DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rab40c ATTTA 95-940 1208-1212;1372-1376 Rab40c WTATTTATW 95-940 1206-1214 Rab40c WWATTTAWW 95-940 1206-1214 Rab40c WWTATTTATWW 95-940 1205-1215 Rab40c WWWATTTAWWW 95-940 1205-1215

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 224624 Rab40c cguuccGUCACCGGACAUGUCa :| | ::||||||| uguucuUACUUCUUUGUACAGu 2 17 1474 1495 [mm9:17:26019078-26019099:-] 0.5630 144 7 -12.43 -0.9220 MIMAT0004539 mmu-miR-183* 224624 Rab40c aaUACCGGGAAGCC----AUU-AAGUg :||||||||| | ||| |||| uuGUGGCCCUUCUGCCUUUAAGUUCAu 2 21 799 825 [mm9:17:26019748-26019774:-] 0.5095 131 0 -24.19 -0.2838 MIMAT0004541 mmu-miR-188-3p 224624 Rab40c acgUUUGGGACGUACACCCUc :::|: || ||||||| acgGGGCUAUGGUUGUGGGAa 2 19 1241 1261 [mm9:17:26019312-26019332:-] 0.4968 150 7 -18.12 -0.2133 MIMAT0000240 mmu-miR-207 224624 Rab40c cucccuccUCUCGGUCCUCUUCg ||| |:|||||||| agcuccuaAGACCUAGGAGAAGa 2 16 569 591 [mm9:17:26019982-26020004:-] 0.5005 163 7 -20.51 -0.4056 MIMAT0000240 mmu-miR-207 224624 Rab40c cucccuccucucgguCCUCUUcg |||||| ccccuuuauuuauauGGAGAAca 3 9 261 283 [mm9:17:26020290-26020312:-] 0.5639 120 0 -8.52 -0.1125 MIMAT0000375 mmu-miR-297a 224624 Rab40c ugUACGUGUACGUG--UGU-AUGUa :|||||| ||: ||| |||| gcGUGCACA-CCAUCAACACUACAc 2 21 1417 1440 [mm9:17:26019133-26019156:-] 0.5630 121 0 -19.97 -0.4157 MIMAT0004622 mmu-let-7c-1* 224624 Rab40c ccuuucgaucuuccAACAUGUc ||||||| acauuuuaccuguuUUGUACAu 2 9 281 302 [mm9:17:26020271-26020292:-] 0.5639 140 7 -5.97 -0.9345 MIMAT0004622 mmu-let-7c-1* 224624 Rab40c ccuuucgaucuuccAACAUGUc ||||||| uuguucuuacuucuUUGUACAg 2 9 1473 1494 [mm9:17:26019079-26019100:-] 0.5630 140 7 -10.76 -0.6447 MIMAT0004628 mmu-miR-21* 224624 Rab40c cuGUCGGGUAGCUGACGACAAc |||:|| | ::||||||| acCAGUCC-U--GUUGCUGUUg 2 21 1335 1353 [mm9:17:26019220-26019238:-] 0.4968 151 7 -23.76 -0.1356 MIMAT0004635 mmu-miR-92a* 224624 Rab40c cauuacGGUGGUUAGGGGUGGa :|||| |||||||| caagcaUCACCUUUCCCCACCa 2 17 1317 1338 [mm9:17:26019235-26019256:-] 0.4968 160 7 -26.96 -0.8603 MIMAT0004636 mmu-miR-93* 224624 Rab40c gcCCUUCACGAUCGAGUCGUCa | || || || :||||||| caGUAAAUG-UACUUCAGCAGu 2 21 1492 1512 [mm9:17:26019061-26019081:-] 0.5630 158 7 -14.46 -0.5087 MIMAT0000544 mmu-miR-129-3p 224624 Rab40c uacgAAAAACCCCAUUCCCGAa ||||| ||||||| uacaUUUUU----AAAGGGCUg 2 19 298 315 [mm9:17:26020258-26020275:-] 0.5639 141 7 -10.75 -0.6204 MIMAT0000549 mmu-miR-322* 224624 Rab40c caCAACGUCGCGAAGU-ACAAa | || :| |:|||| |||| guGGUGGGGGGUUUCAGUGUUg 2 20 395 416 [mm9:17:26020157-26020178:-] 0.4959 127 0 -16.66 -0.3630 MIMAT0000569 mmu-miR-330* 224624 Rab40c agagacGUCCGGGAC-ACGA-AACg || |:|||| |||| ||| ccccacCA-GUCCUGUUGCUGUUGa 2 18 1331 1354 [mm9:17:26019219-26019242:-] 0.4968 122 0 -17.83 -0.3056 MIMAT0003127 mmu-miR-484 224624 Rab40c uagcccuccccugaCUCGGACu ||||||| gcagccugaccuggGAGCCUGa 2 9 1276 1297 [mm9:17:26019276-26019297:-] 0.4968 140 7 -17.95 -0.1090 MIMAT0003166 mmu-miR-546 224624 Rab40c cuGAGGCACG-GUGGUa || ||||| ||||| gcCUGCGUGCACACCAu 2 15 1413 1429 [mm9:17:26019144-26019160:-] 0.5630 126 0 -21.81 -0.1170 MIMAT0003170 mmu-miR-541 224624 Rab40c ucacACUGGUUGUAGU-CUUAGGGAa ||: ||| || ||||||| caccUGGGAAACCCCACUAAUCCCUc 2 22 602 627 [mm9:17:26019946-26019971:-] 0.5005 152 7 -15.68 -0.1613 MIMAT0003731 mmu-miR-671-5p 224624 Rab40c gaGGUCGGGGAGGUCCCGAAGGa | :||:: |: ||||||| agCAGGCUUGGCUCCGGCUUCCa 2 22 502 524 [mm9:17:26020049-26020071:-] 0.4852 149 7 -22.54 -0.1718 MIMAT0003735 mmu-miR-672 224624 Rab40c agUGUGUGUCAU--GUGGUUGGAGu :|| : ||| ||:||||||| uaGCAGCUUGUACUCAUCAACCUCg 2 22 746 770 [mm9:17:26019803-26019827:-] 0.5095 156 7 -21.49 -0.2077 MIMAT0003736 mmu-miR-670 224624 Rab40c aagUGGUGUAUGUGAGUCCCUa | | || : ||||||| ggaAGCUCAGGAUGUCAGGGAa 2 20 359 380 [mm9:17:26020193-26020214:-] 0.5147 143 7 -13.34 -0.1800 MIMAT0003736 mmu-miR-670 224624 Rab40c aagugguguaugugAGUCCCUa ||||||| uuuuuaaagggcugUCAGGGAa 2 9 302 323 [mm9:17:26020250-26020271:-] 0.5639 140 7 -12.02 -0.2382 MIMAT0014815 mmu-miR-3099* 224624 Rab40c guUCCCGAC-CUUCCUUC-GACc ||||||| |:||||| ||| aaAGGGCUGUCAGGGAAGCCUGg 2 20 307 329 [mm9:17:26020244-26020266:-] 0.5393 138 0 -32.23 -0.1161 MIMAT0003451 mmu-miR-677 224624 Rab40c agucUUCGAUUAGUAGUGA-CUu |||:| || :||||| || cuuuAAGUUCAU-GUCACUAGAa 2 19 814 835 [mm9:17:26019738-26019759:-] 0.5095 124 0 -12.28 -0.7221 MIMAT0004825 mmu-miR-423-5p 224624 Rab40c uuucagagcGAGAGACGGGGAGu || |||||||| cagggaagcCUGGAUGCCCCUCa 2 15 317 339 [mm9:17:26020234-26020256:-] 0.5393 146 7 -24.64 -0.3710 MIMAT0004825 mmu-miR-423-5p 224624 Rab40c uuucAGAGC--GAGAGACGGGGAGu ||| | | | ||||||| acucUCUGGAACACCAAGCCCCUCc 2 20 861 885 [mm9:17:26019688-26019712:-] 0.4987 142 7 -24.44 -0.2147 MIMAT0003455 mmu-miR-679 224624 Rab40c ugGUUCUCAGUGGA-----GU-GUCAGg |||| |||||| || ||||| auCAAGCAUCACCUUUCCCCACCAGUCc 2 21 1315 1342 [mm9:17:26019231-26019258:-] 0.4968 123 0 -25.77 -0.2026 MIMAT0003467 mmu-miR-688 224624 Rab40c cuuauuCAUCAGCGGACGCu | | | ||||||| ggaccuGGAUUGGCCUGCGu 2 15 1401 1420 [mm9:17:26019153-26019172:-] 0.5630 146 7 -14.82 -0.1436 MIMAT0003472 mmu-miR-693-5p 224624 Rab40c cuUUUGAAAGCCUACACC-GAc | |||| | | ||||| || cuACACUUGCUGCUGUGGACUc 2 20 1435 1456 [mm9:17:26019117-26019138:-] 0.5630 127 0 -10.00 -0.2148 MIMAT0003480 mmu-miR-297b-5p 224624 Rab40c uguacaAGUACGUGUG-UAUGUa | |||: :|| ||||| uuucagUGAUGUUUACUAUACAc 2 17 645 667 [mm9:17:26019906-26019928:-] 0.5005 120 0 -10.85 -0.1671 MIMAT0003742 mmu-miR-455 224624 Rab40c caCAUAUAC-GGGCAC-CUGACg ||: ||| ||:||| ||||| caGUGGAUGUCCUGUGUGACUGc 2 20 998 1020 [mm9:17:26019553-26019575:-] 0.4878 134 0 -28.56 -0.1726 MIMAT0003487 mmu-miR-697 224624 Rab40c agaGGUGUCCUGGU-CCUACAa :||: |||| |||||| agaUCAUCUUACCAUGGAUGUu 2 19 1150 1171 [mm9:17:26019402-26019423:-] 0.4968 122 6 -17.95 -0.1482 MIMAT0004837 mmu-miR-615-5p 224624 Rab40c cuaggcUCGUGGCCCCUGGGGg || :|| ||||||| gggcacAGGGCCUAGGACCCCa 2 17 719 740 [mm9:17:26019833-26019854:-] 0.5095 152 7 -25.82 -0.2025 MIMAT0004856 mmu-miR-105 224624 Rab40c ugGUGUUCGUAGACUCGU-GAACc | | ||::||| |||| |||| gaCCCCAGUGUCU-AGCAGCUUGu 2 22 734 756 [mm9:17:26019817-26019839:-] 0.5095 131 0 -18.61 -0.1409 MIMAT0004865 mmu-miR-297c 224624 Rab40c uguaCAUGUACGUGUG-UAUGUa ||: |||: :|| ||||| uucaGUG-AUGUUUACUAUACAc 2 19 646 667 [mm9:17:26019906-26019927:-] 0.5005 120 0 -11.21 -0.1704 MIMAT0004877 mmu-miR-466c-5p 224624 Rab40c auACAUGUACGUGUGUGU-GUAg || :| |||:::|||| ||| auUG-GCCUGCGUGCACACCAUc 2 21 1409 1430 [mm9:17:26019143-26019164:-] 0.5630 126 0 -19.83 -0.1436 MIMAT0004893 mmu-miR-574-5p 224624 Rab40c ugUGUGAGUGUGUGUGUGU-GAGu |:::|:|| :|:||||| ||| ugAUGUUUAC-UAUACACAUCUCc 2 22 651 673 [mm9:17:26019900-26019922:-] 0.5005 131 0 -19.02 -0.1110 MIMAT0004938 mmu-miR-875-3p 224624 Rab40c guaucggaGUCAUA-AAAGUCc ||||:| |||||| cuggggaaCAGUGUAUUUCAGa 2 14 470 491 [mm9:17:26020082-26020103:-] 0.4852 125 6 -13.60 -0.2014 MIMAT0005830 mmu-miR-466l 224624 Rab40c uuauacacacGUACAUAAAUAu | | ||||||| gccaggcuccCCUUUAUUUAUa 2 13 253 274 [mm9:17:26020299-26020320:-] 0.5300 144 7 -5.60 -0.6562 MIMAT0005837 mmu-miR-1187 224624 Rab40c aaugugUGUAUGUGUGUGU-GUAu :| |:|:::|||| ||| ggauugGCCUGCGUGCACACCAUc 2 18 1407 1430 [mm9:17:26019143-26019166:-] 0.5630 121 0 -17.88 -0.1464 MIMAT0005849 mmu-miR-1191 224624 Rab40c auCCCGAU-GUAUCAU-UCUGAc | | || ||:||| ||||| ucGCGAUAGAAUGGUAUAGACUu 2 20 1375 1397 [mm9:17:26019176-26019198:-] 0.5340 122 0 -10.50 -0.2518 MIMAT0007872 mmu-miR-1906 224624 Rab40c ucgGGACGGAGUCCGACG-ACGu |||| |::| |||| ||| ggaCCUGGAUUGGCCUGCGUGCa 2 20 1401 1423 [mm9:17:26019150-26019172:-] 0.5630 127 0 -21.29 -0.1427 MIMAT0007876 mmu-miR-1907 224624 Rab40c uggAGGUCU-AGGAG-ACGACGAg || | | | | | ||||||| ccaUCAACACUACACUUGCUGCUg 2 20 1426 1449 [mm9:17:26019124-26019147:-] 0.5630 145 7 -15.32 -0.2376 MIMAT0009392 mmu-miR-1929 224624 Rab40c gaGAC-GAGAU---AUUUCAG-GAUCUu ||| ||:|| | | ||| ||||| uuCUGCCUUUAAGUUCAUGUCACUAGAa 2 22 808 835 [mm9:17:26019738-26019765:-] 0.5095 123 0 -20.68 -0.7258 MIMAT0009403 mmu-miR-1939 224624 Rab40c cacGUAACCGUCCCUUAGCu | || : ||||||| gacCUUUUCUCUGGAAUCGc 2 18 1359 1378 [mm9:17:26019195-26019214:-] 0.5008 141 7 -10.69 -0.2488 MIMAT0009406 mmu-miR-1941-3p 224624 Rab40c uacCCUCUAUGACGAUUCUAc | | :| :| ||||||| aguGCACGU-UUCCUAAGAUc 2 19 1135 1154 [mm9:17:26019419-26019438:-] 0.4829 144 7 -6.40 -0.1837 MIMAT0009407 mmu-miR-1942 224624 Rab40c guuggucuacuucUGUAGACu ||||||| caggcuuuccuccACAUCUGa 2 9 119 139 [mm9:17:26020434-26020454:-] 0.5104 140 7 -13.02 -0.3543 MIMAT0009412 mmu-miR-1946a 224624 Rab40c uuuucacacACGGUGGUGACGGG-CCGa |||| :|| |||| ||| ucuaccuccUGCCCUCAGGGCCCUGGCc 2 19 1071 1098 [mm9:17:26019475-26019502:-] 0.5368 126 0 -24.51 -0.1159 MIMAT0009416 mmu-miR-1949 224624 Rab40c uugaUA-CGACUGUAGGACCAUAUc || || ||:| ||||||| uggaAUCGC-GAUAGAAUGGUAUAg 2 21 1370 1393 [mm9:17:26019180-26019203:-] 0.5049 149 7 -18.54 -0.4142 MIMAT0009422 mmu-miR-1951 224624 Rab40c auCGGUGUGGUCAGAGGUGAUg ||::| ::| |||||||| uuGCUGCUGUGGACUCCACUAu 2 21 1441 1462 [mm9:17:26019111-26019132:-] 0.5630 160 7 -18.05 -0.2438 MIMAT0009431 mmu-miR-1958 224624 Rab40c ugAAUGACGA------AGGUGA-AAGGAu ||:||||| |||||| ||||| acUUGCUGCUGUGGACUCCACUAUUCCUg 2 21 1439 1467 [mm9:17:26019106-26019134:-] 0.5630 131 0 -29.65 -0.3107 MIMAT0009434 mmu-miR-1961 224624 Rab40c aaGAUUGAUGAUGGAGu :||||| ||||||| gcUUAACU-CUACCUCc 2 16 1064 1079 [mm9:17:26019494-26019509:-] 0.5368 157 7 -16.67 -0.1452 MIMAT0009444 mmu-miR-1970 224624 Rab40c guuucGGAU-AGGGGUCACUGUGu |||: |:|::|||||||| uuugaCCUGUUUCUUAGUGACACu 2 19 840 863 [mm9:17:26019710-26019733:-] 0.4987 165 7 -26.10 -0.3523 MIMAT0009445 mmu-miR-1274a 224624 Rab40c accgcggacuugucCCUGGACu ||||||| gguauagacuuugaGGACCUGg 2 9 1387 1408 [mm9:17:26019165-26019186:-] 0.5340 140 7 -16.81 -0.5275 MIMAT0009446 mmu-miR-1971 224624 Rab40c agagucGGGUCGGAAAUg ::| ||||||| uggcccUUCUGCCUUUAa 2 13 802 819 [mm9:17:26019754-26019771:-] 0.5095 144 7 -17.28 -0.3910 MIMAT0009458 mmu-miR-1981 224624 Rab40c cgGUGCAGAUUCGG--GUCGGAAAUg | | | |:: || | ||||||| gcCUCUUGUGGCCCUUCUGCCUUUAa 2 23 794 819 [mm9:17:26019754-26019779:-] 0.5095 149 7 -22.21 -0.3941 MIMAT0011221 mmu-miR-2145 224624 Rab40c uugguccgggcUGGGACGa ||||||| gauuuauaaauACCCUGCc 2 9 431 449 [mm9:17:26020124-26020142:-] 0.4812 140 7 -12.84 -0.3557 MIMAT0015644 mmu-miR-1186b 224624 Rab40c caccacguacGGAAAUUAGGGu || ||||||| cugggaaaccCCACUAAUCCCu 2 13 605 626 [mm9:17:26019947-26019968:-] 0.5005 144 7 -15.03 -0.1337 MIMAT0000121 mmu-let-7g 224624 Rab40c uuGA-CAUG-UUUGAUGAUGGAGu || ||:| |||| ||||||| cgCUGGUGCUUAACU-CUACCUCc 2 21 1057 1079 [mm9:17:26019494-26019516:-] 0.5368 156 7 -20.68 -0.1481 MIMAT0000122 mmu-let-7i 224624 Rab40c uuGUCGUG-UUUGAUGAUGGAGu ::|::| |||| ||||||| gcUGGUGCUUAACU-CUACCUCc 2 21 1058 1079 [mm9:17:26019494-26019515:-] 0.5368 153 7 -16.74 -0.1467 MIMAT0000124 mmu-miR-15b 224624 Rab40c acaUUUGGUACUACACGACGAu | ||:| | ||||||| ucaACACUA-CACUUGCUGCUg 2 20 1429 1449 [mm9:17:26019124-26019144:-] 0.5630 145 7 -13.18 -0.2354 MIMAT0000126 mmu-miR-27b 224624 Rab40c cguCUUGAAUCGGUG-ACACUu |: || ||| || ||||| acuGGCCUGAGCAACUUGUGAa 2 19 896 917 [mm9:17:26019656-26019677:-] 0.4878 126 0 -15.85 -0.2220 MIMAT0000128 mmu-miR-30a 224624 Rab40c gaaGGUCAGCUCCUACAAAUGu || || : ||||||||| ggcCCUUUCAGUGAUGUUUACu 2 20 640 661 [mm9:17:26019912-26019933:-] 0.5005 159 7 -20.14 -0.4313 MIMAT0000130 mmu-miR-30b 224624 Rab40c ucgacucacaUC-CUACAAAUGu || ||||||||| uggcccuuucAGUGAUGUUUACu 2 13 639 661 [mm9:17:26019912-26019934:-] 0.5005 151 7 -12.53 -0.4313 MIMAT0000144 mmu-miR-132 224624 Rab40c gcugguacCGACAUCUGACAAu || |:||||||| cuugugaaGCCAUGGACUGUUc 2 15 910 931 [mm9:17:26019642-26019663:-] 0.4878 150 7 -15.74 -0.1107 MIMAT0000153 mmu-miR-141 224624 Rab40c gguagaaauggucuGUCACAAu ||||||| guggugggggguuuCAGUGUUg 2 9 395 416 [mm9:17:26020157-26020178:-] 0.4959 140 7 -10.78 -0.3436 MIMAT0000155 mmu-miR-142-3p 224624 Rab40c agguauuucauccuUUGUGAUGu |||||||| gcgugcacaccaucAACACUACa 2 10 1417 1439 [mm9:17:26019134-26019156:-] 0.5630 145 7 -14.47 -0.5591 MIMAT0000159 mmu-miR-149 224624 Rab40c ccCUCACUUCUG---UGC-CUCGGUCu || | |||| | | ||||||| ugGACUCCAGACUGGAAGUGAGCCAGg 2 22 232 258 [mm9:17:26020315-26020341:-] 0.4962 147 7 -21.73 -0.1118 MIMAT0000224 mmu-miR-194 224624 Rab40c agguguaccuCAACGACAA-UGu ||||||||| || caccaguccuGUUGCUGUUGACa 2 13 1334 1356 [mm9:17:26019217-26019239:-] 0.4968 124 0 -19.31 -0.1918 MIMAT0000225 mmu-miR-195 224624 Rab40c cgGUUAUAAAG-ACACGACGAu ||| | | | ||||||| auCAACACUACACUUGCUGCUg 2 20 1428 1449 [mm9:17:26019124-26019145:-] 0.5630 146 7 -13.88 -0.2354 MIMAT0000237 mmu-miR-204 224624 Rab40c uccGUAUCCUACUGUUUCC-CUu |||| ||||||||| || uucCAUA-UCUGACAAAGGUGAu 2 20 520 541 [mm9:17:26020032-26020053:-] 0.4928 129 0 -16.96 -0.1425 MIMAT0000248 mmu-miR-30e 224624 Rab40c gaaGGUCAGUUCCUACAAAUGu || |||: ||||||||| ggcCCUUUCAGUGAUGUUUACu 2 20 640 661 [mm9:17:26019912-26019933:-] 0.5005 167 7 -20.14 -0.4249 MIMAT0000383 mmu-let-7d 224624 Rab40c uuGA-UACG-UUGGAUGAUGGAGa || :||| | || ||||||| cgCUGGUGCUUAACU-CUACCUCc 2 21 1057 1079 [mm9:17:26019494-26019516:-] 0.5368 148 7 -19.11 -0.1467 MIMAT0000514 mmu-miR-30c 224624 Rab40c cgacucucacaUC-CUACAAAUGu || ||||||||| cuggcccuuucAGUGAUGUUUACu 2 13 638 661 [mm9:17:26019912-26019935:-] 0.5005 151 7 -15.02 -0.4313 MIMAT0000515 mmu-miR-30d 224624 Rab40c gaaGGUCAGCCCCUACAAAUGu || || | ||||||||| ggcCCUUUCAGUGAUGUUUACu 2 20 640 661 [mm9:17:26019912-26019933:-] 0.5005 163 7 -20.14 -0.4281 MIMAT0000518 mmu-miR-196a 224624 Rab40c ggguUGUUGUACUU-UGAUG-GAu ||| ||| || ||||| || gugcACACCAUCAACACUACACUu 2 19 1419 1442 [mm9:17:26019131-26019154:-] 0.5630 129 0 -14.02 -0.1129 MIMAT0000519 mmu-miR-200a 224624 Rab40c uguagcaauggucuGUCACAAu ||||||| guggugggggguuuCAGUGUUg 2 9 395 416 [mm9:17:26020157-26020178:-] 0.4959 140 7 -12.46 -0.3408 MIMAT0000521 mmu-let-7a 224624 Rab40c uuGA-UAUG-UUGGAUGAUGGAGu || :|:| | || ||||||| cgCUGGUGCUUAACU-CUACCUCc 2 21 1057 1079 [mm9:17:26019494-26019516:-] 0.5368 144 7 -16.61 -0.1467 MIMAT0000522 mmu-let-7b 224624 Rab40c uugGUGUGUUGGAUGAUGGAGu ::| :|||: ||||||| uggUGCUUAACU--CUACCUCc 2 20 1060 1079 [mm9:17:26019494-26019513:-] 0.5368 148 7 -13.51 -0.1452 MIMAT0000523 mmu-let-7c 224624 Rab40c uugguauGUUGGAUGAUGGAGu :|||: ||||||| uggugcuUAACU--CUACCUCc 2 16 1060 1079 [mm9:17:26019494-26019513:-] 0.5368 144 7 -14.88 -0.1467 MIMAT0000524 mmu-let-7e 224624 Rab40c uugauauGUUGGAGGAUGGAGu :||| :||||||| uggugcuUAAC--UCUACCUCc 2 16 1060 1079 [mm9:17:26019494-26019513:-] 0.5368 144 7 -15.01 -0.1581 MIMAT0000525 mmu-let-7f 224624 Rab40c uuGA-UAUG-UUAGAUGAUGGAGu || :|:| | || ||||||| cgCUGGUGCUUAACU-CUACCUCc 2 21 1057 1079 [mm9:17:26019494-26019516:-] 0.5368 144 7 -15.54 -0.1481 MIMAT0000526 mmu-miR-15a 224624 Rab40c guGUU-UGGUAAUACACGACGAu ||| ||:| | ||||||| auCAACACUA-CACUUGCUGCUg 2 21 1428 1449 [mm9:17:26019124-26019145:-] 0.5630 149 7 -15.07 -0.2354 MIMAT0000527 mmu-miR-16 224624 Rab40c gcGGUUAU-AAAUGCACGACGAu :||| | | || ||||||| caUCAACACUACACUUGCUGCUg 2 21 1427 1449 [mm9:17:26019124-26019146:-] 0.5630 155 7 -14.87 -0.2354 MIMAT0000537 mmu-miR-27a 224624 Rab40c cgcCUUGAAUCGGUG-ACACUu |: || ||| || ||||| acuGGCCUGAGCAACUUGUGAa 2 19 896 917 [mm9:17:26019656-26019677:-] 0.4878 126 0 -16.09 -0.2220 MIMAT0000545 mmu-miR-98 224624 Rab40c uuguuauGUUGAAUGAUGGAGu :|||| ||||||| uggugcuUAACU--CUACCUCc 2 16 1060 1079 [mm9:17:26019494-26019513:-] 0.5368 148 7 -14.20 -0.1467 MIMAT0000546 mmu-miR-103 224624 Rab40c aguaUCGGGACAUGUUA-CGACGa :||: ||| : || ||||| ccucGGCUGUGUUUCAUAGCUGCg 2 20 766 789 [mm9:17:26019784-26019807:-] 0.5095 123 0 -15.31 -0.3064 MIMAT0000548 mmu-miR-322 224624 Rab40c agGUUUUGUACUUAACGACGAc ||| || | |||||||| auCAACACUACACUUGCUGCUg 2 21 1428 1449 [mm9:17:26019124-26019145:-] 0.5630 160 7 -19.34 -0.2333 MIMAT0000647 mmu-miR-107 224624 Rab40c acuaUCGGGACAUGUUA-CGACGa :||: ||| : || ||||| ccucGGCUGUGUUUCAUAGCUGCg 2 20 766 789 [mm9:17:26019784-26019807:-] 0.5095 123 0 -15.22 -0.3064 MIMAT0000653 mmu-miR-28 224624 Rab40c gaguuaUCUGACACUCGAGGAa ||::| | ||||||| uaggcaAGGUU-UCAGCUCCUa 2 17 556 576 [mm9:17:26019997-26020017:-] 0.5005 150 7 -14.83 -0.2138 MIMAT0000659 mmu-miR-212 224624 Rab40c accGGCACU--GACCUCUGACAAu ::|||| | :||||||| aacUUGUGAAGCCAUGGACUGUUc 2 20 908 931 [mm9:17:26019642-26019665:-] 0.4878 146 7 -15.48 -0.1118 MIMAT0000661 mmu-miR-214 224624 Rab40c ugacGGACAGACACGGACG-ACa |||| | |||||| || aggaCCUGGAUUGGCCUGCGUGc 2 19 1400 1422 [mm9:17:26019151-26019173:-] 0.5630 122 0 -22.92 -0.1527 MIMAT0000668 mmu-miR-211 224624 Rab40c uccguuuccuACUGUUUCC-CUu ||||||||| || cuuccauaucUGACAAAGGUGAu 2 13 519 541 [mm9:17:26020032-26020054:-] 0.4928 124 0 -14.32 -0.1439 MIMAT0004745 mmu-miR-384-5p 224624 Rab40c uguaacGGAUCCUUA--ACAAAUGu ||| |:| ||||||| ccuggcCCUUUCAGUGAUGUUUACu 2 18 637 661 [mm9:17:26019912-26019936:-] 0.5005 144 7 -10.37 -0.4313 MIMAT0001081 mmu-miR-196b 224624 Rab40c ggguUGUUGUCCUU-UGAUG-GAu ||| || || ||||| || gugcACACCAUCAACACUACACUu 2 19 1419 1442 [mm9:17:26019131-26019154:-] 0.5630 121 0 -14.02 -0.1129 MIMAT0003453 mmu-miR-497 224624 Rab40c auGUU-UGGUGUCACACGACGAc ||| ||:||| | ||||||| auCAACACUACACU-UGCUGCUg 2 21 1428 1449 [mm9:17:26019124-26019145:-] 0.5630 165 7 -22.43 -0.2135 MIMAT0003486 mmu-miR-491 224624 Rab40c ggAGUACCU--UCCCAAGGGGUGa ||| | | | |||||||| aaUCAAGCAUCACCUUUCCCCACc 2 21 1314 1337 [mm9:17:26019236-26019259:-] 0.4968 147 7 -16.18 -0.3494 MIMAT0004828 mmu-miR-708 224624 Rab40c gggUCGAUCUAACAUUCGAGGAa :|| ||:|| | ||||||| auaGGCAAGGUU-UCAGCUCCUa 2 21 555 576 [mm9:17:26019997-26020018:-] 0.5005 162 7 -17.73 -0.2099 MIMAT0003513 mmu-miR-505 224624 Rab40c ucuUUUGGUCGUUCACAACUGc |: || |: : ||||||| accAGUCCUGUUGCUGUUGACa 2 20 1335 1356 [mm9:17:26019217-26019238:-] 0.4968 151 7 -14.28 -0.1821 MIMAT0004869 mmu-miR-421 224624 Rab40c cgcgGGUUA--AUUACAGACAACUa |||:| |: || ||||||| cccaCCAGUCCUGUUG-CUGUUGAc 2 20 1332 1355 [mm9:17:26019218-26019241:-] 0.4968 152 7 -15.85 -0.1030

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G070314 Rab40c Mus musculus 224624

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rab40c mmu-miR-29bstar beg:174 end:188 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||.| ||||||| &5' ----CCGC------AAACCAG- 3' Rab40c mmu-miR-129-3p beg:305 end:315 pic:3' TACGAAAAACCCCATTCCCGAA 5'& ||||||| &5' --------------AAGGGCT- 3' Rab40c mmu-miR-541 beg:609 end:627 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& ||| || | ||||||| &5' ------ACCC-CA-CT-AATCCCT- 3' Rab40c mmu-miR-669g beg:924 end:943 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& |||. | | ||||||| &5' ----TGTTCCC-CC-ACAATGC- 3' Rab40c mmu-miR-669a beg:84 end:103 pic:3' TGTACTTGTA-CGTGTGTGTTGA 5'& .|| || .||||||| &5' -----GACTTGGC-TACACAAC- 3' Rab40c mmu-miR-669l beg:85 end:103 pic:3' TGTATATGTA-CGTGTGTGTTGA 5'& || || .||||||| &5' ------ACTTGGC-TACACAAC- 3' Rab40c mmu-miR-2145 beg:89 end:106 pic:3' TTGGTCCGGGC---TGGGACGA 5'& |||. ||||||| &5' -----GGCTACACAACCCTGC- 3' Rab40c mmu-miR-338-3p beg:536 end:553 pic:3' GTTGTTTTAGTGACTACGACCT 5'& .|||| | |||||||. &5' ------GATCAGT-ATGCTGGG 3' Rab40c mmu-miR-296-3p beg:91 end:106 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& |.|| ||||||| &5' ---------CTACACAACCCT- 3' Rab40c mmu-miR-672 beg:753 end:770 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& .|| ||.||||||| &5' -----TACT---CATCAACCTC- 3' Rab40c mmu-miR-370 beg:180 end:196 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& |||||| ||||||| &5' ACCAGG--------CAGCAGG- 3' Rab40c mmu-miR-200a beg:401 end:417 pic:3' TGTAGCAATGGTCT--GTCACAAT 5'& .| |||||||. &5' -----------GGTTTCAGTGTTG 3' Rab40c mmu-miR-331-3p beg:207 end:222 pic:3' AAGATCCTATCCGGGTCCCCG 5'& .|| |||||||. &5' ---------GGGACCAGGGGT 3' Rab40c mmu-miR-1933-5p beg:1102 end:1116 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& |.| .||||||| &5' -----------GGA-GCCATGAC- 3' Rab40c mmu-miR-326 beg:1286 end:1305 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& |||| | |||||||| &5' ---GGAGCCTGA-CCCAGAGG 3' Rab40c mmu-miR-761 beg:1194 end:1208 pic:3' ACACAGTCAAAGTGGGACGACG 5'& || |||||||. &5' -----------CAGCCTGCTGT 3' Rab40c mmu-miR-761 beg:65 end:78 pic:3' ACACAGTCAAAGTGGGACGACG 5'& .||||||||. &5' ------------GCCCTGCTGT 3' Rab40c mmu-miR-1961 beg:1063 end:1079 pic:3' AAGATTGATGATGGAGT 5'& .||||| ||||||| &5' --TTAACT-CTACCTC- 3' Rab40c mmu-miR-421 beg:1336 end:1355 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |.|| || ||||||| &5' --GTCCTGT---TG-CTGTTGA- 3' Rab40c mmu-miR-186star beg:877 end:892 pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& ||| |||||||| &5' CCCT---------CCTTAGGG- 3' Rab40c mmu-miR-1953 beg:1315 end:1334 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| ||||||| &5' ---AAGCATCAC--CTTTCCC- 3' Rab40c mmu-miR-1958 beg:114 end:129 pic:3' TGAATGACGAAGG--TGAAAGGAT 5'& ||| .