DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Usp16 ATTTA 129-2606 2727-2731;2731-2735;2751-2755 Usp16 TTATTTATT 129-2606 2725-2733 Usp16 WTATTTATW 129-2606 2725-2733 Usp16 WWATTTAWW 129-2606 2725-2733;2729-2737 Usp16 WWTATTTATWW 129-2606 2724-2734 Usp16 WWWATTTAWWW 129-2606 2724-2734;2728-2738 Usp16 WWWWATTTAWWWW 129-2606 2727-2739

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004526 mmu-miR-101a* 74112 Usp16 cguaGUCGUGACA--CUAUUGACu ||| :| | ||||||| gagcCAGAUUUUUAAAAUAACUGa 2 19 293 316 [mm9:16:87470999-87471022:+] 0.5006 141 7 -11.46 -1.1329 MIMAT0004573 mmu-miR-293* 74112 Usp16 guuuuaCAGUGUGUCAA-ACUCa ||: : ||||| |||| gucuuaGUUUUCCAGUUCUGAGa 2 17 255 277 [mm9:16:87470961-87470983:+] 0.5006 120 0 -11.37 -0.4252 MIMAT0004574 mmu-miR-294* 74112 Usp16 ucuauccCGGAGGUAA-AACUCa ||:|::||| ||||| acuuuacGCUUUUAUUCUUGAGa 2 16 5 27 [mm9:16:87470711-87470733:+] 0.5139 127 0 -13.00 -0.1259 MIMAT0004575 mmu-miR-295* 74112 Usp16 cuucACACGGGGUGUAAA-CUCa || |||::: |||| ||| aggcUG-GCCUUGAAUUUAGAGa 2 19 74 95 [mm9:16:87470780-87470801:+] 0.5006 120 0 -13.88 -0.3934 MIMAT0004620 mmu-let-7a* 74112 Usp16 ccuUUCUGUCAUCUAAC-AUAUc ||||::|| ||| |||| uacAAGAUGGUUUCUUGCUAUAg 2 20 170 192 [mm9:16:87470876-87470898:+] 0.5006 127 0 -12.99 -0.1446 MIMAT0005439 mmu-let-7c-2* 74112 Usp16 ccuUUCUGUCAUCUAAC-AUAUc ||||::|| ||| |||| uacAAGAUGGUUUCUUGCUAUAg 2 20 170 192 [mm9:16:87470876-87470898:+] 0.5006 127 0 -12.99 -0.1446 MIMAT0004625 mmu-miR-16* 74112 Usp16 agucgucgugucaguUAUGACc |||||| acaccuauggcuuuuAUACUGg 2 8 27 48 [mm9:16:87483503-87483524:+] 0.5722 120 6 -11.68 -0.1081 MIMAT0004625 mmu-miR-16* 74112 Usp16 agucgucgugucaguUAUGACc |||||| cgguuuuguauuagcAUACUGg 2 8 153 174 [mm9:16:87483629-87483650:+] 0.5466 120 6 -16.17 -0.1127 MIMAT0004631 mmu-miR-29a* 74112 Usp16 gacUUGUGGUUUUCUUUAGUca :||| |||| |||||| aauGACA-GAAAAAAAAUCAug 3 20 97 117 [mm9:16:87483573-87483593:+] 0.5453 141 0 -9.42 -0.2409 MIMAT0000549 mmu-miR-322* 74112 Usp16 cacaacgucgcgaAGUACAAa ||||||| gacagaaaaaaaaUCAUGUUu 2 9 100 120 [mm9:16:87483576-87483596:+] 0.5459 140 7 -10.74 -1.2751 MIMAT0004640 mmu-miR-325 74112 Usp16 aaCUAUCCUCCAC---G-AGUUAUUu |:||| : || | ||||||| guGGUAGUGCUUGACACAUCAAUAAa 2 21 244 269 [mm9:16:87483720-87483745:+] 0.5437 142 7 -13.58 -0.8873 MIMAT0004640 mmu-miR-325 74112 Usp16 aacuauccuccacgaGUUAUUu |||||| uacuggcuauuauaaCAAUAAa 2 8 43 64 [mm9:16:87483519-87483540:+] 0.5632 120 6 -5.50 -0.3405 MIMAT0004640 mmu-miR-325 74112 Usp16 aacuauccuccacGAGUUAUuu :|||||| cacguguacauauUUCAAUAua 3 10 459 480 [mm9:16:87471165-87471186:+] 0.4924 121 0 -4.70 -0.1121 MIMAT0000586 mmu-miR-340-3p 74112 Usp16 cgauauuucauugaCUCUGCCu ||||||| gcuuuuauucuugaGAGACGGu 2 9 12 33 [mm9:16:87470718-87470739:+] 0.4685 140 7 -14.72 -0.2654 MIMAT0004656 mmu-miR-345-3p 74112 Usp16 caGAGGUCUGGGGAUCAAGUCc || | || : : ||||||| gcCUGCUGA-UGUAAGUUCAGu 2 21 358 378 [mm9:16:87471064-87471084:+] 0.5006 146 7 -14.81 -0.3009 