 mmu-miR-1907 217371 Rab40b uggagGUCUAGGAGACGACGAg |:| | ||||||| auuaaCGGUAACGAUGCUGCUu 2 18 215 236 [mm9:11:121218115-121218136:-] 0.4141 141 7 -17.70 -0.1342 MIMAT0009405 mmu-miR-1941-5p 217371 Rab40b uucggagacAUGG--UC-GUAGAGGga |:|| || :|||||| ggaagaaaaUGCCAAAGAUAUCUCCaa 3 16 757 783 [mm9:11:121217568-121217594:-] 0.7197 125 0 -15.84 -0.3014 MIMAT0011222 mmu-miR-2146 217371 Rab40b guguaccuugggaAGAGGUg |||||| aaugccaaagauaUCUCCAa 2 8 764 783 [mm9:11:121217568-121217587:-] 0.7197 120 6 -9.57 -0.3304 MIMAT0012771 mmu-miR-432 217371 Rab40b gacgGGUGACUAGAUGAGGUUcu ||| ||| | |||||| aaugCCAAAGAUAU-CUCCAAuu 3 20 764 785 [mm9:11:121217566-121217587:-] 0.7197 137 0 -16.15 -0.1237 MIMAT0015641 mmu-miR-3470b 217371 Rab40b ggucGGACCAGAUGUCUCACu :|| |||||||||| cccaUCUAAGCUACAGAGUGa 2 18 76 96 [mm9:11:121218255-121218275:-] 0.4944 157 7 -26.04 -0.6202 MIMAT0000124 mmu-miR-15b 217371 Rab40b acAUUUGGUACUAC-ACGACGAu | ||| :| | | ||||||| uaUUAACGGUAACGAUGCUGCUu 2 21 214 236 [mm9:11:121218115-121218137:-] 0.4141 155 7 -12.28 -0.1329 MIMAT0000125 mmu-miR-23b 217371 Rab40b ccaUUAGGGACCGUUACACUa || :: || :|||||| augAAAUUAUG--GAUGUGAc 2 19 376 394 [mm9:11:121217957-121217975:-] 0.5497 127 6 -9.91 -0.1067 MIMAT0000128 mmu-miR-30a 217371 Rab40b gaaggucaGCUCCUACAAAUGu | | | ||||||| aguuuuugCUAUGUUGUUUACu 2 15 645 666 [mm9:11:121217685-121217706:-] 0.7197 146 7 -7.63 -1.2518 MIMAT0000130 mmu-miR-30b 217371 Rab40b ucgacucAC-AUCCUACAAAUGu || || | ||||||| aaguuuuUGCUAUGUUGUUUACu 2 16 644 666 [mm9:11:121217685-121217707:-] 0.7197 150 7 -8.29 -1.2507 MIMAT0000138 mmu-miR-126-3p 217371 Rab40b gcGUAAUAAUGAGUGCCA-UGCu ||| |||:| ||||| ||| ugCAU--UUAUUAACGGUAACGa 2 21 208 228 [mm9:11:121218123-121218143:-] 0.4071 129 0 -20.87 -0.3942 MIMAT0000142 mmu-miR-9 217371 Rab40b aguAUGUCGAUCUAU--UGGUUUCu ||::| ||| | :|||||| aacUAUGGGAAGAAAAUGCCAAAGa 2 21 750 774 [mm9:11:121217577-121217601:-] 0.7197 139 6 -14.26 -0.4250 MIMAT0000149 mmu-miR-137 217371 Rab40b gaugcgcauAAGAAUUCGUUAUu ||| |||||||: caaggaaauUUCAGAAGCAAUGa 2 15 474 496 [mm9:11:121217855-121217877:-] 0.5029 138 0 -11.79 -0.1089 MIMAT0000158 mmu-miR-146a 217371 Rab40b uuggguaccuuaagUCAAGAgu |||||| caaaguauccuacaAGUUCUga 3 9 728 749 [mm9:11:121217602-121217623:-] 0.7197 120 0 -9.86 -0.1870 MIMAT0000165 mmu-miR-155 217371 Rab40b uggggaUAG--UGUUA-AUCGUAAUu ||| |:||| |||||||| augauaAUCAGAUAAUCUAGCAUUAc 2 18 493 518 [mm9:11:121217833-121217858:-] 0.5029 159 7 -10.93 -0.7138 MIMAT0000211 mmu-miR-182 217371 Rab40b gccacacucaagaugguaACGGUUu |||||| gaaacuaugggaagaaaaUGCCAAa 2 8 748 772 [mm9:11:121217579-121217603:-] 0.7197 120 6 -12.55 -0.1389 MIMAT0000220 mmu-miR-190 217371 Rab40b ugGAUUAUAUAGUUUGUAUAGu || :|| | | ||||||: uuCU-GUA-AACCUACAUAUUu 2 21 704 723 [mm9:11:121217628-121217647:-] 0.7197 128 0 -7.99 -0.1060 MIMAT0000225 mmu-miR-195 217371 Rab40b cgguuauaaagacACGACGAu ||||||| uuaacgguaacgaUGCUGCUu 2 9 216 236 [mm9:11:121218115-121218135:-] 0.4141 140 7 -14.58 -0.1342 MIMAT0000237 mmu-miR-204 217371 Rab40b uccguAUCCUAC-UGUUUCCCUu | | :|| :|||||||| uagacUUGUGUGUGCAAAGGGAa 2 18 321 343 [mm9:11:121218008-121218030:-] 0.5464 152 7 -16.86 -0.7310 MIMAT0000248 mmu-miR-30e 217371 Rab40b gaaggucaGUUCCUACAAAUGu | | | ||||||| aguuuuugCUAUGUUGUUUACu 2 15 645 666 [mm9:11:121217685-121217706:-] 0.7197 146 7 -7.15 -1.2507 MIMAT0000366 mmu-miR-290-5p 217371 Rab40b uuucACGGG-GGUAUCAAACUCa ||::: |:| | |||||| auguUGUUUACUACAUUUUGAGa 2 19 655 677 [mm9:11:121217674-121217696:-] 0.7197 125 6 -8.83 -0.4968 MIMAT0000369 mmu-miR-292-5p 217371 Rab40b guuuucucgGGGGUCAAACUCa |: || |||||| uguuguuuaCUACAUUUUGAGa 2 14 656 677 [mm9:11:121217674-121217695:-] 