||||||| &5' ----------TCCAGGCTTTCCT- 3' Rab40c mmu-miR-484 beg:1280 end:1297 pic:3' TAGCCCTCCCCTGA---CTCGGACT 5'& ||| |||||||| &5' ----------GACCTGGGAGCCTGA 3' Rab40c mmu-miR-423-5p beg:321 end:340 pic:3' TTTCAGAGCGAGAG--ACGGGGAGT 5'& || || ||||||||| &5' --------GC-CTGGATGCCCCTCA 3' Rab40c mmu-miR-423-5p beg:875 end:885 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ||||||| &5' ---------------GCCCCTC- 3' Rab40c mmu-miR-688 beg:1410 end:1420 pic:3' CTTATTCATCAGCGGACGCT 5'& ||||||| &5' ------------GCCTGCG- 3' Rab40c mmu-miR-1981 beg:800 end:819 pic:3' CGGTGCAGATTCGGGT---CGGAAATG 5'& .|||| ||||||| &5' ----------GGCCCTTCTGCCTTTA- 3' Rab40c mmu-miR-1934 beg:199 end:219 pic:3' TCTCCTGCTTCGTC-CCCTGGTCT 5'& |. || ||||||||. &5' -------GGTGCTACGGGACCAGG 3' Rab40c mmu-miR-615-5p beg:723 end:740 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& |.|| |. ||||||| &5' -----GGGC-CTA-GGACCCC- 3' Rab40c mmu-miR-671-5p beg:506 end:524 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& . ||.|| ||||||| &5' --TTGGCTCC-----GGCTTCC- 3' Rab40c mmu-miR-324-5p beg:975 end:992 pic:3' TGTGGTTACGGGAT-CCCCTACGC 5'& ||||. |||||||| &5' ---------CCCTGTGGGGATGC- 3' Rab40c mmu-miR-1982.1 beg:207 end:225 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||| || .||||||| &5' ----GGGAC--CA-GGGGTGAG- 3' Rab40c mcmv-miR-m108-2-3p beg:1206 end:1225 pic:3' TGGCCAGTGAGCAGAGCTCAGTG 5'& |.|| . |.|||||| &5' -CTGGGAGA-----TTGAGTCA- 3' Rab40c mcmv-miR-m108-2-5p.1 beg:997 end:1021 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& ||| .|. .| |||||.|| &5' --GTGGATGTCCTGTGTGACTGC 3' Rab40c mcmv-miR-M23-1-3p beg:147 end:167 pic:3' CCGGAGCCCGGCTGCGTCCTC 5'& || ||| | |.||||||| &5' GGA---GGGGC-ATGCAGGAG 3' Rab40c mcmv-miR-M23-1-3p beg:67 end:86 pic:3' CCGGAGCCCGGCTG-CGTCCTC 5'& ||| | ||.| |||||| &5' -GCC-CT-GCTGTGTGCAGGA- 3' Rab40c mcmv-miR-M23-2 beg:1317 end:1336 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || ||| .||||| &5' --GCATCACCTT--TCCCCA- 3' Rab40c mcmv-miR-M23-2 beg:915 end:937 pic:3' GGCGAA--CTGGCTCCGGGGGTA 5'& || |||.| |||||| &5' --GCCATGGACTGTT-CCCCCA- 3' Rab40c mghv-miR-M1-2 beg:376 end:408 pic:3' TTTCTCCC----------CCTCTCCCCCAGAC 5'& ||.||||| || .||||||.| &5' AAGGAGGGATGAAGCAGTGGT-GGGGGGTTT- 3' Rab40c mmu-let-7c beg:1422 end:1443 pic:3' TTGGTATGTTG-GATGATGGAGT 5'& ||||| |||| |||| ||.| &5' -ACCAT-CAACACTAC-ACTT-- 3' Rab40c mmu-let-7d beg:1059 end:1079 pic:3' TTGATACGTTG-GATGATGGAGA 5'& .||| || ||||||| &5' ----GTGCTTAACT-CTACCTC- 3' Rab40c mmu-let-7f beg:1059 end:1079 pic:3' TTGATATGTTA-GATGATGGAGT 5'& .|.| || ||||||| &5' ----GTGCTTAACT-CTACCTC- 3' Rab40c mmu-let-7g beg:1055 end:1079 pic:3' TTGA-CATGT-TTGATGATGGAGT 5'& .|| ||.| |||| ||||||| &5' -GCTGGTGCTTAACT-CTACCTC- 3' Rab40c mmu-let-7g beg:1487 end:1508 pic:3' TTGACATGTTTGATG-ATGGAGT 5'& ||||||. |||.||| &5' ---TGTACAGTAAATGTACTTCA 3' Rab40c mmu-let-7i beg:1058 end:1079 pic:3' TTGTCGTGT-TTGATGATGGAGT 5'& .| | |||| ||||||| &5' ---GGTGCTTAACT-CTACCTC- 3' Rab40c mmu-let-7i beg:1488 end:1508 pic:3' TTGTCGTGTTTGATG-ATGGAGT 5'& |.|||. |||.||| &5' ----GTACAGTAAATGTACTTCA 3' Rab40c mmu-miR-1186b beg:612 end:626 pic:3' CACCACGTACGGAAATTAGGGT 5'& || ||||||| &5' ----------CCACTAATCCC- 3' Rab40c mmu-miR-1188 beg:1407 end:1429 pic:3' AGGACCGGGTTGGA-GTGTGGT 5'& .|||||. .| | ||||||| &5' --TTGGCCT-GCGTGCACACCA 3' Rab40c mmu-miR-1190 beg:761 end:775 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& ||||||.|||| &5' ----------AACCTCGGCTG- 3' Rab40c mmu-miR-1198 beg:0 end:11 pic:3' GGTTCGGTCGGTCCTTGTGTAT 5'& ||.||||||. &5' ------------GGGACACATG 3' Rab40c mmu-miR-122 beg:36 end:54 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||.| || .|||||| &5' ---ACGC---TGGAGCACTCC- 3' Rab40c mmu-miR-1224 beg:1067 end:1088 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& |||.||||||. | ||||| &5' CTCTACCTCCT--GCCCTCA- 3' Rab40c mmu-miR-1224 beg:939 end:964 pic:3' GAGGTGGAG-GGGTCAGGAGTG 5'& |||| |||| |||||||. .| &5' CTCCTCCTCTCCCAGTCTGGGC 3' Rab40c mmu-miR-125a-5p beg:302 end:323 pic:3' AGTGTCCAATTTCCC-AGAGTCCCT 5'& |||||||| | ||||||| &5' -------TTAAAGGGCTGTCAGGGA 3' Rab40c mmu-miR-125b-5p beg:1081 end:1090 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||||||| &5' --------------CTCAGGG- 3' Rab40c mmu-miR-125b-5p beg:306 end:323 pic:3' AGTGTTCAATCCC-AGAGTCCCT 5'& |||| | ||||||| &5' ---------AGGGCTGTCAGGGA 3' Rab40c mmu-miR-130bstar beg:365 end:385 pic:3' TCATC-ACGTTGTCCCTTTCTCA 5'& .| ||. |||||||.||| &5' ---GGATGT--CAGGGAAGGAG- 3' Rab40c mmu-miR-130bstar beg:137 end:154 pic:3' TCATCACGTTGTC-CCTTTCTCA 5'& || .|| |||..||| &5' ------GC--TAGTGGAGGGAG- 3' Rab40c mmu-miR-133a beg:197 end:219 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& |||||| |||||||.. &5' --GCTGGTGCTACGGGACCAGG 3' Rab40c mmu-miR-133b beg:196 end:219 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& |||||| |||||||.. &5' --GCTGGTGCTACGGGACCAGG 3' Rab40c mmu-miR-135a beg:903 end:923 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& .|| .|||||||. &5' --GCAACTTGT---GAAGCCATG 3' Rab40c mmu-miR-135b beg:903 end:923 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& .|| || .|||||||. &5' --GCAACT---TGTGAAGCCATG 3' Rab40c mmu-miR-138 beg:1180 end:1201 pic:3' GCCGGACTAA--GTGTTGTGGTCGA 5'& |||.| |.| .|.||||| &5' ----CTGGTAGACGCTGCGCCAGC- 3' Rab40c mmu-miR-139-5p beg:1434 end:1454 pic:3' GACCTCTGTGCACG-TGACATCT 5'& |||| ||| .||||.|| &5' ------ACACTTGCTGCTGTGGA 3' Rab40c mmu-miR-145 beg:227 end:248 pic:3' TCCCTAAGGACCCT---TTTGACCTG 5'& |||||| |.|||||| &5' ------TCCTGGACTCCAGACTGGA- 3' Rab40c mmu-miR-145 beg:26 end:47 pic:3' TCCCTAAGGACCCTTT---TGACCTG 5'& |.||||. .||||| &5' -------CTTGGGGCTTACGCTGGA- 3' Rab40c mmu-miR-145star beg:70 end:87 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& .| ||.| |||||| &5' -----GCTGTGTG--CAGGAA- 3' Rab40c mmu-miR-146a beg:1461 end:1482 pic:3' TTGGGTACCTTAAGT--CAAGAGT 5'& .|| ||| ||| |||||.| &5' --TCC-TGG--TTCTTTGTTCTTA 3' Rab40c mmu-miR-146b beg:1461 end:1482 pic:3' TCGGATACCTTAAGT--CAAGAGT 5'& |||. .||| |||||.| &5' --CCTG----GTTCTTTGTTCTTA 3' Rab40c mmu-miR-146bstar beg:870 end:892 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||| |.| |||.||||| &5' ACCA-AGCCCC-TCCTTAGGG- 3' Rab40c mmu-miR-149 beg:407 end:425 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |||| || ||||||| &5' ---AGTGTTGA-----AGCCAGA 3' Rab40c mmu-miR-15a beg:1427 end:1449 pic:3' GTGTT-TGGTAATACACGACGAT 5'& ||| ||.| |||||||. &5' --CAACACTACACT-TGCTGCTG 3' Rab40c mmu-miR-15a beg:1332 end:1354 pic:3' GTGTTTGGTAAT-AC-ACGACGAT 5'& |||| || |||||.|. &5' -----ACCAGTCCTGTTGCTGTTG 3' Rab40c mmu-miR-15b beg:1431 end:1449 pic:3' ACATTTGGTACTACACGACGAT 5'& ||.| |||||||. &5' -----ACTACACT-TGCTGCTG 3' Rab40c mmu-miR-15b beg:1332 end:1354 pic:3' ACATTTGGTACT-AC-ACGACGAT 5'& |||| || |||||.|. &5' -----ACCAGTCCTGTTGCTGTTG 3' Rab40c mmu-miR-15b beg:1192 end:1209 pic:3' ACATTTGGTACTACACGACGAT 5'& .