DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000143 mmu-miR-9* 15239 Hgs ugaaagCCAAUAGAUCGAAAUa || || ||||||| cagcaaGGGUA-GAAGCUUUAg 2 17 387 407 [mm9:11:120345200-120345220:+] 0.5069 142 7 -8.71 -0.2348 MIMAT0000143 mmu-miR-9* 15239 Hgs ugaaagCCAAUAGAUCGAAAUa || || ||||||| cagcaaGGGUA-GAAGCUUUAg 2 17 686 706 [mm9:11:120345200-120345220:+] 0.5069 142 7 -8.71 -0.1985 MIMAT0004542 mmu-miR-191* 15239 Hgs ccCUUGC--UUUAGGUUCACGUCg |:|:| | ||: ||||||| uuGGAUGUCAUCUCUCAGUGCAGa 2 21 430 453 [mm9:11:120345243-120345266:+] 0.5532 151 7 -19.73 -0.6647 MIMAT0004542 mmu-miR-191* 15239 Hgs ccCUUGC--UUUAGGUUCACGUCg |:|:| | ||: ||||||| uuGGAUGUCAUCUCUCAGUGCAGa 2 21 729 752 [mm9:11:120345243-120345266:+] 0.5532 151 7 -19.73 -0.5952 MIMAT0000230 mmu-miR-199a-3p 15239 Hgs auuGGUUACACGUCUGA-UGACa |::||||| | ||| |||| aguCUGAUGUG-A-ACUAACUGu 2 20 315 335 [mm9:11:120345128-120345148:+] 0.4938 123 0 -16.99 -0.1348 MIMAT0000230 mmu-miR-199a-3p 15239 Hgs auuGGUUACACGUCUGA-UGACa |::||||| | ||| |||| aguCUGAUGUG-A-ACUAACUGu 2 20 614 634 [mm9:11:120345128-120345148:+] 0.4938 123 0 -16.99 -0.1130 MIMAT0000375 mmu-miR-297a 15239 Hgs ugUACGUGUACGUGUGU-AUGUa ||||| | |:| ||| |||| ccAUGCAGA-GUA-ACACUACAg 2 21 19 39 [mm9:11:120344832-120344852:+] 0.4495 124 0 -18.00 -0.5685 MIMAT0000375 mmu-miR-297a 15239 Hgs ugUACGUGUACGUGUGU-AUGUa ||||| | |:| ||| |||| ccAUGCAGA-GUA-ACACUACAg 2 21 318 338 [mm9:11:120344832-120344852:+] 0.4495 124 0 -18.00 -0.4504 MIMAT0004579 mmu-miR-302a* 15239 Hgs cgUUCAUGUUGGUGCAA-AUUCa |:||: || | :||| |||| uaAGGUG-AAGCUUGUUCUAAGc 2 21 113 134 [mm9:11:120344627-120344648:+] 0.4894 122 0 -11.45 -0.2137 MIMAT0004629 mmu-miR-22* 15239 Hgs auuucGAACG-GUGACUUCUUGa || |: | | ||||||| uggccCUGGUACCCAGAAGAACc 2 18 350 372 [mm9:11:120345163-120345185:+] 0.5069 148 7 -14.21 -0.1505 MIMAT0004629 mmu-miR-22* 15239 Hgs auuucGAACG-GUGACUUCUUGa || |: | | ||||||| uggccCUGGUACCCAGAAGAACc 2 18 649 671 [mm9:11:120345163-120345185:+] 0.5069 148 7 -14.21 -0.1264 MIMAT0000556 mmu-miR-324-3p 15239 Hgs ucGUCGUGGACCCCGUCACc |||||| |||||||| gcCAGCAC--AGGGCAGUGa 2 19 257 274 [mm9:11:120344771-120344788:+] 0.6272 159 7 -26.38 -0.1653 MIMAT0004649 mmu-miR-339-3p 15239 Hgs gccgagacagcggcuCCGCGAGu ||||||| -----ccuugagucuGGCGCUCa 2 9 1 18 [mm9:11:120344814-120344831:+] 0.4495 140 7 -22.62 -0.7823 MIMAT0004649 mmu-miR-339-3p 15239 Hgs gccgaGACAGCGGCU----CCGCGAGu ||| | ::|| ||||||| uuugaCUGACCUUGAGUCUGGCGCUCa 2 19 291 317 [mm9:11:120344805-120344831:+] 0.5696 145 7 -25.05 -0.7586 MIMAT0000605 mmu-miR-350 15239 Hgs cuUUCACAUACCCGAAACACUu ||| || | | ||||||| cgAAG-GUUUUG--UUUGUGAa 2 21 135 153 [mm9:11:120344649-120344667:+] 0.4263 147 7 -12.76 -0.3504 MIMAT0005444 mmu-miR-218-2* 15239 Hgs gcGCCACGAACUGUCUUGGUAc :||| | : |||||||| ccUGGUACCCAGAAGAACCAUg 2 21 354 375 [mm9:11:120345167-120345188:+] 0.5069 152 7 -19.59 -0.1535 MIMAT0005444 mmu-miR-218-2* 15239 Hgs gcGCCACGAACUGUCUUGGUAc :||| | : |||||||| ccUGGUACCCAGAAGAACCAUg 2 21 653 674 [mm9:11:120345167-120345188:+] 0.5069 152 7 -19.59 -0.1289 MIMAT0004667 mmu-miR-199b 15239 Hgs auuGGUUACACGUCUGA-UGACa |::||||| | ||| |||| aguCUGAUGUG-A-ACUAACUGu 2 20 315 335 [mm9:11:120345128-120345148:+] 0.4938 123 0 -16.99 -0.1348 MIMAT0004667 mmu-miR-199b 15239 Hgs auuGGUUACACGUCUGA-UGACa |::||||| | ||| |||| aguCUGAUGUG-A-ACUAACUGu 2 20 614 634 [mm9:11:120345128-120345148:+] 0.4938 123 0 -16.99 -0.1130 MIMAT0000706 mmu-miR-362-5p 15239 Hgs uaagugugGAUCCAAGGUUC-CUAa | || || |||| ||| acaggagaCAAGUUUACAAGAGAUc 2 17 43 67 [mm9:11:120344557-120344581:+] 0.4823 120 0 -9.10 -0.3027 MIMAT0001094 mmu-miR-412 15239 Hgs gcCGA-UCACCUGGUCCACUu |:| :||| ||||||| guGUUGGGUGCCACAGGUGAa 2 19 266 286 [mm9:11:120345079-120345099:+] 0.4938 149 7 -19.19 -0.1933 MIMAT0001094 mmu-miR-412 15239 Hgs gcCGA-UCACCUGGUCCACUu |:| :||| ||||||| guGUUGGGUGCCACAGGUGAa 2 19 565 585 [mm9:11:120345079-120345099:+] 0.4938 149 7 -19.19 -0.1632 MIMAT0003740 mmu-miR-674 15239 Hgs auguggugAGGGUAGAGUCACg || : |||||||| cuuggaugUCAUCUCUCAGUGc 2 15 429 450 [mm9:11:120345242-120345263:+] 0.5300 150 7 -19.82 -0.5208 MIMAT0003740 mmu-miR-674 15239 Hgs auguggugAGGGUAGAGUCACg || : |||||||| cuuggaugUCAUCUCUCAGUGc 2 15 728 749 [mm9:11:120345242-120345263:+] 0.5300 150 7 -19.82 -0.4437 MIMAT0003472 mmu-miR-693-5p 15239 Hgs cuuuugaaagccUACACCGAc |||||||| cccagaagaaccAUGUGGCUc 2 10 361 381 [mm9:11:120345174-120345194:+] 0.5069 145 7 -13.46 -0.1514 MIMAT0003472 mmu-miR-693-5p 15239 Hgs cuuuugaaagccUACACCGAc |||||||| cccagaagaaccAUGUGGCUc 2 10 660 680 [mm9:11:120345174-120345194:+] 0.5069 145 7 -13.46 -0.1271 MIMAT0003493 mmu-miR-703 15239 Hgs aaGAA-AGGA--AGACUUCCAAAa ||| |:|| | |||||||| agCUUGUUCUAAGCCGAAGGUUUu 2 20 121 144 [mm9:11:120344635-120344658:+] 0.4894 153 7 -15.74 -0.1365 MIMAT0003504 mmu-miR-713 15239 Hgs cgACACACGGAAGUCACGu ||| |: ||||||| gaUGUCAUCUCUCAGUGCa 2 18 433 451 [mm9:11:120345246-120345264:+] 0.5532 149 7 -16.35 -0.5912 MIMAT0003504 mmu-miR-713 15239 Hgs cgACACACGGAAGUCACGu ||| |: ||||||| gaUGUCAUCUCUCAGUGCa 2 18 732 750 [mm9:11:120345246-120345264:+] 0.5532 149 7 -16.35 -0.5097 MIMAT0004236 mmu-miR-741 15239 Hgs agauGUAUCUUACCGUAGAGAGu | | |:||| |||||||| uucuCCUUGGAUGUCAUCUCUCa 2 20 424 446 [mm9:11:120345237-120345259:+] 0.5300 167 7 -22.72 -0.5315 MIMAT0004236 mmu-miR-741 15239 Hgs agauGUAUCUUACCGUAGAGAGu | | |:||| |||||||| uucuCCUUGGAUGUCAUCUCUCa 2 20 723 745 [mm9:11:120345237-120345259:+] 0.5300 167 7 -22.72 -0.4726 MIMAT0004846 mmu-miR-881 15239 Hgs agaUAAGUCUU-UUCUG-UGUCAa || ||||: || || ||||| accAUGCAGAGUAACACUACAGUu 2 20 18 41 [mm9:11:120344831-120344854:+] 0.4495 130 0 -13.92 -0.3502 MIMAT0004846 mmu-miR-881 15239 Hgs agaUAAGUCUU-UUCUG-UGUCAa || ||||: || || ||||| accAUGCAGAGUAACACUACAGUu 2 20 317 340 [mm9:11:120344831-120344854:+] 0.4495 130 0 -13.92 -0.2602 MIMAT0004850 mmu-miR-883b-5p 15239 Hgs acugacgaugGGUA-AGAGUCAu :||| ||||||| uccuuggaugUCAUCUCUCAGUg 2 13 427 449 [mm9:11:120345240-120345262:+] 0.5300 147 7 -15.85 -0.2621 MIMAT0004850 mmu-miR-883b-5p 15239 Hgs acugacgaugGGUA-AGAGUCAu :||| ||||||| uccuuggaugUCAUCUCUCAGUg 2 13 726 748 [mm9:11:120345240-120345262:+] 