MIMAT0004660 mmu-miR-19a* 74112 Usp16 caUCACGUUGAUACGUUUUGau | | ||| ||| |||||| auAUUUCAA-UAUACAAAACga 3 21 468 488 [mm9:16:87471174-87471194:+] 0.4924 142 0 -7.13 -0.1770 MIMAT0004664 mmu-miR-214* 74112 Usp16 cgugucguucacaucUGUCCGu |||||| uuuauuuauuuaaauACAGGCa 2 8 118 139 [mm9:16:87483594-87483615:+] 0.5466 120 6 -13.98 -0.5296 MIMAT0004665 mmu-miR-218-1* 74112 Usp16 ccacgaacugccUUGGUACAAa ||:|||||| ugacagaaaaaaAAUCAUGUUu 2 11 99 120 [mm9:16:87483575-87483596:+] 0.5459 134 6 -11.92 -0.3050 MIMAT0004760 mmu-miR-470* 74112 Usp16 agAAGAGUCUUUCCAUGACCAa ||: :| |: ||||||| guUUUGUAUUAGCAUACUGGUu 2 21 155 176 [mm9:16:87483631-87483652:+] 0.5466 148 7 -11.85 -1.0990 MIMAT0004760 mmu-miR-470* 74112 Usp16 agaagagucuuuccAUGACCaa |||||| accuauggcuuuuaUACUGGcu 3 9 29 50 [mm9:16:87483505-87483526:+] 0.5722 120 0 -9.84 -0.1305 MIMAT0002889 mmu-miR-532-5p 74112 Usp16 ugcCAGGA-UGUGAGUUCCGUAc || || : |:| ||||||| ugaGUACUGGGAUUAAAGGCAUg 2 20 113 135 [mm9:16:87470819-87470841:+] 0.5006 154 7 -18.35 -0.2251 MIMAT0003186 mmu-miR-369-3p 74112 Usp16 uuucuaguugguacAUAAUAa |||||| gcuuuuauacuggcUAUUAUa 2 8 36 56 [mm9:16:87483512-87483532:+] 0.5722 120 6 -1.92 -0.1135 MIMAT0003373 mmu-miR-302b* 74112 Usp16 ucUUUCGUAAGGGUACAAUUUca | | || | | |||||| uuAUAACAAUAAAAAGUUAAAcu 3 22 52 74 [mm9:16:87483528-87483550:+] 0.5065 129 0 -3.86 -0.2461 MIMAT0003373 mmu-miR-302b* 74112 Usp16 ucUUUCGUAAG-GGUA-CAAUUUCa |||| ||| |::| ||||||| agAAAGAUUUCUCUGUAGUUAAAGu 2 22 320 344 [mm9:16:87471026-87471050:+] 0.5006 163 7 -19.62 -0.5134 MIMAT0003375 mmu-miR-302c* 74112 Usp16 cguccaUUGGGGUACAAUUUcg ||: | |||||| uauaacAAUAAAAAGUUAAAcu 3 17 53 74 [mm9:16:87483529-87483550:+] 0.5065 124 0 -5.36 -0.2461 MIMAT0003375 mmu-miR-302c* 74112 Usp16 cgUCCAUUGGGGUA-CAAUUUCg || | |:|::| ||||||| aaAGAUUUCUCUGUAGUUAAAGu 2 21 322 344 [mm9:16:87471028-87471050:+] 0.5006 155 7 -12.88 -0.5134 MIMAT0014815 mmu-miR-3099* 74112 Usp16 guucccgacCUUCCUUCGACc |: |||||||| gaaucucacGGUGGAAGCUGa 2 13 385 405 [mm9:16:87471091-87471111:+] 0.5006 148 7 -16.63 -0.3137 MIMAT0003449 mmu-miR-488* 74112 Usp16 aacucucaCGAUAAUA-GACCc ||| |||| |||| caccuaugGCUUUUAUACUGGc 2 14 28 49 [mm9:16:87483504-87483525:+] 0.5722 121 0 -11.28 -1.1667 MIMAT0003476 mmu-miR-669b 74112 Usp16 uguacguguacGUGUGUUUUGa :|:||||||| acauauuucaaUAUACAAAACg 2 12 466 487 [mm9:16:87471172-87471193:+] 0.4924 147 7 -13.10 -0.6632 MIMAT0003498 mmu-miR-708* 74112 Usp16 gaucuucgagugucAGAUCAAc ||||||| ugguuuuuauuccuUCUAGUUu 2 9 172 193 [mm9:16:87483648-87483669:+] 0.4976 140 7 -8.93 -0.8479 MIMAT0003498 mmu-miR-708* 74112 Usp16 gaucUUCGAGUGUCAG-AUCAAc |:|| : | ||| ||||| uggcAGGCCUUCUGUCUUAGUUu 2 19 242 264 [mm9:16:87470948-87470970:+] 0.5006 122 0 -11.89 -0.3057 MIMAT0003512 mmu-miR-450b-3p 74112 Usp16 uacguacguuUUACAAGGGUUa :|| ||||||| ucaauaaacuGAUAUUCCCAA- 2 13 262 282 [mm9:16:87483738-87483758:+] 0.5437 148 7 -8.95 -1.2431 MIMAT0004237 mmu-miR-742 74112 Usp16 aaaugggucguaccACCGAAAg ||||||| uggaaauacaccuaUGGCUUUu 2 9 20 41 [mm9:16:87483496-87483517:+] 0.6767 140 7 -12.52 -1.1840 MIMAT0004890 mmu-miR-509-5p 74112 Usp16 uaCUAACGGUGUAAGAC-CUCAu | || ||| :||||| |||| uaGUUUUCCA-GUUCUGAGAGUa 2 21 259 280 [mm9:16:87470965-87470986:+] 0.5006 130 0 -18.22 -0.3842 MIMAT0004930 mmu-miR-466d-5p 74112 Usp16 guacaUGUACA-UG-CGUGU-GUGu || ||| || ||||| ||| uccacACUUGUCACAGCACAGCACg 2 18 438 462 [mm9:16:87471144-87471168:+] 0.5006 123 0 -16.35 -0.5194 MIMAT0004940 mmu-miR-511 74112 Usp16 acUCACGUCUC-GUUUUCCGUa ||| | |:| : ||||||| ugAGUACUGGGAUUAAAGGCAu 2 20 113 134 [mm9:16:87470819-87470840:+] 0.5006 154 7 -20.99 -0.3075 MIMAT0005830 mmu-miR-466l 74112 Usp16 uuauacacacGUAC--AUAAAUAu |||| ||||||| gaaaaaaaauCAUGUUUAUUUAUu 2 13 104 127 [mm9:16:87483580-87483603:+] 0.5459 147 7 -7.51 -1.2362 MIMAT0005832 mmu-miR-669g 74112 Usp16 uaGUACAGUUGUG---UAUG-UUACGu :|| ||||:|: | || ||||| caUAUUUCAAUAUACAAAACGAAUGCa 2 22 467 493 [mm9:16:87471173-87471199:+] 0.4924 124 0 -14.66 -1.0466 MIMAT0005847 mmu-miR-1190 74112 Usp16 cuGUCUCCCCUUGGAGUCG-ACu | || | | |||||||| || uuCUGA-GAGUACCUCAGCAUGc 2 21 270 291 [mm9:16:87470976-87470997:+] 0.5006 126 0 -20.04 -0.3234 MIMAT0007866 mmu-miR-1905 74112 Usp16 gauggcgcaccacccUGACCAc |||||| guuuuguauuagcauACUGGUu 2 8 155 176 [mm9:16:87483631-87483652:+] 0.5466 120 6 -9.08 -0.1180 MIMAT0007878 mmu-miR-1894-3p 74112 Usp16 gagggaagugggagAGGGAACg ||||||| cucuguaguuaaagUCCCUUGc 2 9 330 351 [mm9:16:87471036-87471057:+] 0.5006 140 7 -17.62 -0.2683 MIMAT0009395 mmu-miR-1932 74112 Usp16 ggCUGGAUCGCGACAGG-CGUUg ||: || | |||||| |||| acGAUAUACCUCUGUCCUGCAAu 2 21 37 59 [mm9:16:87470743-87470765:+] 0.5006 136 0 -22.43 -0.3121 MIMAT0009399 mmu-miR-1935 74112 Usp16 ucUCUAGGCGGUCGGAGACGGa ||| || |:: ||||||| agAGACCCACUG--CUCUGCCu 2 21 91 110 [mm9:16:87470797-87470816:+] 0.5006 153 7 -25.05 -0.3063 MIMAT0009412 mmu-miR-1946a 74112 Usp16 uuUUC-A-CACACGGUGGUGACGGG-CCGa ||| | || | :::|:|: |||| ||| acAAGAUGGUUUCUUGCUAUAGCCCUGGCu 2 26 171 200 [mm9:16:87470877-87470906:+] 0.5006 127 0 -23.24 -0.2632 MIMAT0012772 mmu-miR-599 74112 Usp16 caaACUAUU-UG-ACUGUGUu ||:||: :| ||||||| gggUGGUAGUGCUUGACACAu 2 17 242 262 [mm9:16:87483718-87483738:+] 0.5437 150 7 -16.28 -0.6800 MIMAT0012772 mmu-miR-599 74112 Usp16 caaacUAUUUGACUGUGUu :|||| ||||| | ccuaaGUAAA-UGACAGAa 2 15 89 106 [mm9:16:87483565-87483582:+] 0.5453 120 0 -8.50 -0.1951 MIMAT0015640 mmu-miR-3470a 74112 Usp16 ggucggaccagaugUUUCACu |||||| --------uaacaaAAAGUGc 2 8 1 13 [mm9:16:87483477-87483489:+] 0.6767 120 6 -7.12 -0.1189 MIMAT0015643 mmu-miR-3472 74112 Usp16 ccaagGAAGGUCGAAGACCGAUAAu |||::| | ||||||||| uauggCUUUUA--UACUGGCUAUUa 2 21 32 54 [mm9:16:87483508-87483530:+] 0.5722 161 7 -19.17 -1.2808 MIMAT0000128 mmu-miR-30a 74112 Usp16 gaaggucagcuccUACAAAUGu |||||||: cagaaaaaaaaucAUGUUUAUu 2 10 102 123 [mm9:16:87483578-87483599:+] 0.5459 129 0 -6.22 -0.1569 MIMAT0000130 mmu-miR-30b 74112 Usp16 ucgacucacauccUACAAAUGu |||||||: cagaaaaaaaaucAUGUUUAUu 2 10 102 123 [mm9:16:87483578-87483599:+] 0.5459 129 0 -5.48 -0.1554 MIMAT0004528 mmu-miR-125a-3p 74112 Usp16 ccGAGGGUUCUUG-GAGUGGAca || : || |: :|||||| aaCUAUAAAUUAUGUUCACCUaa 3 21 71 93 [mm9:16:87483547-87483569:+] 0.5453 127 0 -11.80 -0.2824 MIMAT0000156 mmu-miR-144 74112 Usp16 ucAUGUAGUAGAUAUGACau ||:: | |:||||||| ccUAUGGCUUUUAUACUGgc 3 19 30 49 [mm9:16:87483506-87483525:+] 0.5722 142 0 -9.74 -0.1366 MIMAT0000159 mmu-miR-149 74112 Usp16 cccucACUUCUGUGCCUCGGUCu | |: |::| ||||||| guaccUCAGCAUGCUGAGCCAGa 2 19 278 300 [mm9:16:87470984-87471006:+] 0.5006 154 7 -18.82 -1.0802 MIMAT0000164 mmu-miR-154 74112 Usp16 gcUUCCGUUGUGCCUAU-UGGAu | ||: ||| |||| |||| agACGGUCUCAC-GAUAUACCUc 2 21 27 48 [mm9:16:87470733-87470754:+] 0.4873 122 0 -16.49 -0.2871 MIMAT0000209 mmu-miR-129-5p 74112 Usp16 cgUUCGGGUCUGGCGUUUUuc || : ||| |||||| uuAAAUACAG---GCAAAAua 3 20 127 144 [mm9:16:87483603-87483620:+] 0.5466 123 0 -6.29 -0.1699 MIMAT0000219 mmu-miR-24 74112 Usp16 gaCAAGGACGACUU--GACUCGGu || ||| | | | ||||||| gaGUACCU-CAGCAUGCUGAGCCa 2 21 276 298 [mm9:16:87470982-87471004:+] 0.5006 149 7 -21.46 -0.3598 MIMAT0000235 mmu-miR-202-3p 74112 Usp16 agaAGGGUACGCGAUAUGGAGa ||:|| || |||||||| cggUCUCA--CGAUAUACCUCu 2 20 30 49 [mm9:16:87470736-87470755:+] 0.4873 160 7 -20.47 -0.3804 MIMAT0000248 mmu-miR-30e 74112 Usp16 gaaggucagUUCCUACAAAUGu || |||||||: cagaaaaaaAAUCAUGUUUAUu 2 14 102 123 [mm9:16:87483578-87483599:+] 0.5459 133 0 -6.22 -0.1539 MIMAT0000369 mmu-miR-292-5p 74112 Usp16 guuuucUC-GGGGGUCAA-ACUCa || :::|||||| |||| ugucuuAGUUUUCCAGUUCUGAGa 2 17 254 277 [mm9:16:87470960-87470983:+] 0.5006 123 0 -16.61 -0.4284 MIMAT0000514 mmu-miR-30c 74112 Usp16 cgacucucacauccUACAAAUGu |||||||: acagaaaaaaaaucAUGUUUAUu 2 10 101 123 [mm9:16:87483577-87483599:+] 0.5459 129 0 -5.48 -0.1554 MIMAT0000515 mmu-miR-30d 74112 Usp16 gaaggucagccccUACAAAUGu |||||||: cagaaaaaaaaucAUGUUUAUu 2 10 102 123 [mm9:16:87483578-87483599:+] 0.5459 129 0 -6.89 -0.1584 MIMAT0000533 mmu-miR-26a 74112 Usp16 ucgGAU--AGGAC-CUAAUGA-ACUu ||| |:||| | ||||| ||| uaaCUAAGUUCUGUGCUUACUCUGAc 2 20 215 240 [mm9:16:87483691-87483716:+] 0.4961 125 0 -11.94 -0.3999 MIMAT0000534 mmu-miR-26b 74112 Usp16 ugGAU--AGGAC-UUAAUGA-ACUu ||| |:||| : ||||| ||| aaCUAAGUUCUGUGCUUACUCUGAc 2 20 216 240 [mm9:16:87483692-87483716:+] 0.4961 121 0 -11.20 -0.3999 MIMAT0000648 mmu-miR-10a 74112 Usp16 guGUUUAAGCCUAGAUGUC-CCAu |||| | ||:||||| ||| ggCAAAAU--AAUUUACAGCGGUu 2 22 136 157 [mm9:16:87483612-87483633:+] 0.5466 126 0 -14.93 -1.1971 MIMAT0000661 mmu-miR-214 74112 Usp16 ugACGGACAGAC---ACGGACGACa | ||| ||| |||||||| agUCCCUUGCUGCCAAGCCUGCUGa 2 21 342 366 [mm9:16:87471048-87471072:+] 0.5006 151 7 -22.61 -0.4690 MIMAT0000665 mmu-miR-223 74112 Usp16 accccauaaacUGUUUGACUGu |:|||||||: uugacacaucaAUAAACUGAUa 2 12 254 275 [mm9:16:87483730-87483751:+] 0.5437 135 0 -12.97 -0.1328 MIMAT0000665 mmu-miR-223 74112 Usp16 accCCAUAAACUGU-UUGACUGu | | ||| | | ||||||| ccaGAUUUUUAAAAUAACUGACc 2 20 296 318 [mm9:16:87471002-87471024:+] 0.5006 154 7 -8.06 -0.8656 MIMAT0000665 mmu-miR-223 74112 Usp16 accCCAUAAACUGUUUGACUGu || | ||| :||||||| gguGGAAGCUGA-GAACUGACu 2 20 394 414 [mm9:16:87471100-87471120:+] 0.5006 153 7 -16.75 -0.2583 MIMAT0000667 mmu-miR-33 74112 Usp16 acGUUACGU-UGAUG-UUACGUg |||| :| | || |||||| uuCAAUAUACAAAACGAAUGCAu 2 20 472 494 [mm9:16:87471178-87471200:+] 0.4924 122 6 -11.25 -0.8579 MIMAT0000671 mmu-miR-224 74112 Usp16 uugccuuggugauCACUGAAu ||||||| ------------uGUGACUUu 2 9 1 9 [mm9:16:87470707-87470715:+] 0.6046 140 7 -10.24 -0.4432 MIMAT0000741 mmu-miR-377 74112 Usp16 uguuUUCAACGGAAACACACUa || | || ||||||| cugcAAUUCGC---UGUGUGAa 2 19 53 71 [mm9:16:87470759-87470777:+] 0.5006 142 7 -10.79 -0.2205 MIMAT0004745 mmu-miR-384-5p 74112 Usp16 uguaacggauccUUA--ACAAAUGu ||| ||||||: ugacagaaaaaaAAUCAUGUUUAUu 2 12 99 123 [mm9:16:87483575-87483599:+] 0.5459 126 0 -5.75 -0.1569 MIMAT0001420 mmu-miR-433 74112 Usp16 uguggcuccucgggUAGUACua |||||| augacagaaaaaaaAUCAUGuu 3 9 98 119 [mm9:16:87483574-87483595:+] 0.5459 120 0 -7.69 -0.2550 MIMAT0001632 mmu-miR-451 74112 Usp16 uuGAGUCAUUACCAUUGCCAAa || : |:| |||||||| ccCUGGCUGA-CCUAACGGUUc 2 21 193 213 [mm9:16:87470899-87470919:+] 0.5006 146 7 -10.54 -0.1909 MIMAT0003130 mmu-miR-486 74112 Usp16 gagccccgucgagucAUGUCCu |||||| guuuauuuauuuaaaUACAGGc 2 8 117 138 [mm9:16:87483593-87483614:+] 0.5459 120 6 -8.26 -0.3001 MIMAT0003169 mmu-miR-539 74112 Usp16 ugugUGGUUCCUAUUAAAGAGg ||| || | :||||||| acugACCCAGAAAGAUUUCUCu 2 19 312 333 [mm9:16:87471018-87471039:+] 0.5006 162 7 -14.04 -0.5525 MIMAT0003182 mmu-miR-494 74112 Usp16 cuccaaagggcacaUACAAAgu |||||| acagaaaaaaaaucAUGUUUau 3 9 101 122 [mm9:16:87483577-87483598:+] 0.5459 120 0 -3.40 -0.1469 MIMAT0003727 mmu-miR-374 74112 Usp16 gugaaucguccaacAUAAUAUa ||||||| gcuuuuauacuggcUAUUAUAa 2 9 36 57 [mm9:16:87483512-87483533:+] 0.5722 140 7 -6.16 -0.9193 MIMAT0003893 mmu-miR-761 74112 Usp16 acacagucaaagUGGGACGACg | ||||||| cccuugcugccaAGCCUGCUGa 2 11 345 366 [mm9:16:87471051-87471072:+] 0.5006 142 7 -16.15 -0.4792 MIMAT0003893 mmu-miR-761 74112 Usp16 acACAGUCAAAGUGGGA-CGACg | |:: | | :|||| |||| uuUCUUGCUAUAGCCCUGGCUGa 2 21 180 202 [mm9:16:87470886-87470908:+] 0.5006 120 0 -14.13 -0.2762 MIMAT0004941 mmu-miR-544 74112 Usp16 cucgaacGAUU--UUUAC-GUCUUa |||| ||||| ||||| uguucacCUAAGUAAAUGACAGAAa 2 16 83 107 [mm9:16:87483559-87483583:+] 0.5453 126 0 -10.29 -1.3107

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G062438 Usp16 Mus musculus 74112