||| |||||.| &5' -----GCCAGCC--TGCTGTT- 3' Rab40c mmu-miR-16 beg:1191 end:1209 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||||| .| |||||.| &5' CGCCA------GCCTGCTGTT- 3' Rab40c mmu-miR-16 beg:1333 end:1354 pic:3' GCGGTTATAAATGCACGACGAT 5'& |||.| |||||.|. &5' --CCAGTCCTGT--TGCTGTTG 3' Rab40c mmu-miR-16 beg:1436 end:1449 pic:3' GCGGTTATAAATGCACGACGAT 5'& || |||||||. &5' -----------ACTTGCTGCTG 3' Rab40c mmu-miR-1839-5p beg:1056 end:1078 pic:3' GTTCTGGACAA-GAT---AGATGGAA 5'& ||| || ||||||| &5' ------CTGGTGCTTAACTCTACCT- 3' Rab40c mmu-miR-186star beg:16 end:37 pic:3' GGGTTTTTTAAGTG-GAATCCCG 5'& || .|||| |||.|||| &5' -CCT----GTTCAGACTTGGGGC 3' Rab40c mmu-miR-187 beg:1041 end:1059 pic:3' GGCCGACGTTGTGT-TCTGTGCT 5'& ||.| | ||.|||| &5' -------CAGCCCTCAGGCACG- 3' Rab40c mmu-miR-188-3p beg:693 end:716 pic:3' ACGTTTG-GG-ACGTACACCCTC 5'& ||...| || ||||| |||| &5' -GCGGGCTCCGTGCATCTGGG-- 3' Rab40c mmu-miR-18a beg:1129 end:1161 pic:3' GATAGACGTGA-------TCTACGTGGAAT 5'& ||| ||||| |||| ||.|||| &5' CTAAGTGCACGTTTCCTAAGAT-CATCTTA 3' Rab40c mmu-miR-1903 beg:134 end:155 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& ||| || || .||.|.||| &5' --TCTGAGCTAGTGGAGGGAGG 3' Rab40c mmu-miR-1904 beg:172 end:198 pic:3' GGAGG-GA--GGTCTCCTCGTCTTG 5'& |||| | |||| | |||||..| &5' -CTCCGCAAACCAG-GCAGCAGGGC 3' Rab40c mmu-miR-1906 beg:1186 end:1208 pic:3' TCGGGACGGAGTCCGACGACGT 5'& | |||| ||| ||||||. &5' --CGCTGCGCCAGCCTGCTGT- 3' Rab40c mmu-miR-1907 beg:1330 end:1353 pic:3' TGGAGGTCTAGGA-GACGACGAG 5'& || |||| |||| .|||||.| &5' -CCACCAG-TCCTGTTGCTGTT- 3' Rab40c mmu-miR-1907 beg:441 end:462 pic:3' TGGAGGTCTAGGAG--ACGACGAG 5'& ||| |. ||| ||.||||| &5' ACC-CTG---CCTGGGTGTTGCTC 3' Rab40c mmu-miR-1907 beg:1191 end:1210 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& | |||| | ||||||.|| &5' --CGCCAG---C-CTGCTGTTC 3' Rab40c mmu-miR-1929 beg:224 end:236 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||||||.|| &5' -------------AGTCCTGGA- 3' Rab40c mmu-miR-1935 beg:801 end:816 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||| |.||||||| &5' --------GCC--CTTCTGCCT 3' Rab40c mmu-miR-1937c beg:602 end:611 pic:3' ACCCCCGAGAAGGCCCTA 5'& |.|||| &5' -----------CTGGGA- 3' Rab40c mmu-miR-1937c beg:1276 end:1292 pic:3' ACCCCCGAGAA--GGCCCTA 5'& || || |.|||| &5' -----GC-CTGACCTGGGA- 3' Rab40c mmu-miR-193star beg:567 end:584 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& ||.| | ||||||.| &5' -------GCTC-CTAAGACCTA 3' Rab40c mmu-miR-1944 beg:711 end:729 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& |.||| .||||||.| &5' -----------GGCATG-GGCACAGGG 3' Rab40c mmu-miR-195 beg:1333 end:1354 pic:3' CGGTTATAAAGAC-ACGACGAT 5'& |||.| ||| |||||.|. &5' -CCAGTC---CTGTTGCTGTTG 3' Rab40c mmu-miR-195 beg:1437 end:1449 pic:3' CGGTTATAAAGACACGACGAT 5'& || |||||||. &5' ----------CT-TGCTGCTG 3' Rab40c mmu-miR-1951 beg:1440 end:1463 pic:3' ATCGGTGTGGTCAGAGGTGATG 5'& || | ..| ||||||||. &5' --GCTGCTGTGGACTCCACTAT 3' Rab40c mmu-miR-1952 beg:386 end:404 pic:3' GTCTTCCTC-CCACCTCT 5'& |||| || |||||.|. &5' --GAAGCAGTGGTGGGGG 3' Rab40c mmu-miR-1953 beg:103 end:130 pic:3' GTCTTCGGACTC--------TTGAAAGGGT 5'& |||||.| ..||||||. &5' -----GCCTGGGTCTCTCCAGGCTTTCCT- 3' Rab40c mmu-miR-1954 beg:555 end:579 pic:3' TTGTCCCAGAGT-GAGACGTCA 5'& ..|| |||.||| ||| || &5' GGCAAGGTTTCAGCTCCTAAG- 3' Rab40c mmu-miR-1956 beg:216 end:237 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& | ||| |||.|||||||| &5' ---GGTGAGCCAGTCCTGGACT 3' Rab40c mmu-miR-1960 beg:1170 end:1185 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& |||. .||||||| &5' ---------CTAG-GGCACTGG 3' Rab40c mmu-miR-196astar beg:1334 end:1351 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& ||| || ||||||.| &5' -----CAG--TCCTGTTGCTG- 3' Rab40c mmu-miR-196b beg:1254 end:1269 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& ||.||||.|||. &5' ----------GGGAACTGCCTG 3' Rab40c mmu-miR-1970 beg:1024 end:1046 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& |.| | || |||||||| &5' ----GTCCTTGCCTGGTGACACA 3' Rab40c mmu-miR-1970 beg:842 end:863 pic:3' GTTTCGGATAGGG-GTCACTGTGT 5'& |||.| | .|||||||| &5' -----CCTGTTTCTTAGTGACAC- 3' Rab40c mmu-miR-1971 beg:794 end:819 pic:3' AGAG----TCGGGT---CGGAAATG 5'& ||| .|||| ||||||| &5' -CTCTTGTGGCCCTTCTGCCTTTA- 3' Rab40c mmu-miR-1982.2 beg:207 end:224 pic:3' GACACCCTCTTGTATCCCACT 5'& |||| || .|||||| &5' ----GGGAC--CA-GGGGTGA 3' Rab40c mmu-miR-199a-5p beg:1170 end:1185 pic:3' CTTGTCCATCAGA-CTTGTGACCC 5'& || |..|||||| &5' -----------CTAGGGCACTGG- 3' Rab40c mmu-miR-199bstar beg:29 end:46 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& .|| || ||.|||| &5' ----GGGG---CTT-ACGCTGG- 3' Rab40c mmu-miR-200astar beg:1193 end:1218 pic:3' AGGTCG--TGAC-AGGCCATTCTAC 5'& ||||| .||| ||.|| .|||| &5' -CCAGCCTGCTGTTCTGG-GAGAT- 3' Rab40c mmu-miR-200cstar beg:434 end:460 pic:3' GGTTTGTG--AC-GACCCATTCTGC 5'& .|||.|| || ||||||. .| &5' -TAAATACCCTGCCTGGGTGTTGC- 3' Rab40c mmu-miR-203 beg:272 end:290 pic:3' GATCACCAGGATTTGTAAAGTG 5'& ||| .|||||||.|| &5' ----TGGA---GAACATTTTAC 3' Rab40c mmu-miR-20a beg:841 end:864 pic:3' GATGGACGT-GA--TATTCGTGAAAT 5'& |||||. || .|.| |||| &5' --ACCTGTTTCTTAGTGA-CACT--- 3' Rab40c mmu-miR-20a beg:284 end:306 pic:3' GATGGACGTGATATTCGTGAAAT 5'& ||||||. .|.|| ||.||| &5' -TACCTGTTTTGTA--CATTTT- 3' Rab40c mmu-miR-211 beg:360 end:388 pic:3' TCCGTTTCCTACTGT------TTCCCTT 5'& || |||||| || .||||| &5' --GCTCAGGATGTCAGGGAAGGAGGGA- 3' Rab40c mmu-miR-212 beg:910 end:931 pic:3' ACCGGCACTGACC--TCTGACAAT 5'& .|||| .||||||| &5' ----TGTGAAGCCATGGACTGTT- 3' Rab40c mmu-miR-2132 beg:1425 end:1446 pic:3' GTAGCGCAGTTGTGGGCGG 5'& |||| ||||..||. &5' CATCAACACTACACTTGCT 3' Rab40c mmu-miR-2134 beg:1133 end:1154 pic:3' CGTGGGGCAAAGGGTTCTG 5'& | | |||||||.||||. &5' GTGCA-CGTTTCCTAAGAT 3' Rab40c mmu-miR-2139 beg:176 end:202 pic:3' CGTCAATGGTCC-TCGTCGCGTCGA 5'& ||| |||||| ||||| || ||| &5' GCAA--ACCAGGCAGCAGGGCTGCT 3' Rab40c mmu-miR-2141 beg:1061 end:1081 pic:3' TTGAAAAGACTGTGGAGGA 5'& .||| || .||||||| &5' -GCTTAACTC-TACCTCCT 3' Rab40c mmu-miR-2145 beg:249 end:266 pic:3' TTGGTCCGGGCTGGGACGA 5'& |.||||||.| |||| &5' AGCCAGGCTC--CCCT--- 3' Rab40c mmu-miR-214star beg:1486 end:1511 pic:3' CGTGTCGTTCACATCT-GTCCGT 5'& |.||||.|| |||| || ||| &5' GTACAGTAAATGTACTTCA-GCA 3' Rab40c mmu-miR-218-2star beg:1092 end:1114 pic:3' GCGCCACGAACTGTCTTGGTAC 5'& || .||.||||| &5' ---GGCCATAACAGGAGCCATG 3' Rab40c mmu-miR-219 beg:1298 end:1319 pic:3' TCTTAACGCAAACC-TGTTAGT 5'& ||| || || ||||||| &5' AGAG--GCTG--GGTACAATCA 3' Rab40c mmu-miR-21star beg:1334 end:1354 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& |||.|| .| .|||||||| &5' --CAGTCC--TG-TTGCTGTTG 3' Rab40c mmu-miR-21star beg:1187 end:1209 pic:3' CTGTCG-GGTAGCTGACGACAAC 5'& .| || ||| |||||||| &5' -GCTGCGCCAGC--CTGCTGTT- 3' Rab40c mmu-miR-22star beg:272 end:283 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& ||.