0.7197 121 6 -8.48 -0.4968 MIMAT0004577 mmu-miR-299 217371 Rab40b uucgccAAAUGGCA---GGGUGUAu ||| |:|| ||:|||| ucauauUUUUCUGUAAACCUACAUa 2 17 696 720 [mm9:11:121217631-121217655:-] 0.7197 135 0 -16.93 -0.2360 MIMAT0000385 mmu-miR-106a 217371 Rab40b gauGGACGUGACAAU-CG-UGAAAc | || |:||||: || ||||| uauCAUG-AUUGUUGUGCAACUUUu 2 21 399 422 [mm9:11:121217929-121217952:-] 0.5530 125 0 -14.59 -0.6895 MIMAT0000514 mmu-miR-30c 217371 Rab40b cgacucucAC-AUCCUACAAAUGu || || | ||||||| aaaguuuuUGCUAUGUUGUUUACu 2 16 643 666 [mm9:11:121217685-121217708:-] 0.7197 150 7 -6.69 -1.2507 MIMAT0000515 mmu-miR-30d 217371 Rab40b gaaggucagcccCUACAAAUGu | ||||||| aguuuuugcuauGUUGUUUACu 2 11 645 666 [mm9:11:121217685-121217706:-] 0.7197 142 7 -7.25 -1.2518 MIMAT0000526 mmu-miR-15a 217371 Rab40b guguUUGGUAAUAC-ACGACGAu ||| :| | | ||||||| uauuAACGGUAACGAUGCUGCUu 2 19 214 236 [mm9:11:121218115-121218137:-] 0.4141 153 7 -13.54 -0.1329 MIMAT0000527 mmu-miR-16 217371 Rab40b gcGGUUAUAAAUGC-ACGACGAu ::|| : | ||| ||||||| uaUUAACGGUAACGAUGCUGCUu 2 21 214 236 [mm9:11:121218115-121218137:-] 0.4141 155 7 -18.35 -0.1342 MIMAT0000532 mmu-miR-23a 217371 Rab40b ccUUUAGGGACCGUUACACUa |||| : || :|||||| ugAAAU-UAUG--GAUGUGAc 2 20 377 394 [mm9:11:121217957-121217974:-] 0.5497 130 6 -13.40 -0.1067 MIMAT0000541 mmu-miR-96 217371 Rab40b ucguuuuuacacgaucACGGUUu |||||| aacuaugggaagaaaaUGCCAAa 2 8 750 772 [mm9:11:121217579-121217601:-] 0.7197 120 6 -11.21 -0.1376 MIMAT0000546 mmu-miR-103 217371 Rab40b aguaucgggacaUGUUACGACGa | |||||||| cccaacuuauaaAAAAUGCUGCa 2 12 564 586 [mm9:11:121217765-121217787:-] 0.5479 147 7 -13.14 -1.2118 MIMAT0000548 mmu-miR-322 217371 Rab40b agguuUUGUACUU--AACGACGAc |||: || ||||||| uuauuAACGGUAACGAUGCUGCUu 2 18 213 236 [mm9:11:121218115-121218138:-] 0.4141 144 7 -12.65 -0.1356 MIMAT0000582 mmu-miR-338-3p 217371 Rab40b guuguuuUAGUGACUACGACcu || | |||||| ccaacuuAUAAAAAAUGCUGca 3 16 565 586 [mm9:11:121217765-121217786:-] 0.5479 123 0 -10.12 -0.1039 MIMAT0000647 mmu-miR-107 217371 Rab40b acuaucgggacaUGUUACGACGa | |||||||| cccaacuuauaaAAAAUGCUGCa 2 12 564 586 [mm9:11:121217765-121217787:-] 0.5479 147 7 -13.14 -1.2118 MIMAT0000662 mmu-miR-216a 217371 Rab40b agugucaacggucGACUCUAAu :||||||| uguuuacuacauuUUGAGAUUa 2 10 659 680 [mm9:11:121217671-121217692:-] 0.7197 141 7 -11.25 -1.3309 MIMAT0000668 mmu-miR-211 217371 Rab40b uccguuuCCUAC-UGUUUCCCUu | :|| :|||||||| uagacuuGUGUGUGCAAAGGGAa 2 16 321 343 [mm9:11:121218008-121218030:-] 0.5464 150 7 -16.86 -0.7347 MIMAT0000671 mmu-miR-224 217371 Rab40b uuGCCUUGGUGAU--CACUGAAu :| ||::|: : ||||||| uaUGAAAUUAUGGAUGUGACUUu 2 20 375 397 [mm9:11:121217954-121217976:-] 0.5497 146 7 -14.95 -1.1055 MIMAT0000678 mmu-miR-7b 217371 Rab40b uguuguuuuagUGUUCAGA-AGGu |||:|||| ||| gguuguguacaACAGGUCUGUCCc 2 13 595 618 [mm9:11:121217733-121217756:-] 0.6338 120 0 -14.16 -0.5696 MIMAT0000704 mmu-miR-361 217371 Rab40b cauggggaccucuaaGACUAUu |||||| acugcuuuuauauggCUGAUAa 2 8 429 450 [mm9:11:121217901-121217922:-] 0.5279 120 6 -11.80 -0.1199 MIMAT0004684 mmu-miR-362-3p 217371 Rab40b acuuaggAACUUGUCC-ACACAa || ||||| ||||| gcugcagUUUCACAGGUUGUGUa 2 16 581 603 [mm9:11:121217748-121217770:-] 0.5479 123 0 -13.23 -0.4591 MIMAT0000766 mmu-miR-335-5p 217371 Rab40b uguaAAAAGCAAUAACGAGAACu | | | | | ||||||| uggaUGUGCAUGA-AGCUCUUGu 2 20 297 318 [mm9:11:121218033-121218054:-] 0.5464 141 7 -11.77 -0.6634 MIMAT0000766 mmu-miR-335-5p 217371 Rab40b ugUAAAAAGCAAUA-ACGAGAACu | | ||| || | | |||||| uuAGUAUUC-UUCUCUACUCUUGa 2 22 349 371 [mm9:11:121217980-121218002:-] 0.5464 126 6 -11.05 -0.2474 MIMAT0004745 mmu-miR-384-5p 217371 Rab40b uguAACGGAUCCUUAACAAAUGu ||| ||| | |||||||| uuuUUG-CUAUG--UUGUUUACu 2 21 647 666 [mm9:11:121217685-121217704:-] 0.7197 155 7 -11.12 -1.2471 MIMAT0004747 mmu-miR-411 217371 Rab40b gcAUGCGAUAUGCCAGAUGAu | :|||||:: ||:|||| uuUUUGCUAUGUUGUUUACUa 2 20 647 667 [mm9:11:121217684-121217704:-] 0.7197 151 0 -18.99 -0.1118 MIMAT0004747 mmu-miR-411 217371 Rab40b gcaugcgauaugccAGAUGAu |||||| aauuaguauucuucUCUACUc 2 8 347 367 [mm9:11:121217984-121218004:-] 0.5464 120 6 -8.19 -0.1003 MIMAT0001420 mmu-miR-433 217371 Rab40b uguggcuccucGGGUAGUACUa :::||||||| ggaugugacuuUUUAUCAUGAu 2 12 386 407 [mm9:11:121217944-121217965:-] 0.5530 143 7 -13.35 -1.0534 MIMAT0003169 mmu-miR-539 217371 Rab40b uguguGGUUCCU-AU-UAAAGAGg ::||||| || :|||||| guuauUUAAGGACUAUGUUUCUCa 2 18 861 884 [mm9:11:121217467-121217490:-] 0.6296 143 6 -15.09 -0.1837 MIMAT0003182 mmu-miR-494 217371 Rab40b cuccAAAGGGCACAUACAAAGu ||| | |||||||| guuaUUUAAGGACUAUGUUUCu 2 19 861 882 [mm9:11:121217469-121217490:-] 0.6296 150 7 -9.18 -0.8917 MIMAT0003183 mmu-miR-376c 217371 Rab40b ugcACUUUAAAGGAGAUACAa | ||:|||:: |||||| ugaUAAAGUUUUUGCUAUGUu 2 19 639 659 [mm9:11:121217692-121217712:-] 0.7197 138 6 -12.17 -0.2027 MIMAT0003729 mmu-miR-216b 217371 Rab40b aguguaaacggacguCUCUAAa |||||| uguuuacuacauuuuGAGAUUa 2 8 659 680 [mm9:11:121217671-121217692:-] 0.7197 120 6 -8.49 -0.5765 MIMAT0003453 mmu-miR-497 217371 Rab40b auguUUGGUGUCAC-ACGACGAc ||| ::| | ||||||| uauuAACGGUAACGAUGCUGCUu 2 19 214 236 [mm9:11:121218115-121218137:-] 0.4141 149 7 -15.31 -0.1342 MIMAT0003475 mmu-miR-146b 217371 Rab40b ucggauaccuuaagUCAAGAgu |||||| caaaguauccuacaAGUUCUga 3 9 728 749 [mm9:11:121217602-121217623:-] 0.7197 120 0 -10.03 -0.1870 MIMAT0004852 mmu-miR-190b 217371 Rab40b uuGGGUUAUAGUUUGUAUAGu :|:: | | ||||||: uuUCUGUAAACCUACAUAUUu 2 20 703 723 [mm9:11:121217628-121217648:-] 0.7197 127 0 -7.66 -0.1071 MIMAT0004869 mmu-miR-421 217371 Rab40b cgcggguuaauuacagACAACUa |||||| aagauaucuccaauuaUGUUGAa 2 8 771 793 [mm9:11:121217558-121217580:-] 0.7197 120 6 -12.72 -0.1803 MIMAT0004937 mmu-miR-875-5p 217371 Rab40b guggacuaUUUUGACUCCAUAu |::| ||||||| gauuagcaAGGAGAGAGGUAUu 2 15 816 837 [mm9:11:121217514-121217535:-] 0.4424 146 7 -10.85 -0.6473 MIMAT0004941 mmu-miR-544 217371 Rab40b cucGAACG-AUUUUUACGU-CUUa :|||: |::| :|||| ||| acuUUUGUGUGGAUGUGCAUGAAg 2 20 288 311 [mm9:11:121218040-121218063:-] 0.5464 122 0 -10.85 -0.2427 MIMAT0004943 mmu-miR-653 217371 Rab40b gucaucUC-UAACAAAGUUGUg || |||||||||||| aaagccAGCAUUGUUUCAACAg 2 16 795 816 [mm9:11:121217535-121217556:-] 0.4424 166 7 -15.98 -0.3391

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G070198 Rab40b Mus musculus 217371 19536157 0 0 R44918; MOUSE$RAB40B_01; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1906 , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p , mmu-miR-761

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rab40b mmu-miR-204 beg:325 end:344 pic:3' TCCGTATCCTAC-TGTTTCCCTT 5'& | || .||||||||| &5' -------GTGTGTGCAAAGGGAA 3' Rab40b mmu-miR-211 beg:325 end:344 pic:3' TCCGTTTCCTAC-TGTTTCCCTT 5'& | || .||||||||| &5' -------GTGTGTGCAAAGGGAA 3' Rab40b mmu-miR-103 beg:219 end:236 pic:3' AGTATCGGGACA-TGTTACGACGA 5'& || ||.|||||||| &5' ----------GTAACGATGCTGCT 3' Rab40b mmu-miR-107 beg:219 end:236 pic:3' ACTATCGGGACA-TGTTACGACGA 5'& || ||.|||||||| &5' ----------GTAACGATGCTGCT 3' Rab40b mmu-miR-34a beg:237 end:256 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& . | | ||||||| &5' ----TTGGAAT-GCCACTGCC- 3' Rab40b mmu-miR-34c beg:237 end:256 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& | | .| ||||||| &5' ----TTGGAATGC--CACTGCC- 3' Rab40b mmu-miR-449c beg:237 end:256 pic:3' GGTCGATCGTTAC-GTGACGGA 5'& .