0.5300 147 7 -15.85 -0.2132 MIMAT0004863 mmu-miR-220 15239 Hgs uuCAC-AGACUGUGACACCACc ||| || || ||||||| auGUGAACUAACUGUGUGGUGu 2 20 321 342 [mm9:11:120345134-120345155:+] 0.4938 154 7 -15.65 -0.1014 MIMAT0004868 mmu-miR-343 15239 Hgs agaccCGUGUACUUCCC-UCu ||||| ||||| || cuccuGCACAGCAAGGGUAGa 2 16 379 399 [mm9:11:120345192-120345212:+] 0.5069 123 0 -17.72 -0.2372 MIMAT0004868 mmu-miR-343 15239 Hgs agaccCGUGUACUUCCC-UCu ||||| ||||| || cuccuGCACAGCAAGGGUAGa 2 16 678 698 [mm9:11:120345192-120345212:+] 0.5069 123 0 -17.72 -0.1994 MIMAT0004881 mmu-miR-466f-5p 15239 Hgs guACGUGUACGUGUGUGUGCAu | :||| | : ||||||| agUUUACAAGAGAUCACACGUg 2 21 53 74 [mm9:11:120344567-120344588:+] 0.4823 152 7 -16.72 -0.3779 MIMAT0005832 mmu-miR-669g 15239 Hgs uaGUACA-GU-UGUGUAUGU-UACGu :| || || ::|::|||| |||| auUAAGUGCACGUAUGUACACAUGCg 2 22 7 32 [mm9:11:120344521-120344546:+] 0.4807 123 0 -15.68 -0.2233 MIMAT0005841 mmu-miR-669h-5p 15239 Hgs cguGAGUUGAUA-UGUG---GGUACGUa ||::| | | :|:| ||||||| --cCUUGAGUCUGGCGCUCACCAUGCAg 2 22 1 26 [mm9:11:120344814-120344839:+] 0.4495 147 7 -19.58 -0.6385 MIMAT0005841 mmu-miR-669h-5p 15239 Hgs cguGAGUUGAUA-UGUG---GGUACGUa ||::| | | :|:| ||||||| gacCUUGAGUCUGGCGCUCACCAUGCAg 2 22 298 325 [mm9:11:120344812-120344839:+] 0.5696 147 7 -20.45 -0.3234 MIMAT0005858 mmu-miR-1197 15239 Hgs ucuUCAUC-UGGUACAC--AGGAu || || |||||||| |||| cccAGAAGAACCAUGUGGCUCCUg 2 19 361 384 [mm9:11:120345174-120345197:+] 0.5069 121 0 -23.83 -0.1983 MIMAT0005858 mmu-miR-1197 15239 Hgs ucuUCAUC-UGGUACAC--AGGAu || || |||||||| |||| cccAGAAGAACCAUGUGGCUCCUg 2 19 660 683 [mm9:11:120345174-120345197:+] 0.5069 121 0 -23.83 -0.1676 MIMAT0007878 mmu-miR-1894-3p 15239 Hgs gaGGGA-AGUGGGAGAG-GGAACg |:|| || ||| :|| ||||| auCUCUGUCUCCCCUUCUCCUUGg 2 21 410 433 [mm9:11:120345223-120345246:+] 0.5300 131 0 -24.89 -0.6017 MIMAT0007878 mmu-miR-1894-3p 15239 Hgs gaGGGA-AGUGGGAGAG-GGAACg |:|| || ||| :|| ||||| auCUCUGUCUCCCCUUCUCCUUGg 2 21 709 732 [mm9:11:120345223-120345246:+] 0.5300 131 0 -24.89 -0.5306 MIMAT0009404 mmu-miR-1940 15239 Hgs uugaCGAGGUGGAAGAGUCAG-GAGGUa || |:|:|| ||| || ||||| augaGC-CUAUCUGCUCUUUCUCUCCAg 2 24 162 188 [mm9:11:120344676-120344702:+] 0.4449 133 0 -23.81 -0.1326 MIMAT0009412 mmu-miR-1946a 15239 Hgs uuuucacacacgguggUGACGGGCCGa | |||||||| agaaccuucucuggagAGUGCCCGGCu 2 12 239 265 [mm9:11:120345052-120345078:+] 0.4982 147 7 -24.92 -0.1985 MIMAT0009412 mmu-miR-1946a 15239 Hgs uuuucacacacgguggUGACGGGCCGa | |||||||| agaaccuucucuggagAGUGCCCGGCu 2 12 538 564 [mm9:11:120345052-120345078:+] 0.4982 147 7 -24.92 -0.1677 MIMAT0009431 mmu-miR-1958 15239 Hgs ugaauGACGAAGGUGAA-AGGAu |||: ||| ||| |||| uaucuCUGUCUCCCCUUCUCCUu 2 18 409 431 [mm9:11:120345222-120345244:+] 0.5300 129 0 -15.88 -0.2056 MIMAT0009431 mmu-miR-1958 15239 Hgs ugaauGACGAAGGUGAA-AGGAu |||: ||| ||| |||| uaucuCUGUCUCCCCUUCUCCUu 2 18 708 730 [mm9:11:120345222-120345244:+] 0.5300 129 0 -15.88 -0.1747 MIMAT0009438 mmu-miR-1965 15239 Hgs acgcggugaugcCGGGCCGAa |||||||| ucucuggagaguGCCCGGCUg 2 10 246 266 [mm9:11:120345059-120345079:+] 0.4982 145 7 -20.73 -0.1028 MIMAT0009455 mmu-miR-1983 15239 Hgs ucuuuugUACGAGGUCCACUc :||| ||||||| guguuggGUGCCACAGGUGAa 2 15 266 286 [mm9:11:120345079-120345099:+] 0.4938 150 7 -17.74 -0.1970 MIMAT0009455 mmu-miR-1983 15239 Hgs ucuuuugUACGAGGUCCACUc :||| ||||||| guguuggGUGCCACAGGUGAa 2 15 565 585 [mm9:11:120345079-120345099:+] 0.4938 150 7 -17.74 -0.1664 MIMAT0011214 mmu-miR-2138 15239 Hgs uaAGGCGGUUCGGGCAAGGGAa ||| : | |: ||||||| gcUCCUAUCA-CUGGUUCCCUg 2 21 164 184 [mm9:11:120344977-120344997:+] 0.5025 146 7 -16.53 -0.1259 MIMAT0011214 mmu-miR-2138 15239 Hgs uaAGGCGGUUCGGGCAAGGGAa ||| : | |: ||||||| gcUCCUAUCA-CUGGUUCCCUg 2 21 463 483 [mm9:11:120344977-120344997:+] 0.5025 146 7 -16.53 -0.1044 MIMAT0015645 mmu-miR-3473 15239 Hgs ccGACUCGGUAGAGAGGu ||| |: ||||||| auCUGCUCUUUCUCUCCa 2 17 170 187 [mm9:11:120344684-120344701:+] 0.4858 152 7 -18.71 -0.4115 MIMAT0000135 mmu-miR-125a-5p 15239 Hgs aguGUCCAAUUUCCCAGA-GUCCCu |:|| ::|| ||| ||||| cccCGGGACUGGGGCUCUGCAGGGc 2 22 210 234 [mm9:11:120345023-120345047:+] 0.5025 125 0 -24.54 -0.1279 MIMAT0000135 mmu-miR-125a-5p 15239 Hgs aguGUCCAAUUUCCCAGA-GUCCCu |:|| ::|| ||| ||||| cccCGGGACUGGGGCUCUGCAGGGc 2 22 509 533 [mm9:11:120345023-120345047:+] 0.5025 125 0 -24.54 -0.1070 MIMAT0000136 mmu-miR-125b-5p 15239 Hgs agugUUCAAUCCCAGA-GUCCCu :| | :|| ||| ||||| ccggGACUGGGGCUCUGCAGGGc 2 19 212 234 [mm9:11:120345025-120345047:+] 0.5025 122 0 -23.16 -0.1267 MIMAT0000136 mmu-miR-125b-5p 15239 Hgs agugUUCAAUCCCAGA-GUCCCu :| | :|| ||| ||||| ccggGACUGGGGCUCUGCAGGGc 2 19 511 533 [mm9:11:120345025-120345047:+] 0.5025 122 0 -23.16 -0.1059 MIMAT0000151 mmu-miR-140 15239 Hgs gaugguaucccaUUUUGGUGAc :|||||||| uacaguucaccaGAAACCACUu 2 11 35 56 [mm9:11:120344848-120344869:+] 0.4495 146 7 -13.00 -0.7455 MIMAT0000151 mmu-miR-140 15239 Hgs gaugguaucccaUUUUGGUGAc :|||||||| uacaguucaccaGAAACCACUu 2 11 334 355 [mm9:11:120344848-120344869:+] 0.4495 146 7 -13.00 -0.6646 MIMAT0000155 mmu-miR-142-3p 15239 Hgs agGUAUUUCAUCCUUUGUGAUGu |||: || | | |||||||| acCAUGCAG-A-GUAACACUACa 2 22 18 38 [mm9:11:120344831-120344851:+] 0.4495 157 7 -23.03 -0.6844 MIMAT0000155 mmu-miR-142-3p 15239 Hgs agGUAUUUCAUCCUUUGUGAUGu |||: || | | |||||||| acCAUGCAG-A-GUAACACUACa 2 22 317 337 [mm9:11:120344831-120344851:+] 0.4495 157 7 -23.03 -0.6314 MIMAT0000212 mmu-miR-183 15239 Hgs ucaCUUAAGAUGGUCACGGUAu ||: || || ||||||| caaGAGAUC-ACACGUGCCAUu 2 20 59 79 [mm9:11:120344573-120344593:+] 0.4960 153 7 -16.67 -0.1495 MIMAT0000214 mmu-miR-185 15239 Hgs aguccUUGACG-GAAAGAGAGGu | |||| |||||||||| agccuAUCUGCUCUUUCUCUCCa 2 18 165 187 [mm9:11:120344679-120344701:+] 0.4449 168 7 -26.55 -0.3368 MIMAT0000236 mmu-miR-203 15239 Hgs gaUCACCAGGAUUU---GUAAAGUg |||| |||| :|||||| gcAGUGAAAAUAAAAUGUAUUUCAa 2 21 454 478 [mm9:11:120345267-120345291:+] 0.5532 135 6 -10.46 -0.1936 MIMAT0000247 mmu-miR-143 15239 Hgs cucGAUGUCACGA-AGUAGAGu || | | | ||||||| cuuCUCCUUGGAUGUCAUCUCu 2 19 423 444 [mm9:11:120345236-120345257:+] 0.5300 141 7 -11.41 -0.4413 MIMAT0000247 mmu-miR-143 15239 Hgs cucgaugucaCGAAGUAGAGu || ||||||| gugaggcccaGC-UCAUCUCc 