||||| &5' -------------TGGAGAAC- 3' Rab40c mmu-miR-24 beg:208 end:227 pic:3' GACAAGGACGACTTGACTCGGT 5'& | || |.. ||||||| &5' --GGACCA---GGGGTGAGCCA 3' Rab40c mmu-miR-2861 beg:240 end:263 pic:3' GGCGGGCGG-CGGTCCGGGG 5'& |.| |. |||||||.|| &5' CTGGAAGTGAGCCAGGCTCC 3' Rab40c mmu-miR-2861 beg:1072 end:1094 pic:3' GGCGGGCGGCGGTCCGGGG 5'& || ||.||| .|||| ||| &5' CCTCCTGCCCTCAGGGCCC 3' Rab40c mmu-miR-293star beg:1380 end:1402 pic:3' GTTTTACAGTGTGTCAAACTCA 5'& .|.|||| .|.| | |||||| &5' TAGAATGGTATAGACTTTGAG- 3' Rab40c mmu-miR-29a beg:1047 end:1067 pic:3' ATTGGCTAAAGTCT-----ACCACGAT 5'& ||||. ||||||| &5' ---------TCAGGCACGCTGGTGCT- 3' Rab40c mmu-miR-29c beg:1047 end:1067 pic:3' ATTGGCTAAAGTTT-----ACCACGAT 5'& |||.. ||||||| &5' ---------TCAGGCACGCTGGTGCT- 3' Rab40c mmu-miR-302cstar beg:400 end:421 pic:3' CGTCCATTGGGGTACAATTTCG 5'& | .||| | .||||.|||| &5' GGGGGTTTCA--GTGTTGAAGC 3' Rab40c mmu-miR-3099 beg:890 end:905 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& ||| ||.||||. &5' ----------CTCACTGGCCTG 3' Rab40c mmu-miR-30a beg:641 end:661 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& |||.|||| ||||||||| &5' CTTTCAGT----GATGTTTAC- 3' Rab40c mmu-miR-30astar beg:228 end:250 pic:3' CGACGTTTGTAGG-CTGACTTTC 5'& ||| .|| ||| |||||.||| &5' -CTG--GAC-TCCAGACTGGAAG 3' Rab40c mmu-miR-30b beg:637 end:661 pic:3' TCGACTCACATC-CTACAAATGT 5'& .|| || ||||||||| &5' GGCCCTTTC-AGTGATGTTTAC- 3' Rab40c mmu-miR-30c beg:646 end:661 pic:3' CGACTCTCACATC-CTACAAATGT 5'& || ||||||||| &5' -----------AGTGATGTTTAC- 3' Rab40c mmu-miR-30c-1star beg:943 end:957 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .|||||||||| &5' -----------TCCTCTCCCAG 3' Rab40c mmu-miR-30c-2star beg:938 end:957 pic:3' TCTCATTTGTCGGA--AGAGGGTC 5'& .| ||| |||||||| &5' -------GCT-CCTCCTCTCCCAG 3' Rab40c mmu-miR-30c-2star beg:961 end:980 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |...|||||||||||| &5' ----TGGGCAGCCTTCTCCC-- 3' Rab40c mmu-miR-30d beg:641 end:661 pic:3' GAAGGTCAGCCCCTACAAATGT 5'& |||.|||| ||||||||| &5' CTTTCAGT----GATGTTTAC- 3' Rab40c mmu-miR-30e beg:641 end:661 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |||.|||| ||||||||| &5' CTTTCAGT----GATGTTTAC- 3' Rab40c mmu-miR-30estar beg:229 end:250 pic:3' CGACATTTGTAGG-CTGACTTTC 5'& |..|| ||| |||||.||| &5' ----TGGAC-TCCAGACTGGAAG 3' Rab40c mmu-miR-322 beg:1427 end:1449 pic:3' AGGTTTTGTACTTAACGACGAC 5'& .||| || ||||||||| &5' -TCAACACTACACTTGCTGCTG 3' Rab40c mmu-miR-322 beg:1333 end:1354 pic:3' AGGTTTTGTACTTAACGACGAC 5'& |||. | .||||||.|| &5' -CCAGTCCT---GTTGCTGTTG 3' Rab40c mmu-miR-323-3p beg:637 end:657 pic:3' TCTCCAGCTGGCA----CATTACAC 5'& .|.|| ||.|||| &5' ------TGGCCCTTTCAGTGATGT- 3' Rab40c mmu-miR-324-5p beg:1219 end:1244 pic:3' TGTGGTTACGGG-ATCCC-CTACGC 5'& .|||||||. ||||| |. || &5' ---TCAATGCCTGTAGGGAGGGACG 3' Rab40c mmu-miR-326 beg:446 end:467 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||||. | ||.|||||| &5' -CTGGGTGTT--GCTCAGAGG 3' Rab40c mmu-miR-327 beg:1072 end:1090 pic:3' TAGGAGTACGGGGAGTTCA 5'& |||| || ||||||.| &5' --CCTCCTG-CCCTCAGG- 3' Rab40c mmu-miR-331-5p beg:508 end:531 pic:3' CCTAGGGACCCT-GGTATGGATC 5'& |. || || |||||.||. &5' -GGCTCC-GGCTTCCATATCTG- 3' Rab40c mmu-miR-342-5p beg:37 end:55 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& |.| |. |||||.||| &5' ------CGCTGG-AGCACTCCT 3' Rab40c mmu-miR-343 beg:132 end:155 pic:3' AGACCCGTGTACTTCCCTCT 5'& |||| || .||.||||||. &5' TCTGAGCTAGTGGAGGGAGG 3' Rab40c mmu-miR-3470a beg:669 end:690 pic:3' GGTCGGA-CCAGATGTTTCACT 5'& |||||| || |||||.|| &5' CCAGCCGGGG-CTACAGAG--- 3' Rab40c mmu-miR-3470b beg:669 end:690 pic:3' GGTCGGA-CCAGATGTCTCACT 5'& |||||| || |||||||| &5' CCAGCCGGGG-CTACAGAG--- 3' Rab40c mmu-miR-3471 beg:102 end:117 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||| |||.|||| &5' --TGCC-------TGGGTCTC- 3' Rab40c mmu-miR-3475 beg:656 end:676 pic:3' AAGTTTGGTACAC--GGAGGTCT 5'& ||.|| .|||||| &5' -----ACTATACACATCTCCAG- 3' Rab40c mmu-miR-351 beg:1073 end:1090 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& ||| || |||||||| &5' ----CTCCT---GC-CCTCAGGG- 3' Rab40c mmu-miR-351 beg:360 end:380 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& ||||| || . ||||||| &5' ---GCTCA---GGA-TGTCAGGGA 3' Rab40c mmu-miR-361 beg:1019 end:1042 pic:3' CATGGGGACCTCTAA-GACTATT 5'& .||||| |||.|.| &5' ---TCCCTGTCCTTGCCTGGTGA 3' Rab40c mmu-miR-376b beg:996 end:1017 pic:3' TTCACCTACAAGGAGATACTA 5'& |||||||| |||| |.||| &5' -AGTGGATG-TCCTGTGTGA- 3' Rab40c mmu-miR-378 beg:803 end:825 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& ||||||| ||..||||.|| &5' CCTTCTGCCTTTAAGTTCA-- 3' Rab40c mmu-miR-432 beg:101 end:123 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& |||||. |.||| |||||.| &5' CTGCCTG--GGTCT-CTCCAGG- 3' Rab40c mmu-miR-450a-3p beg:664 end:676 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||||.|||. &5' ------------CATCTCCAG- 3' Rab40c mmu-miR-455 beg:909 end:930 pic:3' CACATATACGGGCACCTGACG 5'& |||. ||| |||||||. &5' -TGTGAA-GCCA-TGGACTGT 3' Rab40c mmu-miR-466c-5p beg:650 end:671 pic:3' ATACATGTACGT---GTGTGTGTAG 5'& |||. .|.||||||| &5' -------ATGTTTACTATACACATC 3' Rab40c mmu-miR-469 beg:133 end:159 pic:3' CCTGTGGTTC---TAGTTACTTTCTCCGT 5'& | || .| .| | ||.|||| &5' -----CTGAGCTAGTGGA-GGGAGGGGCA 3' Rab40c mmu-miR-484 beg:1273 end:1285 pic:3' TAGCCCTCCCCTGAC-TCGGACT 5'& | ||||||| &5' --------------GCAGCCTGA 3' Rab40c mmu-miR-486 beg:70 end:86 pic:3' GAGCCCCGTCGAGTCATGTCCT 5'& ||| ||.||||| &5' ---------GCTGTGTGCAGGA 3' Rab40c mmu-miR-493 beg:1031 end:1052 pic:3' GGACCG-TGTGTCATCCTGGAAGT 5'& |||||. |||||| || ||| &5' CCTGGTGACACAG-----CCCTCA 3' Rab40c mmu-miR-493 beg:1347 end:1366 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||| . |||| ||||||. &5' -CTGTTG-ACAGA--GACCTTT- 3' Rab40c mmu-miR-497 beg:1190 end:1209 pic:3' ATGTTTGGTGTCACACGACGAC 5'& .| ||| |||||.| &5' -----GCGCCAGCCTGCTGTT- 3' Rab40c mmu-miR-497 beg:1332 end:1354 pic:3' ATGTTTGGT-GTCAC-ACGACGAC 5'& ||| |||| ||.||||| &5' ------CCACCAGTCCTGTTGCTG 3' Rab40c mmu-miR-497 beg:1427 end:1449 pic:3' ATGTT-TGGTGTCACACGACGAC 5'& ||| ||.||| |||||||| &5' --CAACACTACACT-TGCTGCTG 3' Rab40c mmu-miR-497 beg:439 end:461 pic:3' ATGTT-TGGTGTCACACGACGAC 5'& ||| .|| ..| |||.|||| &5' TACCCTGCC-TGG-GTGTTGCT- 3' Rab40c mmu-miR-501-5p beg:370 end:389 pic:3' AAAGTGGGTCCCTG-TTTCCTAA 5'& .|||||| .|.|||| &5' ------TCAGGGAAGGAGGGAT- 3' Rab40c mmu-miR-503 beg:1431 end:1449 pic:3' GACGTCATGACAAGGGCGACGAT 5'& ||| |..||||||. &5' -------ACTACACTTGCTGCTG 3' Rab40c mmu-miR-505 beg:1338 end:1356 pic:3' TCTTTTGGTCGTTCACAACTGC 5'& || |. ||||||| &5' ------CCTGTTGCTGTTGAC- 3' Rab40c mmu-miR-532-5p beg:146 end:161 pic:3' TGCCAGGATGTGAGTTCCGTAC 5'& || ..|||||| &5' --GGGA--------GGGGCATG 3' Rab40c mmu-miR-541 beg:819 end:842 pic:3' TCACACTGGTT--GTAGTCTTAGGGAA 5'& | || || .||||||.||| &5' -----GTTCATGTCACTAGAATCTCTT 3' Rab40c mmu-miR-592 beg:1025 end:1047 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& .