|.| |||| ||||||| &5' ----TTGG-AATGCCACTGCC- 3' Rab40b mmu-miR-34b-5p beg:241 end:256 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||| ||||||| &5' ----------AATGCCACTGCC- 3' Rab40b mmu-miR-875-5p beg:827 end:837 pic:3' GTGGACTATTTTGACTCCATAT 5'& ||||||| &5' --------------GAGGTAT- 3' Rab40b mmu-miR-335-5p beg:308 end:318 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||||||| &5' ---------------GCTCTTG- 3' Rab40b mcmv-miR-m108-2-5p.1 beg:263 end:286 pic:3' GCCACGAG-CGCAGCT-CACTGGCG 5'& ||| |.| || |||||.| &5' ---TGCCCAGTG-CGCTGTGACTG- 3' Rab40b mghv-miR-M1-6 beg:572 end:592 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& |||| .|. .|||||||| &5' AAAAATGCT----GCAGTTTCA 3' Rab40b mmu-let-7c-2star beg:282 end:300 pic:3' CCTTTCTGTCATCTAACATATC 5'& |||| ||||.|.| &5' -----GACACTT--TTGTGTGG 3' Rab40b mmu-let-7gstar beg:12 end:29 pic:3' CGTTCCGTCACCGGACATGTCA 5'& |||||||||||||| &5' ----GGCAGTGGCCTGTA---- 3' Rab40b mmu-miR-103 beg:566 end:586 pic:3' AGTATCGGGACATG--TTACGACGA 5'& |.| || |||||||| &5' -------CTTATAAAAAATGCTGC- 3' Rab40b mmu-miR-107 beg:566 end:586 pic:3' ACTATCGGGACATG--TTACGACGA 5'& |.| || |||||||| &5' -------CTTATAAAAAATGCTGC- 3' Rab40b mmu-miR-1186 beg:796 end:807 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||||||.| &5' -------------CCAGCATT- 3' Rab40b mmu-miR-1186b beg:13 end:35 pic:3' CACCACGTA--CGGAAATTAGGGT 5'& ||| |||| |||||.|| &5' -----GCAGTGGCCTGTAATCTCA 3' Rab40b mmu-miR-1196 beg:42 end:63 pic:3' TCCGTCTCCGTCCATCTAAA 5'& |||| |||||||| .||| &5' AGGCTGAGGCAGGAGGAT-- 3' Rab40b mmu-miR-124star beg:451 end:469 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& || .|. |||||.|| &5' ------GTGTGTAGTGAATAC- 3' Rab40b mmu-miR-128 beg:266 end:283 pic:3' TTTCTCTGGCCAAGTGACACT 5'& || || |.|||||| &5' -------CCAGTGCGCTGTGA 3' Rab40b mmu-miR-129-5p beg:62 end:86 pic:3' CGTTCGGG-TCTGGCGTTT-TTC 5'& |||||.| ||.|| || ||| &5' -CAAGCTCAAGGCC-CATCTAAG 3' Rab40b mmu-miR-129-5p beg:306 end:342 pic:3' CGTTCG-------GGTCTGG-------CGTTTTTC 5'& |||| |.||||. |||||..| &5' --AAGCTCTTGTTCTAGACTTGTGTGTGCAAAGGG 3' Rab40b mmu-miR-130bstar beg:816 end:833 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& .|.|| |||.|||| &5' -------TAGCAAGGAGAGAG- 3' Rab40b mmu-miR-132 beg:389 end:413 pic:3' GCTGGTACCGACATCTGACAAT 5'& |||. ||.||||. &5' -GACTTTTTATCATGATTGTTG 3' Rab40b mmu-miR-137 beg:475 end:497 pic:3' GATGCGCATAAGAATTCGTTATT 5'& | ||| |||||||.| &5' ----GAAATTTCAGAAGCAATGA 3' Rab40b mmu-miR-150 beg:147 end:167 pic:3' GTGACCATGTTCCCAACCCTCT 5'& .|||| | ||||||| &5' -GCTGGCTCTC----TGGGAGA 3' Rab40b mmu-miR-152 beg:269 end:280 pic:3' GGTTCAAGACAGTACGTGACT 5'& .|||.||| &5' ------------GTGCGCTG- 3' Rab40b mmu-miR-155 beg:496 end:518 pic:3' TGGGGATAGT--GTTA-ATCGTAATT 5'& |||| .||| |||||||| &5' ------ATCAGATAATCTAGCATTA- 3' Rab40b mmu-miR-15astar beg:9 end:27 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& || ||| .||||||| &5' ---GGTGGCA----GTGGCCTG 3' Rab40b mmu-miR-16 beg:217 end:236 pic:3' GCGGTTATAAATGC-ACGACGAT 5'& |..|| ||| ||||||| &5' ---CGGTA---ACGATGCTGCT- 3' Rab40b mmu-miR-181a beg:284 end:304 pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& |||. |.| ||.|||| &5' ---CACTTTT-GTG-TGGATGT- 3' Rab40b mmu-miR-181d beg:284 end:304 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& |||. .||.|||| &5' ---CACTTTTGT--GTGGATGT- 3' Rab40b mmu-miR-1904 beg:33 end:59 pic:3' GGAGGGAGGTCTCC----TCGTCTTG 5'& || ||| ||||| .||||.| &5' -CTA-CTCAAGAGGCTGAGGCAGGA- 3' Rab40b mmu-miR-1929 beg:308 end:325 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||||| ||.||||| &5' ----GCTCTT----GTTCTAGA- 3' Rab40b mmu-miR-1934 beg:40 end:65 pic:3' TCTCCTGCTTCGTCC-CCTGGTCT 5'& ||||| .