2 12 271 290 [mm9:11:120344785-120344804:+] 0.6896 141 7 -13.57 -0.1893 MIMAT0000247 mmu-miR-143 15239 Hgs cucGAUGUCACGA-AGUAGAGu || | | | ||||||| cuuCUCCUUGGAUGUCAUCUCu 2 19 722 743 [mm9:11:120345236-120345257:+] 0.5300 141 7 -11.41 -0.3842 MIMAT0000513 mmu-miR-19b 15239 Hgs agucaaaACGUACCUA-AACGUGu |||:| || |||||| guacacaUGCGUCCAUAUUGCACa 2 17 22 45 [mm9:11:120344536-120344559:+] 0.4685 124 6 -14.32 -0.2890 MIMAT0000555 mmu-miR-324-5p 15239 Hgs uguggUUACGGGAUCCCCUACGc |||||: | |||||||| aggugAAUGCUGU-GGGGAUGCu 2 19 280 301 [mm9:11:120345093-120345114:+] 0.4938 164 7 -22.66 -0.1860 MIMAT0000555 mmu-miR-324-5p 15239 Hgs uguggUUACGGGAUCCCCUACGc |||||: | |||||||| aggugAAUGCUGU-GGGGAUGCu 2 19 579 600 [mm9:11:120345093-120345114:+] 0.4938 164 7 -22.66 -0.1569 MIMAT0000651 mmu-miR-19a 15239 Hgs agucaaaACGUAUCUA-AACGUGu |||:| || |||||| guacacaUGCGUCCAUAUUGCACa 2 17 22 45 [mm9:11:120344536-120344559:+] 0.4685 124 6 -14.34 -0.2890 MIMAT0001533 mmu-miR-448 15239 Hgs uacccUGUA-GGAUGUAU-ACGUu |||| | | |||| |||| uguacACAUGCGUCCAUAUUGCAc 2 18 21 44 [mm9:11:120344535-120344558:+] 0.4685 124 0 -12.89 -0.1446 MIMAT0004847 mmu-miR-882 15239 Hgs ugauUACGCGAUUGAGAGAGGa || :||| :||||||| gccuAUCUGCUCUUUCUCUCCa 2 19 166 187 [mm9:11:120344680-120344701:+] 0.4858 158 7 -20.61 -0.4052 MIMAT0004847 mmu-miR-882 15239 Hgs ugAUUACGCGAUUGAG-AGAGGa |:| || | |:||| ||||| agUGAGGC-CCAGCUCAUCUCCu 2 21 270 291 [mm9:11:120344784-120344805:+] 0.6896 126 0 -19.61 -0.4594 MIMAT0004853 mmu-miR-874 15239 Hgs agccaggGAGCCCG----GUCCCGUc || |||| ||||||| cccgggaCUGGGGCUCUGCAGGGCAa 2 16 211 236 [mm9:11:120345024-120345049:+] 0.5025 146 7 -29.42 -0.1487 MIMAT0004853 mmu-miR-874 15239 Hgs agCCAGGGAGCCCGGUCCCGUc || || | | ||||||| agGGACCGCCAGCACAGGGCAg 2 21 250 271 [mm9:11:120344764-120344785:+] 0.6272 152 7 -27.13 -0.1705 MIMAT0004853 mmu-miR-874 15239 Hgs agccaggGAGCCCG----GUCCCGUc || |||| ||||||| cccgggaCUGGGGCUCUGCAGGGCAa 2 16 510 535 [mm9:11:120345024-120345049:+] 0.5025 146 7 -29.42 -0.1247 MIMAT0004855 mmu-miR-876-3p 15239 Hgs acuuaaugaaacaUUUGGUGAu |||||||| uacaguucaccagAAACCACUu 2 10 35 56 [mm9:11:120344848-120344869:+] 0.4495 145 7 -11.06 -0.7418 MIMAT0004855 mmu-miR-876-3p 15239 Hgs acuuaaugaaacaUUUGGUGAu |||||||| uacaguucaccagAAACCACUu 2 10 334 355 [mm9:11:120344848-120344869:+] 0.4495 145 7 -11.06 -0.6609 MIMAT0004896 mmu-miR-590-3p 15239 Hgs ugaUCG-AAUAUGUAUUUUAau ||| |: | ||||||| cagAGCAGUGAAAAUAAAAUgu 3 19 450 471 [mm9:11:120345263-120345284:+] 0.5532 133 0 -5.33 -0.1525 MIMAT0004936 mmu-miR-873 15239 Hgs uccucugAGUGUUCAA-GGACg |||| :||| |||| gcuccuaUCACUGGUUCCCUGc 2 15 164 185 [mm9:11:120344977-120344998:+] 0.5025 122 0 -17.16 -0.1010

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G009564 Hgs Mus musculus 15239 19536157 0 0 R44482; MOUSE$HGS_01; Binding factors: mmu-miR-1897-5p , mmu-miR-9-5p // 0 0 R44483; MOUSE$HGS_02; Binding factors: mmu-miR-138-5p , mmu-miR-763

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Hgs mmu-miR-140 beg:40 end:56 pic:3' GATGGTATCCCATTTTGGTGAC 5'& |||| .|||||||| &5' --ACCA------GAAACCACT- 3' Hgs mmu-miR-876-3p beg:45 end:56 pic:3' ACTTAATGAAACATTTGGTGAT 5'& |||||||| &5' -------------AAACCACT- 3' Hgs mmu-miR-9star beg:390 end:407 pic:3' TGAAAGCCAATAGATCGAAATA 5'& || || ||||||| &5' ------GGGTAGA-AGCTTTA- 3' Hgs mmu-miR-191star beg:439 end:453 pic:3' CCCTTGCTTTAGGTTCACGTCG 5'& ||. ||||||| &5' ----------TCTCAGTGCAG- 3' Hgs mmu-miR-741 beg:429 end:447 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |.||| ||||||||| &5' --------GGATGTCATCTCTCA 3' Hgs mmu-miR-1983 beg:270 end:286 pic:3' TCTTTTGTACGAGGTCCACTC 5'& .||| ||||||| &5' -------GTGCCACAGGTGA- 3' Hgs mmu-miR-669h-5p beg:9 end:26 pic:3' CGTGAGTTGATATGTGGGTACGTA 5'& ||.|||| ||||||| &5' GCGCTCA---------CCATGCA- 3' Hgs mmu-miR-22star beg:353 end:372 pic:3' ATTTCGAACGGTGA--CTTCTTGA 5'& || .|| ||||||| &5' -------TGGTACCCAGAAGAAC- 3' Hgs mmu-miR-324-5p beg:282 end:301 pic:3' TGTGGTTACGGGATCCCCTACGC 5'& |||||. | |||||||| &5' -----AATGCTGT-GGGGATGC- 3' Hgs mmu-miR-702 beg:108 end:126 pic:3' CTCGCCCCATTTCCCACCCGT 5'& |||| ||.|||||||| &5' GAGC-----AAGGGGTGGGC- 3' Hgs mmu-miR-382star beg:270 end:289 pic:3' TTTTTCACAACAGGCACTTACT 5'& ..||| ||||||| &5' ---GGGTGCCACAGGTGAATG- 3' Hgs mmu-miR-2138 beg:165 end:184 pic:3' TAAGGC-GGTTCGGGCAAGGGAA 5'& ||| .|| |. ||||||| &5' --TCCTATCA--CTGGTTCCCT- 3' Hgs mcmv-miR-m21-1 beg:174 end:185 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||.||||. &5' ------------GTTCCCTG- 3' Hgs mmu-let-7a beg:170 end:190 pic:3' TTGATATGTTGGATGATGGAGT 5'& |||. || ||.|.||| &5' -ACTGGTT--CC--CTGCTTCA 3' Hgs mmu-let-7c beg:366 end:392 pic:3' TTGGTATGTT--GGATGATGGAGT 5'& ||||||. . |||.| || || &5' AACCATGTGGCTCCTGC-ACAGCA 3' Hgs mmu-let-7i beg:169 end:190 pic:3' TTGTCGTGTTT-GATGATGGAGT 5'& ||| . ||.|.||| &5' -----CACTGGTTCCCTGCTTCA 3' Hgs mmu-let-7istar beg:385 end:411 pic:3' TCGTT-CCGTCATCGAACG-CGTC 5'& ||||| ||.|| ||||| |.| &5' AGCAAGGGTAGAAGCTTTAGGTA- 3' Hgs mmu-miR-103 beg:272 end:293 pic:3' AGTATCGGGA--CATGTTACGACGA 5'& ||| ||. |||||||. &5' -----GCCACAGGTG-AATGCTGT- 3' Hgs mmu-miR-107 beg:272 end:293 pic:3' ACTATCGGGA--CATGTTACGACGA 5'& ||| ||. |||||||. &5' -----GCCACAGGTG-AATGCTGT- 3' Hgs mmu-miR-1224 beg:136 end:156 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& || |.||||. ||||||. &5' --CCTCTTCCCT-GTCCTCG- 3' Hgs mmu-miR-125b-3p beg:296 end:314 pic:3' TCGAGGGTTCTCGGATTGGGCA 5'& |||. |||||..|||| &5' -GCTT-----AGCCTGGCCCG- 3' Hgs mmu-miR-139-5p beg:275 end:295 pic:3' GACCTCTGTGCACG--TGACATCT 5'& ||| ||| .||||.|. &5' ------ACAGGTGAATGCTGTGGG 3' Hgs mmu-miR-142-3p beg:16 end:39 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& ||||. || || ||||||||| &5' -CCATGCAG-AGT-AACACTACA 3' Hgs mmu-miR-150star beg:144 end:169 pic:3' GATAGGGGGT-CCGGACAT-GGTC 5'& ||.|||.| . ||.||| || &5' CTGTCCTCGGTGGTCTGGCTCC-- 3' Hgs mmu-miR-184 beg:399 end:420 pic:3' TGGGAATAGTCA-AGAGGCAGGT 5'& |.||| .|| ||||.|||. &5' --CTTTA--GGTATCTCTGTCT- 3' Hgs mmu-miR-188-5p beg:101 end:122 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& ||.|| . | |||||||.