|| |.|| |. |||||||. &5' --GTCCTTGCCTGGTGACACAG- 3' Rab40c mmu-miR-615-5p beg:1113 end:1134 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& || | ||.|||||||.|. &5' ---CCCTG-ACTGGGGACCTCT 3' Rab40c mmu-miR-665 beg:1448 end:1470 pic:3' TCCCTGGAGTCG-GAGGACCA 5'& |||| || .||||||| &5' --GGACTCCACTATTCCTGGT 3' Rab40c mmu-miR-668 beg:1026 end:1044 pic:3' CCATCACCCGGCTCGGCTCACTGT 5'& || ||| .|||||| &5' ---------CCTTGCCTGGTGACA 3' Rab40c mmu-miR-670 beg:360 end:380 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .|. || ||||||| &5' ---GCT-CAGGATGTCAGGGA- 3' Rab40c mmu-miR-671-5p beg:871 end:899 pic:3' GAGG-TCGGGGAGG--TCCC-GAAGGA 5'& || ||||||||| |||| || || &5' --CCAAGCCCCTCCTTAGGGACTCACT 3' Rab40c mmu-miR-673-3p beg:1352 end:1374 pic:3' CCAC-GTGTCTTGAGTCGGGGCCT 5'& | || ||| ||. |.|.||| &5' ---GACAGAGACCTTTTCTCTGGA 3' Rab40c mmu-miR-673-3p beg:214 end:236 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& || |. ||.| |||.||.||| &5' GGGGT---GAGC-CAGTCCTGGA 3' Rab40c mmu-miR-673-3p beg:632 end:642 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||||.|| &5' ---------------GCCCTGG- 3' Rab40c mmu-miR-673-5p beg:1436 end:1452 pic:3' GAGGTTCCTGGTCT-CGACACTC 5'& ||. ||||||. &5' --------ACTTGCTGCTGTGG- 3' Rab40c mmu-miR-674 beg:631 end:653 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& |.| || ||| |.|||||| &5' TGC-CCTGGCCC-TTTCAGTG- 3' Rab40c mmu-miR-675-3p beg:144 end:163 pic:3' TGACTCGCCAATCCCGTATGTC 5'& ||| || .||||||.||| &5' ---GAG-GGA-GGGGCATGCAG 3' Rab40c mmu-miR-676 beg:351 end:373 pic:3' TCGAGTTGTTGGAGTCCTGCC 5'& |.| .. || |||||||.| &5' -GTTGGGGAAGCTCAGGATG- 3' Rab40c mmu-miR-678 beg:1274 end:1292 pic:3' GGAGGTCAGGAACGTGGCTCTG 5'& ||| ||| | |.|.|| &5' ----CAG-CCTGAC-CTGGGA- 3' Rab40c mmu-miR-678 beg:1017 end:1043 pic:3' GGAGGT-CAGGAACGTGGCT-CTG 5'& |.||| |||||||| |.|. ||| &5' CTTCCCTGTCCTTGC-CTGGTGAC 3' Rab40c mmu-miR-680 beg:356 end:375 pic:3' GGGGGTACAGTCG---TCTACGGG 5'& | ||| .||||.| &5' -------GGAAGCTCAGGATGTC- 3' Rab40c mmu-miR-681 beg:1223 end:1249 pic:3' TCGACGGACGG-----TC-GCTCCGAC 5'& ||||||. .| ||.|||| &5' ---TGCCTGTAGGGAGGGACGGGGCT- 3' Rab40c mmu-miR-681 beg:666 end:684 pic:3' TCGACGGACGGTC-GCTCCGAC 5'& .|| |||| ||.|||| &5' -----TCT-CCAGCCGGGGCT- 3' Rab40c mmu-miR-683 beg:487 end:508 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& ||..| || .||||||| &5' ---GATGCTTCTAGCAGCAGG 3' Rab40c mmu-miR-683 beg:175 end:196 pic:3' CTCCTGTGTCGAA--TGTCGTCC 5'& |.|| .||||||| &5' -----CGCAAACCAGGCAGCAGG 3' Rab40c mmu-miR-689 beg:1110 end:1130 pic:3' CCTGGGGCGGCTCGCCCCTGC 5'& |||||| .|| .|||||| &5' -GACCCC--TGACTGGGGAC- 3' Rab40c mmu-miR-691 beg:68 end:87 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& ||||. |||||| &5' ----CTGCTGTGTG-CAGGAA- 3' Rab40c mmu-miR-698 beg:1230 end:1247 pic:3' TCCCTTCCTTTGCTCTTAC 5'& |||||.||| ||.|. &5' AGGGAGGGA--CGGGG--- 3' Rab40c mmu-miR-698 beg:145 end:166 pic:3' TCCCTTCCTTTGC-TCTTAC 5'& |||||.||. |.| ||.| &5' AGGGAGGGGCATGCAGGA-- 3' Rab40c mmu-miR-705 beg:1060 end:1084 pic:3' ACGGG-TGGGGTGGAGGGTGG 5'& |||.. ||.|.|||||| || &5' TGCTTAACTCTACCTCCTGCC 3' Rab40c mmu-miR-708 beg:555 end:576 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& .|| ||.|| ||||||| &5' ---GGCAAGGTTTC-AGCTCCT- 3' Rab40c mmu-miR-710 beg:12 end:34 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& || .| || ..| |||||||| &5' -TCCGC-CTGTTC-AGACTTGG 3' Rab40c mmu-miR-710 beg:491 end:513 pic:3' GAGTTGAGAGGGGT----TCTGAACC 5'& ||.|. ||.||||| &5' -------CTTCTAGCAGCAGGCTTGG 3' Rab40c mmu-miR-711 beg:95 end:117 pic:3' GAATGTAGAGAGGGGCCCAGGG 5'& ||| | || ||.|||||.| &5' ---ACAACCCTGCCTGGGTCTC 3' Rab40c mmu-miR-713 beg:395 end:415 pic:3' CGACACA--CGGAAGTCACGT 5'& ||| | .|||||||. &5' ---GTGGGGGGTTTCAGTGT- 3' Rab40c mmu-miR-743b-5p beg:887 end:909 pic:3' ACTACCTG--TGGTCAGACTTGT 5'& |||| || | ||||.|| &5' ----GGACTCACTGGCCTGAGCA 3' Rab40c mmu-miR-743b-5p beg:950 end:964 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||||||||..| &5' ---------CCAGTCTGGGC- 3' Rab40c mmu-miR-744 beg:58 end:75 pic:3' ACGACAATCGGGAT-CGGGGCGT 5'& || ||| ||||.|| &5' --------GCGCTAGGCCCTGC- 3' Rab40c mmu-miR-744 beg:160 end:182 pic:3' ACGACAA-TCGGGATCGGGGCGT 5'& | || | ||.||||| &5' ----GGAGAGAACATGCTCCGCA 3' Rab40c mmu-miR-760 beg:332 end:355 pic:3' AGGGGTGTCTGG-GTC-TCGGC 5'& ||.||.|| || || ||||| &5' -CCTCATAG-CCACATCAGCCG 3' Rab40c mmu-miR-760 beg:1327 end:1351 pic:3' AGGGGT-GTCTGGGTCTCGGC 5'& |||||| ||| ||.. ||.| &5' TCCCCACCAGTCCTGTTGCTG 3' Rab40c mmu-miR-761 beg:1426 end:1448 pic:3' ACACAGTCAAAGTG-GGACGACG 5'& ||| .|| |.|||||| &5' ----TCAACACTACACTTGCTGC 3' Rab40c mmu-miR-761 beg:1334 end:1349 pic:3' ACACAGTCAAAGTGGGACGACG 5'& |||| ||||.||| &5' -----CAGT-----CCTGTTGC 3' Rab40c mmu-miR-762 beg:1186 end:1203 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& | | || ||||||. &5' -------CGCTGCGCCAGCCT- 3' Rab40c mmu-miR-802 beg:1335 end:1351 pic:3' TTCCTACTTAGAAACAATGACT 5'& |.|| ||||.||| &5' -------AGTCC-TGTTGCTG- 3' Rab40c mmu-miR-92astar beg:1317 end:1338 pic:3' CATTACG--GTGGTTAGGGGTGGA 5'& || |||| |||||||| &5' -----GCATCACCTTTCCCCACC- 3' Rab40c mmu-miR-93 beg:1029 end:1051 pic:3' GATGGACGTGCT-TGTCGTGAAAC 5'& |.|||| ..|| ||||| || &5' -TGCCTG-GTGACACAGCCCT--- 3' Rab40c mmu-miR-93star beg:1496 end:1513 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& ||. .|||||||| &5' -------TGTAC-TTCAGCAGT 3' Rab40c mmu-miR-98 beg:1058 end:1079 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ..|.| ||||||| &5' ---GGTGCTTAACTCTACCTC- 3' Rab40c mmu-miR-1932 beg:165 end:183 pic:3' GGCTGGATCGCGACAGGCGTTG 5'& || || ||||||| &5' --GAACATGC----TCCGCAA- 3' Rab40c mmu-miR-185 beg:101 end:121 pic:3' AGTCCTTGACGGAA--AGAGAGGT 5'& |||||| |||||||| &5' -------CTGCCTGGGTCTCTCCA 3' Rab40c mmu-miR-882 beg:102 end:120 pic:3' TGATTACGCGATTGAGAGAGGA 5'& ||| ||.. ||||||| &5' -----TGC-CTGGGTCTCTCC- 3' Rab40c mmu-miR-24 beg:228 end:257 pic:3' GACA--AGGAC-GACTTG-ACTCGGT 5'& ||| ||| | |||.| ||||||| &5' CTGGACTCCAGACTGGAAGTGAGCCA 3' Rab40c mmu-miR-466h beg:1409 end:1427 pic:3' ATGTGTGTTCG--TGTACGTGTGT 5'& .|| .|.||||||| &5' --------GGCCTGCGTGCACAC- 3' Rab40c mmu-miR-1949 beg:1374 end:1394 pic:3' TTGATACGACTGTAGGACCATATC 5'& || ||.| |||||||| &5' ------GC-GATAGAATGGTATAG 3' Rab40c mmu-miR-377 beg:999 end:1017 pic:3' TGTTTTCAACGGAAACACACTA 5'& .| ||.