||.||||| |||.|| &5' AGAGGCTGAGGCAGGAGGATCA-- 3' Rab40b mmu-miR-195 beg:217 end:236 pic:3' CGGTTATAAAGACACGACGAT 5'& |..|| | ||||||| &5' --CGGTAA--CGATGCTGCT- 3' Rab40b mmu-miR-1957 beg:240 end:254 pic:3' CAGTATACGAGATGGTGAC 5'& | |.|||||| &5' -------GAA-TGCCACTG 3' Rab40b mmu-miR-19astar beg:325 end:352 pic:3' CAT-CACGTTGATACG--TTTTGAT 5'& ||. |||||| | ||||.|| &5' GTGTGTGCAAAGG-GAAAAAAATTA 3' Rab40b mmu-miR-200astar beg:796 end:819 pic:3' AGGTCGTGACAGGCCATTCTAC 5'& ||||||.|||.. |||| &5' -CCAGCATTGTTTCAACAGAT- 3' Rab40b mmu-miR-203 beg:531 end:554 pic:3' GATCACCAGGA-----TTTGTAAAGTG 5'& .| || ||| ||||||||.| &5' --GG-GG-CCTTTTGTAAACATTTTA- 3' Rab40b mmu-miR-207 beg:829 end:854 pic:3' CTCCCTCCTCTCGG-TCCTCTTCG 5'& |||| ||. ||||||||. &5' GAGGTATTTCAGTAAAGGAGAAGT 3' Rab40b mmu-miR-20a beg:532 end:554 pic:3' GATGGACGTGATATTCGTGAAAT 5'& .||| .|.||| ||.|||| &5' --GCCTT--TTGTAAACATTTTA 3' Rab40b mmu-miR-20bstar beg:576 end:589 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |..||||||| &5' ------------ATGCTGCAGT 3' Rab40b mmu-miR-2135 beg:175 end:186 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& .||||||.| &5' -----------GAGACCTTT 3' Rab40b mmu-miR-2140 beg:198 end:215 pic:3' TGGTGGTTCTAGACGTGGA 5'& || ||||||..| &5' -----CATGTTCTGCATTT 3' Rab40b mmu-miR-2141 beg:697 end:718 pic:3' TTGAAAAGACTG-TGGAGGA 5'& |.||||||| |||| | &5' -ATTTTTCTGTAAACCTAC- 3' Rab40b mmu-miR-223 beg:270 end:289 pic:3' ACCCCATAAAC-TGT--TTGACTGT 5'& || .| .||||||| &5' ---------TGCGCTGTGACTGACA 3' Rab40b mmu-miR-224 beg:375 end:397 pic:3' TTGCCTTGGTGAT--CACTGAAT 5'& |.| ||..|. ||||||| &5' -ATGAAATTATGGATGTGACTT- 3' Rab40b mmu-miR-24 beg:228 end:251 pic:3' GAC-AAGGACGACTTGACTCGGT 5'& ||| ||||| .||.| |||| &5' CTGCTTCCT-TTGGAAT--GCCA 3' Rab40b mmu-miR-27a beg:268 end:283 pic:3' CGCCTTGAATCG-GTGACACTT 5'& ||. |.|||||| &5' ---------AGTGCGCTGTGA- 3' Rab40b mmu-miR-294 beg:518 end:541 pic:3' TGTG-TGTTTTCCCTTCGTGAAA 5'& |.|| ||||.|||| || |||| &5' ATACTACAAGAGGG--GC-CTTT 3' Rab40b mmu-miR-294star beg:662 end:677 pic:3' TCTATCCCGGAGGTAAAACTCA 5'& || ||||||||| &5' ---------CTACATTTTGAG- 3' Rab40b mmu-miR-296-5p beg:529 end:539 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||||||.| &5' -------------GGGGCCTT 3' Rab40b mmu-miR-302a beg:190 end:216 pic:3' AGTGGTTTTGTACCTT-CGTGAAT 5'& ||. ..|||||| |||.||| &5' TCGA-GGAACATGTTCTGCATTTA 3' Rab40b mmu-miR-324-3p beg:0 end:23 pic:3' TCGTCGTGGACC-CCGTCACC 5'& .|| | | .||| |||||||| &5' GGCTGGAATTGGTGGCAGTGG 3' Rab40b mmu-miR-325 beg:827 end:846 pic:3' AACTATCCTCCAC-GAGTTATTT 5'& ||||| .|||.|||| &5' -------GAGGTATTTCAGTAAA 3' Rab40b mmu-miR-3470a beg:74 end:97 pic:3' GGTCGGACCAGATGTTTCACT 5'& ||| .|| |||||.||||| &5' CCA-TCTAAGCTACAGAGTGA 3' Rab40b mmu-miR-3470b beg:74 end:97 pic:3' GGTCGGACCAGATGTCTCACT 5'& ||| .|| ||||||||||| &5' CCA-TCTAAGCTACAGAGTGA 3' Rab40b mmu-miR-361 beg:627 end:645 pic:3' CATGGGGACCTCTAAGACTATT 5'& || |||| |.|||||| &5' --ACA--TGGA---TTTGATAA 3' Rab40b mmu-miR-377 beg:286 end:300 pic:3' TGTTTTCAACGGAAACACACTA 5'& |.||||||||. &5' ----------CTTTTGTGTGG- 3' Rab40b mmu-miR-384-5p beg:647 end:666 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||||. .|||||||| &5' ---TTGCTAT---GTTGTTTAC- 3' Rab40b mmu-miR-449a beg:234 end:256 pic:3' TGGTCGATTGTTAT-GTGACGGT 5'& || . |||. ||||||| &5' -CCTTT--GGAATGCCACTGCC- 3' Rab40b mmu-miR-449b beg:237 end:256 pic:3' CGGTCGATTGTTGTGACGGA 5'& . | .| ||||||| &5' -TTGGAATGC--CACTGCC- 3' Rab40b mmu-miR-450a-3p beg:763 end:785 pic:3' TACTTAC-GTTTC-GTAGGGGTTA 5'& |||| ||||| .|||.||||| &5' ---AATGCCAAAGATATCTCCAAT 3' Rab40b mmu-miR-452 beg:692 end:714 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& .