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Usp16 mghv-miR-M1-3 beg:75 end:92 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& ||.| ||.|||||| &5' ------AATTA-TGTTCACCT- 3' Usp16 mmu-miR-1948 beg:239 end:258 pic:3' GACATGCTCACGAG-ACGGATTT 5'& |.||| | |||.|.| &5' ------GGGTGGTAGTGCTTGA- 3' Usp16 mmu-miR-1953 beg:6 end:20 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& || .|||||.| &5' ----------AGTGCTTTCTC- 3' Usp16 mmu-miR-199a-5p beg:31 end:49 pic:3' CTTGTCCATCAGACT-TGTGACCC 5'& |.| || |.||||| &5' -------TGG-CTTTTATACTGG- 3' Usp16 mmu-miR-199bstar beg:31 end:49 pic:3' CTTGTCCATCAGATT-TGTGACCC 5'& |.| || |.||||| &5' -------TGG-CTTTTATACTGG- 3' Usp16 mmu-miR-3472 beg:27 end:55 pic:3' CCAAGGAAGGTCGAA-----GACCGATAAT 5'& ||| ..|||| |||||||||| &5' ----CCTA-TGGCTTTTATACTGGCTATTA 3' Usp16 mmu-miR-540-3p beg:231 end:242 pic:3' GGTCCTAGCTGGAGACTGGA 5'& |||||||. &5' -----------CTCTGACT- 3' Usp16 mmu-miR-742 beg:26 end:42 pic:3' AAATGGGTCGTACCACCGAAAG 5'& |||.| |||||||. &5' ---ACCTA------TGGCTTTT 3' Usp16 mmu-miR-871 beg:199 end:217 pic:3' GTACTGACCGTGATTAGACTTAT 5'& || .||.|||||| &5' -------GGAAG-GATTTGAATA 3' Usp16 mmu-miR-881star beg:7 end:22 pic:3' TCTACACTGACAATAGAGAGAC 5'& || |.|||||| &5' ----------GTGCTTTCTCTG 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Usp16 mmu-miR-127 192 215 CGGUUCGAG--UCUGCCUAGGCU- :||| ||: :|| |||| || UUCAA-CUUUAGGAAGGAUUUGAA Usp16 mmu-miR-140* 223 248 -AGGCACCAAGAUGGGACA---CCAU- ||:||| :|||:||| |||: UUCUGUGC--UUACUCUGACUGGGUGG Usp16 mmu-miR-148a 238 275 -UGUUUCAAGACAUCACG---------------UGACU- || ::|| ||||||| ||||| GACUGGGUG--GUAGUGCUUGACACAUCAAUAAACUGAU Usp16 mmu-miR-148b 216 241 -UGUUUCAAGACACUACGU-GACU- || |||||||||| |||| AACUAAGUUCUGUGCUUACUCUGAC Usp16 mmu-miR-152 217 241 GGGUUCAAGACAGUACGU----GACU- |:||||||||| || |||| ACUAAGUUCUGU---GCUUACUCUGAC Usp16 mmu-miR-201 211 248 UCUUGU----------UACGGAA-----UGACUCAU- |||:| :|||:| ||||:||: UGAAUAACUAAGUUCUGUGCUUACUCUGACUGGGUGG Usp16 mmu-miR-223 242 277 -CC-CCAUA---AACUGU--------UUGACUGU- || |||| |||||| ||||||:| GGGUGGUAGUGCUUGACACAUCAAUAAACUGAUAU Usp16 mmu-miR-26a 228 259 -CGGAUAG----GACCUA-----AUGAACUU ||:|| ||||:| |:||||| UGCUUACUCUGACUGGGUGGUAGUGCUUGAC Usp16 mmu-miR-295 237 257 UCUGAGUUUUCAUCAUCGUGAAA |||| ::||:||||::||| UGACU---GGGUGGUAGUGCUUG Usp16 mmu-miR-302c 238 258 GGUGACUUUGUACCUUCGUGAAC- ||||: :||| ||::|||| -GACUGG---GUGGUAGUGCUUGA Usp16 mmu-miR-324-3p 220 254 GGUCGU--CGUGGA----------CC-CCGUCACC ||: |::|:| || ||:|||| -AAGUUCUGUGCUUACUCUGACUGGGUGGUAGUGC Usp16 mmu-miR-34b 34 53 GUUAGUCGAUUAAUGUGACGGAU- :||| |||:|||| ||| ----UGGCUU-UUAUACUGGCUAU Usp16 mmu-miR-425 242 281 -CCGCC---------UGUG-----------CUGUAAGGGCUA ||:|| |||| ||:|||||| GGGUGGUAGUGCUUGACACAUCAAUAAACUGAUAUUCCC--- Usp16 mmu-miR-455-5p 242 264 GCUA-CAUCAGGUUUCCGUGUAU |:| ||||| | | ||||| GGGUGGUAGUGCUU-GACACAUC Usp16 mmu-miR-488 8 24 AACUCUCACGAUAAUAGACCC |||||| ||||| ----AAGUGCUUUC-UCUGGA Usp16 mmu-miR-676 188 209 -UCGAGUUGUUGGAGUCCUGCC- ||:|: ||||:|:|||| || UAGUUU--CAACUUUAGGAAGGA Usp16 mmu-miR-683 130 157 CUCCUGUGUC---------GAAUGUCGUCC |:|||| :|||||||:| ---AAUACAGGCAAAAUAAUUUACAGCGGU Usp16 mmu-miR-691 184 207 AAAAGA-CGGAGA-GAAGUCCUUA |||| |::|| |||:||||| -CUUCUAGUUUCAACUUUAGGAAG Usp16 mmu-miR-701 144 159 AGGUAGAUAAA-GUCGCCGAUU |||| ||||||:| ------AAUUUACAGCGGUUU- Usp16 