| ||||||| &5' -----GGATGTCC-TGTGTGA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rab40c RAID00023213 mmu-miR-185-5p miRNA MIMAT0000214 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00040513 mmu-miR-28a-5p miRNA MIMAT0000653 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00185868 mmu-miR-15a-5p miRNA MIMAT0000526 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID00245110 mmu-miR-383-3p miRNA MIMAT0017082 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00274619 mmu-miR-421-3p miRNA MIMAT0004869 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00347018 mmu-miR-6952-5p miRNA MIMAT0027804 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00379428 mmu-miR-27b-3p miRNA MIMAT0000126 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00401361 mmu-miR-212-3p miRNA MIMAT0000659 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00488752 mmu-let-7g-5p miRNA MIMAT0000121 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID00490342 mmu-miR-15b-5p miRNA MIMAT0000124 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID00513659 mmu-miR-708-5p miRNA MIMAT0004828 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00550652 mmu-miR-30e-5p miRNA MIMAT0000248 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00589198 mmu-miR-107-3p miRNA MIMAT0000647 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00603626 mmu-miR-322-5p miRNA MIMAT0000548 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID00644224 mmu-miR-142a-3p miRNA MIMAT0000155 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6559 Rab40c RAID00699340 mmu-miR-30b-5p miRNA MIMAT0000130 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00795802 mmu-miR-448-5p miRNA MIMAT0017176 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID00824228 mmu-miR-6972-3p miRNA MIMAT0027847 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01006780 mmu-miR-466l-3p miRNA MIMAT0005830 Rab40c mRNA 224624 Prediction 0.2202 Rab40c RAID01129160 mmu-miR-466b-5p miRNA MIMAT0004875 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01160148 mmu-miR-6921-5p miRNA MIMAT0027742 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01180437 mmu-let-7g-3p miRNA MIMAT0004519 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01234414 mmu-miR-1964-5p miRNA MIMAT0017349 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01254648 mmu-miR-204-5p miRNA MIMAT0000237 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01393683 mmu-let-7c-5p miRNA MIMAT0000523 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID01418997 mmu-miR-1264-5p miRNA MIMAT0014802 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01567708 mmu-miR-1961 miRNA MIMAT0009434 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID01572836 mmu-miR-141-3p miRNA MIMAT0000153 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01709924 mmu-miR-16-5p miRNA MIMAT0000527 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID01743822 mmu-miR-29c-3p miRNA MIMAT0000536 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID01825023 mmu-miR-3087-5p miRNA MIMAT0014895 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01884404 mmu-miR-6360 miRNA MIMAT0025103 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01914078 mmu-miR-6392-3p miRNA MIMAT0025142 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID01936281 mmu-miR-194-5p miRNA MIMAT0000224 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02031485 mmu-miR-214-3p miRNA MIMAT0000661 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6308 Rab40c RAID02042780 mmu-miR-186-3p miRNA MIMAT0004540 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02074417 mmu-miR-30d-5p miRNA MIMAT0000515 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02166822 mmu-miR-200a-3p miRNA MIMAT0000519 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02231066 mmu-miR-615-5p miRNA MIMAT0004837 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02248101 mmu-miR-196b-5p miRNA MIMAT0001081 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6308 Rab40c RAID02361413 mmu-miR-27a-3p miRNA MIMAT0000537 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02376488 mmu-let-7b-5p miRNA MIMAT0000522 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID02447095 mmu-miR-6353 miRNA MIMAT0025096 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02651755 mmu-miR-103-3p miRNA MIMAT0000546 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6308 Rab40c RAID02700134 mmu-miR-30a-5p miRNA MIMAT0000128 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02738275 mmu-miR-1907 miRNA MIMAT0007876 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02853809 mmu-let-7d-5p miRNA MIMAT0000383 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID02860638 mmu-miR-6342 miRNA MIMAT0025085 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID02948323 mmu-miR-195a-5p miRNA MIMAT0000225 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID02991660 mmu-miR-149-5p miRNA MIMAT0000159 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03019830 mmu-let-7f-5p miRNA MIMAT0000525 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID03061061 mmu-miR-30c-5p miRNA MIMAT0000514 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03118157 mmu-miR-7218-5p miRNA MIMAT0028404 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03134077 mmu-miR-29a-3p miRNA MIMAT0000535 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03149600 mmu-let-7i-5p miRNA MIMAT0000122 Rab40c mRNA 224624 Prediction 0.2202 Rab40c RAID03153626 mmu-miR-132-3p miRNA MIMAT0000144 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03160435 mmu-miR-7003-5p miRNA MIMAT0027910 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03161012 mmu-miR-211-5p miRNA MIMAT0000668 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03241869 mmu-miR-423-5p miRNA MIMAT0004825 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03300285 mmu-let-7c-1-3p miRNA MIMAT0004622 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03330156 mmu-miR-384-5p miRNA MIMAT0004745 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03376498 mmu-let-7a-5p miRNA MIMAT0000521 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID03417929 mmu-miR-29b-3p miRNA MIMAT0000127 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6308 Rab40c RAID03477171 mmu-miR-92a-2-5p miRNA MIMAT0004635 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03562749 mmu-miR-466c-5p miRNA MIMAT0004877 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03640690 mmu-miR-497a-5p miRNA MIMAT0003453 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID03653356 mmu-miR-466o-5p miRNA MIMAT0014885 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03662717 mmu-miR-6419 miRNA MIMAT0025175 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03672668 mmu-miR-196a-5p miRNA MIMAT0000518 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6308 Rab40c RAID03790770 mmu-miR-5112 miRNA MIMAT0020620 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03831432 mmu-miR-98-5p miRNA MIMAT0000545 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6559 Rab40c RAID03841663 mmu-miR-505-3p miRNA MIMAT0003513 Rab40c mRNA 224624 Prediction 0.1828 Rab40c RAID03945951 mmu-miR-491-5p miRNA MIMAT0003486 Rab40c mRNA 224624 Prediction 0.2202 Rab40c RAID04040887 mmu-let-7e-5p miRNA MIMAT0000524 Rab40c mRNA 224624 CLIP-seq//Prediction 0.6478 Rab40c RAID04047141 mmu-miR-195b miRNA MIMAT0025076 Rab40c mRNA 224624 Prediction 0.1828