||| ||..||||.|||| &5' --TTCATATTTTTCTGTAAAC- 3' Rab40b mmu-miR-452 beg:528 end:549 pic:3' CAGAGTCAAAGG-AGACGTTTGT 5'& || || |.||.||||| &5' -----AGGGGCCTTTTGTAAACA 3' Rab40b mmu-miR-469 beg:819 end:836 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& ||| ||.|||||.| &5' ------------CAAGGAGAGAGGTA 3' Rab40b mmu-miR-470 beg:465 end:480 pic:3' TGAGTGGTCACGGT-CAGGTTCTT 5'& || ||.||||.| &5' ------------CATGTTCAAGGA 3' Rab40b mmu-miR-471 beg:636 end:659 pic:3' CACT-TTTCGTGATATGATGCAT 5'& ||| ||||. |.|||.|| &5' -TGATAAAGTTTT-TGCTATGT- 3' Rab40b mmu-miR-488 beg:187 end:212 pic:3' CTG-GTTCTTTGT-CGGAAAGTT 5'& ||| |.||.|||| |. | || &5' GACTCGAGGAACATGTTCTGCA- 3' Rab40b mmu-miR-493 beg:166 end:186 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||| | |||| ||||||. &5' -CTGA-AGACAGA--GACCTTT- 3' Rab40b mmu-miR-497 beg:216 end:236 pic:3' ATGTTTGGTGTCA---C-ACGACGAC 5'& ||.|| | ||||||| &5' --------ACGGTAACGATGCTGCT- 3' Rab40b mmu-miR-539 beg:863 end:884 pic:3' TGTGTGGTTCCTAT--TAAAGAGG 5'& ..||||| .|||||| &5' -----TTAAGGACTATGTTTCTC- 3' Rab40b mmu-miR-544 beg:40 end:59 pic:3' CTCGAACGATTTTTACGTCTTA 5'& || |||.| ||||.| &5' -AGAG-GCTGAG---GCAGGA- 3' Rab40b mmu-miR-574-3p beg:290 end:313 pic:3' ACAC-CCACACACGTAC-TCGCAC 5'& |||| || |||||||| ||| &5' TGTGTGGA-TGTGCATGAAGC--- 3' Rab40b mmu-miR-582-3p beg:797 end:817 pic:3' AACCCAAGTC--AAC-AAGTTGTCC 5'& ||| ||| |||||||| &5' -------CAGCATTGTTTCAACAG- 3' Rab40b mmu-miR-669h-3p beg:290 end:309 pic:3' ACACGTACACACATATACGTAT 5'& |||||| ||.|||||. &5' ------TGTGTGGATGTGCATG 3' Rab40b mmu-miR-669j beg:288 end:307 pic:3' ACAAACGTACACTCATATACGT 5'& ||||..|| ||.|||| &5' --TTTGTGTGG----ATGTGCA 3' Rab40b mmu-miR-669j beg:312 end:337 pic:3' ACAAACGTACACT---CATATACGT 5'& |||. || ||.|.|||| &5' ---TTGTTCTAGACTTGTGTGTGCA 3' Rab40b mmu-miR-669k beg:290 end:309 pic:3' AACGTACGCACATATACGTAT 5'& ||.||| ||.|||||. &5' -----TGTGTGGATGTGCATG 3' Rab40b mmu-miR-669m beg:288 end:305 pic:3' TATACAAACACACCTACATATA 5'& |||||||||||||. &5' -----TTTGTGTGGATGTG--- 3' Rab40b mmu-miR-677 beg:506 end:522 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& |||. |||.||||| &5' -------CTAG-CATTACTGA- 3' Rab40b mmu-miR-692 beg:823 end:851 pic:3' CTCACTCCGC-GAGT----TTCTCTA 5'& ||| ||||. .||| |.|||| &5' GAGAGAGGTATTTCAGTAAAGGAGA- 3' Rab40b mmu-miR-704 beg:192 end:207 pic:3' GATCCTCGTCTCG-TGTACAGA 5'& ||| ||||||. &5' ---------GAGGAACATGTT- 3' Rab40b mmu-miR-706 beg:862 end:884 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& ||| .||| ||||||| &5' --TTTAAGGACTATGTTTCTC- 3' Rab40b mmu-miR-770-3p beg:64 end:81 pic:3' GGTCGAGGTGCAGTCCGGGTGC 5'& ||||| |||||||. &5' --AGCTCA-----AGGCCCAT- 3' Rab40b mmu-miR-877 beg:349 end:366 pic:3' GGGACGCGGTAGAGGAGATG 5'& |. |||.|||||| &5' ------GTATTCTTCTCTAC 3' Rab40b mmu-miR-877star beg:41 end:63 pic:3' ACCCTCCTCCCTCT--TCTCCTGT 5'& |||| |||. .|||||. &5' ---GAGGCT-GAGGCAGGAGGAT- 3' Rab40b mmu-miR-883a-3p beg:577 end:590 pic:3' TATGACTCTCGACAACGTCAAT 5'& || ||||||| &5' -----------TGCTGCAGTT- 3' Rab40b mmu-miR-883a-5p beg:16 end:37 pic:3' CATT-GACGATGAAGAGAGTCGT 5'& ||.. |||. ||||||| &5' GTGGCCTGTAA----TCTCAGC- 3' Rab40b mmu-miR-883b-3p beg:576 end:590 pic:3' TATGACTCTCTACAACGTCAAT 5'& ||| ||||||| &5' ----------ATGCTGCAGTT- 3' Rab40b mmu-miR-9 beg:757 end:775 pic:3' AGTATGTCGATCTAT--TGGTTTCT 5'& ||| .||||||| &5' ----------AGAAAATGCCAAAGA 3' Rab40b mmu-miR-92astar beg:123 end:134 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& |.