DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0009397 mmu-miR-1933-3p 71972 Dnmbp uaUCAGUGUGACUACCAGGACc |||| || || ||||||| ucAGUCCGACGGAAGGUCCUGg 2 21 36 57 [mm9:19:43922526-43922547:-] 0.5647 168 7 -26.90 -0.1136 MIMAT0000381 mmu-miR-34c 71972 Dnmbp cguuagucgauUGAUGUGACGGa || |||||||| agcagggacccACCACACUGCCu 2 13 81 103 [mm9:19:43922480-43922502:-] 0.5775 152 7 -21.24 -0.8414 MIMAT0000382 mmu-miR-34b-5p 71972 Dnmbp uguuagucgauuaaUGUGACGGa |||||||| agcagggacccaccACACUGCCu 2 10 81 103 [mm9:19:43922480-43922502:-] 0.5775 145 7 -19.29 -0.8414 MIMAT0000542 mmu-miR-34a 71972 Dnmbp uguuggUCGAUUCUGUGACGGu | | | |||||||| gcagggACCCACCACACUGCCu 2 17 82 103 [mm9:19:43922480-43922501:-] 0.5775 148 7 -17.07 -0.8414 MIMAT0001542 mmu-miR-449a 71972 Dnmbp ugGUCGAU-UGUUAUGUGACGGu ||| | || |||||||| agCAGGGACCCACCACACUGCCu 2 21 81 103 [mm9:19:43922480-43922502:-] 0.5775 151 7 -18.34 -0.8378 MIMAT0003460 mmu-miR-449c 71972 Dnmbp ggucgaucGUUACGUGACGGa || ||||||| cagggaccCACCACACUGCCu 2 14 83 103 [mm9:19:43922480-43922500:-] 0.5775 141 7 -17.36 -0.8378 MIMAT0005447 mmu-miR-449b 71972 Dnmbp cggucgauUGUUGUGACGGa || |||||||| agggacccACCACACUGCCu 2 13 84 103 [mm9:19:43922480-43922499:-] 0.5775 152 7 -17.76 -0.8414

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G052138 Dnmbp Mus musculus 71972 19536157 0 0 R49015; MOUSE$DNMBP_01; Binding factors: mmu-miR-125a-5p , mmu-miR-125b-5p , mmu-miR-351-5p // 0 0 R49039; MOUSE$DNMBP_02; Binding factors: mmu-miR-125a-5p , mmu-miR-125b-5p , mmu-miR-351-5p // 0 0 R49040; MOUSE$DNMBP_03; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-672-5p , mmu-miR-98-5p // 0 0 R49041; MOUSE$DNMBP_04; Binding factors: mmu-miR-128-3p , mmu-miR-27a-3p , mmu-miR-27b-3p // 0 0 R49042; MOUSE$DNMBP_05; Binding factors: mmu-miR-1897-5p , mmu-miR-9-5p // 0 0 R49044; MOUSE$DNMBP_06; Binding factors: mmu-miR-125a-5p , mmu-miR-125b-5p , mmu-miR-351-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Dnmbp mmu-miR-34a beg:84 end:103 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .||| |||||||| &5' --GACCCACC---ACACTGCC- 3' Dnmbp mmu-miR-34c beg:89 end:104 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || ||||||||| &5' -----------ACCACACTGCCT 3' Dnmbp mmu-miR-449b beg:89 end:104 pic:3' CGGTCGATTGTTGTGACGGA 5'& || ||||||||| &5' --------ACCACACTGCCT 3' Dnmbp mmu-miR-34b-5p beg:92 end:104 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||||||||| &5' --------------ACACTGCCT 3' Dnmbp mmu-miR-449c beg:93 end:104 pic:3' GGTCGATCGTTACGTGACGGA 5'& |||||||| &5' -------------CACTGCCT 3' Dnmbp mmu-let-7e beg:5 end:26 pic:3' TTGATATGTT-GGA-GGATGGAGT 5'& |.| || |||.|||. &5' -----TGCCTCCCGCCCTGCCTT- 3' Dnmbp mmu-miR-1929 beg:42 end:59 pic:3' GAGACGAGATATTTCAGGATCTT 5'& | ||.|||||.||. &5' -------CGG-AAGGTCCTGGAG 3' Dnmbp mmu-miR-1933-3p beg:35 end:58 pic:3' TATCAGTGTGA-CTACCAGGACC 5'& |||| |. || |||||||| &5' --AGTC-CGACGGAAGGTCCTGG 3' Dnmbp mmu-miR-196a beg:86 end:105 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ||| || || |||.|||| &5' CCC-ACCAC-----ACTGCCTA 3' Dnmbp mmu-miR-196b beg:86 end:105 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& ||| || || |||.|||| &5' CCC-ACCAC-----ACTGCCTA 3' Dnmbp mmu-miR-2145 beg:6 end:29 pic:3' TTGGTC--CGGGCTGGGACGA 5'& .|| |||| .||.|||| &5' -GCCTCCCGCCCTGCCTTGCT 3' Dnmbp mmu-miR-2861 beg:7 end:32 pic:3' GGCGGGCGG--CGGTCCGG-GG 5'& || |||||| ||| ||. || &5' CCTCCCGCCCTGCCTTGCTGCC 3' Dnmbp mmu-miR-34a beg:13 end:32 pic:3' TGTTGGT-CGATTCTGTGACGGT 5'& .|| || ..||||| &5' ---GCCCTGCCT---TGCTGCC- 3' Dnmbp mmu-miR-449a beg:92 end:103 pic:3' TGGTCGATTGTTATGTGACGGT 5'& |||||||| &5' -------------ACACTGCC- 3' Dnmbp mmu-miR-449b beg:6 end:32 pic:3' CGGT---CGAT-TGTTGTGACGGA 5'& ||| || .| ..||||| &5' GCCTCCCGCCCTGCCTTGCTGCC- 3' Dnmbp mmu-miR-709 beg:7 end:26 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||| ||| ||||||. &5' -CCTCCCGCC-CTGCCTT- 3' Dnmbp mmu-miR-744 beg:3 end:28 pic:3' ACGACAAT---CGGGATCGGGGCGT 5'& |.|| ||||| |||..