|| &5' CCTTCTGTGA-GCAAGGGGTG 3' Hgs mmu-miR-188-5p beg:135 end:159 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& |||||. || ||. |.|| &5' CCCTCTTCCCTGTCCTCGGTG 3' Hgs mmu-miR-1894-3p beg:408 end:433 pic:3' GAGGGA-AGT-GGGAGAGGGAACG 5'& ||.|| || ||||. ||||| &5' -TCTCTGTCTCCCCTTCTCCTTG- 3' Hgs mmu-miR-18astar beg:381 end:399 pic:3' GTCTTCCTCGTGAA--TCCCGTCA 5'& |||| ||||.|| &5' --------GCACAGCAAGGGTAG- 3' Hgs mmu-miR-1904 beg:376 end:401 pic:3' GGAGGGAG-GTC--TCCTCGTCTTG 5'& ||||. ||| ||| |.|||| &5' -CTCCTGCACAGCAAGG-GTAGAA- 3' Hgs mmu-miR-1941-5p beg:396 end:423 pic:3' TTCGGAGA-CATGGTCGTAGAGGGA 5'& ||||.|. |||.| ..|||||| &5' AAGCTTTAGGTATCTCTGTCTCCC- 3' Hgs mmu-miR-1946a beg:333 end:354 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& ||||| |. ||| |||.||| &5' ----GTGTG-GTGTCCAG-GCCTGGC- 3' Hgs mmu-miR-1950 beg:433 end:454 pic:3' ACTGGTATAGGAATCTACGTCT 5'& || .||| ||. .|||||| &5' TG-TCATCTCTCA--GTGCAGA 3' Hgs mmu-miR-1954 beg:213 end:232 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& .|| ||| .|||||||| &5' GACTGGG----GCTCTGCAG- 3' Hgs mmu-miR-1957 beg:156 end:177 pic:3' CAGTATACGA-GATGGTGAC 5'& ||| ||| |||.||||| &5' GTCTG--GCTCCTATCACTG 3' Hgs mmu-miR-1967 beg:197 end:220 pic:3' CGTAGAA--GAGGGGTCCTAGGAGT 5'& |.||| ||||||.||| |. &5' -CGTCTGACCTCCCCGGGA-CT--- 3' Hgs mmu-miR-203star beg:363 end:375 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& ||||||||. &5' ------------AAGAACCAT- 3' Hgs mmu-miR-20astar beg:438 end:453 pic:3' GAAATTCACGAGCATTACGTCA 5'& ||| |.||||| &5' ---------CTCTCAGTGCAG- 3' Hgs mmu-miR-2145 beg:340 end:358 pic:3' TTGGTCCGGGCTGGGACGA 5'& |||||||.|.||||| &5' --CCAGGCCTGGCCCTG-- 3' Hgs mmu-miR-218-2star beg:354 end:376 pic:3' GCGCCACGAACTGTCTTGGTAC 5'& ||| ||||||||| &5' ---GGTACCCAGAAGAACCATG 3' Hgs mmu-miR-220 beg:325 end:342 pic:3' TTCACAGACTGTGACACCACC 5'& || || ||||||| &5' ------CTAACTGTGTGGTG- 3' Hgs mmu-miR-221 beg:357 end:381 pic:3' CTTTGGGTCGTCTGT-TACATCGA 5'& |||||| ||| ||||.||| &5' ---ACCCAGAAGAACCATGTGGCT 3' Hgs mmu-miR-222 beg:358 end:381 pic:3' TGGGTCATCGGTCTACATCGA 5'& |||||| || ||||.||| &5' ACCCAGAAGAACCATGTGGCT 3' Hgs mmu-miR-23b beg:307 end:327 pic:3' CCATTAGGGACCG----TTACACTA 5'& ||| || .|||||| &5' ------CCC-GGAGTCTGATGTGA- 3' Hgs mmu-miR-298 beg:397 end:419 pic:3' CCCTTCTT-GTCGGGAGGAGACGG 5'& |||| .|| . .|||||.| &5' --GAAGCTTTAGGTA-TCTCTGTC 3' Hgs mmu-miR-29bstar beg:45 end:72 pic:3' ATTTGGTG-GTATACT--TTGGTCG 5'& ||||||| .||||| |||.||| &5' -AAACCACTTATATGTCTAACTAGC 3' Hgs mmu-miR-323-3p beg:328 end:343 pic:3' TCTCCAGCTGGCACATTACAC 5'& ||.||||..||| &5' --------ACTGTGTGGTGT- 3' Hgs mmu-miR-34a beg:76 end:93 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& || ||| .|||||| &5' ----CCC-CTAT--TACTGCC- 3' Hgs mmu-miR-34b-5p beg:75 end:93 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& || ||| .|||||| &5' ----TCCCCTAT---TACTGCC- 3' Hgs mmu-miR-34c beg:79 end:93 pic:3' CGTTAGTCGATTGAT-GTGACGGA 5'& ||| .|||||| &5' ------------CTATTACTGCC- 3' Hgs mmu-miR-361 beg:304 end:324 pic:3' CATGGGGACCTCTAAGACTATT 5'& |. ||| |||| ||||||. &5' -TGGCCC-GGAG--TCTGATG- 3' Hgs mmu-miR-362-5p beg:375 end:397 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& | .| |||. |||||.| &5' --TGGCTCCTGCACAGCAAGGGT- 3' Hgs mmu-miR-412 beg:265 end:287 pic:3' GC-CGA-TCACCTGGTCCACTT 5'& | |.| .||| |||||||| &5' -GTGTTGGGTGCCACAGGTGAA 3' Hgs mmu-miR-431 beg:219 end:236 pic:3' ACGTACTGCCG-GACGTTCTGT 5'& ||| |||||.|.|| &5' --------GGCTCTGCAGGGCA 3' Hgs mmu-miR-449a beg:76 end:93 pic:3' TGGTCGATTGTTATGTGACGGT 5'& || ||| .|||||| &5' -CCC-CTAT-----TACTGCC- 3' Hgs mmu-miR-449b beg:76 end:93 pic:3' CGGTCGATTGTTGTGACGGA 5'& || ||| .|||||| &5' -CCC-CTAT---TACTGCC- 3' Hgs mmu-miR-465a-3p beg:179 end:198 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.||| |.|||||| &5' -CTGCTTCA----GTCCTGAT- 3' Hgs mmu-miR-465a-3p beg:342 end:360 pic:3' AGATGAATCTTT-CCGGGACTAG 5'& ||. |||||||.| &5' -------AGGCCTGGCCCTGGT- 3' Hgs mmu-miR-465b-3p beg:179 end:198 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.||| |.|||||| &5' -CTGCTTCA----GTCCTGAT- 3' Hgs mmu-miR-465c-3p beg:179 end:198 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.||| |.|||||| &5' -CTGCTTCA----GTCCTGAT- 3' Hgs mmu-miR-470 beg:438 end:462 pic:3' TGAGTGGTCACGGTCAGGTT-CTT 5'& ||| .||||| ||| ||. ||| &5' -CTC-TCAGTG-CAGAGCAGTGAA 3' Hgs mmu-miR-511 beg:218 end:241 pic:3' ACTC---ACGTCTCGTTT-TCCGTA 5'& |.| |||||.||||. || &5' -GGGCTCTGCAGGGCAAGTAG---- 3' Hgs mmu-miR-540-3p beg:189 end:210 pic:3' GGTCCTAGCTGG-AGACTGGA 5'& || ||| .|| |||||||| &5' CCT-GAT--GCCGTCTGACCT 3' Hgs mmu-miR-544 beg:8 end:30 pic:3' CTCGAACGATTTTTACGTCTTA 5'& .|| ||| |||||||.| &5' -GGC--GCTCACCATGCAGAGT 3' Hgs mmu-miR-673-3p beg:335 end:359 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& |||| ||| || .||||.|| &5' GGTGTCCAGGCCT-GGCCCTGG- 3' Hgs mmu-miR-673-5p beg:273 end:296 pic:3' GAGGT-TCCTGGTCTCGACACTC 5'& ||| ||| ||||||.| &5' --CCACAGGTGAAT-GCTGTGGG 3' Hgs mmu-miR-677 beg:160 end:178 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& .||| .|||||||. &5' -----GGCTCC-TATCACTGG- 3' Hgs mmu-miR-679 beg:425 end:451 pic:3' TGGT-TCT-CAGTGGAGTGTCAGG 5'& || .|| ||||.||| |||| | &5' -CCTTGGATGTCATCTCTCAGTGC 3' Hgs mmu-miR-680 beg:418 end:439 pic:3' GGGGGTACAGTCGTCTACGGG 5'& |||| || ..||||.| &5' -CCCCTTCTCCTTGGATGTC- 3' Hgs mmu-miR-709 beg:399 end:422 pic:3' AGGAGGACG--GAGACGGAGG 5'& |.|. |. |||||.|||| &5' -CTTTAGGTATCTCTGTCTCC 3' Hgs mmu-miR-713 beg:429 end:452 pic:3' CGACACACGGA----AGTCACGT 5'& .|| ||.| |||||||| &5' -TTGGATGTCATCTCTCAGTGCA 3' Hgs mmu-miR-744 beg:77 end:98 pic:3' ACGACAATCGGGAT-----CGGGGCGT 5'& ||||| ||||.|.| &5' ---------CCCTATTACTGCCCTGTA 3' Hgs mmu-miR-883a-5p beg:432 end:449 pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||. | ||||||||. &5' -----TGT--CATCTCTCAGT- 3' Hgs mmu-miR-883b-5p beg:430 end:450 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& | || |.