|||||| &5' --------------CTCCACCT 3' Rab40b mmu-miR-653 beg:798 end:816 pic:3' GTCATCTC-TAACAAAGTTGTG 5'& || |||||||||||| &5' ------AGCATTGTTTCAACA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rab40b RAID00526751 mmu-miR-204-5p miRNA MIMAT0000237 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID00575228 mmu-miR-299a-5p miRNA MIMAT0000377 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID00694479 mmu-miR-706 miRNA MIMAT0003496 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID00955742 mmu-miR-16-5p miRNA MIMAT0000527 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID01014649 mmu-miR-544-3p miRNA MIMAT0004941 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01096135 mmu-miR-190b-5p miRNA MIMAT0004852 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01110069 mmu-miR-23b-3p miRNA MIMAT0000125 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01128628 mmu-miR-669c-3p miRNA MIMAT0017253 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01336402 mmu-miR-30d-5p miRNA MIMAT0000515 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01350878 mmu-miR-539-5p miRNA MIMAT0003169 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01366339 mmu-miR-380-3p miRNA MIMAT0000745 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01386896 mmu-miR-290a-5p miRNA MIMAT0000366 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01399298 mmu-miR-23a-3p miRNA MIMAT0000532 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01437284 mmu-miR-146a-5p miRNA MIMAT0000158 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01443588 mmu-miR-3074-2-3p miRNA MIMAT0014946 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01468730 mmu-miR-137-3p miRNA MIMAT0000149 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01559632 mmu-miR-411-5p miRNA MIMAT0004747 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01582250 mmu-miR-146b-5p miRNA MIMAT0003475 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01634082 mmu-miR-653-5p miRNA MIMAT0004943 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01653173 mmu-miR-466q miRNA MIMAT0020631 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01672780 mmu-miR-433-3p miRNA MIMAT0001420 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID01746621 mmu-miR-6353 miRNA MIMAT0025096 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01747885 mmu-miR-5626-3p miRNA MIMAT0022382 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01901203 mmu-miR-96-3p miRNA MIMAT0017021 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID01935443 mmu-miR-103-3p miRNA MIMAT0000546 Rab40b mRNA 217371 CLIP-seq//Prediction 0.6478 Rab40b RAID01981450 mmu-miR-30a-5p miRNA MIMAT0000128 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02015131 mmu-miR-1907 miRNA MIMAT0007876 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02130094 mmu-miR-6950-3p miRNA MIMAT0027801 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02140772 mmu-miR-6342 miRNA MIMAT0025085 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02208741 mmu-miR-190a-5p miRNA MIMAT0000220 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02210233 mmu-miR-195a-5p miRNA MIMAT0000225 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID02232230 mmu-miR-294-5p miRNA MIMAT0004574 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02254920 mmu-miR-96-5p miRNA MIMAT0000541 Rab40b mRNA 217371 Prediction 0.2381 Rab40b RAID02293805 mmu-miR-9-5p miRNA MIMAT0000142 Rab40b mRNA 217371 Prediction 0.2381 Rab40b RAID02312447 mmu-miR-182-5p miRNA MIMAT0000211 Rab40b mRNA 217371 Prediction 0.2381 Rab40b RAID02321107 mmu-miR-106a-5p miRNA MIMAT0000385 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02327172 mmu-miR-30c-5p miRNA MIMAT0000514 