mmu-miR-718 231 252 GCUGUGGGCC-GGCCCGCCUUC- :||:| | |:|||:|| || --UUACUCUGACUGGGUGGUAGU Usp16 mmu-miR-140* 224 249 AGGCACCAA-GAUGG--GA--CACCAU ||:||| || || |: || |||||| TCTGTGCTTACT-CTGACTGGGTGGTA Usp16 mmu-miR-148a 217 239 UGUUUCAAGACAU-CACGUGACU || |||||||||: | | |||| ACTAAGTTCTGTGCTTACTCTGA Usp16 mmu-miR-148b 217 239 UGUUUCAAGACAC-UACGUGACU || |||||||||| | | |||| ACTAAGTTCTGTGCTTACTCTGA Usp16 mmu-miR-201 221 246 UCUUGUUACG-----GAAUGACUCAu || | :||| || ||||:|| AGTTCTGTGCTTACTCTGACTGGGTg Usp16 mmu-miR-223 243 275 CC-CCAU-A--AACUG--------UUUGACUGU || |||| | ||||| |||||||:| GGTGGTAGTGCTTGACACATCAATAAACTGATA Usp16 mmu-miR-26a 229 258 CGGAU-AG---GACCUA-----AUGAACUu ||:|| || ||||:| |:||||| GCTTACTCTGACTGGGTGGTAGTGCTTGAc Usp16 mmu-miR-295 231 256 ucUGAGUUU---UCAUCAUCGUGAAa |||| :| :||:||||::||| ttACTCTGACTGGGTGGTAGTGCTTg Usp16 mmu-miR-302c 233 256 gGUGACU-UUGUACCUUCGUGAAC | |||| : :||| ||::|||| aCTCTGACTGGGTGGTAGTGCTTG Usp16 mmu-miR-324-3p 232 253 ggucGUCGUGGACC-CCGUCACc | | ||: || ||:|||| tactCTG-ACTGGGTGGTAGTGc Usp16 mmu-miR-34b 31 51 GUUAGUCGAUUAAUGUGACGGAU | || :||| |||:|||| ||| CTAT-GGCT-TTTATACTGGCTA Usp16 mmu-miR-425 262 280 ccgccUGUG-CUGUAAGGGcua | || ||:|||||| tcaatAAACTGATATTCCC--- Usp16 mmu-miR-488 4 23 aacUCUCACGAUAAUAGACCc | |||||| || ||||| caaAAAGTGCT-TTCTCTGGa Usp16 mmu-miR-676 189 207 UCGAGUUGUUGGAGUCCUGCC ||:|: ||||:|:|||| || AGTTT--CAACTTTAGGAAGG Usp16 mmu-miR-683 134 156 cUCC--UGUGUCGAAUGUCGUCc ||| | |:| :|||||||:| cAGGCAAAATAATTTACAGCGGt Usp16 mmu-miR-691 183 206 aaAAGA-CGGAG-AGAAGUCCUUa |||| |::|| |||:||||| ccTTCTAGTTTCAACTTTAGGAAg Usp16 mmu-miR-701 138 159 agguagaUAAA-GUCGCCGAuu |||| ||||||:| caaaataATTTACAGCGGTTtt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp16 RAID00002660 mmu-miR-374b-5p miRNA MIMAT0003727 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00027031 mmu-miR-30c-5p miRNA MIMAT0000514 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00049944 mmu-miR-292a-5p miRNA MIMAT0000369 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00096879 mmu-miR-494-3p miRNA MIMAT0003182 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00138668 mmu-miR-433-3p miRNA MIMAT0001420 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00365387 mmu-miR-539-5p miRNA MIMAT0003169 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00387728 mmu-miR-6908-5p miRNA MIMAT0027716 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00452340 mmu-miR-325-3p miRNA MIMAT0004640 Usp16 mRNA 74112 Prediction 0.2202 Usp16 RAID00607795 mmu-miR-216c-3p miRNA MIMAT0029889 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00663306 mmu-miR-708-3p miRNA MIMAT0003498 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00817979 mmu-miR-30b-5p miRNA MIMAT0000130 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00818405 mmu-miR-10a-5p miRNA MIMAT0000648 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID00873535 mmu-miR-466o-5p miRNA MIMAT0014885 