| |||||||. &5' -GGATGTCATC---TCTCAGTG 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Hgs; Hrs mmu-miR-103 261 292 AGUAUCGGGACAUGUUACG----------ACGA- :||: ||| ::||| |||| ---CGGCUGUGUUGGGUGCCACAGGUGAAUGCUG Hgs; Hrs mmu-miR-107 261 292 ACUAUCGGGACAUGUUACG----------ACGA- :||: ||| ::||| |||| ---CGGCUGUGUUGGGUGCCACAGGUGAAUGCUG Hgs; Hrs mmu-miR-10a 214 235 GUGUUUAAGCCU-AGAUGUCCCAU ::| | ||: |||:||||| --GGGACUGGGGCUCUGCAGGGC- Hgs; Hrs mmu-miR-10b 212 235 UGUGUUUAAGCCAAGAUGUCCC- |: :| | || |||:||||| CCGGGACUGGGGCUCUGCAGGGC Hgs; Hrs mmu-miR-122a 11 40 -UGUUUGUGGUAA----CAGUGUGAGGU- :|: |||||| || ||||| || GGCGCUCACCAUGCAGAGUAACACUACAG Hgs; Hrs mmu-miR-124a 261 279 -CCGUAAGUGGCGCACGGAAU ||| :: | ||||| CGGCUG-UGUUGGGUGCCA-- Hgs; Hrs mmu-miR-125a 212 235 GUGUCCAAUUUCCC-AGA-GUCCCU |:|| :||| ||| ||||| -CCGGGACU-GGGGCUCUGCAGGGC Hgs; Hrs mmu-miR-125b 276 317 AGUGUUCA--------AUCCCA--GAGUC--------CCU ||||:|| |:||| ||:|| ||| CCACAGGUGAAUGCUGUGGGGAUGCUUAGCCUGGCCCGGAG Hgs; Hrs mmu-miR-133a 260 280 UGUCGACCAACUUCCCCUGGUU |:|||| || ||| :||| CCGGCUG--UGUUGGGUGCCAC Hgs; Hrs mmu-miR-133b 261 280 AUCGACCAACUUCCCCUGGUU :|||| || ||| :||| CGGCUG--UGUUGGGUGCCAC Hgs; Hrs mmu-miR-134 149 176 GGGGAG--ACCAGUU---GGUCAGUGU :|||| ||||| || |||| GUCCUCGGUGGUCUGGCUCCUAUCACU Hgs; Hrs mmu-miR-139 277 297 UCUGUGCACG--UGACAUCU- ||| ||| :||||:|: -CACAGGUGAAUGCUGUGGGG Hgs; Hrs mmu-miR-140* 131 160 AGGCACCA--AGAUGGGACA----CCAU- || ||| ||| |||||| |||: CCCUUGGCCCUCUUCCCUGUCCUCGGUGG Hgs; Hrs mmu-miR-141 242 273 -GGU--AGAA-----AUGGUCUGUCACAAU- || ||| |:|| |:| |||||: ACCUUCUCUGGAGAGUGCCCGGCUGUGUUGG Hgs; Hrs mmu-miR-142-3p 18 40 -GGUAU--UUCAUCCUUUGUGAUGU- ||||: :|||| |||||||| ACCAUGCAGAGUA----ACACUACAG Hgs; Hrs mmu-miR-149 290 323 CCUCACUUCUGUG------------CCUCGGUCU- ||| ||::| ||||:| || --UGUGGGGAUGCUUAGCCUGGCCCGGAGUCUGAU Hgs; Hrs mmu-miR-181c 274 290 UGAGUGGCUGUCCAACUUACAA :|| |||||| ||||| ---UGCC-ACAGGU-GAAUGC- Hgs; Hrs mmu-miR-184 179 206 UGGGAAU-AGUCAAGA----GGCAGGU |||| ||||| || |||||: UCCCUGCUUCAGUCCUGAUGCCGUCUG Hgs; Hrs mmu-miR-185 64 82 CUUGA-CGGAAAGAGAGGU |||| ||| ||| |||| UAACUAGCCAUUC-CUCCC Hgs; Hrs mmu-miR-188 101 124 UGGGAGGUGGUACGUUCCCUAC- ||||:| :: |||||||:|| UCCCUUCUGUGAGCAAGGGGUGG Hgs; Hrs mmu-miR-193 217 240 -GACCCUGAAACA-UCCGGUCAA |||||:|| || :||| ||| ACUGGGGCUCUGCAGGGCAAGUA Hgs; Hrs mmu-miR-199a 154 179 CUUGUCCAUCAGACUU------GUGACCC |||:|||||: |||||| ----CGGUGGUCUGGCUCCUAUCACUGGU Hgs; Hrs mmu-miR-199a* 317 338 UUGGUUACACGUCUGA-UGACAU- |::||||| ||| |||||: -UCUGAUGUGA--ACUAACUGUGU Hgs; Hrs mmu-miR-199b 154 179 CUUGUCCAUCAGAUUU------GUGACCC |||:||||:: |||||| ----CGGUGGUCUGGCUCCUAUCACUGGU Hgs; Hrs mmu-miR-200a 256 273 UGUAGCAAUGGUCUGUCACAAU- |:|| |:| |||||: ------GUGCCCGGCUGUGUUGG Hgs; Hrs mmu-miR-207 213 240 CUCCCUCCUCUCG----GUCCUCUUCG- |||| :|:|| ||||: |||: -CGGGACUGGGGCUCUGCAGGGCAAGUA Hgs; Hrs mmu-miR-212 197 230 CCGGCA-------------CUGACCUCU-GACAAU ||||| ||||||:| ||| UGCCGUCUGACCUCCCCGGGACUGGGGCUCUGC-- Hgs; Hrs mmu-miR-214 256 294 GACGG------ACAGA-CACGG---------ACGACA- |||| |||: ||||| |||||| GUGCCCGGCUGUGUUGGGUGCCACAGGUGAAUGCUGUG Hgs; Hrs mmu-miR-217 178 204 UAGGUC---AGUCAAGGACUACGUCAU ||| |||| ||||||||| || UUCCCUGCUUCAG-UCCUGAUGCCGUC Hgs; Hrs mmu-miR-221 359 382 UUUGGGUCGUCUGU-UACAUCGA- |||||| ||| ||||:||| -UACCCAGAAGAACCAUGUGGCUC Hgs; Hrs mmu-miR-222 350 382 CUCUGGG-UCAUCGGUCU-------ACAUCGA- |:||| :||| ||||| |||:||| -UGGCCCUGGUACCCAGAAGAACCAUGUGGCUC Hgs; Hrs mmu-miR-23a 292 328 -CCUUUAG-----GGACCG---------UUACACUA ||::|| |||||| :|||||| UGGGGAUGCUUAGCCUGGCCCGGAGUCUGAUGUGAA Hgs; Hrs mmu-miR-24 176 203 GACAA-GGACGA---CUUGACU-CGGU- ||| |||||| | |||| |||: -GGUUCCCUGCUUCAGUCCUGAUGCCGU Hgs; Hrs mmu-miR-293 216 237 UGUGAUGUUUGAGACG--CCGUGA |||: :::|||||| |||| -GACUG-GGGCUCUGCAGGGCAA- Hgs; Hrs mmu-miR-296 110 130 UGUCCUAACUCCCC-CCCGGGA- || ||||| |||||:| ---UGAGCAAGGGGUGGGCCUUC Hgs; Hrs mmu-miR-297 19 40 -GUACGUGUACGUGUGUAUGUA |||||| | |||| |||| CCAUGCAGAGUAACAC-UACAG Hgs; Hrs mmu-miR-298 116 141 CCUUCUUGUCGGGAGGAGA---CGG- ::|: :|||:||| | ||| -AGGGGUGGGCCUUCCCCCUUGGCCC Hgs; Hrs mmu-miR-324-5p 274 302 GUGGU-------UACGGGAUCCCCUACGC :||| ||||: | |||||||| UGCCACAGGUGAAUGCUGU-GGGGAUGCU Hgs; Hrs mmu-miR-326 287 318 -UGAC-CUCCUUC--------CCGGGUCUCC :||| |:||| |||||:||| UGCUGUGGGGAUGCUUAGCCUGGCCCGGAGU Hgs; Hrs mmu-miR-330 245 278 -AGAGACGUC---CGGG---ACACGAA--ACG- |||||| || |||| ||||:| ||| UUCUCUGGAGAGUGCCCGGCUGUGUUGGGUGCC Hgs; Hrs mmu-miR-339 203 225 -ACUCGAGGACCUCCUGUCCCU- ||| |||| :|||| |||: CUGACCUCCCC-GGGACUGGGGC Hgs; Hrs mmu-miR-342 269 299 CUGCCCACG----CUAAA---GACACACUCU- :|||||| |:| ||||| |:|| -UUGGGUGCCACAGGUGAAUGCUGUG-GGGAU Hgs; Hrs mmu-miR-345 214 232 CGUGACCUGAUCCCCAGUCGU- |||||:||| || ||| ----GGGACUGGGGCUCUGCAG Hgs; Hrs mmu-miR-346 4 29 UCUCCGUCCGUGAGCC---CGUCUGU ||| | |||:||| ||||| UGAGUCUGGCGCUCACCAUGCAGAG- Hgs; Hrs mmu-miR-34a 204 231 -UUGUU--GGUC--GAUUCUGUGACGGU :|| ||:| ||::|:| |||| UGACCUCCCCGGGACUGGGGCUCUGCA- Hgs; Hrs mmu-miR-351 212 235 -GUCC-GAGUUUCCCGAGGAGUCCCU |:|| || :||||||: ||||| CCGGGACU---GGGGCUCUGCAGGGC Hgs; Hrs mmu-miR-361 297 325 CAUGG---GGACC---UCUAAGACUAUU |:|: ||||| :|| ||||||: AUGCUUAGCCUGGCCCGGAGUCUGAUGU Hgs; Hrs mmu-miR-370 368 398 -UUGGU---CCAAGGUGGGGUCGU--CCG- ||||| || ||| | ||||| ||: GAACCAUGUGGCUCCUGCACAGCAAGGGUA Hgs; Hrs mmu-miR-383 183 211 UCGGUGUCAG-----UGGAAGACUAGA- ||: ||||| :|| ||||| || UGCUUCAGUCCUGAUGCCGUCUGACCUC Hgs; Hrs mmu-miR-411 262 295 -UGACU---CCCAA-----UCACC--UGGCACAA :||| |||| :||| :|:||| GGCUGUGUUGGGUGCCACAGGUGAAUGCUGUGG- Hgs; Hrs mmu-miR-412 260 288 UGCCGAU-C-ACCUG----GUCCACUUCA |||||: | |||: |||||||| CCGGCUGUGUUGGGUGCCACAGGUGAAU- Hgs; Hrs mmu-miR-431 206 237 -GGAC--GUACUG---CCG-GACGUUCUGU- ||| | ||| ||| |||||:|:|| ACCUCCCCGGGACUGGGGCUCUGCAGGGCAA Hgs; Hrs mmu-miR-465-3p 297 317 AGAUGAAUCUUUCCGGGACUAG |:||||| ||||| || -AUGCUUAGCCUGGCCCGGAG- Hgs; Hrs mmu-miR-484 280 311 UAGCC-CU-------CCCCUGAC--UCGGACU- || || |||||: ||||||: --AGGUGAAUGCUGUGGGGAUGCUUAGCCUGGC Hgs; Hrs mmu-miR-485-5p 168 190 CUUAAGUAGUG-CC---GGUCGGAGA :||||| || || ||:|| ----CUAUCACUGGUUCCCUGCUUCA Hgs; Hrs mmu-miR-486 212 235 GAGCCC---CGUCGAGUCAUGUCCU- |||| | :|||| |:||||: -CCGGGACUGGGGCUC--UGCAGGGC Hgs; Hrs mmu-miR-489 327 345 CGACGGUAUAUACACCACAGUAA |:| |:||||||||| ---ACUAACUGUGUGGUGUCC-- Hgs; Hrs mmu-miR-490 333 354 GUCGUACCUCAGGA--GGUCCAAC |::||| |||| || || -UGUGUGGUGUCCAGGCCUGGC-- Hgs; Hrs