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02355881 mmu-miR-7b-5p miRNA MIMAT0000678 Rab40b mRNA 217371 CLIP-seq//Prediction 0.6308 Rab40b RAID02406125 mmu-miR-216b-5p miRNA MIMAT0003729 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02471193 mmu-miR-211-5p miRNA MIMAT0000668 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02504252 mmu-miR-216a-5p miRNA MIMAT0000662 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID02564841 mmu-let-7c-1-3p miRNA MIMAT0004622 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02594918 mmu-miR-384-5p miRNA MIMAT0004745 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02710584 mmu-miR-3475-5p miRNA MIMAT0026642 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02785600 mmu-miR-155-3p miRNA MIMAT0016993 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02882976 mmu-miR-224-5p miRNA MIMAT0000671 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02906551 mmu-miR-362-3p miRNA MIMAT0004684 Rab40b mRNA 217371 CLIP-seq//Prediction 0.6308 Rab40b RAID02906918 mmu-miR-126a-3p miRNA MIMAT0000138 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02911963 mmu-miR-497a-5p miRNA MIMAT0003453 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID02915590 mmu-miR-669e-3p miRNA MIMAT0017330 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02932680 mmu-miR-6402 miRNA MIMAT0025154 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID02940211 mmu-miR-6419 miRNA MIMAT0025175 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID03238983 mmu-miR-292a-5p miRNA MIMAT0000369 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03275619 mmu-miR-6982-3p miRNA MIMAT0027867 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03308118 mmu-miR-195b miRNA MIMAT0025076 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03312952 mmu-miR-335-5p miRNA MIMAT0000766 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03335964 mmu-miR-361-5p miRNA MIMAT0000704 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03346219 mmu-miR-292b-5p miRNA MIMAT0029864 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03471873 mmu-miR-299a-3p miRNA MIMAT0004577 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03493961 mmu-miR-7231-3p miRNA MIMAT0028431 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03504741 mmu-miR-875-5p miRNA MIMAT0004937 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03514652 mmu-miR-7670-3p miRNA MIMAT0029847 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03515863 mmu-miR-15a-5p miRNA MIMAT0000526 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID03554046 mmu-miR-338-3p miRNA MIMAT0000582 Rab40b mRNA 217371 CLIP-seq//Prediction 0.6308 Rab40b RAID03608731 mmu-miR-421-3p miRNA MIMAT0004869 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03675829 mmu-miR-6987-5p miRNA MIMAT0027876 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03700529 mmu-miR-155-5p miRNA MIMAT0000165 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03841770 mmu-miR-15b-5p miRNA MIMAT0000124 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID03917010 mmu-miR-107-3p miRNA MIMAT0000647 Rab40b mRNA 217371 CLIP-seq//Prediction 0.6559 Rab40b RAID03918741 mmu-miR-322-5p miRNA MIMAT0000548 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID03937696 mmu-miR-30e-5p miRNA MIMAT0000248 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID03984020 mmu-miR-494-3p miRNA MIMAT0003182 Rab40b mRNA 217371 Prediction 0.2202 Rab40b RAID03994432 mmu-miR-376c-3p miRNA MIMAT0003183 Rab40b mRNA 217371 Prediction 0.1828 Rab40b RAID04012761 mmu-miR-30b-5p miRNA MIMAT0000130 Rab40b mRNA 217371 Prediction 0.1828