|| &5' -GTTGCCTCCCGCCCT-GCCTTGC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Dnmbp RAID00101485 mmu-miR-1896 miRNA MIMAT0007873 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00181625 mmu-miR-34b-5p miRNA MIMAT0000382 Dnmbp mRNA 71972 Prediction 0.2202 Dnmbp RAID00236516 mmu-miR-486a-3p miRNA MIMAT0017206 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00327412 mmu-miR-1188-5p miRNA MIMAT0005843 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00366378 mmu-miR-6939-5p miRNA MIMAT0027778 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00403080 mmu-miR-423-5p miRNA MIMAT0004825 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00446040 mmu-miR-34a-5p miRNA MIMAT0000542 Dnmbp mRNA 71972 Prediction 0.2202 Dnmbp RAID00467621 mmu-miR-3473e miRNA MIMAT0025587 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00494384 mmu-miR-7677-5p miRNA MIMAT0029868 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00675311 mmu-miR-7069-5p miRNA MIMAT0028044 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00724042 mmu-miR-6976-5p miRNA MIMAT0027854 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID00762389 mmu-miR-449c-5p miRNA MIMAT0003460 Dnmbp mRNA 71972 Prediction 0.2202 Dnmbp RAID00764390 mmu-miR-140-3p miRNA MIMAT0000152 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01020003 mmu-miR-7243-3p miRNA MIMAT0029911 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01062252 mmu-miR-6902-5p miRNA MIMAT0027704 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01241879 mmu-miR-1948-3p miRNA MIMAT0009415 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01357441 mmu-miR-7239-3p miRNA MIMAT0028447 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01384608 mmu-miR-7017-5p miRNA MIMAT0027938 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01596464 mmu-miR-3099-5p miRNA MIMAT0014815 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01623065 mmu-miR-7017-3p miRNA MIMAT0027939 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01694577 mmu-miR-30f miRNA MIMAT0025179 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01769769 mmu-miR-6954-5p miRNA MIMAT0027808 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01818893 mmu-miR-449b miRNA MIMAT0005447 Dnmbp mRNA 71972 Prediction 0.2202 Dnmbp RAID01836040 mmu-miR-301b-5p miRNA MIMAT0017232 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01878794 mmu-miR-7665-5p miRNA MIMAT0029836 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID01960809 mmu-miR-3069-5p miRNA MIMAT0014844 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02148264 mmu-miR-3083-5p miRNA MIMAT0014874 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02225483 mmu-miR-486b-3p miRNA MIMAT0014944 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02235516 mmu-miR-326-5p miRNA MIMAT0017027 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02341546 mmu-miR-6953-5p miRNA MIMAT0027806 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02406847 mmu-miR-7074-5p miRNA MIMAT0028054 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02477091 mmu-miR-615-5p miRNA MIMAT0004837 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02485501 mmu-miR-709 miRNA MIMAT0003499 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02561876 mmu-miR-34c-5p miRNA MIMAT0000381 Dnmbp mRNA 71972 Prediction 0.2202 Dnmbp RAID02586278 mmu-miR-760-3p miRNA MIMAT0003898 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02726521 mmu-miR-6921-5p miRNA MIMAT0027742 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02869843 mmu-miR-449a-5p miRNA MIMAT0001542 Dnmbp mRNA 71972 Prediction 0.2202 Dnmbp RAID02959143 mmu-miR-7118-5p miRNA MIMAT0028133 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID02962307 mmu-miR-471-3p miRNA MIMAT0017195 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID03018661 mmu-miR-181d-3p miRNA MIMAT0017264 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID03092628 mmu-miR-7022-5p miRNA MIMAT0027948 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID03418504 mmu-miR-664-5p miRNA MIMAT0017353 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID03551089 mmu-miR-340-5p miRNA MIMAT0004651 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID03708065 mmu-miR-3473b miRNA MIMAT0020367 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID03855995 mmu-miR-5118 miRNA MIMAT0020626 Dnmbp mRNA 71972 Prediction 0.1828 Dnmbp RAID04010530 mmu-miR-7051-5p miRNA MIMAT0028006 Dnmbp mRNA 71972 Prediction 0.1828