mmu-miR-491 150 188 -GGAG-UACCU--UC-----------CCAAGGGGUGA- |||| :||| :| |||||||::|| UCCUCGGUGGUCUGGCUCCUAUCACUGGUUCCCUGCUU Hgs; Hrs mmu-miR-497 274 293 AUGUUUGGUGUCACACG-ACGAC- :|||||| ||| ||||| ----UGCCACAG-GUGAAUGCUGU Hgs; Hrs mmu-miR-500 239 278 GACUUGGGA----------ACGGG---------UCCACGUA |||||:| ||||| :||||| -AGAACCUUCUCUGGAGAGUGCCCGGCUGUGUUGGGUGCC- Hgs; Hrs mmu-miR-503 155 188 -CGUCA------------UGACAAGGGCGACGAU |::|| |||| |:|| ||||| GGUGGUCUGGCUCCUAUCACUGGUUCC-CUGCUU Hgs; Hrs mmu-miR-546 4 24 -CUGAGGCA-CG-GUGGUA- || ||:| || |||||| UGAGUCUGGCGCUCACCAUG Hgs; Hrs mmu-miR-551b 317 345 GUGACU----UUGGUU--CAUACC-CAGC |||| |||:|| ||:||| ||| -UCUGAUGUGAACUAACUGUGUGGUGUCC Hgs; Hrs mmu-miR-652 256 280 -ACGUGUUGGGAUCA-CCGCGGUAA ||| |::|: |: ||:|||| GUGCCCGGCUGUGUUGGGUGCCAC- Hgs; Hrs mmu-miR-665 292 316 AUUCCCUG-GAGUCGGA--GGACCA :||||: ||:||||| || || -UGGGGAUGCUUAGCCUGGCCCGGA Hgs; Hrs mmu-miR-666 221 267 -CCGAGA-GUGUCG---------------A-----CACGGG CGA |||||| || :|| | |||||| ||| GGGCUCUGCAGGGCAAGUAGAACCUUCUCUGGAGAGUGCCCGGCUG Hgs; Hrs mmu-miR-668 250 280 -CCA-UCAC---CCGGCUCGGCUCACUGU- || |||| |||:| | |:||| || UGGAGAGUGCCCGGCUGUGUUGGGUGCCAC Hgs; Hrs mmu-miR-673 207 233 -GAGGU-UCCUGGUCUCGACAC-UC- |||| :||||::|:||| || || CCUCCCCGGGACUGGGGCUCUGCAGG Hgs; Hrs mmu-miR-674 421 452 AUGUGGU-GAGGGU----------AGAGUCACG- || ||||: ||||||||| ---CCCUUCUCCUUGGAUGUCAUCUCUCAGUGCA Hgs; Hrs mmu-miR-674* 255 295 AACAA-----GACUCUACCCU-------------CGACAC || ||| | |||| |||||| -AGUGCCCGGCUGUGUUGGGUGCCACAGGUGAAUGCUGUGG Hgs; Hrs mmu-miR-676 197 223 UCGAGUUG-UUGGAG---UCCUG-CC- || |: :||||| :|||| || UGC-CGUCUGACCUCCCCGGGACUGGG Hgs; Hrs mmu-miR-677 152 179 -AGUCU-----UCGAUUAGUAGUGACUU ||:| :||| :|||||||: CUCGGUGGUCUGGCUCC-UAUCACUGGU Hgs; Hrs mmu-miR-678 184 220 GGAGGUCAGGA--ACGU-----------GGCUCUG- ||:||||||| ||| |||:||| GCUUCAGUCCUGAUGCCGUCUGACCUCCCCGGGACU Hgs; Hrs mmu-miR-679 427 452 UGGU-UCU-CAGUGGAGUGUCAGG- || :|| ||||:||| |||| | UCCUUGGAUGUCAUCUCUCAGUGCA Hgs; Hrs mmu-miR-680 178 202 -GGGGGUACAGUCGU--CUACGGG :|||:: ||||: |||||| UUCCCUGCUUCAGUCCUGAUGCCG Hgs; Hrs mmu-miR-681 376 398 -UCGACGGACG-GUCGCUCCGAC :||| ||||| |||| ||| | UGGCU-CCUGCACAGCAAGGGUA Hgs; Hrs mmu-miR-685 182 208 CACGGAGU--GGAGU-CGGUA-ACU- |||:||| ||| | |||:| ||| CUGCUUCAGUCCUGAUGCCGUCUGAC Hgs; Hrs mmu-miR-689 204 226 CCUGGGGCGGCUC-GCCCCUGC ||||:| |||:| | |||:| UGACCUCCCCGGGACUGGGGCU Hgs; Hrs mmu-miR-690 336 356 AAACCAACAC-UCGGAUCGGAAA |||| :||||:||| -GUGGUGUCCAGGCCUGGCCC-- Hgs; Hrs mmu-miR-693-3p 271 294 AAUGUCGGUGUAGACUUUCGACG- : |||||| |||| ||||: -GGGUGCCACAGGUGAAUGCUGUG Hgs; Hrs mmu-miR-702 110 127 -CUCGCCCCAUUUCCCACCCGU |||| ||:|||||||| UGAGC-----AAGGGGUGGGCC Hgs; Hrs mmu-miR-705 123 152 ACGGGUGGGG----UGG----AGGGUGG- |||: |||| :|| |||| : GGCCUUCCCCCUUGGCCCUCUUCCCUGUC Hgs; Hrs mmu-miR-709 190 213 -AGGAGGACGG-AGAC-GGAGG- |||| |||| |||| ||||| GUCCUGAUGCCGUCUGACCUCCC Hgs; Hrs mmu-miR-710 201 224 GAG-UUGAGAGGGGUUCUGAACC- || :|| ||||||::|||| || GUCUGAC-CUCCCCGGGACUGGGG Hgs; Hrs mmu-miR-711 199 221 GAAUGUAGA---GAGGGGCCCAGGG |:||| ||||||||| |: ---CCGUCUGACCUCCCCGGGACUG Hgs; Hrs mmu-miR-712* 204 232 GUUGU--GGGCCC---CCACUGAG-CGU- :|| |||||| || |:||| ||| UGACCUCCCCGGGACUGG-GGCUCUGCAG Hgs; Hrs mmu-miR-714 338 361 -CGCUGG-CUGG-CCGGGAGCAGC |:| || |:|| |||||| || GGUGUCCAGGCCUGGCCCUGGUA- Hgs; Hrs mmu-miR-715 289 318 GUGCGCCCCCACA--------CGUGCCUC- :|:|||| || || ||||| -CUGUGGGGAUGCUUAGCCUGGCCCGGAGU Hgs; Hrs mmu-miR-717 391 421 -UCUCU---------UCCAUAGAGACAGACUC ||:| |||||||||||||| AAGGGUAGAAGCUUUAGGUAUCUCUGUCUC-- Hgs; Hrs mmu-miR-741 381 417 -GAUGU---------AUCUUA-----CCGUAGAGAGU ||:|| ||||| ||:|||||| CCUGCACAGCAAGGGUAGAAGCUUUAGGUAUCUCUG- Hgs; Hrs mmu-miR-742 358 382 AAAUGGGUC------GUACCACCGAAAG ||||||| ||| |||||| -GUACCCAGAAGAACCAU-GUGGCUC-- Hgs; Hrs mmu-miR-744 287 316 -CGACA---------AUCGGGAUCGGGGCGU ||||| ||| |||:|||| | UGCUGUGGGGAUGCUUAG-CCUGGCCCGGA- Hgs; Hrs mmu-miR-762 331 365 CGAGACA------------GGGCCGGGGUCG-GGG- |||| ||:|||||::|: ||| --ACUGUGUGGUGUCCAGGCCUGGCCCUGGUACCCA Hgs; Hrs mmu-miR-763 170 188 CGGUGACCAAGAAGGGUCGACC :||||||| |||| ||| AUCACUGGU---UCCCUGCUU- Hgs; Hrs mmu-miR-764-3p 187 213 UGUCA-----ACGGU-GAUACCGGAGGA |||| ||||: ||: ||||| UCAGUCCUGAUGCCGUCUGA--CCUCCC Hgs; Hrs mmu-miR-770-3p 337 360 GGUCG-AGGUGCAGUCCGGGUGC- :|: |||| | | ||||| | -UGGUGUCCAGGCCUGGCCCUGGU Hgs; Hrs mmu-miR-801 375 394 CAGCUAAGGCGUGCGUGUCGUUAG :|: ||| :||||||||| -GUGGCUCC---UGCACAGCAAG- Hgs; Hrs mmu-miR-96 261 280 -UCGUUUUUACACGAU-CACGGUUU :|| ||||:|: |||||| CGGC-----UGUGUUGGGUGCCAC- Hgs; Hrs mmu-miR-99a 212 235 UGUUCUAGCCU--AGAUG-CCCA |::|| :||: |||:| ||| CCGGGACUGGGGCUCUGCAGGGC Hgs; Hrs mmu-miR-324-5p 294 301 G---------------UGGU-------UACGGGAUCCCCUACGC :||| ||||: | |||||||| CCCGGCUGUGUUGGGUGCCACAGGUGAAUGCUGU-GGGGAUGCU Hgs; Hrs mmu-miR-540 202 209 -------------------------GGUCCUAGCUGG-AGACUGGA || ||| :|| |||||||| CCUAUCACUGGUUCCCUGCUUCAGUCCU-GAU--GCCGUCUGACCUC Hgs; Hrs mmu-miR-674 443 450 AUGU----------GGU-GAGGGU----------AGAGUCACG || ||||: ||||||||| GUAUCUCUGUCUCCCCUUCUCCUUGGAUGUCAUCUCUCAGUGCA Hgs; Hrs mmu-miR-702 119 126 ---------------------------CUCGCCCCAUUUCCCACCCGU |||| ||:|||||||| AUUACUGCCCUGUAGUGUCCCUUCUGUGAGC-----AAGGGGUGGGCC Hgs; Hrs mmu-miR-713 444 451 C--------------------GACACACGGA----AGUCACGU :|| ||:| |||||||| UAUCUCUGUCUCCCCUUCUCCUUGGAUGUCAUCUCUCAGUGCAG Hgs; Hrs mmu-miR-741 439 446 ----------------------GAUGUAUCUUACCGUAGAGAGU || | |:||| ||||||||| UUAGGUAUCUCUGUCUCCCCUUCUCCUU-GGAUGUCAUCUCUCAG Hgs; Hrs mmu-miR-103 270 293 aguauCGG-GACAUGUUACGACga ||| | | ||||||| tgggtGCCACAGGTGAATGCTGtg Hgs; Hrs mmu-miR-107 270 293 ACUAUCGG-GACAUGUUACGACga ||: ||| | | ||||||| TGGGTGCCACAGGTGAATGCTGtg Hgs; Hrs mmu-miR-10a 213 235 GUGUUUAAGCCUAGAUGUCCCau |: :| | || |||:||||| CGGGACTGGGGCTCTGCAGGGca Hgs; Hrs mmu-miR-122a 12 38 uguuuGUGGUA----ACAGUGUGAGGU |||||| || ||||| || gcgctCACCATGCAGAGTAACACTACA Hgs; Hrs mmu-miR-124a 262 280 CCGUAAGUGGCGCACGGaau ||| | ::::| ||||| GGC-TGTGTTGGGTGCCaca Hgs; Hrs mmu-miR-125a 211 234 GUGUCCAAUUUCCCAGA-GUCCCu | |:|| ::|| ||| ||||| CCCGGGACTGGGGCTCTGCAGGGc Hgs; Hrs mmu-miR-125b 262 284 