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01287575 mmu-miR-26b-5p miRNA MIMAT0000534 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01320312 mmu-miR-377-3p miRNA MIMAT0000741 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01445147 mmu-miR-384-5p miRNA MIMAT0004745 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01489650 mmu-miR-322-3p miRNA MIMAT0000549 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01538579 mmu-miR-149-5p miRNA MIMAT0000159 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01620583 mmu-miR-217-3p miRNA MIMAT0017072 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01671860 mmu-miR-202-3p miRNA MIMAT0000235 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01723781 mmu-miR-30a-5p miRNA MIMAT0000128 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01766029 mmu-miR-24-3p miRNA MIMAT0000219 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01775323 mmu-miR-30d-5p miRNA MIMAT0000515 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01797675 mmu-miR-761 miRNA MIMAT0003893 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID01823455 mmu-miR-33-5p miRNA MIMAT0000667 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02109712 mmu-miR-544-3p miRNA MIMAT0004941 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02239353 mmu-miR-486a-5p miRNA MIMAT0003130 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02350171 mmu-miR-3472 miRNA MIMAT0015643 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02540352 mmu-miR-6951-5p miRNA MIMAT0027802 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02602556 mmu-miR-30e-5p miRNA MIMAT0000248 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02775626 mmu-miR-125a-3p miRNA MIMAT0004528 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02794149 mmu-miR-154-5p miRNA MIMAT0000164 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02844125 mmu-miR-144-3p miRNA MIMAT0000156 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID02962901 mmu-miR-742-3p miRNA MIMAT0004237 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03070558 mmu-miR-466c-5p miRNA MIMAT0004877 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03116905 mmu-miR-224-5p miRNA MIMAT0000671 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03118073 mmu-miR-451a miRNA MIMAT0001632 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03133664 mmu-miR-7078-3p miRNA MIMAT0028063 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03319076 mmu-miR-129-5p miRNA MIMAT0000209 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03590950 mmu-miR-26a-5p miRNA MIMAT0000533 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03648310 mmu-miR-466b-5p miRNA MIMAT0004875 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03797754 mmu-miR-214-3p miRNA MIMAT0000661 Usp16 mRNA 74112 Prediction 0.1828 Usp16 RAID03832006 mmu-miR-223-3p miRNA MIMAT0000665 Usp16 mRNA 74112 Prediction 0.1828