aguguuCAAUCC-CAGAGUCCcu |||:|| | | |||| ggctgtGTTGGGTGCCACAGGtg Hgs; Hrs mmu-miR-134 165 195 GGGGA----GACCA---GUUG--GUCAGugu |:||| ||||| | :| ||||| CTCCTATCACTGGTTCCCTGCTTCAGTCctg Hgs; Hrs mmu-miR-139 276 295 ucUGUGCAC--GUGACAUCu ||| ||| ::||||:| ccACAGGTGAATGCTGTGGg Hgs; Hrs mmu-miR-140* 144 161 AGGCACCAAGAUGGGACACCAu ||| || || |:| ||||| TCCCTG--TC--CTCGGTGGTc Hgs; Hrs mmu-miR-141 243 271 GGUAGA-A------AUGGUCUGUCACAAu || ||| | |:|| |:| ||||| CCTTCTCTGGAGAGTGCCCGGCTGTGTTg Hgs; Hrs mmu-miR-142-3p 19 38 GGUAUUUCAUCCUUUGUGAUGU ||||: || | | ||||||||| CCATGCAG-A-GTAACACTACA Hgs; Hrs mmu-miR-149 300 321 ccucacuuCUGUGCCUCGGUCU |:| |||||:| || cttagcctGGCCCGGAGTCTGA Hgs; Hrs mmu-miR-181c 271 290 ugaguGGCUGUCCAACUUACaa || ||||| |||||| gggtgCC-ACAGG-TGAATGct Hgs; Hrs mmu-miR-184 164 194 uGGGAAUAGU---CAAG------AGGCAGGu |:| ||||| |||| || |||| gCTCCTATCACTGGTTCCCTGCTTCAGTCCt Hgs; Hrs mmu-miR-193 218 239 GACCCUGAAACAU-CCGGUCAa |||||:|| || | ||| ||| CTGGGGCTCTGCAGGGCAAGTa Hgs; Hrs mmu-miR-199a 150 178 cuuguCCAUCAGAC------UUGUGACCc |||:||||| | |||||| tcctcGGTGGTCTGGCTCCTATCACTGGt Hgs; Hrs mmu-miR-199a* 316 336 uuGGUUACACGUCUGA-UGACAu |::||||| | ||| ||||| gtCTGATGTG-A-ACTAACTGTg Hgs; Hrs mmu-miR-199b 150 178 cuuguCCAUCAGAU------UUGUGACCc |||:||||: | |||||| tcctcGGTGGTCTGGCTCCTATCACTGGt Hgs; Hrs mmu-miR-200a 250 271 uguagcaAUGGUCUGUCACAAu |:|| |:| ||||| tggagagTGCCCGGCTGTGTTg Hgs; Hrs mmu-miR-207 229 258 cUCCC--UCCUCUCG-----GUCCUCUucg |||| || ||| | | ||||| cAGGGCAAGTAGAACCTTCTCTGGAGAgtg Hgs; Hrs mmu-miR-214 241 267 gacGGACAGA-----CAC-GGACGACA |:| ||| ||| || ||||| aacCTTCTCTGGAGAGTGCCCGGCTGT Hgs; Hrs mmu-miR-217 179 203 uaGGUC--AGUCAAGGACUACGUCAu || | |||| ||||||||| || tcCCTGCTTCAG-TCCTGATGCCGTc Hgs; Hrs mmu-miR-221 358 380 uuUGGGUCGUC-UGUUACAUCGA |||||| || || ||||:||| gtACCCAGAAGAACCATGTGGCT Hgs; Hrs mmu-miR-222 357 380 CUCUGGGUCAUC--GGUCUACAUCGA |: |||||| || || ||||:||| GGTACCCAGAAGAACC--ATGTGGCT Hgs; Hrs mmu-miR-23a 293 327 CCUUUA-G----GGACCG---------UUACACUa ||::|| | |||||| :|||||| GGGGATGCTTAGCCTGGCCCGGAGTCTGATGTGAa Hgs; Hrs mmu-miR-24 174 201 GA-CAA-GGACGA---CUUGACU-CGGu || ||| |||||| | |||| ||| CTGGTTCCCTGCTTCAGTCCTGATGCCg Hgs; Hrs mmu-miR-293 215 237 ugUGAUGUUUGAGACG--CCGUga |||: :::|||||| |||| ggACTG-GGGCTCTGCAGGGCAag Hgs; Hrs mmu-miR-296 106 128 uGUC-CUAACUCCCC-CCCGGGA | | || ||||| |||||:| tCTGTGAGCAAGGGGTGGGCCTT Hgs; Hrs mmu-miR-297 20 39 GUACGUGUACGUGUGU-AUGUa |||||| | |:| ||| |||| CATGCAGA-GTA-ACACTACAg Hgs; Hrs mmu-miR-298 118 146 CCUUCUUG---UCGGGA----GGAGACGG ||: |::| |||| ||||| || GGGTGGGCCTTCCCCCTTGGCCCTCTTCC Hgs; Hrs mmu-miR-324-5p 281 301 guggUUACGGGAUCCCCUACGc |||||: | |||||||| ggtgAATGCTGT-GGGGATGCt Hgs; Hrs mmu-miR-326 288 317 uGAC-CUCCU-----UC---CCGGGUCUCc ||| |:||| || |||||:||| gCTGTGGGGATGCTTAGCCTGGCCCGGAGt Hgs; Hrs mmu-miR-328 212 237 uGCCUU---CCCGUCUC-UCCCGGUC |||:| |||| | ||||| || cCGGGACTGGGGCTCTGCAGGGCAAG Hgs; Hrs mmu-miR-330 246 272 AGAGACGUC---CGGGAC-ACGAAACg |||||| || |||| | ||: ||| TCTCTGGAGAGTGCCCGGCTGTGTTGg Hgs; Hrs mmu-miR-339 204 223 ACUCGAGGACCUCCUGUCCCu ||| |||| | |||| ||| TGACCTCCCCG-GGACTGGGg Hgs; Hrs mmu-miR-342 268 296 CUGCCCACG----CUAAAGAC-ACACUCu | :|||||| |:| || ||||:| GTTGGGTGCCACAGGTGAATGCTGTGGGg Hgs; Hrs mmu-miR-345 210 230 cGUGACCUGAUCCCCAGUCGU | | |||||:||| || ||| cCCCGGGACTGGGGCTCTGCA Hgs; Hrs mmu-miR-346 4 29 uCUCCGUCCGUGA---GCCCGUCUgu ||| | |||:|| | ||||| tGAGTCTGGCGCTCACCATGCAGAgt Hgs; Hrs mmu-miR-34a 207 231 uuguuGGUC--GAUUCUGUGACGgu ||:| ||::|:| |||| cctccCCGGGACTGGGGCTCTGCag Hgs; Hrs mmu-miR-351 213 234 GUCC-GAGUUUCCCGAGGA-GUCCCu |:|| || :||||| || ||||| CGGGACT---GGGGCT-CTGCAGGGc Hgs; Hrs mmu-miR-361 300 324 cauggGGACC---UCUAAGACUAuu ||||| :|| |||||| cttagCCTGGCCCGGAGTCTGATgt Hgs; Hrs mmu-miR-370 369 395 UUGGU---CCAAGGUGGGGUCG-UCCg ||||| || ||| | |||| ||| AACCATGTGGCTCCTGCACAGCAAGGg Hgs; Hrs mmu-miR-411 248 270 uGACUCCCAAUCAC---CUGGCACAA ||| | | |||| |:|:||||| tCTG-GAG--AGTGCCCGGCTGTGTT Hgs; Hrs mmu-miR-412 260 288 uGCCGAU-C-ACCU---G-GUCCACUUca |||||: | |||: | |||||||| cCGGCTGTGTTGGGTGCCACAGGTGAAtg Hgs; Hrs mmu-miR-431 207 235 GGA--CGUACUG---CCG-GACGUUCUGU ||| |: ||| ||| |||||:|:|| CCTCCCCGGGACTGGGGCTCTGCAGGGCA Hgs; Hrs mmu-miR-465-3p 296 317 agAUGAAUCUUUCCGGGACUag |:||||| ||||| || gaTGCTTAGCCTGGCCCGGAgt Hgs; Hrs mmu-miR-484 286 309 uagccCUCCCCU--GACUCGGACu | ||||| || |||||| atgctGTGGGGATGCTTAGCCTGg Hgs; Hrs mmu-miR-485-5p 163 189 CUUAAG-UAGUG-CC---GGUCGGAGa |: | | ||||| || || ||:|| GGCTCCTATCACTGGTTCCCTGCTTCa Hgs; Hrs mmu-miR-486 211 233 GAGCCC---CGUCGAGUCAUGUCCu | |||| | :|||| |:|||| CCCGGGACTGGGGCTC--TGCAGGg Hgs; Hrs mmu-miR-489 324 346 cgacGGUAUAUACACCACAGuaa |:| |:||||||||| tgaaCTAACTGTGTGGTGTCcag Hgs; Hrs mmu-miR-490 332 350 GUCGUACCUCAGGAGGUCCaac | |::||| | |||||| CTGTGTGGTG---TCCAGGcct Hgs; Hrs mmu-miR-491 167 186 GGAGUACCUUCCCAAGGGGUGA ||| || | |||||||::|| CCT-AT-CACTGGTTCCCTGCT Hgs; Hrs mmu-miR-497 270 294 auguuuGGUGU-CAC--ACGACgac ||||| ||| ||||| tgggtgCCACAGGTGAATGCTGtgg Hgs; Hrs mmu-miR-500 265 287 gacuugggaACGG-GUCCACGUA |||| |||||| || tgtgttgggTGCCACAGGTGAAT Hgs; Hrs mmu-miR-503 168 187 cgucaUGACAAGGGCGACGAu |||| | :| ||||| ctatcACTGGT-TCCCTGCTt Hgs; Hrs mmu-miR-540 187 209 gGUC----CUAGCUGGAGACUGGA ||| ||| | | |||||||| tCAGTCCTGAT-GCCGTCTGACCT Hgs; Hrs mmu-miR-542-5p 108 135 gCACU-GU--ACUACU----AGGGGcuc |||| || |:||: ||||| tGTGAGCAAGGGGTGGGCCTTCCCCctt Hgs; Hrs mmu-miR-546 5 22 CUGAGG-CACG-GUGGUA || ||: | || |||||| GAGTCTGGCGCTCACCAT Hgs; Hrs mmu-miR-551b 316 344 guGACU----UUGGUU--CAUACC-CAGc |||| |||:|| ||:||| ||| gtCTGATGTGAACTAACTGTGTGGTGTCc Hgs; Hrs mmu-miR-652 257 280 ACGUGUUGGGAUCA-CCGCGGUaa ||| |::|: |: | ||:|||| TGCCCGGCTGTGTTGGGTGCCAca Hgs; Hrs mmu-miR-665 291 315 auuCCCUG-GAGUCGGA--GGACCa ||||: ||:||||| || || gtgGGGATGCTTAGCCTGGCCCGGa Hgs; Hrs mmu-miR-666 243 264 ccgAGAG-UGUCGACACGGGCga |||| : || ||||||| cctTCTCTGGAG-AGTGCCCGgc Hgs; Hrs mmu-miR-668 251 278 CC-AUCAC---CCGGCUCGGCUCACUGU || |||| |||:| |::|:||| || GGAGAGTGCCCGGCTGTGTTGGGTGCCA Hgs; Hrs mmu-miR-673 208 230 GA-GGUUCCUGGUCUCGACACuc || || :||||::|:||| || CTCCCCGGGACTGGGGCTCTGca Hgs; Hrs mmu-miR-674 419 450 AUGUGGUGAGG--------GU--AGAGUCACG | | |: |||| || ||||||||| TCCCCTTCTCCTTGGATGTCATCTCTCAGTGC Hgs; Hrs mmu-miR-674* 264 293 aACAAGACUC------UACCCU--CGACAC ||| :||:| | | || |||||| cTGTGTTGGGTGCCACAGGTGAATGCTGTG Hgs; Hrs mmu-miR-677 153 178 AGUCUUC-GAUU-AG--UAGUGACuu ||:| :| ||:: || ||||||| TCGGTGGTCTGGCTCCTATCACTGgt Hgs; Hrs mmu-miR-678 199 218 GGAGGUCAGGAACGUGGCUCUG || :| | ||| | |||:||| CCGTCTGACCT--CCCCGGGAC Hgs; Hrs mmu-miR-679 428 450 uGGUUCU-CAGUGGAGUGUCAgg |: :|| ||||:||| |||| cCTTGGATGTCATCTCTCAGTgc Hgs; Hrs mmu-miR-680 179 201 gGGGGUACAGUC--GUCUACGGg |||:: |||| | |||||| tCCCTGCTTCAGTCCTGATGCCg Hgs; Hrs mmu-miR-681 377 397 uCGACGGACG-GUCGCUCCGAc ||| ||||| |||| ||| | gGCT-CCTGCACAGCAAGGGTa Hgs; Hrs mmu-miR-690 331 357 aaAC-CAACAC----UCGGAUCGGAAa || || ||| :||||:||| | acTGTGTGGTGTCCAGGCCTGGCCCTg Hgs; Hrs mmu-miR-693-3p 270 292 aauguCGGUGUAGACUUUCGACg |||||| |||| |||| tgggtGCCACAGGTGAATGCTGt Hgs; Hrs mmu-miR-702 106 126 cucgcCCCAUUUCCCACCCGu | | ||:|||||||| tctgtGAGCAAGGGGTGGGCc Hgs; Hrs mmu-miR-705 148 172 ACGGGUG-----GGGUGGAGGGUGG ||:|| | :|:: ||||:|:| TGTCCTCGGTGGTCTGGCTCCTATC Hgs; Hrs mmu-miR-709 191 211 AGGAGGACGG-AGAC-GGAGG |||| |||| |||| ||||| TCCTGATGCCGTCTGACCTCC Hgs; Hrs mmu-miR-711 196 220 gaauGUAGA---GAGGGGCCCAGgg |:||| ||||||||| | atgcCGTCTGACCTCCCCGGGACtg Hgs; Hrs mmu-miR-712* 205 230 gUUGUGGGCCCC---CACUGAG-CGU | | ||| ||| | |:||| ||| gACCTCCCCGGGACTGGGGCTCTGCA Hgs; Hrs mmu-miR-713 433 451 CGACACACGGAAGUCACGU | ||| |: |||||||| GATGTCATCTCTCAGTGCA Hgs; Hrs mmu-miR-714 339 361 CGCUGG-CUGG-CCGGGAGCAgc |:| || |:|| |||||| || GTGTCCAGGCCTGGCCCTGGTac Hgs; Hrs mmu-miR-715 288 316 gugCGCCCCCAC-------A-CGUGCCUC |:|||| || | || ||||| gctGTGGGGATGCTTAGCCTGGCCCGGAG Hgs; Hrs mmu-miR-717 401 422 ucucuUCCAUAGAGACAGAcuc |||||||||||||| gctttAGGTATCTCTGTCTccc Hgs; Hrs mmu-miR-741 426 446 GAUGUAUCUUACCGUAGAGAGU || | | |:||| ||||||||| CT-CCTTGGATGTCATCTCTCA Hgs; Hrs mmu-miR-741 391 417 gauguAUCUU----A-CCGUAGAGAgu ||||| | ||:|||||| aagggTAGAAGCTTTAGGTATCTCTgt Hgs; Hrs mmu-miR-742 357 383 aaAUGGGUC------GUACCACCGAaag ||||||| ||| |||||| ggTACCCAGAAGAACCAT-GTGGCTcct Hgs; Hrs mmu-miR-744 296 316 CGAC-AAUCGGGAUCGGGGCgu | || |||| |||:|||| | GATGCTTAG-CCTGGCCCGGag Hgs; Hrs mmu-miR-762 336 356 cgagACAGGGCCGGGGUCGGGg ||||| || ||::|||| gtggTGTCCAGG-CCTGGCCCt Hgs; Hrs mmu-miR-763 170 188 cgGUGACCAAGAAGGGUCGAcc |||||| ||||| ||| atCACTGG---TTCCCTGCTtc Hgs; Hrs mmu-miR-764-3p 192 212 uGUCAACGGUGAUACCGGAGGa | | ||||: | || ||||| cCTGATGCCG-TCTGACCTCCc Hgs; Hrs mmu-miR-801 369 394 caGCUAAGGCGUG--CGUGUCGUUag | || : || | ||||||||| aaCCATGTGGCTCCTGCACAGCAAgg Hgs; Hrs mmu-miR-96 257 280 uCGUUUUUACACGA-UCACGGUuu || :: ||||:| :|||||| tGCCCGGCTGTGTTGGGTGCCAca

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Hgs RAID00048834 mmu-miR-874-3p miRNA MIMAT0004853 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00087015 mmu-miR-7075-5p miRNA MIMAT0028056 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00136385 mmu-miR-3090-5p miRNA MIMAT0014901 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00200962 mmu-miR-3095-3p miRNA MIMAT0014912 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00385364 mmu-miR-873a-5p miRNA MIMAT0004936 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00445621 mmu-miR-140-5p miRNA MIMAT0000151 Hgs mRNA 15239 CLIP-seq//Prediction 0.6308 Hgs RAID00453869 mmu-miR-183-5p miRNA MIMAT0000212 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00731809 mmu-miR-324-5p miRNA MIMAT0000555 Hgs mRNA 15239 CLIP-seq//Prediction 0.6308 Hgs RAID00743359 mmu-miR-7072-5p miRNA MIMAT0028050 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00760461 mmu-miR-7676-5p miRNA MIMAT0029860 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID00769416 mmu-miR-125b-5p miRNA MIMAT0000136 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID01672961 mmu-miR-19a-3p miRNA MIMAT0000651 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID01909040 mmu-miR-3109-3p miRNA MIMAT0014950 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID01982119 mmu-miR-3154 miRNA MIMAT0035714 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02191236 mmu-miR-142a-3p miRNA MIMAT0000155 Hgs mRNA 15239 CLIP-seq//Prediction 0.6478 Hgs RAID02229395 mmu-miR-7030-5p miRNA MIMAT0027964 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02285380 mmu-miR-140-3p miRNA MIMAT0000152 Hgs mRNA 15239 CLIP-seq 0.5483 Hgs RAID02402022 mmu-miR-6913-5p miRNA MIMAT0027726 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02545683 mmu-miR-7076-5p miRNA MIMAT0028058 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02553143 mmu-miR-203-3p miRNA MIMAT0000236 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02638274 mmu-miR-3473d miRNA MIMAT0020632 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02806713 mmu-miR-6929-5p miRNA MIMAT0027758 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID02924150 mmu-miR-7094-3p miRNA MIMAT0028095 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03096251 mmu-miR-590-3p miRNA MIMAT0004896 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03216069 mmu-miR-448-3p miRNA MIMAT0001533 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03247533 mmu-miR-876-3p miRNA MIMAT0004855 Hgs mRNA 15239 CLIP-seq//Prediction 0.6308 Hgs RAID03257171 mmu-miR-125a-5p miRNA MIMAT0000135 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03370234 mmu-miR-8100 miRNA MIMAT0031403 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03548544 mmu-miR-674-5p miRNA MIMAT0003740 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03673092 mmu-miR-185-5p miRNA MIMAT0000214 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03687832 mmu-miR-1947-3p miRNA MIMAT0017343 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03772573 mmu-miR-882 miRNA MIMAT0004847 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03828677 mmu-miR-143-3p miRNA MIMAT0000247 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03877160 mmu-miR-19b-3p miRNA MIMAT0000513 Hgs mRNA 15239 Prediction 0.1828 Hgs RAID03977835 mmu-miR-6912-5p miRNA MIMAT0027724 Hgs mRNA 15239 Prediction 0.1828